GENOME_ID HMT_ID strain hmt_naming_status hmt_cultivation_status hmt_primary_body_site_w_abundance organism contigs combined_size MAG GC url GTDB_taxonomy bioproject taxid biosample assembly_name assembly_level assembly_method submission_date geo_loc_name isolation_source seqtech submitter coverage ANI checkM_completeness checkM_contamination checkM2_completeness checkM2_contamination refseq_assembly WGS prokka_CDS prokka_gene prokka_mRNA prokka_misc_RNA prokka_rRNA prokka_tRNA prokka_tmRNA pangenome GCA_000006605.1 HMT-047 K411 = NCTC 11915 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium K411 = NCTC 11915 2 2476822 61.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/006/605/GCA_000006605.1_ASM660v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium PRJNA13967 306537 SAMEA3283089 ASM660v1 Complete Genome 2015-03-06T08:10:24.140 Bielefeld Univ 96.73 100 0.68 99.95 0.31 GCF_000006605.1 2129 2198 2198 8 9 51 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_000006625.1 HMT-799 ATCC 700970 Named Cultivated Vaginal (Abundance: Medium) HMT-799 Ureaplasma parvum ATCC 700970 1 751719 25.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/006/625/GCA_000006625.1_ASM662v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum PRJNA101 273119 SAMN02604098 ASM662v1 Complete Genome 2014-01-30T14:54:21.703 Univ.AL-Birmingham 99.99 99.05 0 97.77 0.06 GCF_000006625.1 1260 1301 1301 4 6 30 1 Ureaplasma_parvum_homd_HMT_799 GCA_000006885.1 HMT-734 TIGR4; ATCC BAA-334 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TIGR4; ATCC BAA-334 1 2160842 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/006/885/GCA_000006885.1_ASM688v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA277 170187 SAMN02604002 ASM688v1 Complete Genome 2014-01-30T14:54:14.657 TIGR 98.72 99.42 0.2 100 0.15 GCF_000006885.1 2123 2282 2282 87 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000007045.1 HMT-734 R6 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae R6 1 2038615 39.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/007/045/GCA_000007045.1_ASM704v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA278 171101 SAMN02603218 ASM704v1 Complete Genome 2014-01-30T11:19:42.150 Eli Lilly and Company 98.76 99.56 0.21 100 0.08 GCF_000007045.1 1992 2142 2142 79 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000007205.1 HMT-733 TW-183 Named Cultivated Pathogen (Abundance: Scarce) HMT-733 Chlamydia pneumoniae TW-183 1 1225935 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/007/205/GCA_000007205.1_ASM720v1 d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila;s__Chlamydophila pneumoniae PRJNA420 182082 SAMN02602979 ASM720v1 Complete Genome 2014-01-30T11:19:22.026 ALTANA Pharma 99.49 0 99.02 0.1 GCF_000007205.1 1050 1095 1095 3 3 38 1 Chlamydia_pneumoniae_homd_HMT_733 GCA_000007325.1 HMT-698 ATCC 25586 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto ATCC 25586 1 2174500 27.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/007/325/GCA_000007325.1_ASM732v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA295 190304 SAMN02603417 ASM732v1 Complete Genome 2014-01-30T14:21:28.203 Integrated Genomics 99.99 99.95 0 100 0.09 GCF_000007325.1 2016 2097 2097 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_000007465.2 HMT-686 UA159 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UA159 1 2032925 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/007/465/GCA_000007465.2_ASM746v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA333 210007 SAMN02604090 ASM746v2 Complete Genome 2014-01-30T14:54:21.253 Univ. Oklahoma 99.34 100 0 100 0.06 GCF_000007465.2 1897 2010 2010 32 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_000007585.1 HMT-619 W83 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis W83 1 2343476 48.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/007/585/GCA_000007585.1_ASM758v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA48 242619 SAMN02603720 ASM758v1 Complete Genome 2014-01-30T14:21:48.453 Porphyromonas gingivalis Genome Project 98.57 99.92 0 99.99 0.04 GCF_000007585.1 1996 2080 2080 18 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000007645.1 HMT-601 ATCC 12228 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis ATCC 12228 7 2564615 32.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/007/645/GCA_000007645.1_ASM764v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA279 176280 SAMN02603126 ASM764v1 Complete Genome 2014-01-30T11:19:34.387 Chinese National HGC, Shanghai 99.61 99.81 0 99.99 0.07 GCF_000007645.1 2350 2509 2509 82 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_000008065.1 HMT-819 NCC 533 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-819 Lactobacillus johnsonii NCC 533 1 1992676 34.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/008/065/GCA_000008065.1_ASM806v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus sp910589675 PRJNA9638 257314 SAMN02603676 ASM806v1 Complete Genome 2014-01-30T14:21:46.260 Nestle Research Center, Switzerland 96.72 99.22 0 100 0.71 GCF_000008065.1 1875 2006 2006 34 18 78 1 Lactobacillus_johnsonii_homd_HMT_819 GCA_000008185.1 HMT-584 ATCC 35405 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola ATCC 35405 1 2843201 37.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/008/185/GCA_000008185.1_ASM818v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA4 243275 SAMN02603967 ASM818v1 Complete Genome 2014-01-30T14:54:10.460 TIGR 100 0 99.03 0.24 GCF_000008185.1 2575 2636 2636 10 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000008345.1 HMT-530 KPA171202 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes KPA171202 1 2560265 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/008/345/GCA_000008345.1_ASM834v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA12460 267747 SAMN02603281 ASM834v1 Complete Genome 2014-01-30T11:19:46.356 Goettingen Genomics Laboratory 99.16 100 0 100 0.12 GCF_000008345.1 2362 2443 2443 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_000008605.1 HMT-805 Nichols Named Cultivated Pathogen (Abundance: Scarce) HMT-805 Treponema pallidum Nichols 1 1138011 52.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/008/605/GCA_000008605.1_ASM860v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema pallidum PRJNA5 243276 SAMN02604348 ASM860v1 Complete Genome 2014-01-30T15:13:26.630 US DOE Joint Genome Institute (JGI-PGF) 99.97 100 0 98.66 0 GCF_000008605.1 1001 1055 1055 2 6 45 1 Treponema_pallidum_homd_HMT_805 GCA_000008745.1 HMT-733 CWL029 Named Cultivated Pathogen (Abundance: Scarce) HMT-733 Chlamydia pneumoniae CWL029 1 1230230 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/008/745/GCA_000008745.1_ASM874v1 d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila;s__Chlamydophila pneumoniae PRJNA248 115713 SAMN02603115 ASM874v1 Complete Genome 2014-01-30T11:19:33.256 ChGP 99.95 99.49 0 99.04 0.1 GCF_000008745.1 1058 1103 1103 3 3 38 1 Chlamydia_pneumoniae_homd_HMT_733 GCA_000008805.1 HMT-669 MC58 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis MC58 1 2272360 51.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/008/805/GCA_000008805.1_ASM880v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA251 122586 SAMN02603997 ASM880v1 Complete Genome 2014-01-30T14:54:14.340 TIGR 97.23 99.75 1.9 100 2.31 GCF_000008805.1 2096 2190 2190 21 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_000008925.1 HMT-756 UCC118 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-756 Ligilactobacillus salivarius UCC118 4 2133977 33.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/008/925/GCA_000008925.1_ASM892v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius PRJNA13280 362948 SAMN02604111 ASM892v1 Complete Genome 2014-01-30T14:54:22.493 University College Cork 97.95 99.48 0.52 99.96 0.39 GCF_000008925.1 2101 2242 2242 42 21 77 1 Ligilactobacillus_salivarius_homd_HMT_756 GCA_000009005.1 HMT-550 RF122 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus RF122 1 2742531 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/009/005/GCA_000009005.1_ASM900v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA63 273036 SAMEA3138186 ASM900v1 Complete Genome 2014-11-21T08:58:17.477 Ireland Univ. Minnesota 98.68 98.82 0.22 100 0.27 GCF_000009005.1 2594 2781 2781 109 16 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000009045.1 HMT-468 168 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-468 Bacillus subtilis 168 1 4215606 43.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/009/045/GCA_000009045.1_ASM904v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis PRJNA76 224308 SAMEA3138188 ASM904v1 Complete Genome 2014-11-21T08:58:17.647 BSNR 99.99 99.81 0.25 100 0.05 GCF_000009045.1 4214 4432 4432 100 30 87 1 Bacillus_subtilis_homd_HMT_468 GCA_000009105.1 HMT-669 Z2491 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis Z2491 1 2184406 51.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/009/105/GCA_000009105.1_ASM910v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA252 122587 SAMEA1705949 ASM910v1 Complete Genome 2010-11-05T17:16:38.473 Sanger Institute 99.16 99.51 0.21 99.96 0.01 GCF_000009105.1 2052 2157 2157 34 12 58 1 Neisseria_meningitidis_homd_HMT_669 GCA_000009585.1 HMT-550 type strain:ST398 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus type strain 4 2885367 32.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/009/585/GCA_000009585.1_ASM958v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJEA29427 523796 SAMEA2272644 ASM958v1 Complete Genome 2013-12-20T12:43:46.800 University Medical Centre Utrecht 97.75 99.51 0.08 100 0.19 GCF_000009585.1 2689 2884 2884 114 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000009625.1 HMT-659 MAFF 303099 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-659 Mesorhizobium japonicum MAFF 303099 3 7596297 62.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/009/625/GCA_000009625.1_ASM962v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium japonicum PRJNA18 266835 SAMD00061086 ASM962v1 Complete Genome 2016-09-28T01:02:38.973 Kazusa 99.92 2.05 100 0.72 GCF_000009625.1 7373 7435 0 0 6 55 1 Mesorhizobium_japonicum_homd_HMT_659 GCA_000009645.1 HMT-550 N315 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus N315 2 2839469 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/009/645/GCA_000009645.1_ASM964v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA264 158879 SAMD00061099 ASM964v1 Complete Genome 2016-09-28T01:02:48.647 Juntendo Univ. 98.97 99.51 0.08 100 0.42 GCF_000009645.1 2592 2795 2795 123 16 63 1 Staphylococcus_aureus_homd_HMT_550 GCA_000009665.1 HMT-550 Mu50 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus Mu50 2 2903636 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/009/665/GCA_000009665.1_ASM966v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA263 158878 SAMD00061098 ASM966v1 Complete Genome 2016-09-28T01:02:47.811 Juntendo Univ. 98.92 99.51 0.08 100 1.45 GCF_000009665.1 2691 2894 2894 126 16 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_000009865.1 HMT-120 JCSC1435 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus JCSC1435 4 2697861 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/009/865/GCA_000009865.1_ASM986v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA12508 279808 SAMD00061066 ASM986v1 Complete Genome 2016-09-28T01:02:21.917 NITE 99.32 99.62 0 99.99 0.06 GCF_000009865.1 2600 2779 2779 99 16 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_000010005.1 HMT-818 JCM 1112 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-818 Limosilactobacillus reuteri JCM 1112 1 2039414 38.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/010/005/GCA_000010005.1_ASM1000v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus reuteri PRJDA19011 557433 SAMD00060920 ASM1000v1 Complete Genome 2016-09-28T01:00:28.206 Kitasato Institute for Life Sciences 99.99 98.9 0 99.8 0.48 GCF_000010005.1 2020 2175 2175 71 18 65 1 Limosilactobacillus_reuteri_homd_HMT_818 GCA_000010185.1 HMT-662 ATCC 29328 Named Cultivated Nasal (Abundance: Medium) HMT-662 Finegoldia magna ATCC 29328 2 1986740 32.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/010/185/GCA_000010185.1_ASM1018v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia;s__Finegoldia magna_H PRJDA18981 334413 SAMD00060918 ASM1018v1 Complete Genome 2016-09-28T01:00:26.810 Kitasato Institute for Life Sciences 91.13 99.39 0 99.96 0.25 GCF_000010185.1 1842 1930 1930 26 12 49 1 Finegoldia_magna_homd_HMT_662 GCA_000010445.1 HMT-550 Mu3 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus Mu3 1 2880168 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/010/445/GCA_000010445.1_ASM1044v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJDA18509 418127 SAMD00060910 ASM1044v1 Complete Genome 2016-09-28T01:00:21.079 Juntendo Universit 98.92 99.51 0.08 100 0.58 GCF_000010445.1 2663 2866 2866 125 16 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000010465.1 HMT-550 Newman Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus Newman 1 2878897 32.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/010/465/GCA_000010465.1_ASM1046v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJDA18801 426430 SAMD00060913 ASM1046v1 Complete Genome 2016-09-28T01:00:23.206 Juntendo University School of Medicine, Department of Bacteriology 99.91 99.46 0.08 100 0.24 GCF_000010465.1 2697 2893 2893 117 16 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_000010485.1 HMT-574 SE15 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-574 Escherichia coli SE15 2 4839683 50.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/010/485/GCA_000010485.1_ASM1048v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli PRJDA19053 431946 SAMD00060923 ASM1048v1 Complete Genome 2016-09-28T01:00:30.305 Kitasato University 99.56 99.97 0.33 100 0.21 GCF_000010485.1 4438 4767 4767 220 22 86 1 Escherichia_coli_homd_HMT_574 GCA_000010505.1 HMT-619 ATCC 33277 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis ATCC 33277 1 2354886 48.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/010/505/GCA_000010505.1_ASM1050v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJDA19051 431947 SAMD00060922 ASM1050v1 Complete Genome 2016-09-28T01:00:29.610 Kitasato University 99.99 99.92 0 99.98 0.17 GCF_000010505.1 1958 2038 2038 14 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000011025.1 HMT-681 DY-18 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 DY-18 1 2264603 59.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/025/GCA_000011025.1_ASM1102v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJDA38547 680646 SAMD00060968 ASM1102v1 Complete Genome 2016-09-28T01:01:03.414 Department of Bacteriology, Osaka Dental University 94.09 99.33 0 100 0.01 GCF_000011025.1 1721 1794 1794 12 11 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_000011025.1 HMT-681 DY-18 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 DY-18 1 2264603 59.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/025/GCA_000011025.1_ASM1102v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJDA38547 680646 SAMD00060968 ASM1102v1 Complete Genome 2016-09-28T01:01:03.414 Department of Bacteriology, Osaka Dental University 94.09 99.33 0 100 0.01 GCF_000011025.1 1721 1794 1794 12 11 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_000011165.1 HMT-733 J138 Named Cultivated Pathogen (Abundance: Scarce) HMT-733 Chlamydia pneumoniae J138 1 1226565 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/165/GCA_000011165.1_ASM1116v1 d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila;s__Chlamydophila pneumoniae PRJNA257 138677 SAMD00061097 ASM1116v1 Complete Genome 2016-09-28T01:02:47.050 Yamaguchi/Kyushu U. 99.92 99.49 0 99.35 0.1 GCF_000011165.1 1051 1096 1096 3 3 38 1 Chlamydia_pneumoniae_homd_HMT_733 GCA_000011265.1 HMT-550 MW2 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus MW2 1 2820462 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/265/GCA_000011265.1_ASM1126v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA306 196620 SAMD00061104 ASM1126v1 Complete Genome 2016-09-28T01:02:52.124 NITE 99.05 99.51 0.08 100 0.15 GCF_000011265.1 2564 2761 2761 116 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000011505.1 HMT-550 MRSA252 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus MRSA252 1 2902619 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/505/GCA_000011505.1_ASM1150v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA265 282458 SAMEA1705935 ASM1150v1 Complete Genome 2010-11-05T17:16:38.903 Sanger Institute 97.88 99.51 0.22 100 0.39 GCF_000011505.1 2704 2907 2907 126 16 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_000011525.1 HMT-550 MSSA476 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus MSSA476 2 2820454 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/525/GCA_000011525.1_ASM1152v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA266 282459 SAMEA1705922 ASM1152v1 Complete Genome 2010-11-05T17:16:38.653 Sanger Institute 99.05 99.51 0.08 100 0.1 GCF_000011525.1 2568 2765 2765 117 19 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_000011925.1 HMT-601 RP62A Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis RP62A 2 2643840 32.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/925/GCA_000011925.1_ASM1192v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA64 176279 SAMN02603975 ASM1192v1 Complete Genome 2014-01-30T14:54:11.047 TIGR 99.36 99.81 0 100 0.19 GCF_000011925.1 2434 2595 2595 81 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_000012045.1 HMT-550 COL Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus COL 2 2813862 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/012/045/GCA_000012045.1_ASM1204v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA238 93062 SAMN02603996 ASM1204v1 Complete Genome 2014-01-30T14:54:14.273 TIGR 99.93 99.43 0.08 100 0.13 GCF_000012045.1 2576 2765 2765 115 19 54 1 Staphylococcus_aureus_homd_HMT_550 GCA_000012185.1 HMT-641 86-028NP Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 86-028NP 1 1914490 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/012/185/GCA_000012185.1_ASM1218v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA11752 281310 SAMN02603157 ASM1218v1 Complete Genome 2014-01-30T11:19:37.127 Columbus Childrens Research Institute and The Ohio State University, Pediatrics, USA 98.69 99.77 0 100 0 GCF_000012185.1 1835 1946 1946 33 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_000012825.1 HMT-978 ATCC 8482 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-978 Phocaeicola vulgatus ATCC 8482 1 5163189 42.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/012/825/GCA_000012825.1_ASM1282v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus PRJNA13378 435590 SAMN02604309 ASM1282v1 Complete Genome 2014-01-30T15:13:24.060 Washington University (WashU) 99.99 99.25 0.94 100 0.38 GCF_000012825.1 4195 4319 4319 21 21 81 1 Phocaeicola_vulgatus_homd_HMT_978 GCA_000012845.1 HMT-973 ATCC 8503 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-973 Parabacteroides distasonis ATCC 8503 1 4811379 45.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/012/845/GCA_000012845.1_ASM1284v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis PRJNA13485 435591 SAMN02604310 ASM1284v1 Complete Genome 2014-01-30T15:13:24.106 Washington University (WashU) 99.99 99.42 0.38 99.97 1.28 GCF_000012845.1 3995 4115 4115 15 21 83 1 Parabacteroides_distasonis_homd_HMT_973 GCA_000013425.1 HMT-550 NCTC 8325 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus NCTC 8325 1 2821361 32.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/013/425/GCA_000013425.1_ASM1342v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA237 93061 SAMN02604235 ASM1342v1 Complete Genome 2014-01-30T15:13:19.920 University of Oklahoma Health Sciences Center 99.94 99.51 0.08 100 0.3 GCF_000013425.1 2630 2824 2824 115 16 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_000013465.1 HMT-550 USA300_FPR3757 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus USA300_FPR3757 4 2917469 32.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/013/465/GCA_000013465.1_ASM1346v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA16313 451515 SAMN02604150 ASM1346v1 Complete Genome 2014-01-30T15:13:14.890 University of California, San Francisco 99.92 99.51 0.08 100 0.72 GCF_000013465.1 2698 2887 2887 117 16 55 1 Staphylococcus_aureus_homd_HMT_550 GCA_000014105.1 HMT-669 053442 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 053442 1 2153416 51.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/014/105/GCA_000014105.1_ASM1410v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA16393 374833 SAMN02603605 ASM1410v1 Complete Genome 2014-01-30T14:21:41.920 Microbial Genome Center of ChMPH 97.36 99.75 0.38 99.97 0 GCF_000014105.1 1995 2095 2095 28 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_000014205.1 HMT-758 SK36 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK36 1 2388435 43.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/014/205/GCA_000014205.1_ASM1420v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_H PRJNA13942 388919 SAMN02604299 ASM1420v1 Complete Genome 2014-01-30T15:13:23.410 Virginia Commonwealth University 95.27 100 0 99.99 0.1 GCF_000014205.1 2274 2376 2376 28 12 61 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000014365.2 HMT-734 D39 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae D39 1 2046116 39.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/014/365/GCA_000014365.2_ASM1436v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA16374 373153 SAMN02604051 ASM1436v2 Complete Genome 2014-01-30T14:54:18.913 TIGR 98.74 99.6 0.21 100 0.1 GCF_000014365.2 1997 2147 2147 79 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000014425.1 HMT-615 ATCC 33323 Named Cultivated Vaginal (Abundance: High) HMT-615 Lactobacillus gasseri ATCC 33323 1 1894360 35.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/014/425/GCA_000014425.1_ASM1442v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus gasseri PRJNA84 324831 SAMN02598542 ASM1442v1 Complete Genome 2014-01-28T10:41:20.450 US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc. 99.99 98.45 0 99.98 0.03 GCF_000014425.1 1808 1939 1939 34 18 78 1 Lactobacillus_gasseri_homd_HMT_615 GCA_000015545.1 HMT-209 JS42 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus JS42 3 4585154 66.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/015/545/GCA_000015545.1_ASM1554v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA15685 232721 SAMN02598333 ASM1554v1 Complete Genome 2014-01-28T10:41:03.740 DOE Joint Genome Institute 99.67 0.15 100 0.9 GCF_000015545.1 4335 4517 4517 119 9 53 1 Acidovorax_ebreus_homd_HMT_209 GCA_000016465.1 HMT-641 PittEE Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae PittEE 1 1813033 38.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/016/465/GCA_000016465.1_ASM1646v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA16400 374930 SAMN02603084 ASM1646v1 Complete Genome 2014-01-30T11:19:30.903 Center for Genomic Sciences, Allegheny-Singer Research Institute 97.21 99.55 0.23 99.83 0.55 GCF_000016465.1 1770 1878 1878 30 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_000016485.1 HMT-641 PittGG Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae PittGG 1 1887192 38.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/016/485/GCA_000016485.1_ASM1648v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA16401 374931 SAMN02603085 ASM1648v1 Complete Genome 2014-01-30T11:19:30.967 Center for Genomic Sciences, Allegheny-Singer Research Institute 97.29 99.06 0.29 99.93 0.85 GCF_000016485.1 1960 2070 2070 35 19 55 1 Haemophilus_influenzae_homd_HMT_641 GCA_000016805.1 HMT-550 JH9 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus JH9 2 2937129 32.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/016/805/GCA_000016805.1_ASM1680v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA15757 359786 SAMN02598343 ASM1680v1 Complete Genome 2014-01-28T10:41:04.307 US DOE Joint Genome Institute 98.96 99.51 0.66 100 0.72 GCF_000016805.1 2742 2947 2947 125 19 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_000016825.1 HMT-818 DSM 20016 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-818 Limosilactobacillus reuteri DSM 20016 1 1999618 38.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/016/825/GCA_000016825.1_ASM1682v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus reuteri PRJNA15766 557436 SAMN02598351 ASM1682v1 Complete Genome 2014-01-28T10:41:04.786 US DOE Joint Genome Institute 99.99 98.9 0 99.86 0.67 GCF_000016825.1 1983 2138 2138 68 18 68 1 Limosilactobacillus_reuteri_homd_HMT_818 GCA_000017005.1 HMT-622 Challis substr. CH1 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii Challis substr. CH1 1 2196662 40.