16S rRNA Refseq V15.22 Genomic RefSeq V9.14
HOMD User Documentation     
Table of Content:
User Documentation
+Overview
+Taxon Description
+Identify 16S rRNA Sequence
+Genomes
+Tools & Download
 >Genomics Tools Overview
 >HOMD Genome Viewer
 >HOMD JBrowse Genome Viewer
 >Dynamic Genome Annotation
 +Blast against Genomes
  >BLAST databases
  >BLAST Search main parameters
  >FASTA format description
  >Full list of the BLAST Advanced options
  >Matrix
  >Out-Of-Frame BLAST notation
  >BLAST Color schema description
  >Programs available for the BLAST search
  >Low complexity filtering
 >HOMD Dynamic Genomic BLAST
 >KEGG Pathway
 >Gene Ontology
 >Sequence Batch Download
+Database Search
General Documentation
+HOMD Information
+Announcement
 
Search Documentation:
Input Keywords:
Title Content
4-3] BLAST databases
Databases available for BLAST searches:

"XXXX XXXX" contigs Blast against the whole sequence of "XXXX XXXX"
"XXXX XXXX" ORFs (na)Blast against o­nly orfs nucleotides of "XXXX XXXX"
"XXXX XXXX" ORFs (aa)Blast against o­nly orfs amino acids of "XXXX XXXX"
All oral genomes contigs Blast against the whole sequences of genomes annotated automatically by HOMD
All oral genomes ORFs (na)Blast against the orfs nucleotides of genomes annotated automatically by HOMD
All oral genomes ORFs (aa)Blast against the orfs amino acids of genomes annotated automatically by HOMD
nrBlast against NCBI non-redundant protein database (nr) - weekly updated
ntBlast against NCBI non-redundant nucleotide database (nt) - weekly updated
Article last modified on 2014-04-08 11:00:37 by lyang; viewed 746 times; Category: User Documentation; Topic: Tools & Downloa
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