Home Login Register Reset Password Taxon Description Taxon Table Taxonomic Hierarchy Taxonomic Level Identify 16S rRNA Sequence BLAST Sequence(s) Download 16S rDNA RefSeq Genomes Taxa with Annotated Genomes All Oral Genomes All Genomes Tools & Download HOMD JBrowse Genome Viewer » Select an HOMD genome to view in JBrowse Upload your own reference sequence HOMD only! Demo - See Jbrowse in action. HOMD Genome Viewer (Old Version) Dynamic Genome Annotation BLAST Against HOMD Genomes » BLAST against a selected human oral microbial genome BLAST against all human oral microbial genomes BLAST against all HOMD annotated human oral microbial genomes Dynamic Genome BLAST Download HOMD Data HOMD Posters Oralgen Archive Oralgen Archive Oralgen Genome Info HOMD Information How to Cite HOMD Project Description Strains and DNA Availability People Contact Us Mailing List Usage Statistics Site Map How to Use This Page User's Guide Hands on Guide to HOMD Quick Tour to HOMD 2015 Page: GN1

Genome Explorer Surveyed genome: None Selected tool: View Dynamic Annotation Select a genome: Select a categoryGenomes with dynamic HOMD annotatonGenomes with static annotation onlyCompleted genomesLow coverage genome surveysHigh coverage genomic sequencesAll genomes  Select a genome (total: 461) Abiotrophia defectiva ATCC 49176 Achromobacter xylosoxidans A8 Acinetobacter baumannii AB0057 Actinobaculum sp. oral taxon 183 F0552 Actinomyces cardiffensis F0333 Actinomyces dentalis DSM 19115 Actinomyces georgiae F0490 Actinomyces georgiae DSM 6843 Actinomyces gerencseriae DSM 6844 Actinomyces graevenitzii C83 Actinomyces israelii DSM 43320 Actinomyces johnsonii F0330 Actinomyces massiliensis F0489 Actinomyces massiliensis 4401292 Actinomyces naeslundii MG1 Actinomyces odontolyticus ATCC 17982, DSM 43331 Actinomyces oris K20 Actinomyces sp. oral taxon 170 F0386 Actinomyces sp. oral taxon 171 F0337 Actinomyces sp. oral taxon 172 F0311 Actinomyces sp. oral taxon 175 F0384 Actinomyces sp. oral taxon 178 F0338 Actinomyces sp. oral taxon 180 F0310 Actinomyces sp. oral taxon 181 F0379 Actinomyces sp. oral taxon 448 F0400 Actinomyces sp. oral taxon 848 F0332 Actinomyces sp. oral taxon 877 F0543 Actinomyces timonensis DSM 23838 Actinomyces viscosus C505 Afipia broomeae ATCC 49717 Aggregatibacter actinomycetemcomitans D17P-2 Aggregatibacter actinomycetemcomitans HK1651 Aggregatibacter aphrophilus NJ8700 Aggregatibacter segnis ATCC 33393 Aggregatibacter sp. oral taxon 458 W10330 Agrobacterium tumefaciens str. C58, ATCC 33970 Alloiococcus otitis ATCC 51267 Alloprevotella rava F0323 Alloprevotella tannerae ATCC 51259 Alloscardovia omnicolens DSM 21503 Anaerococcus lactolyticus ATCC 51172 Anaerococcus prevotii DSM 20548, PC1, ATCC 9321 Anaerococcus tetradius ATCC 35098 Anaeroglobus geminatus F0357 Arcanobacterium haemolyticum DSM 20595, CCM, ATCC 9345 Atopobium minutum 10063974 Atopobium parvulum DSM 20469, IPP 1246, ATCC 33793 Atopobium rimae ATCC 49626, VPI D140H-11A Atopobium sp. oral taxon 199 F0494 Atopobium sp. oral taxon 810 F0209 Atopobium vaginae DSM 15829 Bacillus anthracis A0248 Bacillus clausii KSM-K16 Bacillus subtilis BSn5 Bacteroides pyogenes DSM 20611 Bacteroidetes bacterium oral taxon 274 F0058 Bacteroidetes [G-1] oral taxon 272 F0290 Bartonella schoenbuchensis m07a Bifidobacterium animalis subsp. lactis CNCM I-2494 Bifidobacterium animalis subsp. lactis HN019 Bifidobacterium breve UCC2003 Bifidobacterium breve CECT 7263 Bifidobacterium dentium