HOMD :: Human Oral Microbiome Database

Bacillus

anthracis

Ames

SEQF1037

5,227,293

35.4

HOMD

Bacillus

anthracis

Ames Ancestor

SEQF1038

5,503,926

35.2

HOMD

Rothia

mucilaginosa

ATCC 25296

SEQF1039

2,255,158

59.5

HOMD

Bacillus

anthracis

CNEVA-9066

SEQF1040

5,488,676

35.2

PROKKA

HOMD

Bacillus

anthracis

Sterne

SEQF1041

5,228,663

35.4

HOMD

Bacillus

anthracis

Vollum

SEQF1042

5,488,459

35.2

PROKKA

HOMD

Bacillus

anthracis

Western North America USA6153

SEQF1043

5,511,345

35.2

PROKKA

HOMD

Bacillus

anthracis

str. Kruger B

SEQF1044

5,470,007

35.2

PROKKA

HOMD

Shuttleworthia

satelles

DSM 14600, BAA-774, CCUG 45864

SEQF1045

2,169,477

51.3

HOMD

Bacillus

anthracis

strain A2012

SEQF1046

5,093,554

35.8

PROKKA

HOMD

Listeria

monocytogenes

1/2a F6854

SEQF1050

133

2,950,285

37.9

HOMD

Listeria

monocytogenes

4b F2365

SEQF1051

2,905,187

38.0

HOMD

Listeria

monocytogenes

4b H7858

SEQF1052

181

2,972,254

38.0

HOMD

Listeria

monocytogenes

08-5578

SEQF1053

3,109,678

37.9

HOMD

Yersinia

pestis

Antiqua JGI

SEQF1054

4,879,836

47.7

HOMD

Yersinia

pestis

CO92

SEQF1055

4,829,855

47.6

HOMD

Yersinia

pestis

KIM10+

SEQF1056

4,701,745

47.7

HOMD

Yersinia

pestis

Nepal516

SEQF1057

4,646,286

47.6

HOMD

Veillonella

parvula

ATCC 17745

SEQF1058

353

371,505

38.4

NCBI

HOMD

Streptococcus

pneumoniae

G54

SEQF1059

2,078,953

39.7

HOMD

Treponema

lecithinolyticum

OMZ 684T

SEQF1060

1,377

1,468,573

44.7

NCBI

HOMD

HMT-584

Treponema

denticola

ATCC 35405, DSM 14222

SEQF1061

2,843,201

37.9

HOMD

Treponema

pallidum

str. Nichols

SEQF1062

1,138,011

52.8

HOMD

Actinomyces

naeslundii

MG1

SEQF1063

3,042,856

68.5

NCBI

HOMD

HMT-619

Porphyromonas

gingivalis

W83

SEQF1064

2,343,476

48.3

HOMD

Prevotella

intermedia

SEQF1065

2,699,437

43.5

HOMD

Streptococcus

gordonii

Challis CH1, ATCC 35105, NCTC7868

SEQF1066

2,196,662

40.5

HOMD

Streptococcus

mitis

SEQF1067

2,146,611

40.0

HOMD

Streptococcus

mitis

NCTC 12261

SEQF1068

2,045,857

40.7

NCBI

HOMD

HMT-686

Streptococcus

mutans

UA159, ATCC 700610

SEQF1069

2,032,925

36.8

HOMD

Streptococcus

sanguinis

SK36

SEQF1070

2,388,435

43.4

HOMD

Streptococcus

sobrinus

6715

2,200,000

PROKKA

NCBI

HOMD

HMT-613

Tannerella

forsythia

92A2 not ATCC 43037, FDC 338

SEQF1072

3,405,521

47.0

HOMD

Lactobacillus

acidophilus

NCFM

SEQF1073

1,993,560

34.7

HOMD

Aggregatibacter

actinomycetemcomitans

HK1651

SEQF1074

2,105,503

44.4

HOMD

Fusobacterium

nucleatum subsp. polymorphum

ATCC 10953

SEQF1075

2,441,632

26.9

HOMD

Fusobacterium

nucleatum subsp. vincentii

ATCC 49256

SEQF1076

302

2,118,259

27.3

HOMD

Fusobacterium

nucleatum subsp. nucleatum

ATCC 25586

SEQF1078

2,174,500

27.2

HOMD

Enterococcus

faecalis

DSM 20478, ATCC 19433, NCTC 775, JCM 8726, NCDO 58

SEQF1079

225

91,964

41.7

NCBI

HOMD

HMT-604

Enterococcus

faecalis

V583, ATCC 700802

SEQF1080

3,359,974

37.4

HOMD

Enterococcus

faecalis

122,000

PROKKA

NCBI

HOMD

HMT-827

Yersinia

pestis

biovar Microtus str. 91001

SEQF1082

4,803,217

47.7

HOMD

Anaerococcus

prevotii

DSM 20548, PC1, ATCC 9321

SEQF1083

1,998,633

35.6

HOMD

Atopobium

parvulum

DSM 20469, IPP 1246, ATCC 33793

SEQF1084

1,543,805

45.7

HOMD

Bordetella

pertussis

Tohama I, ATCC BAA-589, NCTC-13251

SEQF1086

4,086,189

67.7

HOMD

Agrobacterium

tumefaciens

biovar II K84

SEQF1087

7,273,300

59.9

HOMD

Bulleidia

extructa

ATCC BAA-170, DSM 13220

SEQF1088

350

385,332

36.8

NCBI

HOMD

HMT-748

Campylobacter

rectus

ATCC 33238

SEQF1089

356

353,298

44.9

NCBI

HOMD

HMT-763

Campylobacter

showae

ATCC 51146

SEQF1091

352

339,586

44.1

NCBI

HOMD

HMT-684

Mitsuokella

multacida

DSM 20544, A 405-1, ATCC 27723, NCTC 10

SEQF1092

2,577,056

58.1

HOMD

Atopobium

vaginae

CCUG 38953 ATCC BAA-55

PROKKA

NCBI

HOMD

HMT-818

Lactobacillus

reuteri clade 818

F275, JCM 1112, DSM 20016

SEQF1095

1,999,618

38.9

HOMD

Mycobacterium

tuberculosis

F11 (ExPEC)