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/017/005/GCA_000017005.1_ASM1700v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA66 467705 SAMN02603977 ASM1700v1 Complete Genome 2014-01-30T14:54:11.193 TIGR 95.48 100 0 100 0.14 GCF_000017005.1 2052 2150 2150 26 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_000017085.1 HMT-550 TCH1516 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus TCH1516 3 2903081 32.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/017/085/GCA_000017085.1_ASM1708v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA19489 451516 SAMN00253845 ASM1708v1 Complete Genome 2011-03-28T12:36:20.720 Baylor College of Medicine 99.92 99.51 0.64 100 0.14 GCF_000017085.1 2694 2891 2891 118 16 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_000017405.1 HMT-544 ATCC 49188 Named Cultivated Pathogen (Abundance: Scarce) HMT-544 Brucella anthropi ATCC 49188 6 5205777 56.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/017/405/GCA_000017405.1_ASM1740v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Brucella;s__Brucella anthropi PRJNA19485 439375 SAMN02598421 ASM1740v1 Complete Genome 2014-01-28T10:41:08.893 US DOE Joint Genome Institute 99.99 100 0 100 0.63 GCF_000017405.1 5000 5153 5153 78 12 62 1 Brucella_anthropi_homd_HMT_544 GCA_000017465.2 HMT-580 525.92 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus 525.92 1 1971270 44.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/017/465/GCA_000017465.2_ASM1746v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA17161 360105 SAMN02604055 ASM1746v2 Complete Genome Newbler v. 2.6 2014-01-30T14:54:19.167 Sanger dideoxy sequencing; Illumina TIGR 95.9 99.88 0 99.95 0.17 GCF_000017465.2 1941 1999 1999 4 6 47 1 Campylobacter_curvus_homd_HMT_580 GCA_000017725.2 HMT-433 13826 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 13826 3 2099413 39.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/017/725/GCA_000017725.2_ASM1772v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA17159 360104 SAMN02604054 ASM1772v2 Complete Genome Newbler v. 2.6 2014-01-30T14:54:19.100 Sanger dideoxy sequencing; Illumina TIGR 207.0x 88.63 99.51 0.19 99.99 0.09 GCF_000017725.2 2072 2130 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_000017725.2 HMT-433 13826 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 13826 3 2099413 39.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/017/725/GCA_000017725.2_ASM1772v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA17159 360104 SAMN02604054 ASM1772v2 Complete Genome Newbler v. 2.6 2014-01-30T14:54:19.100 Sanger dideoxy sequencing; Illumina TIGR 207.0x 88.63 99.51 0.19 99.99 0.09 GCF_000017725.2 2072 2130 0 4 6 47 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_000018665.1 HMT-023 SPH-1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-023 Delftia acidovorans SPH-1 1 6767514 66.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/018/665/GCA_000018665.1_ASM1866v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas acidovorans PRJNA17413 398578 SAMN00623041 ASM1866v1 Complete Genome 2011-06-09T08:58:12.030 US DOE Joint Genome Institute 97.82 99.85 0.1 100 0.03 GCF_000018665.1 6115 6309 6309 95 15 83 1 Delftia_acidovorans_homd_HMT_023 GCA_000018965.1 HMT-734 70585 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 70585 1 2184682 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/018/965/GCA_000018965.1_ASM1896v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA28043 488221 SAMN02603446 ASM1896v1 Complete Genome 2014-01-30T14:21:30.417 J. Craig Venter Institute 98.71 99.39 0.32 100 0.61 GCF_000018965.1 2194 2345 2345 80 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000018985.1 HMT-734 JJA Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae JJA 1 2120234 39.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/018/985/GCA_000018985.1_ASM1898v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA28039 488222 SAMN02603444 ASM1898v1 Complete Genome 2014-01-30T14:21:30.307 J. Craig Venter Institute 98.7 99.82 0.2 100 0.45 GCF_000018985.1 2095 2241 2241 74 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000019005.1 HMT-734 P1031 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae P1031 1 2111882 39.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/019/005/GCA_000019005.1_ASM1900v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA28041 488223 SAMN02603445 ASM1900v1 Complete Genome 2014-01-30T14:21:30.360 J. Craig Venter Institute 99.45 99.6 0.21 100 0.1 GCF_000019005.1 2101 2249 2249 77 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000019025.1 HMT-734 Taiwan19F-14 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae Taiwan19F-14 1 2112148 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/019/025/GCA_000019025.1_ASM1902v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA28037 487213 SAMN02603443 ASM1902v1 Complete Genome 2014-01-30T14:21:30.260 J. Craig Venter Institute 98.62 99.42 0.2 100 0.18 GCF_000019025.1 2085 2237 2237 81 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000019045.1 HMT-182 WK1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-182 Anoxybacillus flavithermus WK1 1 2846746 41.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/019/045/GCA_000019045.1_ASM1904v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus;s__Anoxybacillus flavithermus PRJNA28245 491915 SAMN02604185 ASM1904v1 Complete Genome 2014-01-30T15:13:16.980 University of Hawaii at Manoa 99.4 0.56 100 0.05 GCF_000019045.1 2935 3253 3253 217 24 76 1 Anoxybacillus_flavithermus_homd_HMT_182 GCA_000019265.1 HMT-734 Hungary19A-6 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae Hungary19A-6 1 2245615 39.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/019/265/GCA_000019265.1_ASM1926v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA28035 487214 SAMN02603442 ASM1926v1 Complete Genome 2014-01-30T14:21:30.210 J. Craig Venter Institute 98.36 99.6 0.21 100 0.22 GCF_000019265.1 2240 2394 2394 82 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000019345.1 HMT-799 ATCC 27815 Named Cultivated Vaginal (Abundance: Medium) HMT-799 Ureaplasma parvum ATCC 27815 1 751679 25.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/019/345/GCA_000019345.1_ASM1934v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum PRJNA19087 505682 SAMN02604063 ASM1934v1 Complete Genome 2014-01-30T14:54:19.673 TIGR 99.05 0 97.77 0.06 GCF_000019345.1 1259 1300 1300 4 6 30 1 Ureaplasma_parvum_homd_HMT_799 GCA_000019425.1 HMT-574 K-12 substr. DH10B Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-574 Escherichia coli K-12 substr. DH10B 1 4686137 50.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/019/425/GCA_000019425.1_ASM1942v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli PRJNA20079 316385 SAMN02604262 ASM1942v1 Complete Genome 2014-01-30T15:13:21.370 University of Wisconsin-Madison 99.45 98.86 1.82 100 2.44 GCF_000019425.1 4388 4767 4767 269 22 87 1 Escherichia_coli_homd_HMT_574 GCA_000019825.1 HMT-734 G54 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae G54 1 2078953 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/019/825/GCA_000019825.1_ASM1982v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA29047 512566 SAMN02603350 ASM1982v1 Complete Genome 2014-01-30T11:19:50.923 Italy: Genova respiratory sample Institute for Genome Sciences 98.66 99.42 0.2 100 1.02 GCF_000019825.1 2067 2207 2207 69 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000019985.1 HMT-734 CGSP14 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae CGSP14 1 2209198 39.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/019/985/GCA_000019985.1_ASM1998v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA29179 516950 SAMN02603015 ASM1998v1 Complete Genome 2014-01-30T11:19:25.910 Beijing Institute of Genomics 98.5 99.6 0.21 100 2.23 GCF_000019985.1 2159 2311 2311 81 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000020225.1 HMT-963 ATCC BAA-835 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-963 Akkermansia muciniphila ATCC BAA-835 1 2664102 55.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/020/225/GCA_000020225.1_ASM2022v1 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila PRJNA20089 349741 SAMN00138213 ASM2022v1 Complete Genome 2010-11-23T10:48:01.957 US DOE Joint Genome Institute (JGI-PGF) 99.99 97.96 0 100 0.25 GCF_000020225.1 2182 2252 2252 6 9 54 1 Akkermansia_muciniphila_homd_HMT_963 GCA_000020465.1 HMT-984 DSM 245 Named Cultivated Taxonomic Reference (Abundance: Scarce) HMT-984 Chlorobium limicola DSM 245 1 2763181 51.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/020/465/GCA_000020465.1_ASM2046v1 d__Bacteria;p__Bacteroidota_A;c__Chlorobiia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium;s__Chlorobium limicola PRJNA12606 290315 SAMN02598270 ASM2046v1 Complete Genome 2014-01-28T10:40:59.536 US DOE Joint Genome Institute 99.98 0 99.99 0.16 GCF_000020465.1 2560 2675 2675 62 4 48 1 GCA_000020605.1 HMT-960 ATCC 33656 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-960 Agathobacter rectalis ATCC 33656 1 3449685 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/020/605/GCA_000020605.1_ASM2060v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__Agathobacter rectalis PRJNA29071 515619 SAMN02603082 ASM2060v1 Complete Genome 2014-01-30T11:19:30.796 Center for Genome Sciences, Washington University School of Medicine 99.99 99.28 0 99.99 0.28 GCF_000020605.1 3270 3460 3460 120 10 59 1 Agathobacter_rectalis_homd_HMT_960 GCA_000020665.1 HMT-663 R551-3 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-663 Stenotrophomonas maltophilia R551-3 1 4573969 66.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/020/665/GCA_000020665.1_ASM2066v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas maltophilia_L PRJNA17107 391008 SAMN00623065 ASM2066v1 Complete Genome 2011-06-09T08:58:12.203 US DOE Joint Genome Institute 91.22 100 0.03 100 0.29 GCF_000020665.1 4043 4168 4168 30 13 81 1 Stenotrophomonas_maltophilia_homd_HMT_663 GCA_000021865.1 HMT-857 SB 1003 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-857 Rhodobacter capsulatus SB 1003 2 3871920 66.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/021/865/GCA_000021865.1_ASM2186v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter;s__Rhodobacter capsulatus_B PRJNA55 272942 SAMN02604080 ASM2186v1 Complete Genome 2014-01-30T14:54:20.680 Univ. Chicago 93.09 99.09 0.63 99.99 0.46 GCF_000021865.1 3618 3720 3720 29 12 60 1 Rhodobacter_capsulatus_homd_HMT_857 GCA_000022305.1 HMT-209 TPSY Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus TPSY 1 3796573 66.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/022/305/GCA_000022305.1_ASM2230v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA29975 535289 SAMN00001444 ASM2230v1 Complete Genome 2008-12-31T12:42:02.166 US DOE Joint Genome Institute (JGI-PGF) 99.93 0.62 99.99 0.09 GCF_000022305.1 3523 3607 3607 19 9 55 1 Acidovorax_ebreus_homd_HMT_209 GCA_000022905.1 HMT-034 DSM 44827; ATCC 700975 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 DSM 44827; ATCC 700975 2 2819226 60.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/022/905/GCA_000022905.1_ASM2290v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum_F PRJNA37279 548476 SAMN02603064 ASM2290v1 Complete Genome 2014-01-30T11:19:29.390 Center for BioTechnology, Bielefeld University 99.99 99.56 0 100 0.2 GCF_000022905.1 2654 2730 2730 7 13 55 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_000022905.1 HMT-034 DSM 44827; ATCC 700975 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 DSM 44827; ATCC 700975 2 2819226 60.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/022/905/GCA_000022905.1_ASM2290v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum_F PRJNA37279 548476 SAMN02603064 ASM2290v1 Complete Genome 2014-01-30T11:19:29.390 Center for BioTechnology, Bielefeld University 99.99 99.56 0 100 0.2 GCF_000022905.1 2654 2730 2730 7 13 55 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_000022985.1 HMT-545 NJ8700 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus NJ8700 1 2313035 42.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/022/985/GCA_000022985.1_ASM2298v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA36579 634176 SAMN02602980 ASM2298v1 Complete Genome 2014-01-30T11:19:22.120 American Museum of Natural History 96.9 99.66 0.04 100 0.1 GCF_000022985.1 2192 2324 2324 54 19 58 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_000023145.1 HMT-049 DSM 44385 Named Cultivated Skin (Abundance: High) HMT-049 Corynebacterium kroppenstedtii DSM 44385 1 2446804 57.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/023/145/GCA_000023145.1_ASM2314v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kroppenstedtii PRJNA38011 645127 SAMN02603033 ASM2314v1 Complete Genome 2014-01-30T11:19:27.140 Bielefeld University, Center for Biotechnology 99.99 97.86 0 99.99 0.01 GCF_000023145.1 2110 2182 2182 15 9 47 1 Corynebacterium_kroppenstedtii_homd_HMT_049 GCA_000023205.1 HMT-087 NCTC 2665 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-087 Micrococcus luteus NCTC 2665 1 2501097 73.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/023/205/GCA_000023205.1_ASM2320v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus;s__Micrococcus luteus PRJNA20655 465515 SAMN00000281 ASM2320v1 Complete Genome 2008-06-13T10:44:04.443 US DOE Joint Genome Institute (JGI-PGF) 99.98 98.25 0 100 0.17 GCF_000023205.1 2281 2353 2353 12 6 53 1 Micrococcus_luteus_homd_HMT_087 GCA_000023285.1 HMT-700 DSM 7271 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea DSM 7271 1 2612925 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/023/285/GCA_000023285.1_ASM2328v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA29403 521097 SAMN00001911 ASM2328v1 Complete Genome Newbler 1.1.02.15, Phrap 2009-02-19T18:10:02.340 US DOE Joint Genome Institute (JGI-PGF) 99.99 100 0 99.99 0.02 GCF_000023285.1 2182 2251 2251 9 12 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_000023845.1 HMT-579 DSM 15641 Named Cultivated Oral (Abundance: Scarce) HMT-579 Cryptobacterium curtum DSM 15641 1 1617804 50.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/023/845/GCA_000023845.1_ASM2384v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Cryptobacterium;s__Cryptobacterium curtum PRJNA20739 469378 SAMN02598434 ASM2384v1 Complete Genome Newbler 1.1.03.24 , PGA 2014-01-28T10:41:09.880 US DOE Joint Genome Institute (JGI-PGF) 100 0 99.95 0.01 GCF_000023845.1 1353 1419 1419 7 9 49 1 Cryptobacterium_curtum_homd_HMT_579 GCA_000023905.1 HMT-563 DSM 1135 Named Cultivated Oral (Abundance: Medium) HMT-563 Leptotrichia buccalis DSM 1135 1 2465610 29.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/023/905/GCA_000023905.1_ASM2390v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia buccalis PRJNA29445 523794 SAMN00002593 ASM2390v1 Complete Genome 2009-06-24T12:11:02.376 US DOE Joint Genome Institute (JGI-PGF) 100 1.14 99.98 0.18 GCF_000023905.1 2298 2405 2405 45 15 46 1 Leptotrichia_buccalis_homd_HMT_563 GCA_000023925.1 HMT-855 DSM 20547 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-855 Kytococcus sedentarius DSM 20547 1 2785024 71.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/023/925/GCA_000023925.1_ASM2392v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Kytococcus;s__Kytococcus sedentarius PRJNA21067 478801 SAMN02598443 ASM2392v1 Complete Genome Phrap 2014-01-28T10:41:10.750 USA US DOE Joint Genome Institute (JGI-PGF) 99.99 94.68 0 99.97 0.3 GCF_000023925.1 2617 2699 2699 24 6 51 1 Kytococcus_sedentarius_homd_HMT_855 GCA_000024105.1 HMT-738 DSM 20548 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-738 Anaerococcus prevotii DSM 20548 2 1998633 35.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/024/105/GCA_000024105.1_ASM2410v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus prevotii PRJNA29533 525919 SAMN00001908 ASM2410v1 Complete Genome 2009-02-19T15:36:01.926 US DOE Joint Genome Institute (JGI-PGF) 99.99 99.39 0 99.18 0.23 GCF_000024105.1 1825 1912 1912 26 12 48 1 Anaerococcus_prevotii_homd_HMT_738 GCA_000024145.1 HMT-733 LPCoLN Named Cultivated Pathogen (Abundance: Scarce) HMT-733 Chlamydia pneumoniae LPCoLN 2 1248550 40.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/024/145/GCA_000024145.1_ASM2414v1 d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila;s__Chlamydophila pneumoniae PRJNA17947 406984 SAMN02604061 ASM2414v1 Complete Genome 2014-01-30T14:54:19.523 TIGR 99.06 99.49 0 99.32 0.17 GCF_000024145.1 1035 1080 1080 3 3 38 1 Chlamydia_pneumoniae_homd_HMT_733 GCA_000024225.1 HMT-723 DSM 20469 Named Cultivated Oral (Abundance: High) HMT-723 Lancefieldella parvula DSM 20469 1 1543805 45.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/024/225/GCA_000024225.1_ASM2422v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__Lancefieldella parvula PRJNA29401 521095 SAMN00001907 ASM2422v1 Complete Genome 2009-02-19T15:05:02.570 US DOE Joint Genome Institute (JGI-PGF) 100 0 99.99 0.28 GCF_000024225.1 1362 1418 1418 8 3 45 0 Lancefieldella_parvula_homd_HMT_723 GCA_000024265.1 HMT-654 DSM 2243 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-654 Eggerthella lenta DSM 2243 1 3632260 64.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/024/265/GCA_000024265.1_ASM2426v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella;s__Eggerthella lenta PRJNA21093 479437 SAMN00002594 ASM2426v1 Complete Genome Newbler version 1.1.02.15, Phrap 2009-06-24T12:11:10.016 US DOE Joint Genome Institute (JGI-PGF) 99.99 100 0 100 0.23 GCF_000024265.1 3112 3187 3187 13 9 52 1 Eggerthella_lenta_homd_HMT_654 GCA_000024445.1 HMT-588 Bd1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-588 Bifidobacterium dentium Bd1 1 2636367 58.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/024/445/GCA_000024445.1_ASM2444v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium PRJNA17583 401473 SAMN02603177 ASM2444v1 Complete Genome 2014-01-30T11:19:38.623 Department of Genetics, Anthropology and Evolution, University of Parma, Parma, Italy 99.99 100 0 99.98 0.63 GCF_000024445.1 2138 2213 2213 9 9 56 1 Bifidobacterium_dentium_homd_HMT_588 GCA_000024585.1 HMT-550 ED98 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus ED98 4 2847542 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/024/585/GCA_000024585.1_ASM2458v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA39547 681288 SAMN02604165 ASM2458v1 Complete Genome 2014-01-30T15:13:15.703 University of Edinburgh 98.95 99.51 0.08 100 0.07 GCF_000024585.1 2643 2841 2841 119 16 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_000024925.1 HMT-856 DSM 10542 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-856 Sanguibacter keddieii DSM 10542 1 4253413 71.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/024/925/GCA_000024925.1_ASM2492v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter;s__Sanguibacter keddieii PRJNA19711 446469 SAMN02598426 ASM2492v1 Complete Genome Newbler version 1.1.02.15, Phrap 2014-01-28T10:41:09.296 Spain US DOE Joint Genome Institute (JGI-PGF) 100 0.1 100 0.01 GCF_000024925.1 3709 3799 3799 19 12 58 1 GCA_000024945.1 HMT-161 DSM 2008 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula DSM 2008 1 2132142 38.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/024/945/GCA_000024945.1_ASM2494v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula PRJNA21091 479436 SAMN00002609 ASM2494v1 Complete Genome Newbler, Phrap 2009-06-25T17:13:04.046 US DOE Joint Genome Institute (JGI-PGF) 99.99 100 0 100 0.1 GCF_000024945.1 1863 1944 1944 20 12 48 1 Veillonella_parvula_homd_HMT_161 GCA_000025085.1 HMT-128 HKU09-01 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis HKU09-01 1 2658366 33.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/025/085/GCA_000025085.1_ASM2508v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA42395 698737 SAMN02603957 ASM2508v1 Complete Genome 2014-01-30T14:54:09.700 Hong Kong clinical specimen The University of Hong Kong 99.55 99.61 0 100 0.38 GCF_000025085.1 2471 2638 2638 86 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_000025145.2 HMT-550 04-02981 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 04-02981 1 2821452 32.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/025/145/GCA_000025145.2_ASM2514v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA34809 703339 SAMN02603764 ASM2514v1 Complete Genome 2014-01-30T14:21:50.980 Robert Koch Institut 98.96 GCF_000025145.1 2586 2786 2786 118 18 63 1 Staphylococcus_aureus_homd_HMT_550 GCA_000025205.1 HMT-868 409-05 Named Cultivated Vaginal (Abundance: High) HMT-868 Gardnerella swidsinskii 409-05 1 1617545 42.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/025/205/GCA_000025205.1_ASM2520v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium swidsinskii PRJNA31001 553190 SAMN02299422 ASM2520v1 Complete Genome 2013-08-02T12:07:39.393 not determined J. Craig Venter Institute 88.16 99.93 0 99.96 0.16 GCF_000025205.1 1267 1334 1334 15 6 45 1 Gardnerella_swidsinskii_homd_HMT_868 GCA_000025765.1 HMT-530 SK137 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes SK137 1 2495334 60.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/025/765/GCA_000025765.1_ASM2576v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA31005 553199 SAMN00000718 ASM2576v1 Complete Genome Newbler Assembler v. 1 1.03.24-64-7 2008-10-03T13:55:02.016 not determined 454 J. Craig Venter Institute 22.4x 99.74 98.94 0.03 100 0.13 GCF_000025765.1 2305 2385 2385 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_000026525.1 HMT-749 Lc 705 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-749 Lacticaseibacillus rhamnosus Lc 705 2 3033106 46.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/026/525/GCA_000026525.1_ASM2652v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus PRJEA32197 568704 SAMEA2272728 ASM2652v1 Complete Genome 2013-12-20T12:43:55.770 Institute of Biotechnology, University of Helsinki, Finland 99.91 99.46 0 99.92 0.36 GCF_000026525.1 2857 2971 2971 37 15 61 1 Lacticaseibacillus_rhamnosus_homd_HMT_749 GCA_000026665.1 HMT-734 ATCC 700669 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae ATCC 700669 1 2221315 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/026/665/GCA_000026665.1_ASM2666v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJEA31233 561276 SAMEA1705947 ASM2666v1 Complete Genome 2010-11-05T17:16:38.176 Wellcome Trust Sanger Institute 98.6 99.42 0.25 100 0.26 GCF_000026665.1 2183 2342 2342 87 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000026685.1 HMT-823 na Named Cultivated Pathogen (Abundance: Scarce) HMT-823 Mycobacterium leprae na 1 3268071 57.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/026/685/GCA_000026685.1_ASM2668v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium leprae PRJEA31271 561304 SAMEA2271916 ASM2668v1 Complete Genome 2013-12-20T12:42:33.953 Brazil Institut Pasteur 88.22 0.33 99.99 0.01 GCF_000026685.1 3964 4035 4035 21 3 46 1 Mycobacterium_leprae_homd_HMT_823 GCA_000026965.1 HMT-669 8013 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 8013 1 2277550 51.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/026/965/GCA_000026965.1_ASM2696v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJEA34687 604162 SAMEA2272745 ASM2696v1 Complete Genome 2013-12-20T12:43:57.390 INSERM 97.41 99.75 0.19 99.98 0 GCF_000026965.1 2110 2226 2226 43 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_000027045.1 HMT-550 TW20 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus TW20 3 3075806 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/027/045/GCA_000027045.1_ASM2704v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJEA36647 663951 SAMEA2272282 ASM2704v1 Complete Genome 2013-12-20T12:43:16.320 United Kingdom:London The Wellcome Trust Sanger Institute 99.48 99.51 0.08 100 0.38 GCF_000027045.1 2894 3099 3099 125 16 63 1 Staphylococcus_aureus_homd_HMT_550 GCA_000027165.1 HMT-677 B6 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis B6 1 2146611 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/027/165/GCA_000027165.1_ASM2716v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AR PRJNA16302 365659 SAMEA3138244 ASM2716v1 Complete Genome 2014-11-21T08:58:25.160 Germany Department of Microbiology, University of Kaiserslautern 93.87 99.82 0.2 99.96 0.38 GCF_000027165.1 2048 2175 2175 53 12 61 1 Streptococcus_mitis_homd_HMT_677 GCA_000027305.1 HMT-641 Rd KW20 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae Rd KW20 1 1830138 38.