ATCC 27678 Bifidobacterium longum subsp. infantis ATCC 15697 Bifidobacterium longum subsp. longum ATCC 55813 Bifidobacterium subtile DSM 20096 Bordetella pertussis Tohama I, ATCC BAA-589, NCTC-13251 Bradyrhizobium elkanii 587 Bradyrhizobium elkanii USDA 76 Brevundimonas diminuta 470-4, ATCC 13184 Brevundimonas diminuta ATCC 11568 Bulleidia extructa W1219, ATCC BAA-170, DSM 13220 Bulleidia extructa ATCC BAA-170, DSM 13220 Burkholderia cepacia GG4 Campylobacter concisus strain 13826 Campylobacter curvus DSM 6644 Campylobacter curvus 525.92 Campylobacter gracilis RM3268 Campylobacter gracilis ATCC 33236 Campylobacter rectus RM3267 Campylobacter rectus ATCC 33238 Campylobacter showae CSUNSWCD Campylobacter showae RM3277 Campylobacter showae ATCC 51146 Campylobacter ureolyticus DSM 20703 Candidate division SR1 bacterium MGEHA Candidate division TM7 single-cell isolate TM7a Candidate division TM7 single-cell isolate TM7b Candidate division TM7 single-cell isolate TM7c Capnocytophaga gingivalis ATCC 33624 Capnocytophaga granulosa ATCC 51502 Capnocytophaga ochracea DSM 7271, ATCC 27872, JCM 12966 Capnocytophaga sp. oral taxon 324 F0483 Capnocytophaga sp. oral taxon 326 F0382 Capnocytophaga sp. oral taxon 329 F0087 Capnocytophaga sp. oral taxon 332 F0381 Capnocytophaga sp. oral taxon 335 F0486 Capnocytophaga sp. oral taxon 336 F0502 Capnocytophaga sp. oral taxon 338 F0234 Capnocytophaga sp. oral taxon 380 F0488 Capnocytophaga sp. oral taxon 412 F0487 Capnocytophaga sp. oral taxon 863 F0517 Capnocytophaga sputigena ATCC 33612 Cardiobacterium hominis ATCC 15826 Cardiobacterium valvarum F0432 Catonella morbi ATCC 51271 Centipeda periodontii DSM 2778 Chlamydophila pneumoniae TW-183 Chloroflexi bacterium oral taxon 439 isolate Chl2 Clostridiales [F-1][G-1] sp. oral taxon 876 F0540 Comamonas testosteroni KF-1 Corynebacterium diphtheriae NCTC 13129 Corynebacterium durum F0235 Corynebacterium matruchotii ATCC 33806 Corynebacterium urealyticum DSM 7109 Cronobacter sakazakii ATCC BAA-894 Cryptobacterium curtum DSM 15641, ATCC 700683, 12-3T Delftia acidovorans SPH-1, ATCC15668 Desulfobulbus sp. oral taxon 041 Dsb2 Desulfobulbus sp. oral taxon 041 Dsb3 Dialister invisus DSM 15470 Dialister micraerophilus DSM 19965 Dolosigranulum pigrum ATCC 51524 Eggerthella lenta DSM 2243, VPI 0255 Eikenella corrodens ATCC 23834 Enterobacter cancerogenus YZ1 Enterobacter cancerogenus ATCC 35316 Enterobacter hormaechei ATCC 49162 Enterococcus casseliflavus 14-MB-W-14 Enterococcus casseliflavus EC30 Enterococcus durans FB129-CNAB4 Enterococcus durans ATCC 6056 Enterococcus faecalis DSM 20478, ATCC 19433, NCTC 775, JCM 8726, NCDO 58 Enterococcus faecalis V583, ATCC 700802 Enterococcus italicus DSM 15952 Enterococcus saccharolyticus 30_1 Erysipelothrix tonsillarum DSM 14972 Escherichia coli BW2952 Escherichia coli O157:H7 str. EC4115 Eubacterium infirmum F0142 Eubacterium infirmum ATCC 700433, NCTC 12940 Eubacterium limosum KIST612 Eubacterium saphenum ATCC 49989 Eubacterium yurii subsp. margaretiae ATCC 43715 Filifactor alocis ATCC 35896 Finegoldia magna ATCC 29328 Finegoldia magna BVS033A4 Fretibacterium fastidiosum SGP1 Fusobacterium gonidiaformans 3-1-5R Fusobacterium gonidiaformans ATCC 25563 Fusobacterium necrophorum subsp. funduliforme 1_1_36S Fusobacterium nucleatum subsp. animalis F0419 Fusobacterium nucleatum subsp. animalis 4_8 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fusobacterium nucleatum subsp. polymorphum ATCC 10953 