SEQF1096

4,424,435

65.6

HOMD

Yersinia

pestis

Pestoides F

SEQF1099

4,725,862

47.7

HOMD

Neisseria

meningitidis

053442

SEQF1100

2,153,416

51.7

HOMD

Gardnerella

vaginalis

594, ATCC 14018, NCTC 10287

SEQF1101

145

1,604,161

41.2

PROKKA

HOMD

Moraxella

catarrhalis

RH4

SEQF1102

1,863,286

41.7

HOMD

Dialister

invisus

DSM 15470

SEQF1103

1,895,960

45.5

HOMD

Lactobacillus

jensenii

JV-V16

SEQF1104

1,604,632

34.6

HOMD

Escherichia

coli

NC-7

4,000,000

PROKKA

NCBI

HOMD

Escherichia

coli

str. K12 substr. DH10B

4,686,137

PROKKA

HOMD

Peptostreptococcaceae [XI][G-1]

[Eubacterium] infirmum

ATCC 700433, NCTC 12940

SEQF1108

413

408,875

40.1

NCBI

HOMD

HMT-621

Neisseria

gonorrhoeae

NCCP11945

SEQF1109

2,236,178

52.4

HOMD

Haemophilus

influenzae

22.1-24

1,000,000

PROKKA

NCBI

HOMD

Haemophilus

influenzae

6P18H1

SEQF1111

1,912,236

38.2

HOMD

Haemophilus

influenzae

7P49H1

SEQF1112

1,827,667

37.9

HOMD

Haemophilus

influenzae

NML-20

1,000,000

PROKKA

NCBI

HOMD

Haemophilus

influenzae

R1838

1,000,000

PROKKA

NCBI

HOMD

Haemophilus

influenzae

R393

1,000,000

PROKKA

NCBI

HOMD

Streptococcus

pneumoniae

CGSP14

SEQF1116

2,209,198

39.5

HOMD

Helicobacter

pylori

HPKX_438_AG0C1

SEQF1117

2,602

1,819,663

39.5

PROKKA

HOMD

Helicobacter

pylori

HPKX_438_CA4C1

SEQF1118

3,766

1,566,388

39.2

PROKKA

HOMD

Helicobacter

pylori

Shi470

SEQF1119

1,608,548

38.9

HOMD

Lactobacillus

reuteri clade 818

100-23

SEQF1120

2,305,557

38.7

HOMD

Lactobacillus

reuteri clade 818

JCM 1112, F275

SEQF1121

2,039,414

38.9

HOMD

Mycobacterium

tuberculosis

02_1987

SEQF1122

215

4,443,138

65.3

PROKKA

HOMD

Mycobacterium

tuberculosis

210

SEQF1123

130

4,395,332

65.4

PROKKA

HOMD

Mycobacterium

tuberculosis

94_M4241A

SEQF1124

192

4,410,654

65.3

PROKKA

HOMD

Mycobacterium

tuberculosis

SEQF1125

160

4,276,200

65.4

PROKKA

HOMD

Methanobrevibacter

oralis

PROKKA

NCBI

HOMD

HMT-822

Mycobacterium

tuberculosis

EAS054

SEQF1127

125

4,366,920

65.3

PROKKA

HOMD

Mycobacterium

tuberculosis

H37Ra

SEQF1128

272

4,326,442

65.3

PROKKA

HOMD

Mycobacterium

tuberculosis

H37Ra

SEQF1129

4,419,977

65.6

HOMD

Mycobacterium

tuberculosis

KZN 1435

SEQF1130

4,398,250

65.6

HOMD

Mycobacterium

tuberculosis

KZN 4207

SEQF1131

4,383,975

65.6

PROKKA

HOMD

Mycobacterium

tuberculosis

KZN 605

SEQF1132

4,399,120

65.6

HOMD

Mycobacterium

tuberculosis

T85

SEQF1133

324

4,299,331

65.3

PROKKA

HOMD

Mycobacterium

tuberculosis

T92

SEQF1134

563

4,260,358

65.1

PROKKA

HOMD

Mycobacterium

tuberculosis

str. Haarlem

SEQF1135

4,347,292

65.3

PROKKA

HOMD

Bacillus

anthracis

'34F2

PROKKA

NCBI

HOMD

Escherichia

coli

O157:H7 str. TW14588

SEQF1137

5,671,197

50.5

HOMD

Bacillus

anthracis

'34F2

PROKKA

NCBI

HOMD

Bacillus

anthracis

Tsiankovskii-I

SEQF1139

5,504,728

35.2

HOMD

Bacillus

anthracis

str. A0174

SEQF1140

5,291,908

35.2

HOMD

Bacillus

anthracis

str. A0193

SEQF1141

5,392,880

35.1

HOMD

Prevotella

melaninogenica

ATCC 25845

SEQF1142

3,168,282

41.0

HOMD

Bacillus

anthracis

str. A0389

SEQF1143

5,420,403

35.2

HOMD

Bacillus

subtilis

str. L170

4,000,000

PROKKA

NCBI

HOMD

Bacillus

subtilis

subsp.

4,000,000

PROKKA

NCBI

HOMD

Bacillus

anthracis

str. A0442

SEQF1150

5,374,836

35.2

HOMD

Bacillus

anthracis

str. A0465

SEQF1151

5,407,149

35.2

HOMD

Solobacterium

moorei

W5408

SEQF1152

338

353,572

38.1

NCBI

HOMD

Bacillus

anthracis

str. A0488

SEQF1153

5,392,168

35.2

HOMD

Bacillus

anthracis

str. A1055

SEQF1155

5,370,618

35.3

PROKKA

HOMD

Mogibacterium

timidum

PROKKA

NCBI

HOMD

Dialister

invisus

1,884,000

PROKKA

NCBI

HOMD

Bacillus

anthracis

str. Australia 94

SEQF1158

5,504,562

35.2

PROKKA

HOMD

Veillonella

dispar

ATCC 17748

SEQF1159

2,118,767

38.9

HOMD

Fusobacterium

periodonticum

ATCC 33693

SEQF1160

2,615,003

28.7

HOMD

Acinetobacter

baumannii

SDF

SEQF1161

3,477,996

39.1

HOMD

Acinetobacter

baumannii

VEB

PROKKA

NCBI

HOMD

HMT-554

Acinetobacter

baumannii

AYE

SEQF1164

4,048,735

39.3

HOMD

Neisseria

subflava

NJ9703

SEQF1165

2,292,986

49.0

HOMD

Neisseria

elongata

ATCC 29315

SEQF1166

153

2,275,949

54.0

HOMD

Agrobacterium

tumefaciens

str. C58, ATCC 33970

SEQF1167

5,674,258

59.0

HOMD

Agrobacterium

tumefaciens

C58-UWash, ATCC 33970

2,841,000

PROKKA

HOMD

Atopobium

minutum

ATCC 33267

1,965,000

PROKKA

NCBI

HOMD

HMT-045

Bacillus

clausii

KSM-K16

SEQF1170

4,303,871

44.8

HOMD

Bacillus

subtilis

NCIB3610

SEQF1171

4,292,784

43.4

PROKKA

HOMD

Bacillus

subtilis

RO-NN-1 (168 group)