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/027/305/GCA_000027305.1_ASM2730v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA219 71421 SAMN02603991 ASM2730v1 Complete Genome 2014-01-30T14:54:13.910 TIGR 97.41 99.67 0.22 100 1.04 GCF_000027305.1 1748 1858 1858 33 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_000027325.1 HMT-616 G-37 Named Cultivated Pathogen (Abundance: Scarce) HMT-616 Mycoplasmoides genitalium G-37 1 580076 31.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/027/325/GCA_000027325.1_ASM2732v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides genitalium PRJNA97 243273 SAMN02603983 ASM2732v1 Complete Genome 2014-01-30T14:54:12.143 TIGR 99.99 99.25 0 98.9 0.08 GCF_000027325.1 991 1033 1033 2 3 36 1 Mycoplasmoides_genitalium_homd_HMT_616 GCA_000069945.1 HMT-853 DSM 7109 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-853 Corynebacterium urealyticum DSM 7109 1 2369219 64.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/069/945/GCA_000069945.1_ASM6994v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium urealyticum PRJNA29211 504474 SAMEA3138282 ASM6994v1 Complete Genome 2014-11-21T08:58:29.917 Bielefeld Univ 99.99 100 0 99.99 1.39 GCF_000069945.1 2002 2072 2072 8 9 52 1 Corynebacterium_urealyticum_homd_HMT_853 GCA_000083565.1 HMT-669 alpha14 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis alpha14 1 2145295 51.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/083/565/GCA_000083565.1_ASM8356v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA39689 662598 SAMEA3138289 ASM8356v1 Complete Genome 2014-11-21T08:58:30.847 Bielefeld University 97.3 99.75 0.19 99.99 0 GCF_000083565.1 1973 2068 2068 23 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_000090875.1 HMT-014 F0314 Named Cultivated Oral (Abundance: Medium) HMT-014 Neisseria oralis F0314 11 2515760 53.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/090/875/GCA_000090875.1_ASM9087v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria oralis PRJNA42547 641149 SAMN02463843 ASM9087v1 Scaffold 2013-12-18T11:11:45.620 not determined missing Broad Institute 39.2x 99.24 0.34 100 0.02 GCF_000090875.1 ADEA01 2331 2494 2494 102 3 57 1 Neisseria_oralis_homd_HMT_014 GCA_000090945.1 HMT-386 F0131 Named Cultivated Oral (Abundance: Scarce) HMT-386 Anaerosphaera mikwangii F0131 11 1569385 31.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/090/945/GCA_000090945.1_ASM9094v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerosphaera;s__Anaerosphaera mikwangii PRJNA41969 575609 SAMN02463827 ASM9094v1 Scaffold 2013-12-18T11:11:43.897 not determined missing Broad Institute 48.0x 98.95 0 100 0.3 GCF_000090945.1 ADCS01 1439 1510 1510 18 5 47 1 Anaerosphaera_mikwangii_homd_HMT_386 GCA_000091085.2 HMT-733 AR39 Named Cultivated Pathogen (Abundance: Scarce) HMT-733 Chlamydia pneumoniae AR39 2 1229853 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/091/085/GCA_000091085.2_ASM9108v2 d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila;s__Chlamydophila pneumoniae PRJNA247 115711 SAMN02641564 ASM9108v2 Complete Genome 2014-02-13T12:40:45.276 missing missing TIGR 99.95 99.49 0 99.11 0.1 GCF_000091085.2 1056 1101 1101 3 3 38 1 Chlamydia_pneumoniae_homd_HMT_733 GCA_000091645.1 HMT-686 NN2025 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NN2025 1 2013587 36.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/091/645/GCA_000091645.1_ASM9164v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJDA28997 511691 SAMD00060939 ASM9164v1 Complete Genome 2016-09-28T01:00:42.644 The Institute of Medical Science, Tokyo University 99.19 100 0.56 100 0.18 GCF_000091645.1 1867 2045 2045 97 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_000092265.1 HMT-833 BBH18 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis BBH18 1 1863286 41.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/092/265/GCA_000092265.1_ASM9226v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA46869 1236608 SAMN02603777 ASM9226v1 Complete Genome 2014-01-30T14:32:58.073 Radboud University Nijmegen Medical Centre 99.2 100 0.27 100 0.01 GCF_000092265.1 1669 1743 1743 11 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_000092365.1 HMT-811 DSM 20595 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-811 Arcanobacterium haemolyticum DSM 20595 1 1986154 53.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/092/365/GCA_000092365.1_ASM9236v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Arcanobacterium;s__Arcanobacterium haemolyticum PRJNA37925 644284 SAMN02598519 ASM9236v1 Complete Genome 2014-01-28T10:41:18.680 US DOE Joint Genome Institute (JGI-PGF) 99.99 97.99 0 100 0.1 GCF_000092365.1 1828 1900 1900 8 12 51 1 Arcanobacterium_haemolyticum_homd_HMT_811 GCA_000142965.1 HMT-311 C735 Named Cultivated Oral (Abundance: High) HMT-311 Segatella oris C735 57 3346228 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/142/965/GCA_000142965.1_ASM14296v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oris PRJNA42537 563008 SAMN02463839 ASM14296v1 Scaffold 2013-12-18T11:11:45.200 not determined missing Broad Institute 14.3x 97.52 99.32 0.34 99.52 1.33 GCF_000142965.1 ADDV01 2946 3014 3014 8 8 50 2 Segatella_oris_homd_HMT_311 GCA_000143585.1 HMT-587 M567 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa M567 6 2532787 53.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/143/585/GCA_000143585.1_ASM14358v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA42539 563032 SAMN02463840 ASM14358v1 Scaffold 2013-12-18T11:11:45.313 not determined missing Broad Institute 39.0x 96.54 99.34 0 100 0.13 GCF_000143585.1 ADDW01 2167 2233 2233 12 4 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_000143745.1 HMT-861 ATCC 14917 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-861 Lactiplantibacillus plantarum ATCC 14917 9 3212261 44.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/143/745/GCA_000143745.1_ASM14374v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum PRJNA31515 525338 SAMN00001478 ASM14374v1 Scaffold Newbler Assembler v. 1.1.03.24_64 2009-01-08T15:54:02.326 not determined missing 454 Baylor College of Medicine 36.0x 99.99 99.07 2.78 100 0.53 GCF_000143745.1 ACGZ02 2999 3061 0 0 2 59 1 Lactiplantibacillus_plantarum_homd_HMT_861 GCA_000143845.1 HMT-038 DSM 7084 Named Cultivated Oral (Abundance: Scarce) HMT-038 Olsenella uli DSM 7084 1 2051896 64.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/143/845/GCA_000143845.1_ASM14384v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella;s__Olsenella uli PRJNA36641 633147 SAMN00016989 ASM14384v1 Complete Genome Newbler v. 2.3 2011-08-24T11:41:03.506 Missing gingival crevice 454/Illumina US DOE Joint Genome Institute (JGI-PGF) 30.0x 99.99 99.19 0 99.68 0.35 GCF_000143845.1 1772 1837 1837 12 3 49 1 Olsenella_uli_homd_HMT_038 GCA_000143945.1 HMT-732 FH Named Cultivated Pathogen (Abundance: Scarce) HMT-732 Mycoplasmoides pneumoniae FH 1 811088 40.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/143/945/GCA_000143945.1_ASM14394v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pneumoniae PRJNA49525 722438 SAMN02603455 ASM14394v1 Complete Genome 2014-01-30T14:21:31.013 J. Craig Venter Institute 99.95 99.22 0 98.07 0.31 GCF_000143945.1 1390 1433 1433 2 3 37 1 Mycoplasmoides_pneumoniae_homd_HMT_732 GCA_000144085.1 HMT-193 HL044PA1 Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum HL044PA1 27 2643856 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/144/085/GCA_000144085.1_ASM14408v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJNA49253 765109 SAMN00189218 ASM14408v1 Scaffold Velvet v. 0.7.57 2010-12-23T17:51:03.926 not determined missing Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 66.7x 99.94 100 0 99.99 0.27 GCF_000144085.1 ADZU01 2581 2656 2656 24 3 47 1 Cutibacterium_modestum_homd_HMT_193 GCA_000144405.1 HMT-469 ATCC 25845 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica ATCC 25845 2 3168282 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/144/405/GCA_000144405.1_ASM14440v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA31383 553174 SAMN00001916 ASM14440v1 Complete Genome Celera Assembler v. 5.42 2009-02-24T11:35:04.710 not determined 454 J. Craig Venter Institute 14.1x 99.99 99.32 0 99.97 0.01 GCF_000144405.1 2460 2535 2535 9 13 52 1 Prevotella_melaninogenica_homd_HMT_469 GCA_000144955.2 HMT-550 JKD6159 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus JKD6159 2 2839400 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/144/955/GCA_000144955.2_ASM14495v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA50759 869816 SAMN02604217 ASM14495v2 Complete Genome Trycycler+Medaka+Polypolish v. JUL-2022 2014-01-30T15:13:18.953 Oxford Nanopore MinION University of Melbourne 645.0x 97.88 99.51 0.22 100 0.17 GCF_000144955.2 2608 2806 2806 117 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000145075.1 HMT-193 HL037PA2 Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum HL037PA2 43 2614131 59.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/145/075/GCA_000145075.1_ASM14507v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJNA49281 765123 SAMN00189212 ASM14507v1 Scaffold Velvet v. 0.7.57 2010-12-23T17:43:03.990 not determined missing Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 63.6x 99.92 100 0 99.99 0.38 GCF_000145075.1 ADYH01 2522 2596 2596 24 3 46 1 Cutibacterium_modestum_homd_HMT_193 GCA_000145315.2 HMT-605 3_1_syn3 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-605 Desulfovibrio fairfieldensis 3_1_syn3 3 3663932 60.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/145/315/GCA_000145315.2_Desulfovibrio_sp3_1_syn3_V2 d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__Desulfovibrio fairfieldensis_A PRJNA42529 457398 SAMN02463836 Desulfovibrio_sp3_1_syn3_V2 Contig Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:44.913 not determined missing 454 Broad Institute 21.0x 99.41 0 99.99 0 GCF_000145315.2 ADDR02 3092 3176 3176 20 9 54 1 Desulfovibrio_fairfieldensis_homd_HMT_605 GCA_000145415.1 HMT-193 HL037PA3 Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum HL037PA3 24 2621672 59.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/145/415/GCA_000145415.1_ASM14541v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJNA49283 765124 SAMN00189213 ASM14541v1 Scaffold Velvet v. 0.7.57 2010-12-23T17:44:03.833 not determined missing Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 64.1x 99.91 100 0 99.99 0.43 GCF_000145415.1 ADXV01 2539 2614 2614 24 3 47 1 Cutibacterium_modestum_homd_HMT_193 GCA_000145595.1 HMT-550 JKD6008 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus JKD6008 1 2924344 32.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/145/595/GCA_000145595.1_ASM14559v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA29567 546342 SAMN02603619 ASM14559v1 Complete Genome 2014-01-30T14:21:42.810 Monash University 99.48 99.51 0.08 100 0.2 GCF_000145595.1 2726 2949 2949 121 16 85 1 Staphylococcus_aureus_homd_HMT_550 GCA_000146265.4 HMT-531 D11S-1 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans D11S-1 4 2160722 44.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/146/265/GCA_000146265.4_ASM14626v4 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA40107 668336 SAMN02604243 ASM14626v4 Complete Genome Velvet v. 1.2.09 2014-01-30T15:13:20.340 454; Illumina MiSeq Bumgarner Laboratory Department of Microbiology University of Washington 40.2x 99.86 GCF_000146265.3 2140 2274 2274 59 19 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_000146365.1 HMT-136 67H29BP Named NVP** Cultivated Oral (Abundance: Medium) HMT-136 Selenomonas felix 67H29BP 16 2471116 57.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/146/365/GCA_000146365.1_ASM14636v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda felix PRJNA50535 864563 SAMN02299442 ASM14636v1 Scaffold Newbler Assembler v. 2.3-10192009 2013-08-02T12:07:40.967 not determined missing 454 Baylor College of Medicine 64.6x 99.65 0.05 99.99 0.53 GCF_000146365.1 AEEJ01 2304 2389 2389 20 5 59 1 Selenomonas_felix_homd_HMT_136 GCA_000146485.1 HMT-019 ATCC 49726 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens ATCC 49726 35 2465636 61.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/146/485/GCA_000146485.1_ASM14648v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA50523 862512 SAMN00139429 ASM14648v1 Scaffold Newbler Assembler v. 2.0-01162009 2010-12-03T12:49:02.457 not determined missing 454 Baylor College of Medicine 13.3x 96.82 96.8 0.22 99.93 0.14 GCF_000146485.1 AEED01 2316 2380 2380 7 4 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_000146675.1 HMT-665 DSM 16973 Named Cultivated Oral (Abundance: Scarce) HMT-665 Hoylesella marshii DSM 16973 11 2559358 48.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/146/675/GCA_000146675.1_ASM14667v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella marshii PRJNA50531 862515 SAMN00117235 ASM14667v1 Scaffold Newbler Assembler v. 2.3-042010 2010-11-03T12:56:04.370 not determined missing 454 Baylor College of Medicine 33.8x 99.97 99.66 0.84 99.92 0.19 GCF_000146675.1 AEEI01 2171 2261 2261 40 3 46 1 Hoylesella_marshii_homd_HMT_665 GCA_000146755.1 HMT-071 73H25AP Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 73H25AP 7 1976523 41.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/146/755/GCA_000146755.1_ASM14675v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_T PRJNA50521 864570 SAMN00260141 ASM14675v1 Scaffold Newbler Assembler v. v2.3-10192009 2011-04-21T14:03:13.760 not determined missing 454 Baylor College of Medicine 68.3x 99.37 0.2 99.94 0.1 GCF_000146755.1 AEEP01 1867 1979 1979 66 3 42 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000146755.1 HMT-071 73H25AP Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 73H25AP 7 1976523 41.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/146/755/GCA_000146755.1_ASM14675v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_T PRJNA50521 864570 SAMN00260141 ASM14675v1 Scaffold Newbler Assembler v. v2.3-10192009 2011-04-21T14:03:13.760 not determined missing 454 Baylor College of Medicine 68.3x 99.37 0.2 99.94 0.1 GCF_000146755.1 AEEP01 1867 1979 1979 66 3 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_000146855.1 HMT-796 ATCC 43715 Named Cultivated Oral (Abundance: No Data) HMT-841 Megasphaera lornae ATCC 43715 14 2511030 33.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/146/855/GCA_000146855.1_ASM14685v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter;s__Peptoanaerobacter margaretiae PRJNA50511 864565 SAMN00120458 ASM14685v1 Scaffold Newbler Assembler v. 2.3-10192009 2010-11-18T16:16:02.180 not determined missing 454 Baylor College of Medicine 41.0x 99.3 0 99.49 0.09 GCF_000146855.1 AEES01 2089 0 0 22 4 42 1 Peptoanaerobacter_margaretiae_homd_HMT_796 GCA_000146975.1 HMT-734 AP200 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae AP200 1 2130580 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/146/975/GCA_000146975.1_ASM14697v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA32641 574093 SAMN02603428 ASM14697v1 Complete Genome 2014-01-30T14:21:29.233 Italy cerebrospinal fluid of a patient with meningitis Istituto di Teconologie Biomediche, Consiglio Nazionale delle Ricerche 98.76 99.54 0.26 100 0.21 GCF_000146975.1 2116 2253 2253 68 12 56 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000147095.1 HMT-734 670-6B Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 670-6B 1 2240045 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/147/095/GCA_000147095.1_ASM14709v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA292 189423 SAMN02604004 ASM14709v1 Complete Genome 2014-01-30T14:54:14.780 Spain TIGR 98.71 99.18 0.29 100 0.91 GCF_000147095.1 2282 2434 2434 80 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000147675.2 HMT-112 DSM 17678 Named Cultivated Oral (Abundance: Medium) HMT-112 Peptostreptococcus stomatis DSM 17678 74 1988044 36.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/147/675/GCA_000147675.2_ASM14767v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus stomatis PRJNA34073 596315 SAMN00008344 ASM14767v1 Contig Newbler Assembler v. 2.0.00.20 2010-01-28T11:06:14.830 not determined missing 454 J. Craig Venter Institute 114.5x GCF_000147675.1 ADGQ01 1799 1890 1890 35 4 51 1 Peptostreptococcus_stomatis_homd_HMT_112 GCA_000148485.2 HMT-830 FB024-16 Named Cultivated Vaginal (Abundance: Scarce) HMT-830 Mobiluncus mulieris FB024-16 46 2384880 55.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/148/485/GCA_000148485.2_ASM14848v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus mulieris PRJNA51063 866770 SAMN00100748 ASM14848v1 Contig Newbler v. 2.3 2010-08-10T16:49:10.610 not determined missing 454 J. Craig Venter Institute 28.0x 98.93 GCF_000148485.1 AEGV01 2080 2137 2137 6 4 45 2 Mobiluncus_mulieris_homd_HMT_830 GCA_000148525.2 HMT-677 SK564 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK564 35 2026898 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/148/525/GCA_000148525.2_ASM14852v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_H PRJNA33355 585203 SAMN00001434 ASM14852v1 Contig Newbler v. 1.1.03.24 2008-12-23T09:23:55.870 mouth 454 FLX University of Maryland Institute for Genome Sciences 29.0x 93.58 GCF_000148525.1 AEDU01 1926 2003 2003 44 0 32 1 Streptococcus_mitis_homd_HMT_677 GCA_000148565.2 HMT-707 ATCC 35037 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis ATCC 35037 25 1884712 41.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/148/565/GCA_000148565.2_ASM14856v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA50777 655813 SAMN02435816 ASM14856v1 Contig Newbler v. 2.0.00.20 2013-12-04T13:10:28.670 454 Titanium University of Maryland 195.0x 99.98 GCF_000148565.1 AEDW01 1834 1906 1906 38 0 33 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_000148565.2 HMT-707 ATCC 35037 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis ATCC 35037 25 1884712 41.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/148/565/GCA_000148565.2_ASM14856v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA50777 655813 SAMN02435816 ASM14856v1 Contig Newbler v. 2.0.00.20 2013-12-04T13:10:28.670 454 Titanium University of Maryland 195.0x 99.98 GCF_000148565.1 AEDW01 1834 1906 1906 38 0 33 1 Streptococcus_oralis_HMT_071_398_707 GCA_000148585.3 HMT-677 NCTC 12261 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis NCTC 12261 1 1868883 40.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/148/585/GCA_000148585.3_ASM14858v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA173 246201 SAMN02435817 ASM14858v3 Complete Genome Celera Assembler v. 7.0 SVN 2013-12-04T13:10:28.780 PacBio RS-II TIGR 25.0x 99.99 GCF_000148585.2 1735 1857 1857 48 12 61 1 Streptococcus_mitis_homd_HMT_677 GCA_000148625.1 HMT-607 JER Named Cultivated Oral (Abundance: Scarce) HMT-607 Mycoplasmopsis fermentans JER 1 977524 26.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/148/625/GCA_000148625.1_ASM14862v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis;s__Mycoplasmopsis fermentans PRJNA36551 637387 SAMN02603257 ASM14862v1 Complete Genome 2014-01-30T11:19:44.700 Georg-August-University Goettingen 99.48 100 0 99.49 1.59 GCF_000148625.1 1668 1715 1715 5 5 36 1 Mycoplasmopsis_fermentans_homd_HMT_607 GCA_000153625.1 HMT-202 ATCC 10953 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum ATCC 10953 2 2441632 26.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/153/625/GCA_000153625.1_ASM15362v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA17261 393480 SAMN02469324 ASM15362v1 Chromosome 2013-12-19T13:00:58.150 Baylor College of Medicine 99.98 GCF_000153625.3 AARG01 2333 2406 2406 24 3 45 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_000153685.2 HMT-822 Haarlem Named Cultivated Pathogen (Abundance: Scarce) HMT-822 Mycobacterium tuberculosis Haarlem 1 4408224 65.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/153/685/GCA_000153685.2_ASM15368v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium tuberculosis PRJNA17353 395095 SAMN03081423 ASM15368v2 Complete Genome 2014-09-26T10:50:18.403 Broad Institute 99.93 99.94 0 100 0.76 GCF_000153685.2 4048 4105 0 0 3 53 1 Mycobacterium_tuberculosis_homd_HMT_822 GCA_000154225.1 HMT-710 ATCC 17982 Named NVP Cultivated Oral (Abundance: Medium) HMT-710 Schaalia dentiphila ATCC 17982 2 2393958 65.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/154/225/GCA_000154225.1_ASM15422v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia dentiphila PRJNA18171 411466 SAMN00627054 ASM15422v1 Scaffold 2011-06-14T07:46:06.910 not determined missing Washington University Genome Sequencing Center 99.99 100 0.47 100 0.18 GCF_000154225.1 AAYI02 2019 2086 2086 9 8 49 1 Schaalia_dentiphila_homd_HMT_710 GCA_000154385.1 HMT-961 M21/2 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-961 Faecalibacterium prausnitzii M21/2 25 3127383 56.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/154/385/GCA_000154385.1_ASM15438v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii PRJNA18203 411485 SAMN02299416 ASM15438v1 Scaffold 2013-08-02T12:07:38.783 not determined missing Washington University Genome Sequencing Center 96.82 100 0 99.74 0.36 GCF_000154385.1 ABED02 2887 3009 3009 38 17 66 1 Faecalibacterium_prausnitzii_homd_HMT_961 GCA_000154405.1 HMT-111 ATCC 33270 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra ATCC 33270 16 1703872 28.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/154/405/GCA_000154405.1_ASM15440v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA18169 411465 SAMN00627099 ASM15440v1 Scaffold 2011-06-14T07:46:07.147 not determined missing Washington University Genome Sequencing Center 99.99 98.48 1.02 99.51 2.71 GCF_000154405.1 ABEE02 1590 1667 1667 33 4 39 1 Parvimonas_micra_homd_HMT_111 GCA_000154465.1 HMT-965 DSM 17216 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-965 Alistipes putredinis DSM 17216 12 2550678 53.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/154/465/GCA_000154465.1_ASM15446v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis PRJNA19655 445970 SAMN00000002 ASM15446v1 Scaffold 2008-04-04T08:44:24.950 not determined missing Washington University Genome Sequencing Center 99.52 0.96 99.99 0.94 GCF_000154465.1 ABFK02 2345 2420 2420 19 7 48 1 Alistipes_putredinis_homd_HMT_965 GCA_000154525.1 HMT-969 ATCC 43183 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-969 Bacteroides stercoris ATCC 43183 17 4009829 45.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/154/525/GCA_000154525.1_ASM15452v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris PRJNA19859 449673 SAMN00000004 ASM15452v1 Scaffold 2011-02-24T14:14:08.053 not determined missing Washington University Genome Sequencing Center 99.98 99.26 0.19 99.96 0.15 GCF_000154525.1 ABFZ02 3396 3489 3489 22 14 56 1 Bacteroides_stercoris_homd_HMT_969 GCA_000155915.2 HMT-839 1153 Named Cultivated Vaginal (Abundance: High) HMT-839 Lactobacillus jensenii 1153 1 1746219 34.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/155/915/GCA_000155915.2_Lacto_jensenii_1153_V2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus jensenii PRJNA31205 440497 SAMN02463685 Lacto_jensenii_1153_V2 Scaffold HybridAssembler v. 2009 2013-12-18T11:11:26.153 not determined missing 454 Broad Institute 54.6x 99.86 97.62 0.86 92.48 0.28 GCF_000155915.2 ABWG02 1893 1973 1973 19 7 53 1 Lactobacillus_jensenii_homd_HMT_839 GCA_000155955.1 HMT-684 DSM 20544 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-684 Mitsuokella multacida DSM 20544 6 2577056 58.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/155/955/GCA_000155955.1_ASM15595v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;s__Mitsuokella multacida PRJNA28653 500635 SAMN00000736 ASM15595v1 Scaffold 2008-10-08T13:29:02.643 not determined missing Washington University Genome Sequencing Center 100 0.31 100 0.02 GCF_000155955.1 ABWK02 2296 2469 2469 79 17 76 1 Mitsuokella_multacida_homd_HMT_684 GCA_000156575.1 HMT-859 ATCC 51172 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-859 Anaerococcus lactolyticus ATCC 51172 251 2206675 35.