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Fusobacterium periodonticum ATCC 33693 Fusobacterium periodonticum 1_1_41FAA Fusobacterium sp. oral taxon 370 F0437 Gardnerella vaginalis ATCC 14019 Gemella bergeriae ATCC 700627 Gemella haemolysans M341 Gemella haemolysans ATCC 10379 Gemella morbillorum M424 Gemella sanguinis M325 Granulicatella adiacens ATCC 49175 Granulicatella elegans ATCC 700633 Haemophilus aegyptius ATCC 11116 Haemophilus ducreyi 35000HP Haemophilus haemolyticus M21639 Haemophilus influenzae PittGG Haemophilus parainfluenzae T3T1 Haemophilus parainfluenzae ATCC 33392 Haemophilus sp. oral taxon 851 F0397 Helicobacter pylori India7 Helicobacter pylori B38 Johnsonella ignava ATCC 51276 Jonquetella anthropi DSM 22815 Jonquetella anthropi E3_33 E1 Kingella denitrificans ATCC 33394 Kingella kingae ATCC 23330 Kingella oralis ATCC 51147 Klebsiella pneumoniae 342 Klebsiella pneumoniae NTUH-K2044 Kytococcus sedentarius DSM 20547 Lachnospiraceae bacterium Oral taxon 107 F0167 Lachnospiraceae bacterium sp. oral taxon 082 F0431 Lactobacillus acidophilus NCFM Lactobacillus brevis ATCC 367 Lactobacillus buchneri NRRL B-30929 Lactobacillus buchneri ATCC 11577 Lactobacillus casei BL23 Lactobacillus catenaforme OT 569 = DSM 20559 Lactobacillus coleohominis 101-4-CHN Lactobacillus crispatus ST1 Lactobacillus fermentum IFO 3956 Lactobacillus gasseri ATCC 33323 Lactobacillus iners DSM 13335 Lactobacillus jensenii 1153 Lactobacillus johnsonii NCC 533 Lactobacillus kisonensis F0435 Lactobacillus oris PB013-T2-3 Lactobacillus paracasei subsp. paracasei 8700:2 Lactobacillus parafarraginis F0439 Lactobacillus pentosus KCA1 Lactobacillus plantarum subsp. plantarum ATCC 14917 Lactobacillus plantarum subsp. plantarum ST-III Lactobacillus reuteri JCM 1112, F275 Lactobacillus rhamnosus GG Lactobacillus salivarius UCC118 Lactobacillus vaginalis ATCC 49540 Lactococcus lactis subsp. lactis IL1403 Lactococcus lactis subsp. lactis KF147 Lautropia mirabilis ATCC 51599 Leptotrichia buccalis ATCC 14201 Leptotrichia buccalis C-1013-b, DSM 1135, ATCC 14201, JCM 1296 Leptotrichia goodfellowii F0264 Leptotrichia goodfellowii DSM 19756 Leptotrichia hofstadii F0254 Leptotrichia hofstadii DSM 21651 Leptotrichia shahii DSM 19757 Leptotrichia sp. oral taxon 215 W9775 Leptotrichia sp. oral taxon 225 F0581 Leptotrichia sp. oral taxon 879 F0557 Leptotrichia wadei DSM 19758 Listeria monocytogenes 08-5578 Listeria monocytogenes serotype 4b str. CLIP 80459 Lysinibacillus fusiformis ZC1 Megasphaera micronuciformis F0359 Mesorhizobium loti MAFF303099 Methanobrevibacter oralis JMR01 Microbacterium sp. oral taxon 186 F0373 Mitsuokella multacida DSM 20544, A 405-1, ATCC 27723, NCTC 10 Mitsuokella sp. oral taxon 131 W9106 Mobiluncus mulieris ATCC 35243 Mogibacterium timidum ATCC 33093 Moraxella catarrhalis RH4 Mycobacterium leprae Br4923 Mycobacterium neoaurum VKM Ac-1815D Mycobacterium tuberculosis CDC1551 Mycoplasma fermentans M64 Mycoplasma fermentans JER Mycoplasma genitalium G37, ATCC 33530 Mycoplasma hominis ATCC 27545 Mycoplasma hominis ATCC 23114 Mycoplasma orale ATCC 23714 Mycoplasma pneumoniae M129, ATCC29342 Mycoplasma salivarium ATCC 23064 Neisseria bacilliformis ATCC BAA-1200 Neisseria elongata ATCC 29315 Neisseria flavescens NRL30031/H210 Neisseria gonorrhoeae NCCP11945 Neisseria gonorrhoeae DGI2 Neisseria lactamica ATCC 23970 Neisseria lactamica 020-06 Neisseria meningitidis MC58 Neisseria meningitidis ATCC 13091 Neisseria mucosa ATCC 