PROKKA

NCBI

HOMD

HMT-468

Bacillus

subtilis

BSn5

SEQF1173

4,093,599

43.9

HOMD

Bacillus

subtilis

TU-B-10 (W23 group)

PROKKA

NCBI

HOMD

HMT-682

Neisseria

mucosa

ATCC 25996

SEQF1175

2,578,748

51.1

HOMD

Campylobacter

concisus

strain 13826

SEQF1177

2,099,413

39.3

HOMD

Campylobacter

curvus

525.92

SEQF1178

1,971,270

44.5

HOMD

Chlamydophila

pneumoniae

AR39

SEQF1179

1,234,385

40.6

HOMD

Chlamydophila

pneumoniae

CWL029

SEQF1180

1,230,230

40.6

HOMD

Chlamydophila

pneumoniae

J138

SEQF1181

1,226,565

40.6

HOMD

Chlamydophila

pneumoniae

TW-183

SEQF1182

1,225,935

40.6

HOMD

Neisseria

polysaccharea

ATCC 43768

SEQF1183

139

2,030,958

52.0

HOMD

Corynebacterium

diphtheriae

NCTC 13129

SEQF1184

2,488,635

53.5

HOMD

Cronobacter

sakazakii

ATCC BAA-894

SEQF1185

4,530,777

56.7

HOMD

Escherichia

coli

101-1

SEQF1186

4,979,767

50.6

HOMD

Arcanobacterium

haemolyticum

DSM 20595, CCM, ATCC 9345

SEQF1187

1,986,154

53.1

HOMD

Escherichia

coli

53638

SEQF1188

5,371,790

51.0

HOMD

Escherichia

coli

55989

SEQF1189

5,154,862

50.7

HOMD

Escherichia

coli

789 AC/1

4,800,000

PROKKA

NCBI

HOMD

Escherichia

coli

B str. REL606

SEQF1191

4,629,812

50.8

HOMD

Escherichia

coli

B171 (O111:NM)

SEQF1192

265

5,654,428

50.5

HOMD

Escherichia

coli

B7A (O148:H28:CS6:LT+:ST+)

SEQF1193

289

5,300,242

50.7

HOMD

Escherichia

coli

CFT073

SEQF1194

5,231,428

50.5

HOMD

Neisseria

flavescens

NRL30031/H210

SEQF1195

117

2,205,588

49.2

HOMD

Escherichia

coli

E110019 (O111:H9)

SEQF1196

137

5,376,211

50.7

HOMD

Escherichia

coli

E22

SEQF1197

127

5,528,238

50.6

HOMD

Escherichia

coli

E24377A

SEQF1198

5,249,288

50.6

HOMD

Escherichia

coli

042

SEQF1199

5,355,323

50.5

HOMD

Escherichia

coli

ED1a (O81)

SEQF1200

5,209,548

50.7

HOMD

Escherichia

coli

EPEC-E2348/69

PROKKA

NCBI

HOMD

Escherichia

coli

ETEC-H10407

122,000

PROKKA

NCBI

HOMD

Escherichia

coli

F11

SEQF1203

119

5,215,961

50.5

HOMD

Escherichia

coli

122,000

PROKKA

NCBI

HOMD

Escherichia

coli

SEQF1205

4,643,538

50.8

HOMD

Escherichia

coli

IAI1 (O8)

SEQF1206

4,700,560

50.8

HOMD

Escherichia

coli

IAI39 (O7:K1)

SEQF1207

5,132,068

50.6

HOMD

Escherichia

coli

str. K-12 substr. MG1655

SEQF1208

4,641,652

50.8

HOMD

Escherichia

coli

Nissle 1917

122,000

PROKKA

NCBI

HOMD

Escherichia

coli

non-K1 invasive clinical isolate

122,000

PROKKA

NCBI

HOMD

Escherichia

coli

O103:H2

122,000

PROKKA

NCBI

HOMD

Escherichia

coli

0111:H-

122,000

PROKKA

NCBI

HOMD

Escherichia

coli

O157:H7 EDL933

SEQF1213

5,620,522

50.5

HOMD

Escherichia

coli

O157:H7 str Sakai (EHEC)

5,594,477

PROKKA

HOMD

Escherichia

coli

O18ac:H7:K1 RS218 (NMEC)

SEQF1215

40,207

46.9

PROKKA

HOMD

Escherichia

coli

O26:H11

122,000

PROKKA

NCBI

HOMD

Escherichia

coli

S88 (O45:K1)

SEQF1217

5,166,121

50.7

HOMD

Escherichia

coli

UMN026 (O17:K52:H18)

SEQF1218

5,358,200

50.7

HOMD

Escherichia

coli

UTI89

SEQF1219

5,179,971

50.6

HOMD

Escherichia

coli

K12 W3110

SEQF1220

4,646,332

50.8

HOMD

Aggregatibacter

aphrophilus

NJ8700

SEQF1221

2,313,035

42.2

HOMD

Haemophilus

influenzae

str.10810 (serotype B)