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/156/575/GCA_000156575.1_ASM15657v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus lactolyticus PRJNA30951 525254 SAMN00000626 ASM15657v1 Scaffold 2008-09-10T16:48:43.640 not determined missing Baylor College of Medicine 98.48 0.61 99.72 0.36 GCF_000156575.1 ABYO01 2020 2104 2104 35 4 44 1 Anaerococcus_lactolyticus_homd_HMT_859 GCA_000156615.2 HMT-077 ATCC 33035 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum ATCC 33035 9 2601426 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/156/615/GCA_000156615.2_ASM15661v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum PRJNA30955 525264 SAMN00000628 ASM15661v2 Scaffold Newbler Assembler v. 2.3.10192009 2008-09-10T16:49:24.237 not determined missing 454 Baylor College of Medicine 64.7x 87.51 99.16 0 99.96 0.28 GCF_000156615.2 ABYQ02 2447 2518 2518 8 11 51 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_000157355.2 HMT-801 EC20 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-801 Enterococcus casseliflavus EC20 1 3427276 42.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/157/355/GCA_000157355.2_ASM15735v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D;s__Enterococcus_D casseliflavus PRJNA32935 565655 SAMN02596921 ASM15735v2 Complete Genome Newbler v. 2.1-PreRelease-4/28/2009 2014-01-27T09:48:58.493 454 Broad Institute 16.5x 98.5 99.25 0.38 99.98 0.42 GCF_000157355.2 3114 3241 3241 51 15 60 1 Enterococcus_casseliflavus_homd_HMT_801 GCA_000158015.1 HMT-889 DSM 20213 Named Cultivated Vaginal (Abundance: Medium) HMT-889 Bifidobacterium breve DSM 20213 103 2331386 58.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/158/015/GCA_000158015.1_ASM15801v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium breve PRJNA29259 518634 SAMN00008778 ASM15801v1 Scaffold 2010-02-19T17:31:07.240 not determined missing Washington University Genome Sequencing Center 99.99 100 0 99.96 0.1 GCF_000158015.1 ACCG02 1953 2023 2023 12 3 54 1 Bifidobacterium_breve_homd_HMT_889 GCA_000158215.3 HMT-201 2_1_31 Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum 2_1_31 6 2546312 30.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/158/215/GCA_000158215.3_Fuso_sp_2_1_31_V3 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium periodonticum_D PRJNA32473 469599 SAMN02463707 Fuso_sp_2_1_31_V3 Scaffold allpaths v. R40582 2013-12-18T11:11:28.960 not determined missing Illumina Broad Institute 240.0x 92.98 100 0.56 100 0.01 GCF_000158215.3 ACDC03 2339 2422 2422 21 11 50 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_000158235.1 HMT-860 3_1_5R Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-860 Fusobacterium gonidiaformans 3_1_5R 28 1930430 35.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/158/235/GCA_000158235.1_ASM15823v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C gonidiaformans PRJNA32477 469605 SAMN02463709 ASM15823v1 Scaffold 2013-12-18T11:11:29.257 not determined missing 454 Broad Institute 37.3x 98.74 100 0 99.92 0.35 GCF_000158235.1 ACDD01 1881 1942 1942 13 2 45 1 Fusobacterium_gonidiaformans_homd_HMT_860 GCA_000158255.2 HMT-200 4_1_13 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii 4_1_13 7 2271126 27.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/158/255/GCA_000158255.2_Fuso_sp_4_1_13_V2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA32479 469606 SAMN02463710 Fuso_sp_4_1_13_V2 Scaffold Newbler v. 2.0.0-PreRelease-04/10/2008 2013-12-18T11:11:29.416 not determined missing 454 Broad Institute 40.0x 97.52 100 0 100 0.32 GCF_000158255.2 ACDE02 2156 2233 2233 20 11 45 1 Fusobacterium_vincentii_homd_HMT_200 GCA_000158275.2 HMT-420 7_1 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis 7_1 2 2514029 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/158/275/GCA_000158275.2_ASM15827v2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA32483 457405 SAMN02463711 ASM15827v2 Complete Genome Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:29.570 not determined 454 Broad Institute 29.0x 96.78 100 0 100 0.56 GCF_000158275.2 2428 2509 2509 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_000158295.2 HMT-690 D12 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum D12 17 1960925 35.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/158/295/GCA_000158295.2_Fuso_sp_D12_V2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA32485 556263 SAMN02463712 Fuso_sp_D12_V2 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:29.750 not determined missing 454 Broad Institute 15.0x 98.62 92.7 0 93.54 0.54 GCF_000158295.2 ACDG02 1919 1991 1991 17 6 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_000158535.2 HMT-420 D11 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis D11 17 2363537 27.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/158/535/GCA_000158535.2_Fuso_nucl_D11_V2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA32501 556264 SAMN02463718 Fuso_nucl_D11_V2 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:30.626 not determined missing 454 Broad Institute 17.2x 96.98 96.59 0 97.98 0.08 GCF_000158535.2 ACDS02 2348 2418 2418 20 4 45 1 Fusobacterium_animalis_homd_HMT_420 GCA_000158615.1 HMT-577 ATCC 23834 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens ATCC 23834 12 2171245 56.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/158/615/GCA_000158615.1_ASM15861v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA30493 546274 SAMN00008822 ASM15861v1 Scaffold 2010-02-19T19:36:07.997 not determined missing Washington University Genome Sequencing Center 99.99 95.96 0.56 99.99 0.17 GCF_000158615.1 ACEA01 2046 2107 2107 10 3 47 1 Eikenella_corrodens_homd_HMT_577 GCA_000158635.1 HMT-666 ATCC 33806 Named Cultivated Oral (Abundance: High) HMT-666 Corynebacterium matruchotii ATCC 33806 10 2992255 57.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/158/635/GCA_000158635.1_ASM15863v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium matruchotii PRJNA30771 566549 SAMN00008817 ASM15863v1 Scaffold 2010-02-19T19:19:02.473 not determined missing Washington University Genome Sequencing Center 97.53 99.89 0 100 0.16 GCF_000158635.1 ACEB01 2699 2759 2759 8 2 49 1 Corynebacterium_matruchotii_homd_HMT_666 GCA_000158835.2 HMT-860 ATCC 25563 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-860 Fusobacterium gonidiaformans ATCC 25563 6 1698329 32.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/158/835/GCA_000158835.2_Fuso_gon_ATCC25563_V2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C gonidiaformans PRJNA32419 469615 SAMN02463686 Fuso_gon_ATCC25563_V2 Scaffold Newbler v. 2.0.0-PreRelease-04/10/2008 2013-12-18T11:11:26.303 not determined missing 454 Broad Institute 35.0x 99.99 100 0 99.94 0.1 GCF_000158835.2 ACET02 1656 1721 1721 16 2 46 1 Fusobacterium_gonidiaformans_homd_HMT_860 GCA_000159095.1 HMT-788 ATCC 35098 Named Cultivated Vaginal (Abundance: Scarce) HMT-788 Anaerococcus tetradius ATCC 35098 100 2145347 35.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/095/GCA_000159095.1_ASM15909v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus tetradius PRJNA31433 525255 SAMN00001448 ASM15909v1 Scaffold 2009-01-05T12:52:02.726 not determined missing Baylor College of Medicine 100 0 97.95 0.23 GCF_000159095.1 ACGC01 1960 2052 2052 38 7 47 0 Anaerococcus_tetradius_homd_HMT_788 GCA_000159115.1 HMT-019 ATCC 49725 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens ATCC 49725 38 2437186 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/115/GCA_000159115.1_ASM15911v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA31443 525260 SAMN00002226 ASM15911v1 Scaffold 2009-04-14T12:43:05.786 not determined missing Baylor College of Medicine 99.99 99.78 0 100 0.02 GCF_000159115.1 ACGD01 2226 2288 2288 7 3 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_000159135.1 HMT-072 ATCC 6940 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum ATCC 6940 85 2828991 60.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/135/GCA_000159135.1_ASM15913v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA31449 525268 SAMN00001507 ASM15913v1 Scaffold 2009-01-16T17:39:02.413 not determined missing Baylor College of Medicine 99.99 98.99 0.22 99.98 0.14 GCF_000159135.1 ACGE01 2568 2630 2630 8 3 50 1 Corynebacterium_striatum_homd_HMT_072 GCA_000159215.1 HMT-608 ATCC 14931 Named Cultivated Oral (Abundance: Scarce) HMT-608 Limosilactobacillus fermentum ATCC 14931 74 1867005 54.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/215/GCA_000159215.1_ASM15921v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus fermentum PRJNA31485 525325 SAMN00001473 ASM15921v1 Scaffold 2009-01-08T15:51:02.376 not determined missing Baylor College of Medicine 99.99 98.63 0 99.87 0.06 GCF_000159215.1 ACGI01 1750 1836 1836 25 3 57 1 Limosilactobacillus_fermentum_homd_HMT_608 GCA_000159235.2 HMT-814 DSM 15829 Named Cultivated Vaginal (Abundance: High) HMT-814 Fannyhessea vaginae DSM 15829 6 1430526 42.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/235/GCA_000159235.2_ASM15923v2 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Fannyhessea;s__Fannyhessea vaginae PRJNA31435 525256 SAMN00001474 ASM15923v2 Contig Newbler Assembler v. 2.3.10192009 2009-01-08T15:52:03.486 not determined vagina 454 Baylor College of Medecine 35.4x 99.99 100 0 99.23 0.27 GCF_000159235.2 ACGK02 1164 1222 1222 8 4 45 1 Fannyhessea_vaginae_homd_HMT_814 GCA_000159355.1 HMT-819 ATCC 33200 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-819 Lactobacillus johnsonii ATCC 33200 32 1780499 34.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/355/GCA_000159355.1_ASM15935v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii PRJNA31495 525330 SAMN00001472 ASM15935v1 Scaffold 2009-01-08T15:50:08.830 not determined missing BCM 99.98 99.14 0.19 99.99 0.08 GCF_000159355.1 ACGR01 1763 1850 1850 31 3 52 1 Lactobacillus_johnsonii_homd_HMT_819 GCA_000159395.1 HMT-756 ATCC 11741 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-756 Ligilactobacillus salivarius ATCC 11741 32 2017251 33.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/395/GCA_000159395.1_ASM15939v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius PRJNA31503 1423799 SAMN00001483 ASM15939v1 Scaffold 2009-01-09T11:56:03.906 not determined missing Baylor College of Medicine 99.98 99.48 0 99.99 0.08 GCF_000159395.1 ACGT01 1929 2036 2036 39 4 63 1 Ligilactobacillus_salivarius_homd_HMT_756 GCA_000159415.1 HMT-461 DSM 16047 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-461 Lactobacillus ultunensis DSM 16047 48 2248406 38.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/415/GCA_000159415.1_ASM15941v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus ultunensis PRJNA31505 525365 SAMN00001484 ASM15941v1 Scaffold 2009-01-09T12:39:02.370 not determined missing BCM 99.97 98.9 0 99.94 0.1 GCF_000159415.1 ACGU01 2117 2215 2215 37 3 57 1 Lactobacillus_ultunensis_homd_HMT_461 GCA_000159435.1 HMT-051 ATCC 49540 Named Cultivated Vaginal (Abundance: Low) HMT-051 Limosilactobacillus vaginalis ATCC 49540 112 1877332 42.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/435/GCA_000159435.1_ASM15943v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus vaginalis PRJNA31507 1423814 SAMN00001485 ASM15943v1 Scaffold 2009-01-09T13:22:01.746 not determined missing BCM 99.95 98.64 1.9 99.61 0.2 GCF_000159435.1 ACGV01 1728 1831 1831 41 3 58 1 Limosilactobacillus_vaginalis_homd_HMT_051 GCA_000159495.1 HMT-716 ATCC 25302 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-716 Lacticaseibacillus paracasei ATCC 25302 73 2991737 48.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/495/GCA_000159495.1_ASM15949v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei PRJNA31513 525337 SAMN00001470 ASM15949v1 Scaffold 2009-01-08T15:49:02.676 not determined missing Baylor College of Medicine 99.99 99.31 0 99.98 0.23 GCF_000159495.1 ACGY01 2804 2896 2896 32 4 55 1 Lacticaseibacillus_paracasei_homd_HMT_716 GCA_000159535.2 HMT-550 TCH60 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus TCH60 2 2827166 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/535/GCA_000159535.2_ASM15953v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA31539 548473 SAMN00002240 ASM15953v2 Complete Genome Newbler Assembler v. 2.3.10192009 2009-04-17T09:55:02.083 not determined 454 Baylor College of Medicine 32.0x 97.87 99.51 0.25 100 0.18 GCF_000159535.2 2614 2813 2813 118 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000159695.1 HMT-662 ATCC 53516 Named Cultivated Nasal (Abundance: Medium) HMT-662 Finegoldia magna ATCC 53516 1 1916301 32.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/695/GCA_000159695.1_ASM15969v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia;s__Finegoldia magna_F PRJNA31469 525282 SAMN00001509 ASM15969v1 Chromosome Newbler Assembler v. 2.0.02232009 2009-01-20T17:02:01.810 not determined missing 454 Baylor College of Medicine 54.0x 94.34 99.39 0 99.96 0.17 GCF_000159695.1 ACHM02 1816 1897 1897 26 8 46 1 Finegoldia_magna_homd_HMT_662 GCA_000159955.1 HMT-786 D14 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-786 Paenibacillus phoenicis D14 75 5097411 54.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/955/GCA_000159955.1_ASM15995v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Fontibacillus;s__Fontibacillus phoenicis PRJNA34703 621372 SAMN02463722 ASM15995v1 Scaffold 2013-12-18T11:11:31.377 not determined missing Broad Institute 95.47 0 99.87 0.25 GCF_000159955.1 ACIH01 4551 4683 4683 59 2 70 1 Paenibacillus_phoenicis_homd_HMT_786 GCA_000159995.1 HMT-466 ATCC 51259 Named Cultivated Oral (Abundance: Medium) HMT-466 Alloprevotella tannerae ATCC 51259 6 2585719 46.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/159/995/GCA_000159995.1_ASM15999v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella tannerae PRJNA33153 626522 SAMN00008849 ASM15999v1 Scaffold 2010-02-19T21:10:08.700 not determined missing Washington University Genome Sequencing Center 98.5 0 99.98 0.09 GCF_000159995.1 ACIJ02 2158 2218 2218 4 7 48 1 Alloprevotella_tannerae_homd_HMT_466 GCA_000160015.1 HMT-160 ATCC 17748 Named Cultivated Oral (Abundance: High) HMT-160 Veillonella dispar ATCC 17748 3 2118767 38.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/015/GCA_000160015.1_ASM16001v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella dispar PRJNA30491 546273 SAMN00008863 ASM16001v1 Scaffold 2010-02-19T22:00:07.500 not determined missing Washington University Genome Sequencing Center 99.99 100 0 99.98 0.06 GCF_000160015.1 ACIK02 1933 2017 2017 17 17 49 1 Veillonella_dispar_homd_HMT_160 GCA_000160035.2 HMT-165 ATCC 51271 Named Cultivated Oral (Abundance: Medium) HMT-165 Catonella morbi ATCC 51271 8 3479204 37.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/035/GCA_000160035.2_ASM16003v2 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Catonella;s__Catonella morbi PRJNA33121 592026 SAMN02436865 ASM16003v2 Scaffold Newbler v. 2.0.0-PostRelease-1/21/2009 2013-12-04T15:03:57.196 gingival crevice 454 Washington University Genome Sequencing Center 21.4x 99.55 1.34 96.86 0.54 GCF_000160035.2 ACIL03 3087 3191 3191 55 5 43 1 GCA_000160055.1 HMT-118 DSM 15470 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus DSM 15470 1 1895960 45.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/055/GCA_000160055.1_ASM16005v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA33143 592028 SAMN00008820 ASM16005v1 Scaffold 2010-02-19T19:31:09.090 not determined missing Washington University Genome Sequencing Center 98.1 0.95 99.99 0.38 GCF_000160055.1 ACIM02 1756 1857 1857 39 10 51 1 Dialister_invisus_homd_HMT_118 GCA_000160075.2 HMT-389 ATCC 49176 Named Cultivated Oral (Abundance: High) HMT-389 Abiotrophia defectiva ATCC 49176 4 2043439 47.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/075/GCA_000160075.2_ASM16007v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;s__Abiotrophia defectiva PRJNA33011 592010 SAMN02436801 ASM16007v2 Scaffold Newbler v. 2.0.0-PostRelease-1/21/2009 2013-12-04T15:03:53.573 blood 454 Washington University Genome Sequencing Center 34.5x 99.99 98.46 0 99.02 0.06 GCF_000160075.2 ACIN03 1843 1920 1920 21 8 47 1 Abiotrophia_defectiva_homd_HMT_389 GCA_000160115.1 HMT-095 DSM 14600 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-095 Shuttleworthia satelles DSM 14600 5 2169477 51.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/115/GCA_000160115.1_ASM16011v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Shuttleworthia;s__Shuttleworthia satelles PRJNA33169 626523 SAMN00008860 ASM16011v1 Scaffold 2010-02-19T21:52:09.450 not determined missing Washington University Genome Sequencing Center 98.84 0.5 97.39 0.69 GCF_000160115.1 ACIP02 1899 1975 1975 19 5 51 1 Shuttleworthia_satelles_homd_HMT_095 GCA_000160135.1 HMT-078 F0262 Unnamed Cultivated Oral (Abundance: Medium) HMT-078 Oribacterium sp. HMT-078 F0262 12 2676554 54.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/135/GCA_000160135.1_ASM16013v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium sp000160135 PRJNA33167 608534 SAMN00008845 ASM16013v1 Scaffold 2010-02-19T21:00:08.590 not determined missing Washington University Genome Sequencing Center 98.09 0 97.36 0.25 GCF_000160135.1 ACIQ02 2331 2455 2455 68 6 49 1 Oribacterium_sp_HMT_078_homd_HMT_078 GCA_000160195.1 HMT-550 MN8 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus MN8 1 2899588 33.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/195/GCA_000160195.1_ASM16019v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA31533 548470 SAMN00001499 ASM16019v1 Chromosome Newbler Assembler v. 1.1.03.24 2009-01-15T13:20:02.263 not determined missing 454 BCM 36.0x 97.86 99.51 0.22 100 0.46 GCF_000160195.1 ACJA02 2740 2932 2932 124 10 57 1 Staphylococcus_aureus_homd_HMT_550 GCA_000160215.1 HMT-567 M23864:W1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae M23864 26 2629570 33.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/215/GCA_000160215.1_ASM16021v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA34647 525378 SAMN00002222 ASM16021v1 Scaffold 2009-04-11T03:40:02.247 not determined missing Baylor College of Medicine 98.66 99.9 0 99.98 0.54 GCF_000160215.1 ACJB01 2502 2609 2609 53 4 49 1 Staphylococcus_caprae_homd_HMT_567 GCA_000160335.2 HMT-550 55/2053 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 55/2053 2 2777368 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/335/GCA_000160335.2_ASM16033v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA34891 585143 SAMN00103091 ASM16033v2 Complete Genome 2011-03-23T15:01:05.227 missing missing Broad Institute 97.84 98.38 0.25 99.97 0.27 GCF_000160335.2 2582 2764 2764 116 12 53 1 Staphylococcus_aureus_homd_HMT_550 GCA_000160435.1 HMT-706 ATCC 51147 Named Cultivated Oral (Abundance: High) HMT-706 Kingella oralis ATCC 51147 5 2406675 54.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/435/GCA_000160435.1_ASM16043v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_B;s__Kingella_B oralis PRJNA33145 629741 SAMN00008832 ASM16043v1 Scaffold 2010-02-19T20:20:03.117 not determined missing WUGSC 99.99 97.81 0.23 99.99 0.07 GCF_000160435.1 ACJW02 2343 2406 2406 8 5 49 1 Kingella_oralis_homd_HMT_706 GCA_000160475.1 HMT-201 ATCC 33693 Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum ATCC 33693 53 2615003 28.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/475/GCA_000160475.1_ASM16047v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium periodonticum PRJNA30495 546275 SAMN00008828 ASM16047v1 Scaffold 2010-02-19T20:10:02.523 not determined missing Washington University Genome Sequencing Center 100 0 100 1.75 GCF_000160475.1 ACJY01 2453 2528 2528 21 8 45 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_000160495.1 HMT-151 ATCC 35185 Named Cultivated Oral (Abundance: Medium) HMT-151 Selenomonas sputigena ATCC 35185 6 2559453 57.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/495/GCA_000160495.1_ASM16049v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas;s__Selenomonas sputigena PRJNA30489 546271 SAMN00008859 ASM16049v1 Scaffold 2010-02-19T21:49:10.993 not determined missing Washington University Genome Sequencing Center 99.99 100 0.63 99.98 0.09 GCF_000160495.1 ACKP02 2269 2359 2359 29 7 53 1 Selenomonas_sputigena_homd_HMT_151 GCA_000160555.1 HMT-130 ATCC 43541 Named Cultivated Oral (Abundance: Medium) HMT-130 Selenomonas noxia ATCC 43541 21 2054993 56.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/555/GCA_000160555.1_ASM16055v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda noxia PRJNA34641 585503 SAMN00138948 ASM16055v1 Scaffold 2010-11-30T13:02:01.630 not determined missing Baylor College of Medicine 99.65 0 99.98 0.3 GCF_000160555.1 ACKT01 1948 2026 2026 17 4 56 1 Selenomonas_noxia_homd_HMT_130 GCA_000160615.1 HMT-830 ATCC 35243 Named Cultivated Vaginal (Abundance: Scarce) HMT-830 Mobiluncus mulieris ATCC 35243 15 2435166 55.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/615/GCA_000160615.1_ASM16061v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus mulieris PRJNA34633 585199 SAMN00139192 ASM16061v1 Scaffold 2010-12-01T22:14:02.230 not determined missing Baylor College of Medicine 99.99 99.05 1.42 99.82 1.71 GCF_000160615.1 ACKW01 2088 2144 2144 6 3 45 2 Mobiluncus_mulieris_homd_HMT_830 GCA_000160635.1 HMT-457 F0268 Named Cultivated Oral (Abundance: High) HMT-457 Oribacterium sinus F0268 43 2706954 44.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/635/GCA_000160635.1_ASM16063v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium sinus PRJNA34635 585501 SAMN00002241 ASM16063v1 Scaffold 2009-04-17T10:38:02.500 not determined missing Baylor College of Medicine 95.47 92.18 0 95.7 0.47 GCF_000160635.1 ACKX01 2264 2326 2326 18 2 41 1 Oribacterium_sinus_homd_HMT_457 GCA_000160655.1 HMT-633 ATCC 15826 Named Cultivated Oral (Abundance: High) HMT-633 Cardiobacterium hominis ATCC 15826 26 2642494 60.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/655/GCA_000160655.1_ASM16065v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium hominis PRJNA37269 638300 SAMN00120585 ASM16065v1 Scaffold 2010-11-19T14:41:02.343 not determined missing Baylor College of Medicine 99.98 97.57 0 91.36 0.32 GCF_000160655.1 ACKY01 2392 2460 2460 14 3 50 1 Cardiobacterium_hominis_homd_HMT_633 GCA_000160675.1 HMT-534 ATCC 49175 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens ATCC 49175 10 1947166 38.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/675/GCA_000160675.1_ASM16067v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJNA37271 638301 SAMN00139322 ASM16067v1 Scaffold 2010-12-02T23:07:02.370 not determined missing Baylor College of Medicine 99.99 99.45 0.18 99.35 0.04 GCF_000160675.1 ACKZ01 1846 1903 1903 29 3 24 1 Granulicatella_adiacens_homd_HMT_534 GCA_000160695.1 HMT-125 ATCC 43531 Named Cultivated Oral (Abundance: Low) HMT-125 Selenomonas flueggei ATCC 43531 9 2166063 56.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/695/GCA_000160695.1_ASM16069v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda flueggei PRJNA37273 638302 SAMN00189217 ASM16069v1 Scaffold 2010-12-23T17:50:03.610 not determined missing Baylor College of Medicine 98.89 0.05 99.7 0.21 GCF_000160695.1 ACLA01 2041 2116 2116 15 3 56 1 Selenomonas_flueggei_homd_HMT_125 GCA_000160755.1 HMT-676 ATCC 29906 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-676 Proteus mirabilis ATCC 29906 54 4027100 39.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/755/GCA_000160755.1_ASM16075v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus;s__Proteus mirabilis PRJNA31523 525369 SAMN00001486 ASM16075v1 Scaffold 2009-01-09T14:02:02.626 not determined missing BCM 99.86 100 0 100 1.41 GCF_000160755.1 ACLE01 3600 3738 3738 63 4 70 1 Proteus_mirabilis_homd_HMT_676 GCA_000160875.1 HMT-838 DSM 13335 Named Cultivated Vaginal (Abundance: High) HMT-838 Lactobacillus iners DSM 13335 12 1277649 32.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/875/GCA_000160875.1_ASM16087v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners PRJNA31491 525328 SAMN00139432 ASM16087v1 Scaffold 2010-12-03T14:10:01.883 not determined missing BCM 99.98 99.41 0.44 99.87 0.09 GCF_000160875.1 ACLN01 1191 1264 1264 23 3 46 1 Lactobacillus_iners_homd_HMT_838 GCA_000161935.1 HMT-816 101-4-CHN Named Cultivated Vaginal (Abundance: Low) HMT-816 Limosilactobacillus coleohominis 101-4-CHN 12 1725829 42.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/161/935/GCA_000161935.1_ASM16193v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus coleohominis_A PRJNA37949 575594 SAMN02463725 ASM16193v1 Scaffold 2013-12-18T11:11:31.853 not determined missing Broad Institute 95.95 100 0 99.97 0.67 GCF_000161935.1 ACOH01 1709 1796 1796 25 3 58 1 Limosilactobacillus_coleohominis_homd_HMT_816 GCA_000161955.2 HMT-622 2_1_36FAA Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii 2_1_36FAA 5 2231411 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/161/955/GCA_000161955.2_Strept_sp_2_1_36FAA_V2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA37947 469609 SAMN02463724 Strept_sp_2_1_36FAA_V2 Scaffold Newbler v. 2.0.0-PostRelease-1/21/2009 2013-12-18T11:11:31.713 not determined missing 454 Broad Institute 22.4x 100 0 100 0.14 GCF_000161955.2 ACOI02 2149 2230 2230 27 4 49 1 Streptococcus_gordonii_homd_HMT_622 GCA_000161975.1 HMT-759 ATCC 49989 Named Cultivated Oral (Abundance: Scarce) "HMT-759 Peptostreptococcaceae [G5 ""Eubacterium""] saphenum ATCC 49989" 1 1084901 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/161/975/GCA_000161975.1_ASM16197v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_N;s__Eubacterium_N saphenum PRJNA33149 592031 SAMN00008823 ASM16197v1 Scaffold 2010-02-19T19:38:06.093 not determined missing WUGSC 88.42 0.71 97.11 0 GCF_000161975.1 ACON01 935 988 988 7 7 38 1 Anaerovoracaceae__G5__saphenum_homd_HMT_759 GCA_000161995.1 HMT-777 E3_33 E1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-777 Jonquetella anthropi E3_33 E1 2 1790058 59.