16S rRNA Refseq V15.22 Genomic RefSeq V9.14
HOMD User Documentation     
Table of Content:
User Documentation
+Overview
+Taxon Description
+Identify 16S rRNA Sequence
+Genomes
+Tools & Download
 >Genomics Tools Overview
 >HOMD Genome Viewer
 >HOMD JBrowse Genome Viewer
 >Dynamic Genome Annotation
 +Blast against Genomes
  >BLAST databases
  >BLAST Search main parameters
  >FASTA format description
  >Full list of the BLAST Advanced options
  >Matrix
  >Out-Of-Frame BLAST notation
  >BLAST Color schema description
  >Programs available for the BLAST search
  >Low complexity filtering
 >HOMD Dynamic Genomic BLAST
 >KEGG Pathway
 >Gene Ontology
 >Sequence Batch Download
+Database Search
General Documentation
+HOMD Information
+Announcement
 
Search Documentation:
Input Keywords:
Title Content
4-94] BLAST Color schema description
  • Color schema 1:
    • masked regions in lower case
    • everything else in upper case
  • Color schema 2:
    • masked regions in lower case, gray letters
    • Unaligned regions in italic
    • everything else in upper case
  • Color schema 3:
    • No middle line.
    • Masked regions in lower case, gray letters unless identity
    • Everything else in upper case
    • Unaligned regions in italic
    • Identity shown in red color
    • Similarity shown in blue color
    • Mismatches shown in black color
  • Color schema 4:
    • No middle line.
    • Masked regions in lower case, gray letters
    • Everything else in upper case
    • Unaligned regions in italic
    • Identity shown in blue color
    • Similarity shown in brown color
    • Mismatches shown in red color
  • Color schema 5:
    • No middle line.
    • Masked regions in lower case, gray letters
    • Everything else in upper case
    • Unaligned regions in italic
    • Identity shown in red color
    • Similarity shown in blue color
    • Mismatches shown in black color
  • Color schema 6:
    • No middle line.
    • Masked regions in lower case, gray letters unless identity
    • Everything else in upper case
    • Unaligned regions in italic
    • Identity shown in red bold color
    • Similarity shown in blue color
    • Mismatches shown in gray color
Article last modified on 2014-04-08 11:01:26 by lyang; viewed 1945 times; Category: User Documentation; Topic: Tools & Downloa
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