2,100,000

PROKKA

NCBI

HOMD

Haemophilus

influenzae

22.1-21

SEQF1223

1,888,582

38.0

HOMD

Haemophilus

influenzae

22.4-21

SEQF1224

1,851,097

38.0

HOMD

Haemophilus

influenzae

3224A

122,000

PROKKA

NCBI

HOMD

Haemophilus

influenzae

3655

SEQF1226

1,878,368

38.0

HOMD

Haemophilus

influenzae

86-028NP

SEQF1227

1,914,490

38.2

HOMD

Haemophilus

influenzae

PittAA

SEQF1228

1,876,892

38.1

HOMD

Haemophilus

influenzae

PittBB

PROKKA

NCBI

HOMD

Haemophilus

influenzae

PittDD

1,760,000

PROKKA

NCBI

HOMD

Haemophilus

influenzae

PittEE

SEQF1231

1,813,033

38.0

HOMD

Haemophilus

influenzae

PittGG

SEQF1232

1,887,192

38.0

HOMD

Haemophilus

influenzae

PittHH

SEQF1233

1,837,347

38.0

HOMD

Haemophilus

influenzae

PittII

SEQF1234

1,954,291

38.0

HOMD

Haemophilus

influenzae

R2846

SEQF1235

1,819,370

38.0

HOMD

Haemophilus

influenzae

R2866

SEQF1236

1,932,306

38.1

HOMD

Haemophilus

influenzae

R3021

SEQF1237

1,875,614

38.0

HOMD

Haemophilus

influenzae

10810

SEQF1238

1,981,535

38.1

HOMD

Haemophilus

parainfluenzae

T3T1

SEQF1239

2,086,875

39.6

HOMD

Helicobacter

pylori

26695

SEQF1240

1,667,867

38.9

HOMD

Helicobacter

pylori

duodenal ulcer

122,000

PROKKA

NCBI

HOMD

Helicobacter

pylori

gastric cancer1

122,000

PROKKA

NCBI

HOMD

HMT-812

Helicobacter

pylori

SEQF1243

1,568,826

38.9

HOMD

Helicobacter

pylori

HPAG1

SEQF1244

1,605,736

39.1

HOMD

Helicobacter

pylori

J99

SEQF1245

1,643,831

39.2

HOMD

Lactobacillus

casei

BL23

SEQF1246

3,079,196

46.3

HOMD

Escherichia

coli

O157:H7 str. TW14359

SEQF1247

5,622,737

50.5

HOMD

Klebsiella

pneumoniae

122,000

PROKKA

NCBI

HOMD

HMT-731

Klebsiella

pneumoniae

342

SEQF1249

5,920,257

56.9

HOMD

Klebsiella

pneumoniae

MGH 78578, ATCC 700721

SEQF1250

5,694,894

57.2

HOMD

Lactobacillus

gasseri

MV-22

SEQF1251

1,929,035

35.0

PROKKA

HOMD

Lactobacillus

brevis

ATCC 367

SEQF1252

2,340,228

46.1

HOMD

Haemophilus

influenzae

PittFF

PROKKA

NCBI

HOMD

HMT-716

Lactobacillus

paracasei

ATCC 334

SEQF1254

2,924,325

46.6

HOMD

Lactobacillus

gasseri

ATCC 33323

SEQF1255

1,894,360

35.3

HOMD

Escherichia

coli

str. K12 substr. MG1655

4,639,675

PROKKA

HOMD

Lactobacillus

rhamnosus

HN001

SEQF1257

2,914,408

46.7

HOMD

Haemophilus

influenzae

PittJJ

PROKKA

NCBI

HOMD

HMT-756

Lactobacillus

salivarius

UCC118

SEQF1259

2,133,977

33.0

HOMD

Enterococcus

faecalis

TX0104

SEQF1260

3,156,478

38.3

HOMD

Neisseria

lactamica

ATCC 23970

SEQF1261

101

2,171,992

52.2

HOMD

Lactobacillus

paracasei

8700:2

SEQF1262

3,025,352

46.3

HOMD

Mycoplasma

fermentans

M64

SEQF1263

1,118,751

26.9

HOMD

Neisseria

sicca

ATCC 29256

SEQF1264

2,830,772

50.9

HOMD

Mycoplasma

fermentans

PG18

SEQF1265

1,004,014

27.0

HOMD

Mycoplasma

genitalium

G37, ATCC 33530

SEQF1267

580,076

31.7

HOMD

Mycoplasma

genitalium

G-37 ATCC 33530

SEQF1268

560,035

31.4

PROKKA

HOMD

Mycoplasma

hominis

PG21

700,000

PROKKA

NCBI

HOMD

Mycoplasma

orale

675,000

PROKKA

NCBI

HOMD

HMT-732

Mycoplasma

pneumoniae

M129, ATCC29342

SEQF1271

816,394

40.0

HOMD

Neisseria

gonorrhoeae

FA 1090, ATCC 700825

SEQF1272

2,153,922

52.7

HOMD

Neisseria

lactamica

ST-640

2,300,000

PROKKA

NCBI

HOMD

Neisseria

meningitidis

122,000

PROKKA

NCBI

HOMD

HMT-669

Neisseria

meningitidis

serogroup C, FAM18

SEQF1275

2,194,961

51.6

HOMD

Neisseria

meningitidis

MC58

SEQF1276

2,272,360

51.5

HOMD

Neisseria

meningitidis

8013 (serogroup C)

SEQF1277

2,277,550

51.4

HOMD

Neisseria

meningitidis

ST-136

PROKKA

NCBI

HOMD

Neisseria

meningitidis

ST-22

PROKKA

NCBI

HOMD

Neisseria

meningitidis

ST-53 a-14

2,146,000

PROKKA

NCBI

HOMD

Neisseria

meningitidis

ST-60

PROKKA

NCBI

HOMD

HMT-669

Neisseria

meningitidis

serogroup A, Z2491

SEQF1283

2,184,406

51.8

HOMD

Ochrobactrum

anthropi

SEQF1284

143

99,498

55.2

NCBI

HOMD

Propionibacterium

acnes

2,800,000

PROKKA

NCBI

HOMD

HMT-530

Cutibacterium

acnes

KPA171202, DSM 16379

SEQF1286

2,560,265

60.0

HOMD

Leptotrichia

buccalis

C-1013-b, DSM 1135, ATCC 14201, JCM 1296

SEQF1287

2,465,610

29.7

HOMD

Proteus

mirabilis

122,000

PROKKA

NCBI

HOMD

HMT-676

Proteus

mirabilis

HI4320

SEQF1289

4,099,895

38.9

HOMD

Pseudomonas

aeruginosa

2192

SEQF1290

6,826,253

66.2

PROKKA

HOMD

Pseudomonas

aeruginosa

C3719

SEQF1291

124

6,146,998

66.5

PROKKA

HOMD

Pseudomonas

aeruginosa

clinical isolates pacs416 (early)