25996 Neisseria polysaccharea ATCC 43768 Neisseria sicca ATCC 29256 Neisseria sp. oral taxon 014 F0314 Neisseria sp. oral taxon 020 F0370 Neisseria subflava NJ9703 Neisseria weaveri ATCC 51223 Ochrobactrum anthropi ATCC 49188 Ochrobactrum anthropi Olsenella profusa F0195 Olsenella sp. oral taxon 809 F0356 Olsenella uli DSM 7084, VPI, ATCC 49627 Oribacterium sinus F0268 Oribacterium sp. oral taxon 078 F0262 Oribacterium sp. oral taxon 108 F0425 Paenibacillus sp. oral taxon 786 D14 Parascardovia denticolens DSM 10105 Parascardovia denticolens F0305 Parvimonas micra ATCC 33270 Parvimonas sp. oral taxon 110 F0139 Parvimonas sp. oral taxon 393 F0440 Peptoniphilus indolicus ATCC 29427 Peptoniphilus lacrimalis DSM 7455 Peptoniphilus lacrimalis 315-B Peptoniphilus sp. oral taxon 375 F0436 Peptoniphilus sp. oral taxon 386 F0131 Peptoniphilus sp. oral taxon 836 F0141 Peptostreptococcaceae [13][G-1] sp. oral taxon 113 W5053 Peptostreptococcus anaerobius 653-L Peptostreptococcus anaerobius DSM 2949 Peptostreptococcus stomatis DSM 17678, W2278 Porphyromonas asaccharolytica PR426713P-I Porphyromonas asaccharolytica DSM 20707 Porphyromonas catoniae F0037 Porphyromonas endodontalis ATCC 35406 Porphyromonas gingivalis W83 Porphyromonas gingivalis ATCC 33277 Porphyromonas sp. oral taxon 278 W7784 Porphyromonas sp. oral taxon 279 F0450 Porphyromonas uenonis 60-3 Porphyromonas uenonis JCM 13868 Prevotella baroniae JCM 13447 Prevotella baroniae DSM 16972 Prevotella bivia DSM 20514 Prevotella bivia JCVIHMP010 Prevotella buccae D17 Prevotella buccalis ATCC 35310 Prevotella dentalis DSM 3688 Prevotella denticola F0289 Prevotella denticola DSM 20614 Prevotella denticola JCM 13449 Prevotella enoeca JCM 12259 Prevotella fusca JCM 17724 Prevotella histicola F0411 Prevotella histicola JCM 15637 = DNF00424 Prevotella intermedia 17 Prevotella intermedia ATCC 25611 = DSM 20706 Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 Prevotella maculosa OT 289, F0099 Prevotella maculosa DSM 19339 Prevotella maculosa JCM 15638 Prevotella marshii DSM 16973 Prevotella marshii JCM 13450 Prevotella melaninogenica D18 Prevotella melaninogenica ATCC 25845 Prevotella micans JCM 16134 Prevotella micans F0438 Prevotella micans DSM 21469 Prevotella multiformis DSM 16608 Prevotella multisaccharivorax DSM 17128 Prevotella nigrescens ATCC 33563 Prevotella oralis ATCC 33269 Prevotella oris DSM 18711 Prevotella oris JCM 12252 Prevotella oris F0302 Prevotella oulorum F0390 Prevotella oulorum JCM 14966 Prevotella pallens ATCC 700821 Prevotella pleuritidis F0068 Prevotella saccharolytica F0055 Prevotella saccharolytica JCM 17484 Prevotella salivae DSM 15606 Prevotella scopus JCM 17725 Prevotella shahii JCM 12083 Prevotella sp. oral taxon 299 F0039 Prevotella sp. oral taxon 302 F0020 Prevotella sp. oral taxon 306 F0472 Prevotella sp. oral taxon 317 F0108 Prevotella sp. oral taxon 472 F0295 Prevotella sp. oral taxon 473 F0040 Prevotella veroralis DSM 19559 Prevotella veroralis F0319 Prevotella veroralis JCM 6290 Propionibacterium acidifaciens DSM 21887 Propionibacterium acnes SK137 Propionibacterium avidum ATCC 25577 Propionibacterium avidum 44067 Propionibacterium propionicum F0230a Propionibacterium sp. oral taxon 192 F0372 Proteus mirabilis ATCC 29906 Proteus mirabilis HI4320 Pseudomonas aeruginosa LESB58 Pseudomonas fluorescens Pf-5 Pseudomonas fluorescens Pf0-1 Pseudomonas otitidis Pseudomonas pseudoalcaligenes KF707 Pseudomonas stutzeri A1501, CGMCC 0351 