BlastP Results against NCBI Non-Redudant Protein Database (nr) (Archive Annotation)
Genome selected:  Lactobacillus acidophilus NCFM    [NCBI]    Total base pairs: 1993560 bps Sequence date: 2011-10-06
GC %: 34.71 Total contig(s): 1 Annotation date: 2013-09-20
Total significant BLAST hits: 2037 of 4804 ORFs identified in 1 contig

Total records found in the database: 2069 items
Display filter:  
All contigs 

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Items 1 - 20
 of 104 
Archive ORF ID Links*SequencesBest definition 1Blast top hit 2Top hit organism 3Score 4DescendingEvalue 4
laci_c_1_3217I    NA AAmucus binding protein precursor Mubmucus binding protein precursor MubLactobacillus acidophilus86620
laci_c_1_1278I    NA AAmucus binding proteinmucus binding proteinLactobacillus acidophilus52810
laci_c_1_2932I    NA AAsurface proteinsurface proteinLactobacillus acidophilus47190
laci_c_1_1282I    NA AAmucus binding proteinmucus binding proteinLactobacillus acidophilus45800
laci_c_1_2892I    NA AAsurface proteinsurface proteinLactobacillus acidophilus38410
laci_c_1_3055I    NA AAPrtPPrtPLactobacillus acidophilus33170
laci_c_1_2895I    NA AAsurface proteinsurface proteinLactobacillus acidophilus33050
laci_c_1_617I    NA AArestriction endonucleaserestriction endonucleaseLactobacillus acidophilus30820
laci_c_1_3394I    NA AADNA polymerase III subunit alphaDNA polymerase III subunit alphaLactobacillus acidophilus29710
laci_c_1_2754I    NA AAGram-positive signal peptide protein, YS ...hypothetical protein LBA1740Lactobacillus acidophilus27950
laci_c_1_1362I    NA AAhelicasehelicaseLactobacillus acidophilus25410
laci_c_1_355I    NA AADNA-directed RNA polymerase subunit beta ...DNA-directed RNA polymerase subunit beta ...Lactobacillus acidophilussNCFM25100
laci_c_1_352I    NA AADNA-directed RNA polymerase subunit betaDNA-directed RNA polymerase subunit betaLactobacillus acidophilussNCFM24930
laci_c_1_3495I    NA AAATP-dependent exonuclease subunit AATP-dependent exonuclease subunit ALactobacillus acidophilus24670
laci_c_1_2885I    NA AAmembrane proteinmembrane proteinLactobacillus acidophilus24570
laci_c_1_2800I    NA AAmucus binding protein precursor Mubmucus binding protein precursor MubLactobacillus acidophilus24240
laci_c_1_2794I    NA AAthermostable pullulanasethermostable pullulanaseLactobacillus acidophilus24230
laci_c_1_2857I    NA AAmucus binding protein precursor Mubmucus binding protein precursor MubLactobacillus acidophilus23820
laci_c_1_329I    NA AAtranscriptional repair coupling factortranscriptional repair coupling factorLactobacillus acidophilussNCFM23780
laci_c_1_3494I    NA AAATP-dependent exonuclease subunit BATP-dependent exonuclease subunit BLactobacillus acidophilus23730
Items 1 - 20
 of 104 
 † Several columns are sortable - click the column names to toggle sort order
  P: Partial ORF (no start and/or stop codons); I: Intact ORF (has start and stop)
 *  Graphical Viewer;   JBrowse;    Detail ORF Info
1 Definition of the best meaningful hit (Excluding unknown, conserved or hypothetical proteins).
2 First definition from top of the Blast hits that showed some functional implication.
3 Organism name associated with the blast top hit. Shift to the next hit if match to self-proteins.
4 Score and Evalue are based on the blast top hit.

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