16S rRNA Refseq V15.2 Genomic RefSeq V9.03

This forum is locked: you cannot post, reply to, or edit topics.   This topic is locked: you cannot edit posts or make replies.
View previous topic Printable version Log in to check your private messages View next topic
Author Message
Post subject: Genome Annotation Update - Selenomonas sputigena ATCC 35185  PostPosted: Feb 26, 2016 - 06:54 PM

Joined: Dec 31, 1969
Posts: 16777215

Automatic annotation for the genome - Selenomonas sputigena ATCC 35185 has been updated. Please visit HOMD web site to view the genome:
Link to HOMD Genome Viewer
Link to HOMD Dynamic Annotation

Summary of the annotation:

Full Name: Selenomonas sputigena ATCC 35185

Total contigs received: 61
Total bps received: 2553953
Average GC%: 57.12 (of total bps received)

Longest contig: 339074 bps
Shortest contig: 452 bps
Contigs 300 - 300 bps: 0
Contigs 301 - 500 bps: 3
Contigs 501 - 1000 bps: 5
Contigs 1001 - 1500 bps: 2
Contigs > 1500 bps: 50

Total ORFs*: 2375

Total BLASTP hits against NCBI nr: 2338
NCBI nr protein database dated: 2014-12-02

Total BLASTP hits against SwissProt: 1647
SwissProt protein database dated: 2014-12-01

ORFs with KEGG hits: 599
ORFs with GO hits: 230

* Minimal size of ORFs annotated by GeneMarkS = 50 a.a. (150 n.a.)

Please address your questions to homd_curator@homd.org

~The HOMD Team~
 View user's profile Send private message  
Reply with quote Back to top
Display posts from previous:     
Jump to:  
Powered by PNphpBB2 © 2003-2006 The PNphpBB Group
Copyright 2007-2020 The Forsyth Institute
Hosted on Amazon AWS EC2