Genome Explorer: Limosilactobacillus fermentum IFO 3956 (SEQF1533.1)
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PROKKA Annotation for SEQF1533.1
| Genome selected: Limosilactobacillus fermentum IFO 3956 | |||
| Contigs: | 1 | Bases: | 2098685 bps |
| CDS: | 2087 | rRNA: | 15 |
| tmRNA: | 1 | tRNA: | 58 |
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| # | Molecule | PID | Genome Viewer |
NA (Length)(Seq) |
AA (Length)(Seq) |
Range | Gene | Gene Product |
|---|---|---|---|---|---|---|---|---|
| 2001 | SEQF1533.1_AP008937.1 | SEQF1533.1_02103 | open | 405 [NA] | 134 [AA] | 2018424-2018828 | hypothetical protein | |
| 2002 | SEQF1533.1_AP008937.1 | SEQF1533.1_02104 | open | 357 [NA] | 118 [AA] | 2018833-2019189 | hypothetical protein | |
| 2003 | SEQF1533.1_AP008937.1 | SEQF1533.1_02105 | open | 648 [NA] | 215 [AA] | 2019191-2019838 | hypothetical protein | |
| 2004 | SEQF1533.1_AP008937.1 | SEQF1533.1_02106 | open | 474 [NA] | 157 [AA] | 2019967-2020440 | hypothetical protein | |
| 2005 | SEQF1533.1_AP008937.1 | SEQF1533.1_02107 | open | 837 [NA] | 278 [AA] | 2020986-2021822 | rhaS_2 | HTH-type transcriptional activator RhaS |
| 2006 | SEQF1533.1_AP008937.1 | SEQF1533.1_02108 | open | 609 [NA] | 202 [AA] | 2021869-2022477 | hypothetical protein | |
| 2007 | SEQF1533.1_AP008937.1 | SEQF1533.1_02109 | open | 2223 [NA] | 740 [AA] | 2022493-2024715 | agaA | Alpha-galactosidase AgaA |
| 2008 | SEQF1533.1_AP008937.1 | SEQF1533.1_02110 | open | 1188 [NA] | 395 [AA] | 2024980-2026167 | IS256 family transposase IS1310 | |
| 2009 | SEQF1533.1_AP008937.1 | SEQF1533.1_02111 | open | 975 [NA] | 324 [AA] | 2026178-2027152 | hypothetical protein | |
| 2010 | SEQF1533.1_AP008937.1 | SEQF1533.1_02112 | open | 1221 [NA] | 406 [AA] | 2027149-2028369 | IS256 family transposase ISCARN68 | |
| 2011 | SEQF1533.1_AP008937.1 | SEQF1533.1_02113 | open | 726 [NA] | 241 [AA] | 2028400-2029125 | IS256 family transposase ISPeth3 | |
| 2012 | SEQF1533.1_AP008937.1 | SEQF1533.1_02114 | open | 162 [NA] | 53 [AA] | 2029265-2029426 | hypothetical protein | |
| 2013 | SEQF1533.1_AP008937.1 | SEQF1533.1_02115 | open | 240 [NA] | 79 [AA] | 2029606-2029845 | hypothetical protein | |
| 2014 | SEQF1533.1_AP008937.1 | SEQF1533.1_02116 | open | 282 [NA] | 93 [AA] | 2029921-2030202 | hypothetical protein | |
| 2015 | SEQF1533.1_AP008937.1 | SEQF1533.1_02117 | open | 924 [NA] | 307 [AA] | 2030677-2031600 | IS30 family transposase IS1070 | |
| 2016 | SEQF1533.1_AP008937.1 | SEQF1533.1_02118 | open | 720 [NA] | 239 [AA] | 2031641-2032360 | ISL3 family transposase ISLjo2 | |
| 2017 | SEQF1533.1_AP008937.1 | SEQF1533.1_02119 | open | 474 [NA] | 157 [AA] | 2032496-2032969 | hypothetical protein | |
| 2018 | SEQF1533.1_AP008937.1 | SEQF1533.1_02120 | open | 864 [NA] | 287 [AA] | 2032969-2033832 | hypothetical protein | |
| 2019 | SEQF1533.1_AP008937.1 | SEQF1533.1_02121 | open | 387 [NA] | 128 [AA] | 2033925-2034311 | hypothetical protein | |
| 2020 | SEQF1533.1_AP008937.1 | SEQF1533.1_02122 | open | 1221 [NA] | 406 [AA] | 2034381-2035601 | IS256 family transposase ISCARN68 | |