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/161/995/GCA_000161995.1_ASM16199v1 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Jonquetella;s__Jonquetella anthropi PRJNA33111 645512 SAMN00008831 ASM16199v1 Scaffold 2010-02-19T20:17:07.390 not determined missing WUGSC 99.53 100 0 99.99 0.04 GCF_000161995.1 ACOO02 1634 1707 1707 12 7 53 1 Jonquetella_anthropi_homd_HMT_777 GCA_000162235.2 HMT-200 3_1_36A2 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii 3_1_36A2 1 2268272 27.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/235/GCA_000162235.2_ASM16223v2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA38357 469604 SAMN02463738 ASM16223v2 Complete Genome Newbler v. 2.0.0-PostRelease-1/21/2009 2013-12-18T11:11:33.496 not determined 454 Broad Institute 18.2x 97.49 100 0 99.99 0.07 GCF_000162235.2 2156 2238 2238 19 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_000162295.1 HMT-554 ATCC 19606 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-554 Acinetobacter baumannii ATCC 19606 22 3971516 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/295/GCA_000162295.1_ASM16229v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii PRJNA38509 575584 SAMN02463741 ASM16229v1 Scaffold 2013-12-18T11:11:33.873 not determined missing Broad Institute 99.99 99.09 0 100 0.15 GCF_000162295.1 ACQB01 3722 3831 3831 42 3 63 1 Acinetobacter_baumannii_homd_HMT_554 GCA_000162355.2 HMT-420 3_1_33 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis 3_1_33 5 2302090 27.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/355/GCA_000162355.2_Fuso_sp_3_1_33_V2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA38519 469603 SAMN02463746 Fuso_sp_3_1_33_V2 Scaffold allpaths v. R39099 2013-12-18T11:11:34.460 not determined missing Illumina Broad Institute 136.0x 96.86 100 0 100 0.23 GCF_000162355.2 ACQE02 2097 2180 2180 21 14 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_000162415.1 HMT-317 F0108 Unnamed Cultivated Oral (Abundance: High) HMT-317 Hoylesella sp. HMT-317 F0108 61 4099098 48.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/415/GCA_000162415.1_ASM16241v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella conceptionensis PRJNA38521 575615 SAMN02595329 ASM16241v1 Scaffold 2014-01-23T10:15:14.777 Broad Institute 99.66 0.08 99.74 0.08 GCF_000162415.1 ACQH01 3318 3375 3375 8 3 45 1 Hoylesella_sp_HMT_317_homd_HMT_317 GCA_000162455.1 HMT-560 D17 Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae D17 84 3357950 51.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/455/GCA_000162455.1_ASM16245v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJNA38737 575611 SAMN02463748 ASM16245v1 Scaffold 2013-12-18T11:11:34.710 not determined missing Broad Institute 98.56 96.41 0.11 99.36 0.17 GCF_000162455.1 ACRB01 2733 2792 2792 9 3 46 1 Segatella_buccae_homd_HMT_560 GCA_000162475.2 HMT-596 ATCC 700633 Named Cultivated Oral (Abundance: High) HMT-596 Granulicatella elegans ATCC 700633 1 1743361 33.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/475/GCA_000162475.2_Gran_ele_ATCC_700633_V2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella elegans PRJNA38745 626369 SAMN02595330 Gran_ele_ATCC_700633_V2 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2014-01-23T10:15:14.940 454 Broad Institute 92.7x 88.52 0 90.33 0.18 GCF_000162475.2 ACRF02 1577 1655 1655 39 5 34 0 Granulicatella_elegans_homd_HMT_596 GCA_000162495.1 HMT-398 M143 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani M143 13 1880978 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/495/GCA_000162495.1_ASM16249v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA38755 563037 SAMN02463755 ASM16249v1 Scaffold 2013-12-18T11:11:35.653 not determined missing Broad Institute 99.47 0.27 99.99 0.02 GCF_000162495.1 ACRK01 1787 1877 1877 39 3 47 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_000162495.1 HMT-398 M143 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani M143 13 1880978 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/495/GCA_000162495.1_ASM16249v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA38755 563037 SAMN02463755 ASM16249v1 Scaffold 2013-12-18T11:11:35.653 not determined missing Broad Institute 99.47 0.27 99.99 0.02 GCF_000162495.1 ACRK01 1787 1877 1877 39 3 47 1 Streptococcus_oralis_HMT_071_398_707 GCA_000162875.1 HMT-602 ATCC 700122 Named Cultivated Oral (Abundance: Scarce) HMT-602 Slackia exigua ATCC 700122 2 2096289 62.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/875/GCA_000162875.1_ASM16287v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia;s__Slackia exigua PRJNA38335 649764 SAMN00008861 ASM16287v1 Scaffold 2010-02-19T21:55:06.403 not determined missing WUGSC 99.99 100 0 98.81 1.2 GCF_000162875.1 ACUX02 1717 1790 1790 11 12 49 1 Slackia_exigua_homd_HMT_602 GCA_000162895.1 HMT-848 F0332 Named Cultivated Oral (Abundance: Medium) HMT-848 Peptidiphaga gingivicola F0332 4 2520418 64.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/895/GCA_000162895.1_ASM16289v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Peptidiphaga;s__Peptidiphaga gingivicola PRJNA38311 649743 SAMN00008757 ASM16289v1 Scaffold 2010-02-19T16:12:06.487 not determined missing WUGSC 97.5 0.83 99.75 0.13 GCF_000162895.1 ACUY02 2097 2155 2155 5 4 48 1 Peptidiphaga_gingivicola_homd_HMT_848 GCA_000162915.1 HMT-311 F0302 Named Cultivated Oral (Abundance: High) HMT-311 Segatella oris F0302 18 3251636 43.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/915/GCA_000162915.1_ASM16291v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oris PRJNA38329 649760 SAMN00008848 ASM16291v1 Scaffold 2010-02-19T21:07:09.703 not determined missing WUGSC 97.38 99.32 0 99.98 0.04 GCF_000162915.1 ACUZ02 2772 2848 2848 14 9 51 2 Segatella_oris_homd_HMT_311 GCA_000162935.1 HMT-572 F0319 Named Cultivated Oral (Abundance: Medium) HMT-572 Prevotella veroralis F0319 26 2993935 42.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/935/GCA_000162935.1_ASM16293v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella veroralis PRJNA38331 649761 SAMN00008850 ASM16293v1 Scaffold 2010-02-19T21:13:02.640 not determined missing WUGSC 96.85 99.32 0 99.98 0.2 GCF_000162935.1 ACVA01 2524 2604 2604 9 20 50 1 Prevotella_veroralis_homd_HMT_572 GCA_000162955.1 HMT-224 F0254 Named Cultivated Oral (Abundance: Medium) HMT-224 Leptotrichia hofstadii F0254 10 2456453 30.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/162/955/GCA_000162955.1_ASM16295v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia hofstadii PRJNA33151 634994 SAMN00008833 ASM16295v1 Scaffold 2010-02-19T20:22:04.550 not determined missing WUGSC 96.72 92.69 1.52 93.41 1.7 GCF_000162955.1 ACVB02 2702 2786 2786 20 17 46 1 Leptotrichia_hofstadii_homd_HMT_224 GCA_000163035.1 HMT-469 D18 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica D18 46 3292341 42.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/035/GCA_000163035.1_ASM16303v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_D PRJNA40045 575612 SAMN02463806 ASM16303v1 Scaffold 2013-12-18T11:11:41.760 not determined missing Broad Institute 95.52 98.99 0 99.95 0.01 GCF_000163035.1 ACWY01 2598 2662 2662 12 4 47 1 Prevotella_melaninogenica_homd_HMT_469 GCA_000163055.2 HMT-299 F0039 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis F0039 2 2480269 37.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/055/GCA_000163055.2_ASM16305v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp000163055 PRJNA40047 575614 SAMN02463807 ASM16305v2 Complete Genome Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:41.870 not determined 454 Broad Institute 20.2x 98.99 0.12 99.99 0.16 GCF_000163055.2 1984 2051 2051 5 12 49 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_000163415.1 HMT-710 F0309 Named NVP Cultivated Oral (Abundance: Medium) HMT-710 Schaalia dentiphila F0309 6 2431995 65.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/415/GCA_000163415.1_ASM16341v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia dentiphila PRJNA38309 649742 SAMN00008754 ASM16341v1 Scaffold 2010-02-19T16:08:06.306 not determined missing WUGSC 88 96.45 0.47 99.95 0.06 GCF_000163415.1 ACYT02 2070 2136 2136 10 7 48 1 Schaalia_dentiphila_homd_HMT_710 GCA_000163435.1 HMT-047 ATCC 43734 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium ATCC 43734 21 2492821 62.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/435/GCA_000163435.1_ASM16343v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium PRJNA31445 525262 SAMN00001506 ASM16343v1 Scaffold 2009-01-16T17:09:02.813 not determined missing BCM 99.99 97.95 0.68 99.76 0.02 GCF_000163435.1 ACYW01 2152 2213 0 6 3 51 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_000163495.1 HMT-658 F0295 Named Cultivated Oral (Abundance: Medium) HMT-658 Hoylesella loescheii F0295 39 3635499 47.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/495/GCA_000163495.1_ASM16349v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella loescheii PRJNA38731 619693 SAMN00216890 ASM16349v1 Scaffold 2011-03-01T16:52:07.243 not determined missing Baylor College of Medicine 98.99 0.11 98.11 0.02 GCF_000163495.1 ACZS01 2891 2947 2947 8 3 44 1 Hoylesella_loescheii_homd_HMT_658 GCA_000163615.3 HMT-531 D7S-1 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans D7S-1 1 2308962 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/615/GCA_000163615.3_ASM16361v3 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA41903 694569 SAMN02604275 ASM16361v3 Complete Genome 454 Newbler assembler v. 2.0.00.22 2014-01-30T15:13:22.053 454 Illumina MiSeq University of Washington Department of Microbiology 17.6x 97.77 99.66 0.23 100 0.12 GCF_000163615.3 2207 2495 2495 214 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_000163695.1 HMT-274 F0058 Unnamed Cultivated Oral (Abundance: High) HMT-274 Paludibacteraceae [G1] bacterium HMT-274 F0058 10 2113539 43.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/695/GCA_000163695.1_ASM16369v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__F0058;s__F0058 sp000163695 PRJNA41957 575590 SAMN02463821 ASM16369v1 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:43.283 not determined missing 454 Broad Institute 39.0x 98.39 0.54 99.16 1.79 GCF_000163695.1 ADCM01 1930 1991 1991 11 5 44 1 Paludibacteraceae__G1__bacterium_HMT_274_homd_HMT_274 GCA_000163715.1 HMT-161 3_1_44 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula 3_1_44 16 2163458 38.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/715/GCA_000163715.1_ASM16371v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA41975 457416 SAMN02463830 ASM16371v1 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:44.227 not determined missing 454 Broad Institute 24.2x 100 0 99.99 0.27 GCF_000163715.1 ADCV01 1910 1987 1987 21 6 49 1 Veillonella_parvula_homd_HMT_161 GCA_000163735.1 HMT-161 6_1_27 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula 6_1_27 10 2174425 38.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/735/GCA_000163735.1_ASM16373v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA41977 450749 SAMN02463831 ASM16373v1 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:44.333 not determined missing 454 Broad Institute 22.5x 100 0 100 0.35 GCF_000163735.1 ADCW01 1923 2001 2001 22 6 49 1 Veillonella_parvula_homd_HMT_161 GCA_000163755.1 HMT-642 F0304 Named Cultivated Oral (Abundance: Scarce) HMT-642 Scardovia inopinata F0304 9 1804013 48.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/755/GCA_000163755.1_ASM16375v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia inopinata PRJNA41979 641146 SAMN02463832 ASM16375v1 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:44.437 not determined missing 454 Broad Institute 161.5x 99.99 99.07 0.47 96.94 0.41 GCF_000163755.1 ADCX01 1463 1523 1523 11 2 46 1 Scardovia_inopinata_homd_HMT_642 GCA_000163775.2 HMT-683 ATCC 29453 Named Cultivated Oral (Abundance: High) HMT-683 Simonsiella muelleri ATCC 29453 29 2372614 42.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/775/GCA_000163775.2_Simo_muel_ATCC_29453_V2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Simonsiella;s__Simonsiella muelleri PRJNA41981 641147 SAMN02463833 Simo_muel_ATCC_29453_V2 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:44.610 not determined missing Illumina Broad Institute 180.0x 99.98 97.46 0.53 100 0.06 GCF_000163775.2 ADCY02 2216 2300 2300 18 10 55 1 Simonsiella_muelleri_homd_HMT_683 GCA_000163835.1 HMT-586 F0305 Named Cultivated Oral (Abundance: Scarce) HMT-586 Parascardovia denticolens F0305 9 1897118 58.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/835/GCA_000163835.1_Paras_denticolens_F0305 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia denticolens PRJNA42549 641144 SAMN02463844 Paras_denticolens_F0305 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:45.727 not determined missing 454 Broad Institute 138.0x 99.99 99.77 0 99.93 0.21 GCF_000163835.1 ADEB01 1528 1581 1581 5 2 45 1 Parascardovia_denticolens_homd_HMT_586 GCA_000163895.2 HMT-539 ATCC 35896 Named Cultivated Oral (Abundance: Medium) HMT-539 Filifactor alocis ATCC 35896 1 1931012 35.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/895/GCA_000163895.2_ASM16389v2 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Filifactor;s__Filifactor alocis PRJNA30485 546269 SAMN02463683 ASM16389v2 Complete Genome Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:25.773 not determined 454 Broad Institute 47.3x 97.9 0.7 99.83 0.5 GCF_000163895.2 1688 1779 1779 31 12 47 1 Filifactor_alocis_homd_HMT_539 GCA_000163915.2 HMT-200 3_1_27 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii 3_1_27 3 2190228 27.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/915/GCA_000163915.2_ASM16391v2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA41563 469602 SAMN02463816 ASM16391v2 Complete Genome Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:42.833 not determined 454 Broad Institute 17.0x 97.67 100 0 99.99 0.44 GCF_000163915.2 2028 2108 2108 18 15 46 1 Fusobacterium_vincentii_homd_HMT_200 GCA_000163935.1 HMT-201 1_1_41FAA Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum 1_1_41FAA 31 2479455 28.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/163/935/GCA_000163935.1_ASM16393v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium periodonticum_B PRJNA32469 469621 SAMN02463706 ASM16393v1 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:28.827 not determined missing 454 Broad Institute 36.4x 92.97 100 0 99.97 0.17 GCF_000163935.1 ADGG01 2383 2461 2461 23 8 46 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_000164095.1 HMT-707 ATCC 35037 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis ATCC 35037 10 1913838 41.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/164/095/GCA_000164095.1_ASM16409v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA38733 655813 SAMN00120580 ASM16409v1 Scaffold 2010-11-19T11:19:02.317 not determined missing Baylor College of Medicine 99.99 99.42 0.2 99.99 0.03 GCF_000164095.1 ADMV01 1785 1859 1859 38 3 32 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_000164095.1 HMT-707 ATCC 35037 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis ATCC 35037 10 1913838 41.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/164/095/GCA_000164095.1_ASM16409v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA38733 655813 SAMN00120580 ASM16409v1 Scaffold 2010-11-19T11:19:02.317 not determined missing Baylor College of Medicine 99.99 99.42 0.2 99.99 0.03 GCF_000164095.1 ADMV01 1785 1859 1859 38 3 32 1 Streptococcus_oralis_HMT_071_398_707 GCA_000164695.2 HMT-587 ATCC 17931 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa ATCC 17931 1 2506025 53.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/164/695/GCA_000164695.2_ASM16469v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA48447 762948 SAMN00120582 ASM16469v2 Complete Genome Newbler Assembler v. 2.3.10192009 2010-11-19T12:37:01.937 not determined 454 Baylor College of Medicine 35.0x 99.99 99.34 0 100 0.07 GCF_000164695.2 2140 2212 2212 14 8 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_000165525.1 HMT-641 R2866 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae R2866 1 1932306 38.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/165/525/GCA_000165525.1_ASM16552v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA9621 262728 SAMN02604259 ASM16552v1 Complete Genome 2014-01-30T15:13:21.237 University of Washington Genome Center; Seattle Biomedical Research Institute 97.27 99.67 0 100 0 GCF_000165525.1 1829 1943 1943 35 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_000165575.1 HMT-641 R2846 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae R2846 1 1819370 38.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/165/575/GCA_000165575.1_ASM16557v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA9620 262727 SAMN02604260 ASM16557v1 Complete Genome 2014-01-30T15:13:21.280 University of Washington; Seattle Biomedical Research Institute 97.23 99.77 0.23 100 0.04 GCF_000165575.1 1695 1805 1805 33 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_000165735.1 HMT-122 F0359 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis F0359 38 1765528 45.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/165/735/GCA_000165735.1_ASM16573v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJNA43125 706434 SAMN00189149 ASM16573v1 Scaffold Velvet v. 0.7.57 2010-12-23T15:39:04.037 not determined missing Illumina Washington University Genome Center 124.7x 100 0 98.33 0.02 GCF_000165735.1 AECS01 1699 1779 1779 28 3 48 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_000165835.1 HMT-343 A8 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-343 Achromobacter xylosoxidans A8 3 7359146 65.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/165/835/GCA_000165835.1_ASM16583v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter;s__Achromobacter xylosoxidans_B PRJNA48393 762376 SAMN02603404 ASM16583v1 Complete Genome 2014-01-30T14:21:27.253 Institute of Molecular Genetics, Academy of Sciences of the Czech Republic 86.76 99.53 0.03 100 0.37 GCF_000165835.1 6750 6849 6849 25 10 63 1 Achromobacter_xylosoxidans_homd_HMT_343 GCA_000167275.1 HMT-824 Vollum Named Cultivated Pathogen (Abundance: Scarce) HMT-824 Bacillus anthracis Vollum 52 5488459 35.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/167/275/GCA_000167275.1_ASM16727v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis PRJNA10797 261591 SAMN02435883 ASM16727v1 Scaffold 2013-12-04T13:10:33.520 J. Craig Venter Institute 99.99 98.88 0.26 99.95 0.17 GCF_000167275.1 AAEP01 5729 5964 5964 125 34 75 1 Bacillus_anthracis_homd_HMT_824 GCA_000172135.1 HMT-588 ATCC 27678 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-588 Bifidobacterium dentium ATCC 27678 2 2642081 58.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/172/135/GCA_000172135.1_ASM17213v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium PRJNA20555 473819 SAMN00000021 ASM17213v1 Contig 2011-02-24T14:16:27.737 not determined missing Washington University Genome Sequencing Center 99.98 100 0 99.98 0.58 GCF_000172135.1 ABIX02 2135 2210 2210 9 9 56 1 Bifidobacterium_dentium_homd_HMT_588 GCA_000173655.1 HMT-031 SK46 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum SK46 48 2513912 58.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/173/655/GCA_000173655.1_ASM17365v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum_A PRJNA31007 553204 SAMN00000714 ASM17365v1 Contig 2008-10-03T13:51:01.580 not determined missing J. Craig Venter Institute 94.32 99.85 0 100 0.08 GCF_000173655.1 ABZU01 2153 2220 2220 13 2 51 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_000173675.1 HMT-775 Capno Named Cultivated Oral (Abundance: Medium) HMT-775 Capnocytophaga sputigena Capno 65 2997845 38.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/173/675/GCA_000173675.1_ASM17367v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena PRJNA30997 553177 SAMN00000681 ASM17367v1 Contig 2008-10-02T14:24:55.953 not determined missing J. Craig Venter Institute 99.99 99.52 0 99.89 0.26 GCF_000173675.1 ABZV01 2701 2750 2750 7 3 38 1 Capnocytophaga_sputigena_homd_HMT_775 GCA_000173875.1 HMT-682 ATCC 25996 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa ATCC 25996 67 2578748 51.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/173/875/GCA_000173875.1_ASM17387v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA30477 546266 SAMN00008841 ASM17387v1 Contig 2010-02-19T20:51:09.413 not determined missing Washington University Genome Sequencing Center 99.81 0.23 99.99 0.07 GCF_000173875.1 ACDX02 2379 2455 2455 17 5 53 1 Neisseria_mucosa_homd_HMT_682 GCA_000173895.1 HMT-956 ATCC 14685 Named Cultivated Oral (Abundance: High) HMT-956 Neisseria cinerea ATCC 14685 35 1872773 50.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/173/895/GCA_000173895.1_ASM17389v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria cinerea PRJNA30469 546262 SAMN00008837 ASM17389v1 Contig 2010-02-19T20:38:07.917 not determined missing Washington University Genome Sequencing Center 99.99 98.12 0 100 0 GCF_000173895.1 ACDY02 1753 1851 1851 35 5 57 1 Neisseria_cinerea_homd_HMT_956 GCA_000173915.1 HMT-626 ATCC 10379 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 ATCC 10379 15 1916192 30.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/173/915/GCA_000173915.1_ASM17391v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans PRJNA30487 546270 SAMN00000721 ASM17391v1 Contig 2008-10-03T13:58:01.766 not determined missing Human Microbiome Project 99.97 98.08 0.86 99.96 1.36 GCF_000173915.1 ACDZ02 1688 1780 0 33 15 43 1 Gemella_haemolysans_HMT_434_626 GCA_000173915.1 HMT-626 ATCC 10379 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 ATCC 10379 15 1916192 30.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/173/915/GCA_000173915.1_ASM17391v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans PRJNA30487 546270 SAMN00000721 ASM17391v1 Contig 2008-10-03T13:58:01.766 not determined missing Human Microbiome Project 99.97 98.08 0.86 99.96 1.36 GCF_000173915.1 ACDZ02 1688 1780 0 33 15 43 1 Gemella_haemolysans_clade_626_homd_HMT_626 GCA_000173935.1 HMT-610 NRL30031/H210 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens NRL30031/H210 117 2205588 49.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/173/935/GCA_000173935.1_ASM17393v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens PRJNA30473 546264 SAMN00008839 ASM17393v1 Contig 2010-02-19T20:45:08.360 not determined missing Washington University Genome Sequencing Center 99.97 99.7 0.23 99.99 0.12 GCF_000173935.1 ACEN01 2137 2218 2218 19 3 58 1 Neisseria_flavescens_homd_HMT_610 GCA_000173955.1 HMT-101 NJ9703 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava NJ9703 63 2292986 49.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/173/955/GCA_000173955.1_ASM17395v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA30483 546268 SAMN00008843 ASM17395v1 Contig 2010-02-19T20:57:04.007 not determined missing Washington University Genome Sequencing Center 94.86 99.36 0 100 0.03 GCF_000173955.1 ACEO02 2232 2311 2311 20 4 54 1 Neisseria_perflava_homd_HMT_101 GCA_000173995.1 HMT-649 ATCC 23970 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica ATCC 23970 101 2171992 52.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/173/995/GCA_000173995.1_ASM17399v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA30475 546265 SAMN00008840 ASM17399v1 Contig 2010-02-19T20:48:06.343 not determined missing Washington University Genome Sequencing Center 99.97 99.47 0.3 99.99 1.03 GCF_000173995.1 ACEQ02 2086 2157 2157 20 3 47 1 Neisseria_lactamica_homd_HMT_649 GCA_000174015.1 HMT-750 ATCC 49626 Named Cultivated Oral (Abundance: Medium) HMT-750 Lancefieldella rimae ATCC 49626 9 1626291 49.