122,000

PROKKA

NCBI

HOMD

Pseudomonas

aeruginosa

clinical isolates pacs5296(lat

PROKKA

NCBI

HOMD

Pseudomonas

aeruginosa

LES

6,300,000

PROKKA

NCBI

HOMD

HMT-536

Pseudomonas

aeruginosa

PA7

SEQF1295

6,588,339

66.5

HOMD

Pseudomonas

aeruginosa

PACS2

SEQF1296

6,492,423

66.3

PROKKA

HOMD

Pseudomonas

aeruginosa

PAO1

SEQF1297

6,264,404

66.6

HOMD

Pseudomonas

aeruginosa

UCBPP-PA14

SEQF1298

6,537,648

66.3

HOMD

Pseudomonas

fluorescens

Pf-5

SEQF1300

7,074,893

63.3

HOMD

Pseudomonas

fluorescens

Pf0-1

SEQF1301

6,438,405

60.5

HOMD

Pseudomonas

fluorescens

SBW25

SEQF1302

6,722,539

60.5

HOMD

Pseudomonas

stutzeri

A1501, CGMCC 0351

SEQF1303

4,567,418

63.9

HOMD

Staphylococcus

aureus

122,000

PROKKA

NCBI

HOMD

Staphylococcus

aureus

930131

2,564,000

PROKKA

NCBI

HOMD

Staphylococcus

aureus

ATCC 29213

2,621,000

PROKKA

NCBI

HOMD

Staphylococcus

aureus

JH1 VISA

2,936,936

PROKKA

HOMD

Staphylococcus

aureus

RF122

SEQF1310

2,742,531

32.8

HOMD

Staphylococcus

aureus

COL

SEQF1311

2,813,862

32.8

HOMD

Staphylococcus

aureus

JH1

SEQF1312

2,936,936

32.9

HOMD

Staphylococcus

aureus

JH9

SEQF1313

2,937,129

32.9

HOMD

Staphylococcus

aureus

MRSA252

SEQF1314

2,902,619

32.8

HOMD

Staphylococcus

aureus

MSSA476

SEQF1315

2,820,454

32.8

HOMD

Staphylococcus

aureus

Mu50, (VRSA), ATCC 700699

SEQF1316

2,903,636

32.8

HOMD

Staphylococcus

aureus

MW2

SEQF1317

2,820,462

32.8

HOMD

Staphylococcus

aureus

N315

SEQF1318

2,839,469

32.8

HOMD

Staphylococcus

aureus

NCTC 8325

SEQF1319

2,821,361

32.9

HOMD

Staphylococcus

aureus

MRSA, USA300, FPR3757

SEQF1320

2,917,469

32.7

HOMD

Staphylococcus

epidermidis

122,000

PROKKA

NCBI

HOMD

HMT-601

Staphylococcus

epidermidis

ATCC 12228

SEQF1322

2,564,615

32.1

HOMD

Staphylococcus

epidermidis

ATCC 14990

2,377,000

PROKKA

NCBI

HOMD

HMT-601

Staphylococcus

epidermidis

RP62A, ATCC 35984

SEQF1324

2,643,840

32.2

HOMD

Treponema

pallidum

subsp. pertenue Gauthier

SEQF1326

1,139,417

52.8

HOMD

Streptococcus

pneumoniae

2,057,000

PROKKA

NCBI

HOMD

HMT-805

Treponema

pallidum

subsp. pertenue str. CDC2

SEQF1328

1,139,744

52.8

HOMD

Stenotrophomonas

maltophilia

K279a

SEQF1329

4,851,126

66.3

HOMD

Stenotrophomonas

maltophilia

R551-3

SEQF1330

4,573,969

66.3

HOMD

Streptococcus

agalactiae

18RS21

SEQF1331

553

2,193,092

37.0

HOMD

Streptococcus

agalactiae

2603V/R

SEQF1332

2,160,267

35.7

HOMD

Streptococcus

agalactiae

515

SEQF1333

255

2,088,229

35.3

HOMD

Streptococcus

agalactiae

A909

SEQF1334

2,127,839

35.6

HOMD

Streptococcus

agalactiae

CJB111

SEQF1335

155

2,105,032

35.6

HOMD

Streptococcus

agalactiae

COH1

SEQF1336

393

2,205,442

35.5

HOMD

Streptococcus

agalactiae

H36B

SEQF1337

345

2,201,150

35.6

HOMD

Streptococcus

agalactiae

NEM316

SEQF1338

2,211,485

35.6

HOMD

Streptococcus

pneumoniae

122,000

PROKKA

NCBI

HOMD

Streptococcus

pneumoniae

23F (Spanish 23F-1)