| 2021 | SEQF1533.1_AP008937.1 | SEQF1533.1_02123 | open | 444 [NA] | 147 [AA] | 2036006-2036449 | bin3_2 | Putative transposon Tn552 DNA-invertase bin3 |
| 2022 | SEQF1533.1_AP008937.1 | SEQF1533.1_02124 | open | 672 [NA] | 223 [AA] | 2036778-2037449 | hrtA | Putative hemin import ATP-binding protein HrtA |
| 2023 | SEQF1533.1_AP008937.1 | SEQF1533.1_02125 | open | 1047 [NA] | 348 [AA] | 2037454-2038500 | hypothetical protein | |
| 2024 | SEQF1533.1_AP008937.1 | SEQF1533.1_02126 | open | 1188 [NA] | 395 [AA] | 2038615-2039802 | IS256 family transposase IS1310 | |
| 2025 | SEQF1533.1_AP008937.1 | SEQF1533.1_02127 | open | 450 [NA] | 149 [AA] | 2039906-2040355 | crtB | 15-cis-phytoene synthase |
| 2026 | SEQF1533.1_AP008937.1 | SEQF1533.1_02128 | open | 699 [NA] | 232 [AA] | 2040577-2041275 | hypothetical protein | |
| 2027 | SEQF1533.1_AP008937.1 | SEQF1533.1_02129 | open | 849 [NA] | 282 [AA] | 2041272-2042120 | IS3 family transposase ISSth1b | |
| 2028 | SEQF1533.1_AP008937.1 | SEQF1533.1_02130 | open | 291 [NA] | 96 [AA] | 2042013-2042303 | hypothetical protein | |
| 2029 | SEQF1533.1_AP008937.1 | SEQF1533.1_02131 | open | 363 [NA] | 120 [AA] | 2042490-2042852 | hypothetical protein | |
| 2030 | SEQF1533.1_AP008937.1 | SEQF1533.1_02132 | open | 597 [NA] | 198 [AA] | 2043131-2043727 | insK_9 | Putative transposase InsK for insertion sequence element IS150 |
| 2031 | SEQF1533.1_AP008937.1 | SEQF1533.1_02133 | open | 1002 [NA] | 333 [AA] | 2043875-2044876 | melR | HTH-type transcriptional repressor MelR |
| 2032 | SEQF1533.1_AP008937.1 | SEQF1533.1_02134 | open | 1455 [NA] | 484 [AA] | 2044904-2046358 | galT | Galactose-1-phosphate uridylyltransferase |
| 2033 | SEQF1533.1_AP008937.1 | SEQF1533.1_02135 | open | 1167 [NA] | 388 [AA] | 2046386-2047552 | galK_2 | Galactokinase |
| 2034 | SEQF1533.1_AP008937.1 | SEQF1533.1_02136 | open | 951 [NA] | 316 [AA] | 2047724-2048674 | hypothetical protein | |
| 2035 | SEQF1533.1_AP008937.1 | SEQF1533.1_02137 | open | 789 [NA] | 262 [AA] | 2048680-2049468 | hypothetical protein | |
| 2036 | SEQF1533.1_AP008937.1 | SEQF1533.1_02138 | open | 513 [NA] | 170 [AA] | 2049487-2049999 | hypothetical protein | |
| 2037 | SEQF1533.1_AP008937.1 | SEQF1533.1_02139 | open | 225 [NA] | 74 [AA] | 2050012-2050236 | hypothetical protein | |
| 2038 | SEQF1533.1_AP008937.1 | SEQF1533.1_02140 | open | 735 [NA] | 244 [AA] | 2050352-2051086 | artM_2 | Arginine transport ATP-binding protein ArtM |
| 2039 | SEQF1533.1_AP008937.1 | SEQF1533.1_02141 | open | 690 [NA] | 229 [AA] | 2051088-2051777 | tcyB_2 | L-cystine transport system permease protein TcyB |
| 2040 | SEQF1533.1_AP008937.1 | SEQF1533.1_02142 | open | 801 [NA] | 266 [AA] | 2051880-2052680 | putative amino-acid ABC transporter-binding protein | |
| 2041 | SEQF1533.1_AP008937.1 | SEQF1533.1_02143 | open | 327 [NA] | 108 [AA] | 2052819-2053145 | hypothetical protein | |
| 2042 | SEQF1533.1_AP008937.1 | SEQF1533.1_02144 | open | 939 [NA] | 312 [AA] | 2053247-2054185 | ghrB | Glyoxylatehydroxypyruvate reductase B |