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/174/015/GCA_000174015.1_ASM17401v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__Lancefieldella rimae PRJNA30999 553184 SAMN00000717 ASM17401v1 Contig 2008-10-03T13:54:01.673 not determined missing J. Craig Venter Institute 99.99 100 0 99.53 0.52 GCF_000174015.1 ACFE01 1474 1531 1531 8 3 46 0 Lancefieldella_rimae_homd_HMT_750 GCA_000174135.1 HMT-116 SK14 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis SK14 32 2435835 32.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/174/135/GCA_000174135.1_ASM17413v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA31013 553212 SAMN00000713 ASM17413v1 Contig 2008-10-03T13:50:02.017 not determined skin from right arm of human male J. Craig Venter Institute 98.95 99.81 0.08 99.98 1.13 GCF_000174135.1 ACFR01 2332 2444 2444 50 4 57 1 Staphylococcus_capitis_homd_HMT_116 GCA_000174175.1 HMT-748 RM3267 Named Cultivated Oral (Abundance: Medium) HMT-748 Campylobacter rectus RM3267 89 2513107 44.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/174/175/GCA_000174175.1_ASM17417v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A rectus PRJNA31017 553218 SAMN00000716 ASM17417v1 Contig 2008-10-03T13:53:01.830 not determined oral J. Craig Venter Institute 99.99 99.13 0.45 99.54 0.03 GCF_000174175.1 ACFU01 2320 2369 2369 5 2 41 1 Campylobacter_rectus_homd_HMT_748 GCA_000174655.1 HMT-764 ATCC 29256 Named Cultivated Oral (Abundance: High) HMT-764 Neisseria sicca ATCC 29256 61 2830772 50.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/174/655/GCA_000174655.1_ASM17465v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sicca PRJNA30481 547045 SAMN00008842 ASM17465v1 Contig 2010-02-19T20:54:08.643 not determined missing Washington University Genome Sequencing Center 99.97 98.87 0.28 99.98 0.03 GCF_000174655.1 ACKO02 2632 2711 2711 21 3 54 1 Neisseria_sicca_homd_HMT_764 GCA_000174695.1 HMT-034 ATCC 700975 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 ATCC 700975 101 2730325 60.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/174/695/GCA_000174695.1_ASM17469v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum_F PRJNA31451 548476 SAMN00138950 ASM17469v1 Contig 2010-11-30T14:32:02.017 not determined missing Baylor College of Medecine 99.99 99.56 0 99.99 0.23 GCF_000174695.1 ACLH01 2564 2630 0 7 3 55 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_000174695.1 HMT-034 ATCC 700975 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 ATCC 700975 101 2730325 60.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/174/695/GCA_000174695.1_ASM17469v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum_F PRJNA31451 548476 SAMN00138950 ASM17469v1 Contig 2010-11-30T14:32:02.017 not determined missing Baylor College of Medecine 99.99 99.56 0 99.99 0.23 GCF_000174695.1 ACLH01 2564 2630 0 7 3 55 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_000174755.1 HMT-337 ATCC 33624 Named Cultivated Oral (Abundance: High) HMT-337 Capnocytophaga gingivalis ATCC 33624 37 2667138 40.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/174/755/GCA_000174755.1_ASM17475v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga gingivalis PRJNA31387 553178 SAMN00001917 ASM17475v1 Contig 2009-02-24T11:35:09.460 not determined missing J. Craig Venter Institute 99.76 0.48 99.97 0.13 GCF_000174755.1 ACLQ01 2467 2530 2530 6 8 48 1 Capnocytophaga_gingivalis_homd_HMT_337 GCA_000174775.1 HMT-785 60-3 Named Cultivated Vaginal (Abundance: Medium) HMT-785 Porphyromonas uenonis 60-3 250 2242885 52.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/174/775/GCA_000174775.1_ASM17477v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas uenonis_A PRJNA34101 596327 SAMN00002220 ASM17477v1 Contig 2009-04-09T16:18:08.937 not determined missing J. Craig Venter Institute 93.49 99.92 2.36 99.28 0.09 GCF_000174775.1 ACLR01 1881 1943 1943 11 5 45 1 Porphyromonas_uenonis_homd_HMT_785 GCA_000174815.1 HMT-273 ATCC 35406 Named Cultivated Oral (Abundance: High) HMT-273 Porphyromonas endodontalis ATCC 35406 37 2064508 47.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/174/815/GCA_000174815.1_ASM17481v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas endodontalis PRJNA31385 553175 SAMN00002247 ASM17481v1 Contig 2009-04-23T11:56:04.123 not determined missing J. Craig Venter Institute 99.99 99.45 0 98.25 0.15 GCF_000174815.1 ACNN01 1754 1814 1814 10 3 46 1 Porphyromonas_endodontalis_homd_HMT_273 GCA_000175275.1 HMT-476 SK114 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava SK114 31 2204114 49.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/275/GCA_000175275.1_ASM17527v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA34085 596320 SAMN00001913 ASM17527v1 Contig 2009-02-20T11:54:06.613 not determined missing J. Craig Venter Institute 95.14 99.59 0.05 100 0.6 GCF_000175275.1 ACQV01 2105 2238 2238 57 15 60 1 Neisseria_subflava_homd_HMT_476 GCA_000175315.3 HMT-893 C505 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 C505 5 3134496 68.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/315/GCA_000175315.3_Acti_vis_C505_V3 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA38743 562973 SAMN02463750 Acti_vis_C505_V3 Scaffold Newbler v. 2.0.0-PreRelease-04/10/2008 2013-12-18T11:11:35.043 not determined missing 454 Broad Institute 28.0x 88.26 98.82 0.47 99.97 0.16 GCF_000175315.3 ACRE02 2594 2667 2667 15 5 52 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_000175315.3 HMT-893 C505 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 C505 5 3134496 68.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/315/GCA_000175315.3_Acti_vis_C505_V3 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA38743 562973 SAMN02463750 Acti_vis_C505_V3 Scaffold Newbler v. 2.0.0-PreRelease-04/10/2008 2013-12-18T11:11:35.043 not determined missing 454 Broad Institute 28.0x 88.26 98.82 0.47 99.97 0.16 GCF_000175315.3 ACRE02 2594 2667 2667 15 5 52 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_000175375.1 HMT-666 ATCC 14266 Named Cultivated Oral (Abundance: High) HMT-666 Corynebacterium matruchotii ATCC 14266 8 2855988 57.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/375/GCA_000175375.1_ASM17537v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium matruchotii PRJNA31011 553207 SAMN00001942 ASM17537v1 Contig Celera Assembler v. 5.3 2009-02-26T15:41:05.800 not determined missing 454 J. Craig Venter Institute 19.3x 99.98 99.89 0 100 0.17 GCF_000175375.1 ACSH02 2525 2597 2597 8 9 54 1 Corynebacterium_matruchotii_homd_HMT_666 GCA_000175415.3 HMT-229 Paraca Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-229 Arthrospira platensis Paraca 268 6501886 44.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/415/GCA_000175415.3_ASM17541v3 d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira;s__Limnospira platensis PRJNA34793 634502 SAMN02344446 ASM17541v3 Contig SPAdes v. 3.0 2013-09-04T08:50:02.890 Switzerland pure sub-culture from non-axenic industrial culture provided by Biorigin Illumina HiSeq University of Applied Sciences of Western Switzerland 36.0x 99.44 99.34 0 100 0.09 GCF_000175415.3 ACSK03 6076 6452 6452 322 6 47 1 Arthrospira_platensis_homd_HMT_229 GCA_000175615.1 HMT-681 ATCC 25296 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ATCC 25296 25 2255158 59.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/615/GCA_000175615.1_ASM17561v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA31405 553201 SAMN00001919 ASM17561v1 Contig 2009-03-04T13:30:57.446 not determined missing J. Craig Venter Institute 99.33 0 100 0.05 GCF_000175615.1 ACVO01 1722 1793 1793 13 6 51 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_000175615.1 HMT-681 ATCC 25296 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ATCC 25296 25 2255158 59.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/615/GCA_000175615.1_ASM17561v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA31405 553201 SAMN00001919 ASM17561v1 Contig 2009-03-04T13:30:57.446 not determined missing J. Craig Venter Institute 99.33 0 100 0.05 GCF_000175615.1 ACVO01 1722 1793 1793 13 6 51 1 Rothia_mucilaginosa_HMT_147_681 GCA_000175635.1 HMT-077 SK141 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum SK141 37 2372261 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/635/GCA_000175635.1_ASM17563v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_C PRJNA31009 553206 SAMN00000719 ASM17563v1 Contig 2008-10-03T13:56:01.797 not determined missing J. Craig Venter Institute 96.13 99.6 0 99.99 0.04 GCF_000175635.1 ACVP01 2232 2295 2295 8 3 51 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_000175655.1 HMT-763 RM3277 Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae RM3277 33 2072007 45.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/655/GCA_000175655.1_ASM17565v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae PRJNA31019 553219 SAMN00000722 ASM17565v1 Contig 2008-10-03T14:00:01.910 not determined missing J. Craig Venter Institute 99.99 99.5 0.26 99.85 0.09 GCF_000175655.1 ACVQ01 1992 2040 2040 5 2 40 1 Campylobacter_showae_homd_HMT_763 GCA_000175875.1 HMT-623 RM3268 Named Cultivated Oral (Abundance: High) HMT-623 Campylobacter gracilis RM3268 33 2255573 46.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/875/GCA_000175875.1_ASM17587v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B gracilis PRJNA31021 553220 SAMN00000715 ASM17587v1 Contig 2008-10-03T13:51:02.377 not determined missing J. Craig Venter Institute 99.99 97.1 0.43 99.85 0.11 GCF_000175875.1 ACYG01 2132 2178 2178 4 2 39 1 Campylobacter_gracilis_homd_HMT_623 GCA_000175895.1 HMT-029 ATCC 35580 Named Cultivated Oral (Abundance: Low) HMT-029 Treponema vincentii clade-029 ATCC 35580 79 2514590 45.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/895/GCA_000175895.1_ASM17589v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema vincentii PRJNA34095 596324 SAMN00001903 ASM17589v1 Contig 2009-02-19T09:43:24.030 not determined missing J. Craig Venter Institute 99.15 0 97.04 1 GCF_000175895.1 ACYH01 2300 2357 0 4 3 49 1 Treponema_vincentii_HMT_029_432 GCA_000175895.1 HMT-029 ATCC 35580 Named Cultivated Oral (Abundance: Low) HMT-029 Treponema vincentii clade-029 ATCC 35580 79 2514590 45.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/895/GCA_000175895.1_ASM17589v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema vincentii PRJNA34095 596324 SAMN00001903 ASM17589v1 Contig 2009-02-19T09:43:24.030 not determined missing J. Craig Venter Institute 99.15 0 97.04 1 GCF_000175895.1 ACYH01 2300 2357 0 4 3 49 1 Treponema_vincentii_clade_029_homd_HMT_029 GCA_000176335.1 HMT-845 F0264 Named Cultivated Oral (Abundance: Medium) HMT-845 Pseudoleptotrichia goodfellowii F0264 208 2287284 31.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/176/335/GCA_000176335.1_ASM17633v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Pseudoleptotrichia;s__Pseudoleptotrichia goodfellowii PRJNA34093 596323 SAMN00004572 ASM17633v1 Contig 2009-10-27T15:44:04.190 not determined human oral cavity J. Craig Venter Institute 97.23 100 1.14 99.44 0.39 GCF_000176335.1 ADAD01 2206 2271 2271 22 3 39 1 Pseudoleptotrichia_goodfellowii_homd_HMT_845 GCA_000176735.1 HMT-737 ATCC 43768 Named Cultivated Oral (Abundance: Scarce) HMT-737 Neisseria polysaccharea ATCC 43768 139 2030958 52.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/176/735/GCA_000176735.1_ASM17673v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria polysaccharea PRJNA30479 546267 SAMN00008844 ASM17673v1 Contig 2010-02-19T20:58:08.213 not determined missing Washington University Genome Sequencing Center 99.97 99.8 0.12 99.99 0.44 GCF_000176735.1 ADBE01 1991 2063 2063 17 4 50 1 Neisseria_polysaccharea_homd_HMT_737 GCA_000176755.2 HMT-598 ATCC 29315 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata ATCC 29315 153 2275949 54.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/176/755/GCA_000176755.2_ASM17675v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA30471 546263 SAMN00008838 ASM17675v1 Contig 2010-02-19T20:41:22.347 not determined missing Washington University Genome Sequencing Center 99.95 97.27 0.45 95.76 2.94 GCF_000176755.2 ADBF01 2325 2403 2403 18 3 56 1 Neisseria_elongata_homd_HMT_598 GCA_000176775.1 HMT-830 28-1 Named Cultivated Vaginal (Abundance: Scarce) HMT-830 Mobiluncus mulieris 28-1 55 2452380 55.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/176/775/GCA_000176775.1_ASM17677v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus mulieris PRJNA34103 596328 SAMN00002501 ASM17677v1 Contig 2009-06-03T11:03:08.470 not determined missing J. Craig Venter Institute 99.08 99.53 0.95 99.98 1.81 GCF_000176775.1 ADBR01 2160 2219 2219 8 3 45 3 Mobiluncus_mulieris_homd_HMT_830 GCA_000176955.1 HMT-836 315-B Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-836 Peptoniphilus lacrimalis 315-B 71 1699205 29.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/176/955/GCA_000176955.1_ASM17695v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacrimalis PRJNA34107 596330 SAMN00008345 ASM17695v1 Contig 2010-01-28T11:07:05.807 not determined missing J. Craig Venter Institute 97.77 99.3 0 99.97 0.33 GCF_000176955.1 ADDO01 1550 1617 1617 25 2 39 1 Peptoniphilus_lacrimalis_homd_HMT_836 GCA_000177075.1 HMT-562 ATCC 35310 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-562 Hoylesella buccalis ATCC 35310 118 3033961 45.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/177/075/GCA_000177075.1_ASM17707v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccalis PRJNA40669 679190 SAMN00003363 ASM17707v1 Contig 2009-10-05T14:39:15.293 not determined missing JCVI 95.57 99.29 0 99.93 0.04 GCF_000177075.1 ADEG01 2576 2640 2640 12 3 48 1 Hoylesella_buccalis_homd_HMT_562 GCA_000177315.1 HMT-556 JCVIHMP010 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-556 Prevotella bivia JCVIHMP010 121 2424432 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/177/315/GCA_000177315.1_ASM17731v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella bivia PRJNA31377 553171 SAMN00008342 ASM17731v1 Contig 2010-01-28T11:05:07.673 not determined missing J. Craig Venter Institute 99.99 99.66 0 99.99 0.06 GCF_000177315.1 ADFO01 2059 2119 2119 11 3 45 1 Prevotella_bivia_homd_HMT_556 GCA_000177335.1 HMT-357 W5455 Named Cultivated Oral (Abundance: Scarce) HMT-357 Pyramidobacter piscolens W5455 140 2562014 59.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/177/335/GCA_000177335.1_ASM17733v1 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter;s__Pyramidobacter piscolens PRJNA34581 352165 SAMN00002506 ASM17733v1 Contig 2009-06-04T14:52:04.473 not determined missing J. Craig Venter Institute 100 0 98.82 1.29 GCF_000177335.1 ADFP01 2328 2409 2409 19 4 57 1 Pyramidobacter_piscolens_homd_HMT_357 GCA_000177355.1 HMT-797 CRIS 21A-A Named Cultivated Vaginal (Abundance: Medium) HMT-797 Prevotella amnii CRIS 21A-A 117 2415558 36.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/177/355/GCA_000177355.1_ASM17735v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella amnii PRJNA40671 679191 SAMN00003364 ASM17735v1 Contig Newbler Assembler v. 2.0.00.20 2009-10-05T14:39:18.190 not determined amniotic fluid 454 JCVI 113.0x 98.33 99.66 0 99.98 0.11 GCF_000177355.1 ADFQ01 2034 2099 2099 14 4 46 1 Prevotella_amnii_homd_HMT_797 GCA_000177375.1 HMT-603 W1219 Named Cultivated Oral (Abundance: Medium) HMT-603 Bulleidia extructa W1219 16 1419583 36.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/177/375/GCA_000177375.1_ASM17737v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia;s__Bulleidia extructa PRJNA40673 679192 SAMN00003365 ASM17737v1 Contig 2009-10-05T14:39:21.223 not determined missing JCVI 98.1 0 97.92 0.44 GCF_000177375.1 ADFR01 1399 1460 1460 16 3 41 1 Bulleidia_extructa_homd_HMT_603 GCA_000177435.1 HMT-161 ATCC 17745 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula ATCC 17745 19 2163473 38.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/177/435/GCA_000177435.1_ASM17743v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJNA41557 686660 SAMN00009759 ASM17743v1 Contig 2010-03-15T16:32:09.700 not determined missing JCVI 95.41 100 0.6 99.99 0.21 GCF_000177435.1 ADFU01 1941 2015 2015 22 3 48 1 Veillonella_parvula_homd_HMT_161 GCA_000177555.1 HMT-841 28L Named Cultivated Vaginal (Abundance: Medium) HMT-841 Megasphaera lornae 28L 34 1726197 46.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/177/555/GCA_000177555.1_ASM17755v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera_C;s__Megasphaera_C lornae PRJNA42553 1000568 SAMN00006220 ASM17755v1 Contig 2009-12-14T16:20:06.456 not determined missing JCVI 99.17 100 0 93.6 0.04 GCF_000177555.1 ADGP01 1537 1614 1614 24 3 49 1 Megasphaera_lornae_homd_HMT_841 GCA_000178095.1 HMT-542 653-L Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius 653-L 73 2083092 35.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/178/095/GCA_000178095.1_ASM17809v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA34105 596329 SAMN00002160 ASM17809v1 Contig 2009-03-18T11:40:09.027 not determined missing J. Craig Venter Institute 98.97 100 0 99.19 0.02 GCF_000178095.1 ADJN01 1860 1953 1953 38 3 51 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_000178335.1 HMT-814 DSM 15829 Named Cultivated Vaginal (Abundance: High) HMT-814 Fannyhessea vaginae DSM 15829 52 1418601 42.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/178/335/GCA_000178335.1_ASM17833v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Fannyhessea;s__Fannyhessea vaginae PRJNA46677 525256 SAMN02471011 ASM17833v1 Scaffold phrap v. 0.990319 2013-12-19T13:34:39.230 ABI Stanford Genome Technology Center 5.0x 99.98 100 0 97.29 0.29 GCF_000178335.1 ADNA01 1145 1197 1197 8 4 39 1 Fannyhessea_vaginae_homd_HMT_814 GCA_000178355.1 HMT-829 ATCC 14018 Named Cultivated Vaginal (Abundance: High) HMT-829 Gardnerella vaginalis ATCC 14018 145 1604161 41.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/178/355/GCA_000178355.1_ASM17835v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium vaginale PRJNA46675 585528 SAMN02471014 ASM17835v1 Scaffold phrap v. 0.990319 2013-12-19T13:34:39.380 ABI Stanford Genome Technology Center 5.0x 99.91 95.83 0.23 95.02 1.32 GCF_000178355.1 ADNB01 1244 1296 1296 15 2 34 1 Gardnerella_vaginalis_homd_HMT_829 GCA_000178435.1 HMT-312 ATCC 11563 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-312 Aerococcus viridans ATCC 11563 150 2005853 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/178/435/GCA_000178435.1_ASM17843v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;s__Aerococcus viridans PRJNA38729 655812 SAMN00139312 ASM17843v1 Contig Newbler Assembler v. 2.0.0-Eclipse 2010-12-02T17:05:02.233 not determined missing 454 Baylor College of Medicine 37.6x 99.99 98.9 1.65 99.92 1.15 GCF_000178435.1 ADNT01 1830 1914 1914 37 4 41 2 Aerococcus_viridans_homd_HMT_312 GCA_000178895.1 HMT-698 ATCC 23726 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto ATCC 23726 67 2237034 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/178/895/GCA_000178895.1_ASM17889v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA31471 525283 SAMN00001497 ASM17889v1 Contig Newbler Assembler v. 2.0.0-Eclipse 2009-01-14T17:51:02.113 not determined missing 454 BCM 26.0x 98.69 100 0.16 99.99 0.15 GCF_000178895.1 ADVK01 2063 2127 2127 17 3 43 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_000179335.1 HMT-836 F0141 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-836 Peptoniphilus lacrimalis F0141 145 1625156 30.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/179/335/GCA_000179335.1_ASM17933v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacrimalis PRJNA49437 768724 SAMN00031762 ASM17933v1 Contig Newbler v. 2.3 2010-08-06T11:53:03.910 not determined missing 454 J. Craig Venter Institute 18.0x 94.41 0.7 93.14 1.93 GCF_000179335.1 AEAA01 1543 1606 1606 23 3 36 1 Peptoniphilus_lacrimalis_homd_HMT_836 GCA_000179735.1 HMT-524 ACS-049-V-Sch6 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica ACS-049-V-Sch6 63 2053871 38.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/179/735/GCA_000179735.1_ASM17973v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA51075 866776 SAMN00100757 ASM17973v1 Contig Newbler v. 2.3 2010-08-10T16:49:15.980 not determined missing 454 J. Craig Venter Institute 73.0x 96.77 100 0 99.99 0.07 GCF_000179735.1 AEDR01 1836 1908 1908 18 4 49 1 Veillonella_atypica_homd_HMT_524 GCA_000179755.1 HMT-524 ACS-134-V-Col7a Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica ACS-134-V-Col7a 70 2151913 38.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/179/755/GCA_000179755.1_ASM17975v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA51079 866778 SAMN00100747 ASM17975v1 Contig Newbler v. 2.3 2010-08-10T16:49:09.517 not determined missing 454 J. Craig Venter Institute 25.0x 97.4 100 0 100 0.15 GCF_000179755.1 AEDS01 1909 1981 1981 21 5 45 1 Veillonella_atypica_homd_HMT_524 GCA_000180015.1 HMT-709 PB013-T2-3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-709 Limosilactobacillus oris PB013-T2-3 89 2115990 49.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/015/GCA_000180015.1_ASM18001v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus oris PRJNA54025 908339 SAMN00116776 ASM18001v1 Contig Newbler v. 2.3 2010-10-27T15:41:03.673 not determined missing 454 J. Craig Venter Institute 60.0x 98.31 99.45 0.55 99.99 0.95 GCF_000180015.1 AEKL01 2014 2107 2107 30 3 59 1 Limosilactobacillus_oris_homd_HMT_709 GCA_000180035.1 HMT-411 F0405 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis F0405 16 2050302 41.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/035/GCA_000180035.1_ASM18003v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_C PRJNA53565 905067 SAMN00115113 ASM18003v1 Contig Celera Assembler v. 6.1 2010-10-08T15:21:04.700 not determined missing 454 J. Craig Venter Institute 17.0x 94.29 99.25 0 97.86 0 GCF_000180035.1 AEKM01 1967 2085 2085 34 19 64 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_000180055.1 HMT-594 F0415 Named Cultivated Oral (Abundance: Scarce) HMT-594 Streptococcus downei F0415 17 2239421 43.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/055/GCA_000180055.1_ASM18005v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus downei PRJNA53567 904293 SAMN00115114 ASM18005v1 Contig Celera Assembler v. 6.1 2010-10-08T15:21:05.080 not determined missing 454 J. Craig Venter Institute 27.0x 99.65 99.63 0.47 99.99 0.42 GCF_000180055.1 AEKN01 2143 2268 2268 51 12 61 1 Streptococcus_downei_homd_HMT_594 GCA_000180075.1 HMT-021 F0396 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis F0396 11 2022289 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/075/GCA_000180075.1_ASM18007v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA53573 904306 SAMN00115117 ASM18007v1 Contig Celera Assembler v. 6.1 2010-10-08T15:23:04.320 not determined missing 454 J. Craig Venter Institute 23.0x 98.47 99.53 0.23 99.99 0.1 GCF_000180075.1 AEKO01 1973 2112 2112 59 21 58 1 Streptococcus_vestibularis_homd_HMT_021 GCA_000180095.1 HMT-550 Mu50-omega Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus Mu50-omega 1 2878428 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/095/GCA_000180095.1_ASM18009v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJDA33445 585891 SAMD00036539 ASM18009v1 Contig 2015-10-16T01:00:24.000 Juntendo University 98.92 99.51 0.08 100 0.58 GCF_000180095.1 BABM01 2661 2863 2863 124 16 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000180155.1 HMT-043 K20 Named Cultivated Oral (Abundance: Medium) HMT-043 Actinomyces oris clade-043 K20 771 2872429 67.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/155/GCA_000180155.1_ASM18015v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_A PRJDA51265 871541 SAMD00036544 ASM18015v1 Contig 2015-09-25T10:15:38.000 Osaka Dental University 94.58 93.28 1.83 84.26 1.42 GCF_000180155.1 BABV01 2506 2575 2575 13 3 52 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_000180155.1 HMT-043 K20 Named Cultivated Oral (Abundance: Medium) HMT-043 Actinomyces oris clade-043 K20 771 2872429 67.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/155/GCA_000180155.1_ASM18015v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_A PRJDA51265 871541 SAMD00036544 ASM18015v1 Contig 2015-09-25T10:15:38.000 Osaka Dental University 94.58 93.28 1.83 84.26 1.42 GCF_000180155.1 BABV01 2506 2575 2575 13 3 52 1 Actinomyces_oris_clade_043_homd_HMT_043 GCA_000180435.1 HMT-087 type strain: DSM 20030 = NCTC 2665 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-087 Micrococcus luteus type strain 134 2320592 73.