2,200,000

PROKKA

NCBI

HOMD

Streptococcus

pneumoniae

670-6B

SEQF1341

2,240,045

39.6

HOMD

Streptococcus

pneumoniae

D39

SEQF1342

2,046,116

39.7

HOMD

Streptococcus

pneumoniae

INV104

SEQF1343

2,142,122

39.6

HOMD

Streptococcus

pneumoniae

INV200

SEQF1344

2,093,317

39.6

HOMD

Streptococcus

pneumoniae

OXC141

SEQF1345

2,036,867

39.8

HOMD

Streptococcus

pneumoniae

SEQF1346

2,038,615

39.7

HOMD

Streptococcus

pneumoniae

serotype 6

122,000

PROKKA

NCBI

HOMD

Streptococcus

pneumoniae

TIGR4

SEQF1348

218

2,016,795

39.6

PROKKA

HOMD

Streptococcus

pneumoniae

TIGR4

SEQF1349

2,160,842

39.7

HOMD

Treponema

pallidum

subsp. pertenue str. SamoaD

SEQF1350

1,139,330

52.8

HOMD

Helicobacter

pylori

98-10

SEQF1351

1,571,772

38.8

HOMD

Helicobacter

pylori

B128

SEQF1352

1,649,221

38.8

HOMD

Streptococcus

pyogenes

M49 591

SEQF1353

295

1,327,684

38.3

PROKKA

HOMD

Staphylococcus

aureus subsp. aureus

USA300

PROKKA

NCBI

HOMD

HMT-745

Streptococcus

pyogenes

Manfredo (M5) M5

SEQF1355

1,841,271

38.6

HOMD

Streptococcus

pyogenes

MGAS10270

SEQF1356

1,928,252

38.4

HOMD

Streptococcus

pyogenes

M6 MGAS10394, ATCC BAA-946

SEQF1357

1,899,877

38.7

HOMD

Streptococcus

pyogenes

MGAS10750, ATCC BAA-1066

SEQF1358

1,937,111

38.3

HOMD

Streptococcus

pyogenes

MGAS2096, ATCC BAA-1065

SEQF1359

1,860,355

38.7

HOMD

Streptococcus

pyogenes

MGAS315, ATCC BAA-595

SEQF1360

1,900,521

38.6

HOMD

Streptococcus

pyogenes

M1 MGAS5005, ATCC BAA-947

SEQF1361

1,838,562

38.5

HOMD

Streptococcus

pyogenes

M28 MGAS6180, ATCC BAA-1064

SEQF1362

1,897,573

38.4

HOMD

Streptococcus

pyogenes

MGAS8232, ATCC BAA-572

SEQF1363

1,895,017

38.6

HOMD

Streptococcus

pyogenes

MGAS9429, ATCC BAA-1315

SEQF1364

1,836,467

38.5

HOMD

Streptococcus

pyogenes

SSI-1

SEQF1365

1,894,275

38.6

HOMD

Streptococcus

salivarius

JIM8777

SEQF1366

2,210,574

40.1

HOMD

Streptococcus

salivarius

CCHSS3, JIM8780

SEQF1367

2,217,184

39.9

HOMD

Lactobacillus

crispatus

JV-V01

SEQF1368

2,221,719

41.3

HOMD

Lactobacillus

reuteri clade 818

SD2112

SEQF1369

2,316,838

39.0

HOMD

Mycobacterium

tuberculosis

GM 1503

SEQF1370

295

4,261,330

65.4

PROKKA

HOMD

Mycobacterium

tuberculosis

T17

SEQF1371

443

4,277,414

65.4

PROKKA

HOMD

Tannerella

forsythia

PROKKA

NCBI

HOMD

Escherichia

coli

0157:H7 VT2 Sakai

5,498,000

PROKKA

NCBI

HOMD

Escherichia

coli

SE11

SEQF1376

5,155,626

50.7

HOMD

Staphylococcus

aureus

Michigan VRSA plasmids

57,000

PROKKA

NCBI

HOMD

Staphylococcus

aureus

MN8

2,840,000

PROKKA

NCBI

HOMD

Streptococcus

pneumoniae

G54

2,074,000

PROKKA

NCBI

HOMD

HMT-745

Streptococcus

pyogenes

SF370 (serotype M1 GAS), ATCC 700294

SEQF1380

1,852,433

38.5

HOMD

Streptococcus

mutans

NN2025

SEQF1382

2,013,587

36.9

HOMD

Acinetobacter

baumannii

ATCC 17978

SEQF1384

4,001,457

38.9

HOMD

Bifidobacterium

dentium

Bd1

SEQF1385

2,636,367

58.5

HOMD

Schaalia

odontolyticus

ATCC 17982, DSM 43331

SEQF1388

2,393,958

65.5

HOMD

Peptostreptococcus

stomatis

DSM 17678, W2278

SEQF1393

1,988,044

36.7

HOMD

Variovorax

paradoxus

S110

SEQF1395

6,754,997

67.5

HOMD

Acinetobacter

baumannii

ACICU

SEQF1398

3,996,761

38.9

HOMD

Chlamydophila

pneumoniae

LPCoLN

SEQF1399

1,248,550

40.5

HOMD

Streptococcus

pneumoniae

SP11-BS70

SEQF1400

2,059,769

39.7

HOMD

Streptococcus

pneumoniae

SP14-BS69

SEQF1401

2,146,293

39.6

HOMD

Streptococcus

pneumoniae

SP18-BS74

SEQF1402

2,104,549

39.7

HOMD

Streptococcus

pneumoniae

SP19-BS75

SEQF1403

2,135,318

39.6

HOMD

Streptococcus

pneumoniae

SP23-BS72

SEQF1404

2,102,291

39.7

HOMD

Streptococcus

pneumoniae

SP3-BS71

SEQF1405

2,032,681

39.8

HOMD

Streptococcus

pneumoniae

SP6-BS73

SEQF1406

2,161,512

39.6

HOMD

Streptococcus

pneumoniae

SP9-BS68

SEQF1407

2,115,676

39.6

HOMD

Escherichia

coli

0157:H7 str. Sakai

SEQF1408

5,594,605

50.5

HOMD

Delftia

acidovorans

SPH-1, ATCC15668

SEQF1413

6,767,514

66.5

HOMD

Escherichia

coli

UPEC-536

4,938,920

PROKKA

HOMD

Treponema

pallidum

Dallas1

SEQF1419

1,139,971

52.8

HOMD

Pseudomonas

aeruginosa

PKS6

PROKKA

NCBI

HOMD

Haemophilus

influenzae

PittCC

PROKKA

NCBI

HOMD

Escherichia

coli

O157:H7 str. GZ-021210/cattle

PROKKA

NCBI

HOMD

Escherichia

coli

C str. ATCC 8739

SEQF1429

4,746,218

50.9

HOMD

Escherichia

coli

APEC O1

SEQF1430

5,497,653

50.3

HOMD

Staphylococcus

aureus

str. Newman

SEQF1431

2,878,897

32.9

HOMD

Escherichia

coli

536

SEQF1433

4,938,920

50.5

HOMD

Peptoniphilus

asaccharolyticus

UW 228, DSM 20463, ATCC 14963, NCIB 10074, NCTC 11

PROKKA

NCBI

HOMD

Finegoldia

magna

ATCC 29328

SEQF1447.1

100

62,905

PROKKA

NCBI

HOMD

HMT-604

Enterococcus

faecalis

HH22

SEQF1449

103

3,129,930

38.8

HOMD

Bacteroidales [G-2]

