Downloadable Data in HOMD
1.HOMD Data Folder by FTP by HTTP
2.HOMD 16S rRNA Gene Reference Sequences (HOMD RefSeq)
3.Data for Analyzing NGS 16S rRNA Reads
4.HOMD Genomic Sequences and Dynamic Annotations  
5.Phylogeny
TypeFormats
Phylogenetic tree of
HOMD 16S rRNA Reference Sequences
in SVG format in Newick format in PNG format
RefSeq Newick Table
Phylogenetic tree of
16S rRNA gene sequences in HOMD genomes
in SVG format in Newick format in PDF format
16s Newick Table
Core protein phylogenomic tree of HOMD genomes in SVG format in Newick format in PNG format
Proteins Newick Table
6.Batch Taxonomic Data Download:
 
TypeFormats
Taxon Table Tab Delimited Text
(View in browser)
Tab Delimited Text
(Save to file)
MS Excel Format
(Save to file)
Taxonomic Hierarchy Tab Delimited Text
(View in browser)
Tab Delimited Text
Save to file)
MS Excel Format
(Save to file)
Taxonomic Level Tab Delimited Text
(View in browser)
Tab Delimited Text
(Save to file)
MS Excel Format
(Save to file)
7.Batch Genomic Meta Informaton Download:
 
TypeFormats
Sequence Meta Information Tab Delimited Text
(View in browser)
Tab Delimited Text
(Save to file)
MS Excel Format
(Save to file)
8.HOMD Database Schema
9.HOMD Database Structures:
DatabaseTable Structure
HOMD_taxonomy Text SQL
HOMD_genomes Text SQL
static_genome Text SQL
annotated_genome Text SQL

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