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/435/GCA_000180435.1_ASM18043v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus;s__Micrococcus luteus PRJEA30571 465515 SAMEA2272752 ASM18043v1 Contig 2013-12-20T12:43:58.313 IG/CEA 99.95 89.76 0.18 86 0.07 GCF_000180435.1 CABC01 2166 2228 2228 12 1 48 1 Micrococcus_luteus_homd_HMT_087 GCA_000180515.2 HMT-734 A45 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae A45 1 2129934 39.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/515/GCA_000180515.2_ASM18051v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA50805 869309 SAMEA3138306 ASM18051v2 Complete Genome 2014-11-21T08:58:32.900 Wellcome Trust Sanger Institute 98.6 99.62 0.21 100 0.14 GCF_000180515.1 2219 2363 2363 73 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000180595.1 HMT-649 Y92-1009 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica Y92-1009 44 2023964 52.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/595/GCA_000180595.1_ASM18059v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJEA50739 869214 SAMEA2272069 ASM18059v1 Contig 2013-12-20T12:42:54.390 United Kingdom:Northern Irelan throat swab Health Protection Agency, Porton Down 97.1 95.39 0 99.77 0.04 GCF_000180595.1 CACL01 1893 1966 1966 18 4 50 1 Neisseria_lactamica_homd_HMT_649 GCA_000181835.1 HMT-824 A0488 Named Cultivated Pathogen (Abundance: Scarce) HMT-824 Bacillus anthracis A0488 63 5392168 35.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/181/835/GCA_000181835.1_ASM18183v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis PRJNA27913 486624 SAMN02470254 ASM18183v1 Scaffold 2013-12-19T13:10:09.136 Los Alamos National Laboratory 99.99 96.98 0.39 98.2 0.22 GCF_000181835.1 ABJC01 5603 5836 5836 120 28 84 1 Bacillus_anthracis_homd_HMT_824 GCA_000183445.2 HMT-843 UPII 345-E Named Cultivated Vaginal (Abundance: Medium) HMT-843 Dialister micraerophilus UPII 345-E 32 1395825 35.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/183/445/GCA_000183445.2_ASM18344v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister micraerophilus PRJNA59521 910314 SAMN00116779 ASM18344v1 Contig Newbler v. 2.3 2010-10-27T15:45:04.193 not determined missing 454 J. Craig Venter Institute 94.0x 98.16 GCF_000183445.1 AENT01 1293 1364 1364 21 3 46 1 Dialister_micraerophilus_homd_HMT_843 GCA_000183505.2 HMT-158 F0412 Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae F0412 21 2176752 38.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/183/505/GCA_000183505.2_ASM18350v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJNA52053 879309 SAMN00116785 ASM18350v1 Contig Celera Assembler v. 6.1 2010-10-27T15:54:04.250 not determined missing 454 J. Craig Venter Institute 18.0x GCF_000183505.1 AENU01 2028 2106 2106 22 9 46 1 Veillonella_rogosae_homd_HMT_158 GCA_000183605.2 HMT-547 PR426713P-I Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-547 Porphyromonas asaccharolytica PR426713P-I 58 2199119 52.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/183/605/GCA_000183605.2_ASM18360v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas asaccharolytica PRJNA59515 910312 SAMN00116777 ASM18360v1 Contig Newbler v. 2.3 2010-10-27T15:42:04.317 not determined missing 454 J. Craig Venter Institute 60.0x 98.4 GCF_000183605.1 AENO01 1735 1803 1803 18 4 45 1 Porphyromonas_asaccharolytica_homd_HMT_547 GCA_000183625.2 HMT-124 F0430 Named Cultivated Oral (Abundance: Low) HMT-124 Selenomonas artemidis F0430 15 2475066 56.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/183/625/GCA_000183625.2_ASM18362v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda artemidis PRJNA52055 879310 SAMN00116784 ASM18362v1 Contig Celera Assembler v. 6.1 2010-10-27T15:54:03.960 not determined missing 454 J. Craig Venter Institute 17.0x GCF_000183625.1 AENV01 2323 2410 2410 18 14 54 1 Selenomonas_artemidis_homd_HMT_124 GCA_000183985.1 HMT-700 F0287 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea F0287 9 2663545 40.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/183/985/GCA_000183985.1_ASM18398v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA51493 873517 SAMN00215988 ASM18398v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-02-15T14:26:03.843 not determined oral cavity 454 Baylor College of Medicine 34.5x 96.23 100 0 99.98 0.05 GCF_000183985.1 AEOH01 2202 2256 2256 10 3 40 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_000184185.1 HMT-574 W Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-574 Escherichia coli W 3 5008864 50.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/184/185/GCA_000184185.1_ASM18418v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli PRJNA48011 566546 SAMN02602978 ASM18418v1 Complete Genome 2014-01-30T11:19:21.943 AIBN/KRIBB 99.2 99.93 0.1 100 0.09 GCF_000184185.1 4697 5034 5034 225 22 89 1 Escherichia_coli_homd_HMT_574 GCA_000184745.1 HMT-717 EPS Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-717 Variovorax paradoxus EPS 1 6550056 66.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/184/745/GCA_000184745.1_ASM18474v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax;s__Variovorax paradoxus_C PRJNA43457 595537 SAMN00149467 ASM18474v1 Complete Genome Newbler v. 2.3 2011-08-24T11:41:08.710 Missing 454, Illumina US DOE Joint Genome Institute 30.0x 87.74 100 0 100 0.15 GCF_000184745.1 5983 6103 6103 40 6 73 1 Variovorax_paradoxus_homd_HMT_717 GCA_000184945.1 HMT-560 ATCC 33574 Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae ATCC 33574 21 3284105 51.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/184/945/GCA_000184945.1_ASM18494v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJNA51491 873513 SAMN00216833 ASM18494v1 Scaffold Newbler Assembler v. 2.3-01162009 2011-03-01T11:34:07.013 not determined """oral, gingival crevices""" 454 Baylor College of Medicine 19.9x 99.31 0.34 99.98 0.03 GCF_000184945.1 AEPD01 2617 2679 2679 6 4 51 1 Segatella_buccae_homd_HMT_560 GCA_000185145.2 HMT-705 ATCC 33269 Named Cultivated Oral (Abundance: Low) HMT-705 Hoylesella oralis ATCC 33269 4 2839537 44.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/145/GCA_000185145.2_ASM18514v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella phocaeensis PRJNA51495 873533 SAMN00216885 ASM18514v2 Scaffold Newbler Assembler v. 2.3.10192009 2011-03-01T13:03:07.480 not determined oral 454 Baylor College of Medicine 33.7x 99.99 99.29 0.36 99.18 0 GCF_000185145.2 AEPE02 2342 2418 2418 18 8 49 1 Hoylesella_oralis_homd_HMT_705 GCA_000185265.1 HMT-707 ATCC 49296 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis ATCC 49296 5 2068336 41.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/265/GCA_000185265.1_ASM18526v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BC PRJNA53005 888049 SAMN00260261 ASM18526v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-26T11:42:06.327 not determined oral cavity 454 Baylor College of Medicine 42.5x 94.92 99.6 0.2 99.99 0.02 GCF_000185265.1 AEPO01 1964 2040 2040 40 3 32 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_000185265.1 HMT-707 ATCC 49296 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis ATCC 49296 5 2068336 41.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/265/GCA_000185265.1_ASM18526v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BC PRJNA53005 888049 SAMN00260261 ASM18526v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-26T11:42:06.327 not determined oral cavity 454 Baylor College of Medicine 42.5x 94.92 99.6 0.2 99.99 0.02 GCF_000185265.1 AEPO01 1964 2040 2040 40 3 32 1 Streptococcus_oralis_HMT_071_398_707 GCA_000185285.1 HMT-180 F0310 Unnamed Cultivated Oral (Abundance: Medium) HMT-180 Schaalia sp. HMT-180 F0310 6 2372658 66.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/285/GCA_000185285.1_ASM18528v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000185285 PRJNA53011 888052 SAMN00260256 ASM18528v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-26T10:29:05.767 not determined oral cavity 454 Baylor College of Medicine 41.4x 100 0.47 99.99 0.12 GCF_000185285.1 AEPP01 2016 2080 2080 10 3 50 1 Schaalia_sp_HMT_180_homd_HMT_180 GCA_000185305.1 HMT-762 ATCC 33393 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis ATCC 33393 5 2012010 43.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/305/GCA_000185305.1_ASM18530v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis PRJNA53019 888057 SAMN00210783 ASM18530v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-02-09T18:20:04.150 not determined oral cavity 454 Baylor College of Medicine 40.4x 99.99 99.89 0 100 0 GCF_000185305.1 AEPS01 1880 1971 1971 37 4 49 1 Aggregatibacter_segnis_homd_HMT_762 GCA_000185365.1 HMT-803 DSM 15952 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-803 Enterococcus italicus DSM 15952 55 2415788 41.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/365/GCA_000185365.1_ASM18536v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G;s__Enterococcus_G italicus PRJNA53039 888064 SAMN00215989 ASM18536v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-02-15T14:39:03.877 not determined oral cavity 454 Baylor College of Medicine 32.5x 99.96 98.34 0 99.87 0.05 GCF_000185365.1 AEPV01 2240 2327 2327 42 3 41 1 Enterococcus_italicus_homd_HMT_803 GCA_000185385.1 HMT-494 DSM 3986 Named Cultivated Oral (Abundance: Medium) HMT-494 Lachnoanaerobaculum saburreum DSM 3986 37 3082404 38.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/385/GCA_000185385.1_ASM18538v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum saburreum PRJNA52981 887325 SAMN00216780 ASM18538v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-02-25T17:38:04.000 not determined oral cavity 454 Baylor College of Medicine 31.1x 99.36 0 97.3 0.09 GCF_000185385.1 AEPW01 2821 2889 2889 16 2 49 1 Lachnoanaerobaculum_saburreum_homd_HMT_494 GCA_000185485.1 HMT-128 M23590 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis M23590 8 2523668 33.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/485/GCA_000185485.1_ASM18548v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA34653 525377 SAMN00139437 ASM18548v1 Scaffold Newbler Assembler v. 2.0.0-Eclipse 2010-12-03T15:46:03.273 not determined skin 454 Baylor College of Medicine 21.3x 99.41 99.61 0 100 0.52 GCF_000185485.1 AEQA01 2360 2499 2499 76 4 58 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_000185505.1 HMT-538 ATCC 23263 Named Cultivated Oral (Abundance: Scarce) HMT-538 Pseudoramibacter alactolyticus ATCC 23263 42 2362882 52.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/505/GCA_000185505.1_ASM18550v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Pseudoramibacter;s__Pseudoramibacter alactolyticus PRJNA52995 887929 SAMN00260151 ASM18550v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-21T16:35:08.647 not determined oral cavity 454 Baylor College of Medicine 34.8x 99.88 1.06 100 5.07 GCF_000185505.1 AEQN01 2209 2291 2291 26 6 49 1 Pseudoramibacter_alactolyticus_homd_HMT_538 GCA_000185645.1 HMT-046 M424 Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum M424 18 1752918 31.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/645/GCA_000185645.1_ASM18564v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJNA38781 562982 SAMN02595332 ASM18564v1 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2014-01-23T10:15:15.243 454 Broad Institute 35.0x 98.18 98.56 0 100 0.24 GCF_000185645.1 ACRX01 1626 1700 1700 28 3 42 1 Gemella_morbillorum_homd_HMT_046 GCA_000185845.1 HMT-307 DSM 15606 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae DSM 15606 40 3274581 43.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/845/GCA_000185845.1_ASM18584v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA53199 888832 SAMN00216886 ASM18584v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-01T14:41:07.530 not determined """gastrointestinal tract, foregut""" 454 Baylor College of Medicine 18.9x 98.98 0 99.87 0.18 GCF_000185845.1 AEQO01 2662 2724 2724 9 3 49 1 Segatella_salivae_homd_HMT_307 GCA_000186005.1 HMT-607 M64 Named Cultivated Oral (Abundance: Scarce) HMT-607 Mycoplasmopsis fermentans M64 1 1118751 26.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/186/005/GCA_000186005.1_ASM18600v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis;s__Mycoplasmopsis fermentans PRJNA13415 943945 SAMN02604339 ASM18600v1 Complete Genome 2014-01-30T15:13:25.686 a non-AIDS patient with acute respiratory disease Yang-Ming University 99.9 100 0 98.38 2.18 GCF_000186005.1 1992 2039 2039 5 5 36 1 Mycoplasmopsis_fermentans_homd_HMT_607 GCA_000186165.1 HMT-476 C102 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava C102 7 2169437 49.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/186/165/GCA_000186165.1_Neis_muco_C102_V1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA38747 435832 SAMN02463751 Neis_muco_C102_V1 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:35.170 not determined missing 454 Broad Institute 36.0x 99.77 0.23 100 0.01 GCF_000186165.1 ACRG01 2016 2092 2092 17 3 55 1 Neisseria_subflava_homd_HMT_476 GCA_000186425.1 HMT-022 ATCC 51599 Named Cultivated Oral (Abundance: High) HMT-022 Lautropia mirabilis ATCC 51599 8 3151925 65.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/186/425/GCA_000186425.1_ASM18642v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia mirabilis PRJNA52989 887898 SAMN00262616 ASM18642v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-29T17:05:07.720 not determined """oral cavity, gingival crevices""" 454 Baylor College of Medicine 27.5x 99.98 98.66 0 99.16 0.18 GCF_000186425.1 AEQP01 2538 2597 2597 12 3 44 0 Lautropia_mirabilis_homd_HMT_022 GCA_000186445.1 HMT-537 ATCC 13813 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-537 Streptococcus agalactiae ATCC 13813 21 2287892 40.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/186/445/GCA_000186445.1_ASM18644v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae PRJNA53057 888745 SAMN00217013 ASM18644v1 Scaffold Newbler Assembler v. 2.3-042010 2011-03-03T17:54:07.553 not determined oral cavity 454 Baylor College of Medicine 53.0x 99.98 99.47 0 99.99 0.23 GCF_000186445.1 AEQQ01 2114 2189 2189 50 3 22 0 Streptococcus_agalactiae_homd_HMT_537 GCA_000186465.1 HMT-073 ATCC 700641 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis ATCC 700641 6 2129953 42.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/186/465/GCA_000186465.1_ASM18646v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus australis PRJNA53201 888833 SAMN00253300 ASM18646v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-26T16:50:06.453 not determined oral cavity 454 Baylor College of Medicine 50.0x 99.98 99.66 0 100 0.03 GCF_000186465.1 AEQR01 1995 2081 2081 35 3 47 1 Streptococcus_australis_homd_HMT_073 GCA_000186545.1 HMT-543 1_2_62CV Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus 1_2_62CV 7 1821055 38.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/186/545/GCA_000186545.1_Strep_angi_1_2_62CV_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA46427 742820 SAMN02463868 Strep_angi_1_2_62CV_V1 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:48.320 not determined missing 454 Broad Institute 61.0x 95.67 100 0 99.99 0.17 GCF_000186545.1 ADME01 1774 1872 1872 33 3 61 1 Streptococcus_anginosus_homd_HMT_543 GCA_000186945.2 HMT-678 F0204 Named Cultivated Oral (Abundance: Medium) HMT-678 Solobacterium moorei F0204 33 2008072 36.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/186/945/GCA_000186945.2_ASM18694v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia;s__Bulleidia moorei PRJNA43121 706433 SAMN00189155 ASM18694v2 Scaffold Velvet v. 0.7.57 2010-12-23T15:53:04.290 not determined missing Illumina Washington University Genome Sequencing Center 44.9x 97.93 100 0 97.6 0.34 GCF_000186945.2 AECQ01 1955 2026 2026 25 3 42 1 Solobacterium_moorei_homd_HMT_678 GCA_000187125.1 HMT-124 F0399 Named Cultivated Oral (Abundance: Low) HMT-124 Selenomonas artemidis F0399 34 2210307 57.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/187/125/GCA_000187125.1_ASM18712v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda artemidis PRJNA47277 749551 SAMN00189154 ASM18712v1 Scaffold Velvet v. 0.7.57 2010-12-23T15:50:04.313 not determined missing Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 64.1x 97.41 99.65 0.05 99.92 0.11 GCF_000187125.1 AECV01 2012 2087 2087 17 4 53 1 Selenomonas_artemidis_homd_HMT_124 GCA_000187465.1 HMT-638 ATCC 700779 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 ATCC 700779 10 1905984 39.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/187/465/GCA_000187465.1_ASM18746v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis PRJNA53205 889204 SAMN00216972 ASM18746v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-02T12:19:03.687 not determined airways 454 Baylor College of Medicine 47.9x 99.98 100 0 100 0.03 GCF_000187465.1 AEVD01 1855 1936 0 35 2 43 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_000187465.1 HMT-638 ATCC 700779 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 ATCC 700779 10 1905984 39.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/187/465/GCA_000187465.1_ASM18746v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis PRJNA53205 889204 SAMN00216972 ASM18746v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-02T12:19:03.687 not determined airways 454 Baylor College of Medicine 47.9x 99.98 100 0 100 0.03 GCF_000187465.1 AEVD01 1855 1936 0 35 2 43 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_000187505.1 HMT-411 ATCC 903 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis ATCC 903 14 2131530 42.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/187/505/GCA_000187505.1_ASM18750v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_M PRJNA53003 888048 SAMN00253299 ASM18750v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-26T15:40:05.733 not determined """airways, upper respiratory tract""" 454 Baylor College of Medicine 27.3x 94.13 99.62 0 99.99 0 GCF_000187505.1 AEVE01 2012 2082 2082 33 3 33 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_000187585.1 HMT-728 ATCC 700780 Named Cultivated Oral (Abundance: Medium) HMT-728 Streptococcus peroris ATCC 700780 3 1639920 39.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/187/585/GCA_000187585.1_ASM18758v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus peroris PRJNA53059 888746 SAMN00253298 ASM18758v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-26T15:37:06.373 not determined oral cavity 454 Baylor College of Medicine 35.6x 98.31 0.34 99.98 0.01 GCF_000187585.1 AEVF01 1606 1673 1673 34 3 29 1 Streptococcus_peroris_homd_HMT_728 GCA_000187855.1 HMT-578 ATCC 51100 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus ATCC 51100 5 1982490 43.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/187/855/GCA_000187855.1_ASM18785v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus PRJNA53203 889201 SAMN00216974 ASM18785v1 Scaffold Newbler Assembler v. 2.3-042010 2011-03-02T12:19:20.297 not determined oral cavity 454 Baylor College of Medicine 42.6x 99.97 100 0 99.97 0.02 GCF_000187855.1 AEVC01 1885 1970 1970 36 3 45 1 Streptococcus_cristatus_homd_HMT_578 GCA_000187895.1 HMT-977 DSM 17135 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-977 Phocaeicola plebeius DSM 17135 19 4421924 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/187/895/GCA_000187895.1_ASM18789v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius PRJNA27829 484018 SAMN00000028 ASM18789v1 Scaffold 2008-04-04T08:44:35.013 not determined missing Washington University Genome Sequencing Center 99.25 0.68 99.96 1 GCF_000187895.1 ABQC02 3643 3757 3757 22 14 77 1 Phocaeicola_plebeius_homd_HMT_977 GCA_000188275.1 HMT-758 VMC66 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis VMC66 5 2319451 43.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/188/275/GCA_000188275.1_ASM18827v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_H PRJNA53191 888825 SAMN00253296 ASM18827v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-26T14:33:06.723 not determined blood 454 Baylor College of Medicine 42.7x 95.13 100 0 99.99 0.07 GCF_000188275.1 AEVH01 2213 2297 2297 32 4 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000188295.1 HMT-021 ATCC 49124 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis ATCC 49124 21 1872773 40.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/188/295/GCA_000188295.1_ASM18829v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA53209 889206 SAMN00253297 ASM18829v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-26T14:42:06.063 not determined oral cavity 454 Baylor College of Medicine 25.1x 99.38 0.15 99.9 0 GCF_000188295.1 AEVI01 1794 1852 1852 31 3 23 1 Streptococcus_vestibularis_homd_HMT_021 GCA_000189435.3 HMT-550 O11 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus O11 1 2766441 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/189/435/GCA_000189435.3_ASM18943v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA62079 948561 SAMN02469935 ASM18943v3 Complete Genome SPAdes v. 3.9.1 2013-12-19T13:09:44.127 Illumina GAII INRA 171.0x 98.91 99.51 0.22 100 0.13 2569 2718 2718 109 13 26 1 Staphylococcus_aureus_homd_HMT_550 GCA_000189455.3 HMT-550 O46 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus O46 1 2791410 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/189/455/GCA_000189455.3_ASM18945v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA62081 948563 SAMN02469934 ASM18945v3 Complete Genome SPAdes v. 3.9.1 2013-12-19T13:09:44.073 Illumina GAII INRA 177.0x 98.9 GCF_000189455.2 2562 2745 2745 118 13 51 1 Staphylococcus_aureus_homd_HMT_550 GCA_000190695.1 HMT-582 ATCC 33394 Named Cultivated Oral (Abundance: Medium) HMT-582 Kingella denitrificans ATCC 33394 12 2220455 54.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/190/695/GCA_000190695.1_ASM19069v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_A;s__Kingella_A denitrificans PRJNA53051 888741 SAMN00253309 ASM19069v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T00:05:05.527 not determined 454 Baylor College of Medicine 37.8x 99.99 99.5 0.23 99.96 0.25 GCF_000190695.1 AEWV01 2148 2209 2209 8 3 49 1 Kingella_denitrificans_homd_HMT_582 GCA_000191065.1 HMT-685 DSM 16608 Named Cultivated Oral (Abundance: Low) HMT-685 Prevotella multiformis DSM 16608 25 3057407 51.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/065/GCA_000191065.1_ASM19106v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella multiformis PRJNA53055 888743 SAMN00253307 ASM19106v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-26T23:48:05.503 not determined 454 Baylor College of Medicine 28.8x 99.21 0 98.11 0.02 GCF_000191065.1 AEWX01 2458 2519 2519 8 3 49 1 Prevotella_multiformis_homd_HMT_685 GCA_000191085.1 HMT-758 SK353 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK353 3 2301077 43.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/085/GCA_000191085.1_ASM19108v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_H PRJNA53171 888815 SAMN00253310 ASM19108v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T00:55:06.010 not determined 454 Baylor College of Medicine 46.2x 95.14 100 0.19 99.99 0.08 GCF_000191085.1 AEWY01 2201 2300 2300 48 3 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000191105.1 HMT-758 SK405 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK405 9 2298289 43.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/105/GCA_000191105.1_ASM19110v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA53175 888817 SAMN00253311 ASM19110v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T01:04:05.687 not determined 454 Baylor College of Medicine 47.1x 97.8 100 0 99.99 0.09 GCF_000191105.1 AEWZ01 2196 2275 2275 28 3 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000191125.1 HMT-758 SK678 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK678 4 2298720 43.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/125/GCA_000191125.1_ASM19112v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA53179 888819 SAMN00253312 ASM19112v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T01:13:05.977 not determined 454 Baylor College of Medicine 48.7x 97.59 100 0 99.99 0.02 GCF_000191125.1 AEXA01 2185 2254 2254 30 3 35 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000191405.1 HMT-718 ATCC 33392 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae ATCC 33392 10 2124757 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/405/GCA_000191405.1_ASM19140v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA53197 888828 SAMN00253308 ASM19140v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-26T23:58:05.777 not determined 454 Baylor College of Medicine 35.4x 99.99 99.89 0 100 0.05 GCF_000191405.1 AEWU01 1971 2079 2079 55 4 48 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_000191425.1 HMT-669 G2136 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis G2136 1 2184862 51.