bacterium HMT 274

F0058

SEQF1451

2,113,539

43.3

HOMD

Prevotella

nanceiensis

F0039

SEQF1452

2,480,269

37.5

HOMD

Listeria

monocytogenes

10403S

SEQF1456

2,903,106

38.0

HOMD

Ochrobactrum

anthropi

ATCC 49188

SEQF1457

5,205,777

56.1

HOMD

Escherichia

coli

RS218

PROKKA

NCBI

HOMD

Listeria

monocytogenes

F6900

SEQF1459

2,968,620

37.8

HOMD

Pseudomonas

aeruginosa

PK6

PROKKA

NCBI

HOMD

Staphylococcus

aureus

0582

3,000,000

PROKKA

NCBI

HOMD

Staphylococcus

aureus

EMRSA15

2,800,000

PROKKA

NCBI

HOMD

Listeria

monocytogenes

FSL F2-515

SEQF1463

1,728

1,815,995

37.4

PROKKA

HOMD

Staphylococcus

aureus

MSSA

PROKKA

NCBI

HOMD

Listeria

monocytogenes

FSL J1-175

SEQF1466

457

2,866,484

37.9

PROKKA

HOMD

Candidate division TM7 single-cell isolate

TM7a

SEQF1467

1,780

1,691,166

34.3

PROKKA

NCBI

HOMD

HMT-348

Saccharibacteria (TM7) [G-1]

bacterium HMT 348

TM7b

SEQF1468

112,753

37.0

HOMD

Saccharibacteria (TM7) [G-1]

bacterium HMT 348

TM7c

SEQF1469

129

474,179

39.1

HOMD

Aggregatibacter

actinomycetemcomitans

unknown strain A

509,000

PROKKA

NCBI

HOMD

Aggregatibacter

actinomycetemcomitans

unknown strain B

868,000

PROKKA

NCBI

HOMD

HMT-386

Peptoniphilus

sp. HMT 386

F0131

SEQF1472

1,569,385

31.8

HOMD

Aggregatibacter

actinomycetemcomitans

unknown strain C

2,078,000

PROKKA

NCBI

HOMD

HMT-357

Pyramidobacter

piscolens

W5455 (TFI)

SEQF1474

385

276,552

59.5

NCBI

HOMD

HMT-357

Pyramidobacter

piscolens

W5455 (JCVI)

SEQF1475

467

338,862

62.0

NCBI

HOMD

HMT-777

Jonquetella

anthropi

E3_33 E1

SEQF1476

509

618,283

58.5

NCBI

HOMD

HMT-317

Prevotella

sp. HMT 317

F0108

SEQF1477

4,099,098

48.4

HOMD

Lachnoanaerobaculum

umeaense

F0167

SEQF1478

3,288,100

35.9

HOMD

Listeria

monocytogenes

FSL J1-194

SEQF1479

2,989,818

37.8

HOMD

Cryptobacterium

curtum

DSM 15641, ATCC 700683, 12-3T

SEQF1480

1,617,804

50.9

HOMD

Enterobacter

cancerogenus

ATCC 35316

SEQF1481

4,638,653

55.9

HOMD

Lactococcus

lactis

IL1403

SEQF1482

2,365,589

35.3

HOMD

Pseudomonas

aeruginosa

OPPA8

PROKKA

NCBI

HOMD

Pseudomonas

pseudoalcaligenes

MTCC 5210

PROKKA

NCBI

HOMD

HMT-554

Acinetobacter

baumannii

AB0057

SEQF1485

4,063,879

39.2

HOMD

Acinetobacter

baumannii

MDR-ZJ06

SEQF1486

4,022,275

39.1

HOMD

Haemophilus

influenzae

HK1212

SEQF1487

1,262

859,497

39.9

HOMD

Staphylococcus

aureus

930918-3

SEQF1488

736

2,923,460

32.7

HOMD

Staphylococcus

aureus

D30

SEQF1489

463

2,775,621

32.7

HOMD

Staphylococcus

aureus

Mu3

SEQF1490

2,880,168

32.9

HOMD

Staphylococcus

aureus

USA300_TCH959

SEQF1491

174

2,845,480

33.3

HOMD

Staphylococcus

aureus

MRSA USA300_TCH1516

SEQF1492

2,903,081

32.7

HOMD

Lactobacillus

casei

str. Zhang

SEQF1493

2,898,456

46.4

HOMD

Streptococcus

pyogenes

NZ131

SEQF1494

1,815,785

38.6

HOMD

Enterococcus

faecalis

OG1RF, ATCC 47077

SEQF1495

2,739,625

37.8

HOMD

Veillonella

parvula

DSM 2008, Te3, ATCC 10790, JCM 1297

SEQF1496

2,132,142

38.6

HOMD

Bifidobacterium

dentium

ATCC 27678

SEQF1497

2,642,081

58.5

HOMD

Eggerthella

lenta

DSM 2243, VPI 0255

SEQF1498

3,632,260

64.2

HOMD

Treponema

pallidum

SS14

SEQF1499

1,139,457

52.8

HOMD

Lactococcus

lactis

MG1363

SEQF1500

2,529,478

35.8

HOMD

Lactococcus

lactis

SK11

SEQF1501

2,598,348

35.8

HOMD

Selenomonas

sputigena

DSM 20758

PROKKA

NCBI

HOMD

Escherichia

coli

BL21(DE3)