| 2043 | SEQF1533.1_AP008937.1 | SEQF1533.1_02145 | open | 483 [NA] | 160 [AA] | 2054187-2054669 | greA_2 | Transcription elongation factor GreA |
| 2044 | SEQF1533.1_AP008937.1 | SEQF1533.1_02146 | open | 795 [NA] | 264 [AA] | 2054886-2055680 | hypothetical protein | |
| 2045 | SEQF1533.1_AP008937.1 | SEQF1533.1_02147 | open | 510 [NA] | 169 [AA] | 2055787-2056296 | ymdB | O-acetyl-ADP-ribose deacetylase |
| 2046 | SEQF1533.1_AP008937.1 | SEQF1533.1_02148 | open | 1905 [NA] | 634 [AA] | 2056305-2058209 | pepO | Neutral endopeptidase |
| 2047 | SEQF1533.1_AP008937.1 | SEQF1533.1_02149 | open | 1311 [NA] | 436 [AA] | 2058469-2059779 | pbuG | Guaninehypoxanthine permease PbuG |
| 2048 | SEQF1533.1_AP008937.1 | SEQF1533.1_02150 | open | 285 [NA] | 94 [AA] | 2059876-2060160 | hypothetical protein | |
| 2049 | SEQF1533.1_AP008937.1 | SEQF1533.1_02151 | open | 1158 [NA] | 385 [AA] | 2060162-2061319 | hypothetical protein | |
| 2050 | SEQF1533.1_AP008937.1 | SEQF1533.1_02152 | open | 1143 [NA] | 380 [AA] | 2061316-2062458 | hypothetical protein | |
| 2051 | SEQF1533.1_AP008937.1 | SEQF1533.1_02153 | open | 630 [NA] | 209 [AA] | 2062460-2063089 | Putative 3-methyladenine DNA glycosylase | |
| 2052 | SEQF1533.1_AP008937.1 | SEQF1533.1_02154 | open | 369 [NA] | 122 [AA] | 2063149-2063517 | hypothetical protein | |
| 2053 | SEQF1533.1_AP008937.1 | SEQF1533.1_02155 | open | 186 [NA] | 61 [AA] | 2063808-2063993 | hypothetical protein | |
| 2054 | SEQF1533.1_AP008937.1 | SEQF1533.1_02156 | open | 675 [NA] | 224 [AA] | 2063994-2064668 | kefG | Glutathione-regulated potassium-efflux system ancillary protein KefG |
| 2055 | SEQF1533.1_AP008937.1 | SEQF1533.1_02157 | open | 324 [NA] | 107 [AA] | 2064671-2064994 | hypothetical protein | |
| 2056 | SEQF1533.1_AP008937.1 | SEQF1533.1_02158 | open | 627 [NA] | 208 [AA] | 2065088-2065714 | nnr | Bifunctional NAD(P)H-hydrate repair enzyme Nnr |
| 2057 | SEQF1533.1_AP008937.1 | SEQF1533.1_02159 | open | 558 [NA] | 185 [AA] | 2065895-2066452 | efp | Elongation factor P |
| 2058 | SEQF1533.1_AP008937.1 | SEQF1533.1_02160 | open | 633 [NA] | 210 [AA] | 2066599-2067231 | hypothetical protein | |
| 2059 | SEQF1533.1_AP008937.1 | SEQF1533.1_02161 | open | 192 [NA] | 63 [AA] | 2067410-2067601 | hypothetical protein | |
| 2060 | SEQF1533.1_AP008937.1 | SEQF1533.1_02162 | open | 999 [NA] | 332 [AA] | 2067598-2068596 | degA_3 | HTH-type transcriptional regulator DegA |
| 2061 | SEQF1533.1_AP008937.1 | SEQF1533.1_02163 | open | 2073 [NA] | 690 [AA] | 2069026-2071098 | Autolysin | |
| 2062 | SEQF1533.1_AP008937.1 | SEQF1533.1_02164 | open | 303 [NA] | 100 [AA] | 2071235-2071537 | ziaR | Transcriptional repressor SmtB |
| 2063 | SEQF1533.1_AP008937.1 | SEQF1533.1_02165 | open | 1287 [NA] | 428 [AA] | 2071782-2073068 | ISL3 family transposase ISL3 | |
| 2064 | SEQF1533.1_AP008937.1 | SEQF1533.1_02166 | open | 459 [NA] | 152 [AA] | 2073199-2073657 | argR_2 | Arginine repressor |
| 2065 | SEQF1533.1_AP008937.1 | SEQF1533.1_02167 | open | 693 [NA] | 230 [AA] | 2073818-2074510 | lolD | Lipoprotein-releasing system ATP-binding protein LolD |
