Downloadable Data in HOMD
1.HOMD FTP Site
2.Download 16S rRNA Gene Sequences
3.Data for Analyzing NGS 16S rRNA Reads
4.Download Genomic Sequences and Dynamic Annotations  (Archive)
5.Phylogeny
TypeFormats
Phylogenetic tree based on
HOMD 16S rRNA Reference Sequences
Phylogenetic Tree SVG Format
Newick Tree Format
Phylogenetic Tree PDF Format
RefSeq Newick Table
Phylogenetic tree based on
all 16S rDNA sequences in genomes
Phylogenetic Tree SVG Format
Newick Tree Format
Phylogenetic Tree PDF Format
16s Newick Table
PhyloPhlan tree based on core proteins Phylogenetic Tree SVG Format
Newick Tree Format
Phylogenetic Tree PDF Format
Proteins Newick Table
6.Batch Taxonomic Data Download:
 
TypeFormats
Taxon Table Tab Delimited Text
(View in browser)
Tab Delimited Text
(Save to file)
MS Excel Format
(Save to file)
Taxonomic Hierarchy Tab Delimited Text
(View in browser)
Tab Delimited Text
Save to file)
MS Excel Format
(Save to file)
Taxonomic Level Tab Delimited Text
(View in browser)
Tab Delimited Text
(Save to file)
MS Excel Format
(Save to file)
7.Batch Genomic Meta Informaton Download:
 
TypeFormats
Sequence Meta Information Tab Delimited Text
(View in browser)
Tab Delimited Text
(Save to file)
MS Excel Format
(Save to file)
8.HOMD Database Schema
9.HOMD Database Structures:
DatabaseTable Structure
HOMD_taxonomy Text SQL
HOMD_genomes Text SQL
static_genome Text SQL
annotated_genome Text SQL

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