Pseudoramibacter alactolyticus ATCC 23263 Pyramidobacter piscolens W5455 (JCVI) Pyramidobacter piscolens W5455 (TFI-JCVI) Pyramidobacter piscolens W5455 (TFI) Pyramidobacter piscolens W5455, DSM 21147, CCUG 55836, F0317 Ralstonia pickettii 12D Rhodobacter capsulatus SB 1003 Rothia aeria F0474 Rothia dentocariosa ATCC 17931 Rothia dentocariosa M567 Rothia mucilaginosa DY-18 Rothia mucilaginosa ATCC 25296 Sanguibacter keddieii DSM 10542 Scardovia inopinata F0304, DSM 10107 Scardovia wiggsiae F0424 Selenomonas artemidis F0399 Selenomonas artemidis DSM 19719 Selenomonas flueggei ATCC 43531 Selenomonas infelix ATCC 43532 Selenomonas noxia ATCC 43541 Selenomonas sp. oral taxon 133 F0473 Selenomonas sp. oral taxon 137 F0430 Selenomonas sp. oral taxon 138 F0429 Selenomonas sp. oral taxon 149 67H29BP, F0410 Selenomonas sp. oral taxon 892 F0426 Selenomonas sputigena ATCC 35185 Shuttleworthia satelles DSM 14600, BAA-774, CCUG 45864 Simonsiella muelleri ATCC 29453 Slackia exigua ATCC 700122 Solobacterium moorei F0204 Solobacterium moorei DSM 22971 Solobacterium moorei W5408 Staphylococcus aureus subsp. aureus WW2703/97 Staphylococcus aureus subsp. aureus JH1 Staphylococcus caprae C87 Staphylococcus epidermidis RP62A, ATCC 35984 Staphylococcus epidermidis W23144 Staphylococcus warneri L37603 Stenotrophomonas maltophilia K279a Stenotrophomonas maltophilia R551-3 Stomatobaculum longum ACC2 Streptococcus agalactiae NEM316 Streptococcus anginosus CCUG 39159 Streptococcus anginosus SK52 Streptococcus australis ATCC 700641 Streptococcus constellatus subsp. pharyngis SK1060 Streptococcus cristatus ATCC 51100 Streptococcus downei F0415 Streptococcus gordonii Challis CH1, ATCC 35105, NCTC7868 Streptococcus infantarius subsp. infantarius ATCC BAA-102 Streptococcus infantis X Streptococcus intermedius JTH08 Streptococcus intermedius F0413 Streptococcus mitis B6 Streptococcus mitis NCTC 12261 Streptococcus mitis ATCC 6249 Streptococcus mitis bv. 2 SK95 Streptococcus mutans UA159, ATCC 700610 Streptococcus oligofermentans AS 1.3089 Streptococcus oralis ATCC 35037, SK23, NCTC11427 Streptococcus oralis Uo5 Streptococcus parasanguinis ATCC 15912 Streptococcus parasanguinis II F0405 Streptococcus peroris ATCC 700780 Streptococcus pneumoniae AP200 Streptococcus pyogenes MGAS10270 Streptococcus pyogenes NZ131 Streptococcus salivarius SK126 Streptococcus salivarius CCHSS3, JIM8780 Streptococcus sanguinis SK36 Streptococcus sobrinus TCI-107 Streptococcus sp. oral taxon 056 F0418 Streptococcus sp. oral taxon 058 F0407 Streptococcus sp. oral taxon 066 F0442 Streptococcus sp. oral taxon 070 F0441 Streptococcus sp. oral taxon 071 73H25AP, F0408 Streptococcus vestibularis F0396 Tannerella forsythia 92A2 not ATCC 43037, FDC 338 Tannerella forsythia ATCC 43037, FDC 338 Tannerella sp. oral taxon BU063 isolate Cell 5 Treponema denticola ATCC 35405, DSM 14222 Treponema lecithinolyticum OMZ 684T Treponema maltophilum ATCC 51939 Treponema medium ATCC 700293 Treponema pallidum subsp. pallidum str. Nichols Treponema socranskii subsp. paredis ATCC 35535 Treponema vincentii ATCC 35580 Turicella otitidis ATCC 51513 Variovorax paradoxus S110 Veillonella atypica ACS-134-V-Col7a Veillonella dispar ATCC 17748 Veillonella parvula ATCC 17745 Veillonella parvula DSM 2008, Te3, ATCC 10790, JCM 1297 Veillonella sp. oral taxon 158 F0412 Veillonella sp. oral taxon 780 F0422 Yersinia pestis Antiqua JGI Yersinia pestis KIM D27

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