SEQF1503

4,558,953

50.8

HOMD

Escherichia

coli

str. K-12 substr. DH10B

SEQF1504

4,686,137

50.8

HOMD

Escherichia

coli

F18+

PROKKA

NCBI

HOMD

Escherichia

coli

O157:H7 str. EC4024

SEQF1506

364

6,199,307

50.7

PROKKA

HOMD

Escherichia

coli

O157:H7 str. EC4042

SEQF1507

5,617,728

50.5

HOMD

Escherichia

coli

O157:H7 str. EC4045

SEQF1508

5,634,850

50.5

HOMD

Escherichia

coli

O157:H7 str. EC4076

SEQF1509

135

5,705,645

50.6

HOMD

Escherichia

coli

O157:H7 str. EC4113

SEQF1510

231

5,655,847

50.6

HOMD

Escherichia

coli

O157:H7 str. EC4115

SEQF1511

5,704,171

50.4

HOMD

Escherichia

coli

O157:H7 str. EC4196

SEQF1512

186

5,620,606

50.6

HOMD

Escherichia

coli

O157:H7 str. EC4206

SEQF1513

5,629,932

50.5

HOMD

Escherichia

coli

O157:H7 str. EC4401

SEQF1514

186

5,733,133

50.5

HOMD

Escherichia

coli

O157:H7 str. EC4486

SEQF1515

165

5,933,166

50.4

HOMD

Escherichia

coli

O157:H7 str. EC4501

SEQF1516

250

5,677,181

50.6

HOMD

Escherichia

coli

O157:H7 str. EC508

SEQF1517

272

5,656,666

50.7

HOMD

Escherichia

coli

O157:H7 str. EC869

SEQF1518

147

5,731,065

50.5

HOMD

Escherichia

coli

SECEC SMS-3-5

SEQF1519

5,215,377

50.5

HOMD

Escherichia

coli

c7122

5,500,000

PROKKA

NCBI

HOMD

Streptococcus

pneumoniae

459-2

PROKKA

NCBI

HOMD

Streptococcus

pneumoniae

459-5

PROKKA

NCBI

HOMD

Streptococcus

pneumoniae

70585

SEQF1523

2,184,682

39.7

HOMD

Streptococcus

pneumoniae

CDC0288-04

SEQF1524

2,049,808

39.9

HOMD

Streptococcus

pneumoniae

CDC1087-00

SEQF1525

2,187,960

39.8

HOMD

Streptococcus

pneumoniae

CDC1873-00

SEQF1526

2,263,323

39.6

HOMD

Streptococcus

pneumoniae

CDC3059-06

SEQF1527

2,292,125

39.9

HOMD

Streptococcus

pneumoniae

Hungary19A-6

SEQF1528

2,245,615

39.6

HOMD

Streptococcus

pneumoniae

JJA

SEQF1529

2,120,234

39.7

HOMD

Streptococcus

pneumoniae

MLV-016

SEQF1530

126

2,242,383

39.9

HOMD

Streptococcus

pneumoniae

SP195

SEQF1531

2,196,854

39.7

HOMD

Streptococcus

pneumoniae

Taiwan19F-14

SEQF1532

2,112,148

39.8

HOMD

Lactobacillus

fermentum

IFO 3956

SEQF1533

2,098,685

51.5

HOMD

Listeria

monocytogenes

FSL J1-208

SEQF1534

1,660

1,963,740

37.7

PROKKA

HOMD

Lactobacillus

rhamnosus

ATCC 53103

2,300,000

PROKKA

NCBI

HOMD

Streptococcus

pneumoniae

BS397

SEQF1536

2,070,802

39.7

HOMD

Streptococcus

mutans

2,400,000

PROKKA

NCBI

HOMD

HMT-619

Porphyromonas

gingivalis

ATCC 33277

SEQF1538

2,354,886

48.4

HOMD

Listeria

monocytogenes

FSL J2-003

SEQF1539

795

2,741,640

37.8

PROKKA

HOMD

Dialister

pneumosintes

DSM 11619 ATCC 33048

1,300,000

PROKKA

NCBI

HOMD

HMT-357

Pyramidobacter

piscolens

W5455 (TFI-JCVI)

SEQF1541

852

615,414

60.9

NCBI

HOMD

Listeria

monocytogenes

FSL J2-064

SEQF1542

545

2,828,700

37.9

PROKKA

HOMD

Listeria

monocytogenes

FSL J2-071

SEQF1543

2,853,713

38.1

HOMD

Listeria

monocytogenes

FSL N1-017

SEQF1544

3,142,060

37.8

HOMD

Listeria

monocytogenes

FSL N3-165

SEQF1545

2,884,080

37.8

HOMD

Listeria

monocytogenes

FSL R2-503

SEQF1546

2,991,493

37.8

HOMD

Listeria

monocytogenes

FSL R2-561

SEQF1547

2,973,801

38.0

HOMD

Listeria

monocytogenes

Finland 1988

SEQF1548

2,874,431

38.1

HOMD

Listeria

monocytogenes

HPB2262

SEQF1549

2,991,120

37.8

HOMD

Listeria

monocytogenes

Italy

2,000,000

PROKKA

NCBI

HOMD

Listeria

monocytogenes

J0161

SEQF1551

3,000,464

37.9

HOMD

Listeria

monocytogenes

J2818

SEQF1552

2,973,040

37.8

HOMD

Listeria

monocytogenes

LO28

SEQF1553

1,150

2,675,580

37.8

PROKKA

HOMD

Listeria

monocytogenes

XFL0605

3,000,000

PROKKA

NCBI

HOMD

HMT-827

Yersinia

pestis

Angola

SEQF1555

4,687,014

47.6

HOMD

Yersinia

pestis

CA88-4125

SEQF1556

4,825,390

47.6

HOMD

Yersinia

pestis

FV-1

SEQF1557

400

4,472,646

47.6

PROKKA

HOMD

Yersinia

pestis

Nepal516

SEQF1558

4,629,080

47.6

HOMD

Yersinia

pestis

Pestoides A

SEQF1559

4,750,606

47.6

HOMD

Yersinia

pestis

biovar Antiqua str. B42003004

SEQF1560

4,841,690

47.7

HOMD

Yersinia

pestis

biovar Antiqua str. E1979001

SEQF1561

4,847,813

47.7

HOMD

Yersinia

pestis

biovar Antiqua str. UG05-0454

SEQF1562

4,838,246

47.7

HOMD

Yersinia

pestis

biovar Mediaevalis str. K1973002

SEQF1563

4,720,694

47.6

HOMD

Yersinia

pestis

biovar Medievalis str. Harbin 35

SEQF1564

4,709,501

47.6

HOMD

Yersinia

pestis

biovar Orientalis str. F1991016

SEQF1565

107

4,892,085

47.7

HOMD

Yersinia

pestis

biovar Orientalis str. India 195

SEQF1566

4,719,608

47.6

HOMD

Yersinia

pestis

biovar Orientalis str. IP275

SEQF1567

102

5,322,065

48.1

HOMD

Yersinia

pestis

biovar Orientalis str. MG05-1020

SEQF1568

4,977,609

47.6

HOMD

Yersinia

pestis

biovar Orientalis str. PEXU2

SEQF1569

4,770,886

47.7

HOMD

Escherichia

coli

BL21(DE3)

SEQF1572

4,570,938

50.8

HOMD

Listeria

monocytogenes

HCC23

SEQF1574

2,976,212

38.2

HOMD

Campylobacter

rectus

RM3267

SEQF1575

2,513,107

44.9

HOMD

Capnocytophaga

sputigena

ATCC 33612

SEQF1576

2,997,845

38.4

HOMD

Gardnerella

vaginalis

409-05

SEQF1577

1,617,545

42.0

HOMD

Fusobacterium

nucleatum subsp. nucleatum

ATCC 23726

2,400,000

PROKKA

NCBI

HOMD