| 2066 | SEQF1533.1_AP008937.1 | SEQF1533.1_02168 | open | 1026 [NA] | 341 [AA] | 2074523-2075548 | hypothetical protein | |
| 2067 | SEQF1533.1_AP008937.1 | SEQF1533.1_02169 | open | 603 [NA] | 200 [AA] | 2075508-2076110 | hypothetical protein | |
| 2068 | SEQF1533.1_AP008937.1 | SEQF1533.1_02170 | open | 1011 [NA] | 336 [AA] | 2076267-2077277 | rspB | Starvation-sensing protein RspB |
| 2069 | SEQF1533.1_AP008937.1 | SEQF1533.1_02171 | open | 1563 [NA] | 520 [AA] | 2077573-2079135 | mntH_2 | Divalent metal cation transporter MntH |
| 2070 | SEQF1533.1_AP008937.1 | SEQF1533.1_02172 | open | 735 [NA] | 244 [AA] | 2079519-2080253 | hypothetical protein | |
| 2071 | SEQF1533.1_AP008937.1 | SEQF1533.1_02173 | open | 1806 [NA] | 601 [AA] | 2080569-2082374 | thrS | Threonine--tRNA ligase |
| 2072 | SEQF1533.1_AP008937.1 | SEQF1533.1_02174 | open | 615 [NA] | 204 [AA] | 2082519-2083133 | hypothetical protein | |
| 2073 | SEQF1533.1_AP008937.1 | SEQF1533.1_02175 | open | 879 [NA] | 292 [AA] | 2083139-2084017 | hypothetical protein | |
| 2074 | SEQF1533.1_AP008937.1 | SEQF1533.1_02176 | open | 612 [NA] | 203 [AA] | 2084212-2084823 | spsB | Signal peptidase IB |
| 2075 | SEQF1533.1_AP008937.1 | SEQF1533.1_02177 | open | 1557 [NA] | 518 [AA] | 2084898-2086454 | murE_1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase |
| 2076 | SEQF1533.1_AP008937.1 | SEQF1533.1_02178 | open | 1536 [NA] | 511 [AA] | 2086459-2087994 | murE_2 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase |
| 2077 | SEQF1533.1_AP008937.1 | SEQF1533.1_02179 | open | 1911 [NA] | 636 [AA] | 2087994-2089904 | asnB_2 | Asparagine synthetase [glutamine-hydrolyzing] 1 |
| 2078 | SEQF1533.1_AP008937.1 | SEQF1533.1_02180 | open | 786 [NA] | 261 [AA] | 2090167-2090952 | lysP_2 | Lysine-specific permease |
| 2079 | SEQF1533.1_AP008937.1 | SEQF1533.1_02181 | open | 681 [NA] | 226 [AA] | 2090952-2091632 | lysP_3 | Lysine-specific permease |
| 2080 | SEQF1533.1_AP008937.1 | SEQF1533.1_02182 | open | 378 [NA] | 125 [AA] | 2091743-2092120 | mscL | Large-conductance mechanosensitive channel |
| 2081 | SEQF1533.1_AP008937.1 | SEQF1533.1_02183 | open | 1905 [NA] | 634 [AA] | 2092380-2094284 | mnmG | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG |
| 2082 | SEQF1533.1_AP008937.1 | SEQF1533.1_02184 | open | 1389 [NA] | 462 [AA] | 2094299-2095687 | mnmE | tRNA modification GTPase MnmE |
| 2083 | SEQF1533.1_AP008937.1 | SEQF1533.1_02185 | open | 861 [NA] | 286 [AA] | 2095833-2096693 | hypothetical protein | |
| 2084 | SEQF1533.1_AP008937.1 | SEQF1533.1_02186 | open | 834 [NA] | 277 [AA] | 2096724-2097557 | misCA | Membrane protein insertase MisCA |
| 2085 | SEQF1533.1_AP008937.1 | SEQF1533.1_02187 | open | 345 [NA] | 114 [AA] | 2097573-2097917 | rnpA | Ribonuclease P protein component |
| 2086 | SEQF1533.1_AP008937.1 | SEQF1533.1_02188 | open | 135 [NA] | 44 [AA] | 2098033-2098167 | rpmH | 50S ribosomal protein L34 |
| 2087 | SEQF1533.1_AP008937.1 | SEQF1533.1_02189 | open | 363 [NA] | 120 [AA] | 2098241-2098603 | hypothetical protein |