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/425/GCA_000191425.1_ASM19142v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA61085 935599 SAMN02604201 ASM19142v1 Complete Genome 2014-01-30T15:13:17.993 University of Maryland School of Medicine 97.4 99.83 0.21 99.99 0 GCF_000191425.1 2052 2142 2142 18 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_000191465.1 HMT-669 M01-240149 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M01-240149 1 2223518 51.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/465/GCA_000191465.1_ASM19146v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA61069 935591 SAMN02604198 ASM19146v1 Complete Genome 2014-01-30T15:13:17.840 University of Maryland School of Medicine 97.3 99.75 0.19 99.99 0.01 GCF_000191465.1 2047 2139 2139 20 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_000191485.1 HMT-669 M01-240355 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M01-240355 1 2287777 51.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/485/GCA_000191485.1_ASM19148v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA61063 935588 SAMN02604196 ASM19148v1 Complete Genome 2014-01-30T15:13:17.740 University of Maryland School of Medicine 97.34 99.75 0.19 99.99 0 GCF_000191485.1 2103 2212 2212 36 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_000191505.1 HMT-669 M04-240196 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M04-240196 1 2250449 51.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/505/GCA_000191505.1_ASM19150v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA61073 935593 SAMN02604199 ASM19150v1 Complete Genome 2014-01-30T15:13:17.893 University of Maryland School of Medicine 97.33 99.75 0.19 100 0.02 GCF_000191505.1 2075 2169 2169 21 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_000191525.1 HMT-669 NZ-05/33 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis NZ-05/33 1 2248966 51.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/525/GCA_000191525.1_ASM19152v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA61065 935589 SAMN02604197 ASM19152v1 Complete Genome 2014-01-30T15:13:17.787 University of Maryland School of Medicine 97.3 99.56 0.19 100 0.01 GCF_000191525.1 2087 2179 2179 20 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_000191725.2 HMT-294 ACS-065-V-Col13 Named** Cultivated Vaginal (Abundance: Scarce) HMT-294 Anaerococcus vaginimassiliensis ACS-065-V-Col13 35 1697099 32.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/725/GCA_000191725.2_ASM19172v2 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus vaginimassiliensis PRJNA52025 879305 SAMN00138207 ASM19172v2 Contig Newbler v. 2.3 2010-11-23T10:08:03.803 not determined 454 J. Craig Venter Institute 31.0x 82.32 GCF_000191725.1 AEXM01 1621 1693 1693 21 5 45 1 Anaerococcus_vaginimassiliensis_homd_HMT_294 GCA_000191765.2 HMT-291 CRIS 18C-A Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola CRIS 18C-A 121 3177783 49.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/765/GCA_000191765.2_ASM19176v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA61825 944557 SAMN00195201 ASM19176v1 Contig Newbler v. 2.3 2011-01-21T14:33:03.697 not determined 454 J. Craig Venter Institute 31.0x 98.02 GCF_000191765.1 AEXO01 2586 2647 2647 7 4 49 1 Prevotella_denticola_homd_HMT_291 GCA_000191785.1 HMT-586 DSM 10105 Named Cultivated Oral (Abundance: Scarce) HMT-586 Parascardovia denticolens DSM 10105 1 1891448 58.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/785/GCA_000191785.1_ASM19178v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia denticolens PRJNA50509 864564 SAMN02299441 ASM19178v1 Chromosome Newbler Assembler v. 2.3.10192009 2013-08-02T12:07:40.880 not determined oral cavity 454 Baylor College of Medicine 99.8x 99.99 99.77 0 99.94 0.21 GCF_000191785.1 AEON01 1522 1577 1577 5 4 45 1 Parascardovia_denticolens_homd_HMT_586 GCA_000191825.1 HMT-584 F0402 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola F0402 12 2742634 37.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/191/825/GCA_000191825.1_Trep_dent_F0402_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA42551 699187 SAMN02463845 Trep_dent_F0402_V1 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:45.850 not determined missing 454 Broad Institute 20.0x 97.5 100 0 95.89 0.2 GCF_000191825.1 ADEC01 2628 2684 2684 7 4 44 1 Treponema_denticola_homd_HMT_584 GCA_000192185.1 HMT-758 SK72 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK72 6 2376010 43.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/192/185/GCA_000192185.1_ASM19218v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_H PRJNA53159 888809 SAMN00253313 ASM19218v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T13:56:08.217 not determined 454 Baylor College of Medicine 30.1x 95.28 100 0 99.99 0.08 GCF_000192185.1 AEXV01 2286 2351 2351 26 3 35 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000192205.1 HMT-758 SK115 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK115 5 2346734 43.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/192/205/GCA_000192205.1_ASM19220v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_W PRJNA53161 888810 SAMN00253314 ASM19220v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T14:02:06.153 not determined 454 Baylor College of Medicine 34.5x 95.31 100 0.19 99.98 0.07 GCF_000192205.1 AEXW01 2229 2315 2315 47 3 35 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000192225.1 HMT-338 F0234 Unnamed Cultivated Oral (Abundance: Medium) HMT-338 Capnocytophaga sp. HMT-338 F0234 29 2548422 38.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/192/225/GCA_000192225.1_ASM19222v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sp000192225 PRJNA53023 888059 SAMN00253971 ASM19222v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-29T15:32:24.640 not determined 454 Baylor College of Medicine 38.0x 100 0 99.95 0.22 GCF_000192225.1 AEXX01 2335 2391 2391 7 3 45 1 Capnocytophaga_sp_HMT_338_homd_HMT_338 GCA_000192245.1 HMT-758 SK150 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK150 5 2324334 43.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/192/245/GCA_000192245.1_ASM19224v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_M PRJNA53163 888811 SAMN02415615 ASM19224v1 Scaffold Newbler Assembler v. 2.3-04192010 2013-11-20T14:49:17.977 not determined 454 Baylor College of Medicine 24.9x 95.12 100 0 99.99 0.08 GCF_000192245.1 AEXY01 2229 2297 2297 30 3 34 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000192275.1 HMT-758 SK160 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK160 5 2333870 43.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/192/275/GCA_000192275.1_ASM19227v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA53165 888812 SAMN00253316 ASM19227v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T14:32:06.670 not determined 454 Baylor College of Medicine 41.8x 95.85 100 0 99.98 0.07 GCF_000192275.1 AEXZ01 2213 2294 2294 28 3 49 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000192905.2 HMT-833 7169 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 7169 35 1903901 41.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/192/905/GCA_000192905.2_ASM19290v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA49907 857581 SAMN02393785 ASM19290v2 Contig Newbler v. 2.3 2013-11-05T15:57:11.667 454 Titanium Center for Genomic Sciences 182.3x 99.2 GCF_000192905.1 AERC01 1750 1807 1807 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_000193025.2 HMT-833 BC8 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis BC8 32 1912542 41.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/193/025/GCA_000193025.2_ASM19302v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA49921 857574 SAMN02393791 ASM19302v2 Contig Newbler v. 2.0.01.14 2013-11-05T15:57:12.043 454 Ti08/12/09AA Center for Genomic Sciences 44.4x 99.19 GCF_000193025.1 AERJ01 1755 1811 1811 8 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_000193045.2 HMT-833 CO72 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis CO72 25 1947635 41.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/193/045/GCA_000193045.2_ASM19304v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA49923 857573 SAMN02393792 ASM19304v2 Contig Newbler v. 2.0.01.14 2013-11-05T15:57:12.093 454 Ti08/12/09AA Center for Genomic Sciences 37.0x 99.1 GCF_000193045.1 AERK01 1810 1868 1868 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_000193065.2 HMT-833 101P30B1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 101P30B1 26 1866092 41.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/193/065/GCA_000193065.2_ASM19306v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA49925 857572 SAMN02393793 ASM19306v2 Contig Newbler v. 2.0.01.14 2013-11-05T15:57:12.157 454 Ti08/12/09AA Center for Genomic Sciences 33.4x 99.12 GCF_000193065.1 AEPC01 1731 1788 1788 11 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_000193395.1 HMT-291 F0289 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola F0289 1 2937589 50.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/193/395/GCA_000193395.1_ASM19339v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA49293 767031 SAMN00031760 ASM19339v1 Complete Genome Celera Assembler v. 6.1 2010-08-06T11:51:03.853 not determined 454; Illumina J. Craig Venter Institute 43.0x 98.17 99.32 0 99.95 0.37 GCF_000193395.1 2349 2421 2421 8 12 51 1 Prevotella_denticola_homd_HMT_291 GCA_000193415.2 HMT-921 V453 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-921 Paenibacillus glucanolyticus V453 56 6385945 48.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/193/415/GCA_000193415.2_ASM19341v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus glucanolyticus PRJNA43739 715225 SAMN02471038 ASM19341v1 Contig Newbler Assembler v. 1.0.53; ~Velvet v. 0.7.28 2013-12-19T13:34:40.837 454; Illumina Tauber Initiative 289.0x GCF_000193415.1 ADHJ01 6225 6359 6359 71 3 59 1 Paenibacillus_glucanolyticus_homd_HMT_921 GCA_000193735.2 HMT-764 4320 Named Cultivated Oral (Abundance: High) HMT-764 Neisseria sicca 4320 169 2519401 50.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/193/735/GCA_000193735.2_ASM19373v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sicca_E PRJNA60861 933266 SAMN02471879 ASM19373v2 Contig Newbler Assembler v. 2.0.00.20 2013-12-19T13:43:40.540 454 University of Maryland, College Park 95.0x 94.05 GCF_000193735.1 AEPF01 2347 2416 2416 16 3 49 1 Neisseria_sicca_homd_HMT_764 GCA_000193775.2 HMT-737 NS342 Named Cultivated Oral (Abundance: Scarce) HMT-737 Neisseria polysaccharea NS342 288 2169528 51.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/193/775/GCA_000193775.2_ASM19377v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria polysaccharea PRJNA60865 933269 SAMN02471878 ASM19377v1 Scaffold Newbler Assembler v. 2.0.00.20 2013-12-19T13:43:40.487 454 University of Maryland, College Park 95.0x 94.94 99.54 0 99.97 0 GCF_000193775.1 AEPH01 2008 2074 2074 16 3 46 1 Neisseria_polysaccharea_homd_HMT_737 GCA_000193795.2 HMT-649 NS19 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica NS19 132 2138393 52.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/193/795/GCA_000193795.2_ASM19379v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica_A PRJNA60867 933280 SAMN02471876 ASM19379v2 Contig Newbler Assembler v. 2.0.00.20 2013-12-19T13:43:40.360 454 University of Maryland, College Park 95.0x 94.06 GCF_000193795.1 AEPI01 2053 2121 2121 17 3 47 1 Neisseria_lactamica_homd_HMT_649 GCA_000194765.1 HMT-716 BD-II Named Cultivated Environmental -Food (Abundance: Scarce) HMT-716 Lacticaseibacillus paracasei BD-II 2 3127288 46.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/194/765/GCA_000194765.1_ASM19476v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei PRJNA64431 1597 SAMN02603876 ASM19476v1 Complete Genome 2014-01-30T14:54:04.170 China homemade koumiss State Key Laboratory of Dairy Biotechnology, Technology Center of Bright Dairy & Food Co., Ltd,China 98.65 99.46 0 99.93 0.33 GCF_000194765.1 3066 3175 3175 33 15 60 1 Lacticaseibacillus_paracasei_homd_HMT_716 GCA_000194925.1 HMT-013 ATCC BAA-1200 Named Cultivated Oral (Abundance: Medium) HMT-013 Neisseria bacilliformis ATCC BAA-1200 13 2470575 60.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/194/925/GCA_000194925.1_ASM19492v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria bacilliformis PRJNA53053 888742 SAMN00253995 ASM19492v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-30T08:06:41.800 not determined 454 Baylor College of Medicine 33.9x 99.97 98.93 0.23 99.99 0 GCF_000194925.1 AFAY01 2251 2375 2375 70 3 50 1 Neisseria_bacilliformis_homd_HMT_013 GCA_000194945.1 HMT-758 SK1 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK1 7 2280483 43.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/194/945/GCA_000194945.1_ASM19494v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA53155 888807 SAMN00253318 ASM19494v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T14:58:06.453 not determined 454 Baylor College of Medicine 40.6x 99.96 100 0 99.96 0.05 GCF_000194945.1 AFAZ01 2179 2246 2246 28 3 35 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000194965.1 HMT-758 SK1057 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK1057 5 2348778 43.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/194/965/GCA_000194965.1_ASM19496v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA53183 888821 SAMN00253315 ASM19496v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T14:09:05.967 not determined 454 Baylor College of Medicine 38.5x 95.21 100 0 99.91 0.08 GCF_000194965.1 AFBA01 2253 2333 2333 27 3 49 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000194985.1 HMT-843 DSM 19965 Named Cultivated Vaginal (Abundance: Medium) HMT-843 Dialister micraerophilus DSM 19965 7 1281836 36.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/194/985/GCA_000194985.1_ASM19498v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister micraerophilus PRJNA53029 888062 SAMN00260258 ASM19498v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-26T10:47:05.717 not determined 454 Baylor College of Medicine 67.8x 99.91 0 99.56 0.48 GCF_000194985.1 AFBB01 1198 1271 1271 23 3 46 1 Dialister_micraerophilus_homd_HMT_843 GCA_000195005.1 HMT-535 ATCC 11116 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius ATCC 11116 22 1963583 39.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/195/005/GCA_000195005.1_ASM19500v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA53049 888728 SAMN00260259 ASM19500v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-26T11:05:05.410 not determined 454 Baylor College of Medicine 46.8x 99.98 99.34 0 99.99 0.18 GCF_000195005.1 AFBC01 1917 2008 2008 43 4 43 1 Haemophilus_aegyptius_homd_HMT_535 GCA_000195045.1 HMT-758 SK408 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK408 6 2398571 42.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/195/045/GCA_000195045.1_ASM19504v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA53177 888818 SAMN00253319 ASM19504v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T15:08:18.400 not determined 454 Baylor College of Medicine 39.5x 96.9 100 0 99.99 0.07 GCF_000195045.1 AFBE01 2304 2391 2391 35 3 48 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000195125.1 HMT-758 SK1058 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK1058 4 2352829 43.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/195/125/GCA_000195125.1_ASM19512v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA53185 888822 SAMN00253321 ASM19512v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T15:52:06.110 not determined 454 Baylor College of Medicine 25.8x 98.02 99.81 0 99.99 0.1 GCF_000195125.1 AFBF01 2262 2332 2332 30 3 36 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000195595.1 HMT-170 F0386 Unnamed Cultivated Oral (Abundance: High) HMT-170 Actinomyces sp. HMT-170 F0386 76 3135144 67.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/195/595/GCA_000195595.1_ASM19559v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp000195595 PRJNA48493 762963 SAMN00189093 ASM19559v1 Scaffold Velvet v. 0.7.57 2010-12-23T11:17:03.747 not determined Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 44.8x 99.76 0.47 99.96 0.23 GCF_000195595.1 AFBL01 2612 2684 2684 15 2 53 2 Actinomyces_sp_HMT_170_homd_HMT_170 GCA_000195855.1 HMT-823 TN Named Cultivated Pathogen (Abundance: Scarce) HMT-823 Mycobacterium leprae TN 1 3268203 57.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/195/855/GCA_000195855.1_ASM19585v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium leprae PRJNA90 272631 SAMEA1705921 ASM19585v1 Complete Genome 2010-11-05T17:16:38.746 Sanger Institute 87.88 0.33 99.99 0.01 GCF_000195855.1 3982 4053 4053 21 3 46 1 Mycobacterium_leprae_homd_HMT_823 GCA_000195955.2 HMT-822 H37Rv Named Cultivated Pathogen (Abundance: Scarce) HMT-822 Mycobacterium tuberculosis H37Rv 1 4411532 65.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/195/955/GCA_000195955.2_ASM19595v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium tuberculosis PRJNA224 83332 SAMEA3138326 ASM19595v2 Complete Genome 2014-11-21T08:58:35.217 Sanger Institute 99.99 99.94 0 100 0.75 GCF_000195955.2 4069 4126 0 0 3 53 1 Mycobacterium_tuberculosis_homd_HMT_822 GCA_000196295.1 HMT-649 020-06 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica 020-06 1 2220606 52.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/196/295/GCA_000196295.1_ASM19629v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA13472 489653 SAMEA3138337 ASM19629v1 Complete Genome 2014-11-21T08:58:38.207 Sanger Institute 97.21 99.92 0 100 0.07 GCF_000196295.1 2027 2129 2129 28 12 61 1 Neisseria_lactamica_homd_HMT_649 GCA_000196555.1 HMT-862 JCM 1217 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-862 Bifidobacterium longum JCM 1217 1 2385164 60.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/196/555/GCA_000196555.1_ASM19655v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum PRJDA32047 565042 SAMD00060951 ASM19655v1 Complete Genome 2016-09-28T01:00:51.846 University of Tokyo, Graduate School of Frontier Sciences 99.99 100 0 99.97 0.34 GCF_000196555.1 1946 2045 2045 13 8 77 1 Bifidobacterium_longum_homd_HMT_862 GCA_000196595.1 HMT-734 TCH8431/19A Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TCH8431/19A 1 2088772 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/196/595/GCA_000196595.1_ASM19659v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA34659 525381 SAMN00002223 ASM19659v1 Complete Genome Newbler Assembler v. 1.1.03.24 2009-04-11T06:36:02.860 not determined 454 Baylor College of Medicine 58.0x 98.61 99.42 0.2 100 0.19 GCF_000196595.1 2063 2214 2214 80 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000197875.1 HMT-535 F3031 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius F3031 1 1985832 38.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/197/875/GCA_000197875.1_ASM19787v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA50729 866630 SAMEA3138342 ASM19787v1 Complete Genome 2014-11-21T08:58:39.460 The Wellcome Trust Sanger Institute 96.94 99.67 0 100 0.43 GCF_000197875.1 1942 2061 2061 41 19 58 1 Haemophilus_aegyptius_homd_HMT_535 GCA_000199675.1 HMT-995 UNI-1 Named Cultivated Taxonomic Reference (Abundance: Scarce) HMT-995 Anaerolinea thermophila UNI-1 1 3532378 53.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/199/675/GCA_000199675.1_ASM19967v1 d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Anaerolinea;s__Anaerolinea thermophila PRJNA60099 926569 SAMD00061114 ASM19967v1 Complete Genome 2016-09-28T01:03:00.400 Sanger National Institute of Technology and Evaluation 16.0x 93.64 4.73 99.97 1.48 GCF_000199675.1 3154 3230 3230 17 6 52 1 GCA_000200475.1 HMT-535 F3047 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius F3047 1 2007018 38.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/200/475/GCA_000200475.1_ASM20047v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEA61001 935897 SAMEA2272570 ASM20047v1 Complete Genome 2013-12-20T12:43:39.643 Wellcome Trust Sanger insititute 96.99 99.67 0 99.98 0.05 GCF_000200475.1 1979 2100 2100 44 19 57 1 Haemophilus_aegyptius_homd_HMT_535 GCA_000204235.2 HMT-193 P08 Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum P08 22 2623290 59.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/204/235/GCA_000204235.2_ASM20423v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJNA64551 999892 SAMN02471992 ASM20423v2 Contig Newbler version v. 2.3 2013-12-19T13:52:15.686 454 Bumgarner laboratory, Department of Microbiology, University of Washington 21.0x 99.95 GCF_000204235.1 AFAM01 2558 2633 2633 24 3 47 1 Cutibacterium_modestum_homd_HMT_193 GCA_000204335.2 HMT-757 M325 Named Cultivated Oral (Abundance: Medium) HMT-757 Gemella sanguinis M325 5 1756105 29.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/204/335/GCA_000204335.2_Geme_sang_M325_V2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella sanguinis PRJNA38783 562983 SAMN02595333 Geme_sang_M325_V2 Contig Newbler v. 2.3-PostRelease-11/19/2009 2014-01-23T10:15:15.393 454 Broad Institute 31.0x 96.25 97.51 0 99.94 0.13 GCF_000204335.2 ACRY02 1673 1755 1755 28 10 43 1 Gemella_sanguinis_homd_HMT_757 GCA_000204355.1 HMT-434 M341 Named Cultivated Oral (Abundance: High) HMT-434 Gemella haemolysans clade-434 M341 27 2053439 31.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/204/355/GCA_000204355.1_Geme_haem_M341_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_A PRJNA38763 562981 SAMN02595331 Geme_haem_M341_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2014-01-23T10:15:15.130 454 Broad Institute 51.0x 87.78 98.28 0 99.97 0.12 GCF_000204355.1 ACRO01 1900 1983 0 32 9 41 1 Gemella_haemolysans_clade_434_homd_HMT_434 GCA_000204355.1 HMT-434 M341 Named Cultivated Oral (Abundance: High) HMT-434 Gemella haemolysans clade-434 M341 27 2053439 31.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/204/355/GCA_000204355.1_Geme_haem_M341_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_A PRJNA38763 562981 SAMN02595331 Geme_haem_M341_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2014-01-23T10:15:15.130 454 Broad Institute 51.0x 87.78 98.28 0 99.97 0.12 GCF_000204355.1 ACRO01 1900 1983 0 32 9 41 1 Gemella_haemolysans_HMT_434_626 GCA_000204475.1 HMT-758 SK1087 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK1087 7 2315021 43.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/204/475/GCA_000204475.1_ASM20447v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_R PRJNA53189 888824 SAMN00253322 ASM20447v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T15:58:05.680 not determined 454 Baylor College of Medicine 27.1x 95.1 100 0.37 99.99 0.05 GCF_000204475.1 AFDP01 2232 2308 2308 26 3 46 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000204665.1 HMT-550 T0131 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus T0131 1 2913900 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/204/665/GCA_000204665.1_ASM20466v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA65323 1006543 SAMN02603905 ASM20466v1 Complete Genome 2014-01-30T14:54:06.293 China: Tianjin 87 year-old patient TEDA School of Biological Sciences and Biotechnology, Nankai University 99.51 99.51 0.08 100 0.08 GCF_000204665.1 2708 2901 2901 121 16 55 1 Staphylococcus_aureus_homd_HMT_550 GCA_000208405.1 HMT-151 ATCC 35185 Named Cultivated Oral (Abundance: Medium) HMT-151 Selenomonas sputigena ATCC 35185 1 2568361 57.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/208/405/GCA_000208405.1_ASM20840v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas;s__Selenomonas sputigena PRJNA51247 546271 SAMN00713607 ASM20840v1 Complete Genome Newbler v. 2.3 2011-08-24T11:41:13.280 Missing subgingival sulcus 454/Illumina US DOE Joint Genome Institute (JGI-PGF) 30.0x 99.99 100 0.63 99.99 0.07 GCF_000208405.1 2280 2375 2375 29 12 53 1 Selenomonas_sputigena_homd_HMT_151 GCA_000209465.1 HMT-441 F0167 Unnamed Cultivated Oral (Abundance: Low) HMT-441 Lachnoanaerobaculum sp. HMT-441 F0167 70 3288100 35.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/209/465/GCA_000209465.1_Lach_bact_F0167_V1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum sp000209465 PRJNA42531 575593 SAMN02595376 Lach_bact_F0167_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2014-01-23T10:15:18.853 454 Broad Institute 34.0x 96.2 0 95.83 0.08 GCF_000209465.1 ADDS01 3035 3113 0 22 4 51 1 Lachnoanaerobaculum_sp_HMT_441_homd_HMT_441 GCA_000209735.1 HMT-607 PG18 Named Cultivated Oral (Abundance: Scarce) HMT-607 Mycoplasmopsis fermentans PG18 1 1004014 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/209/735/GCA_000209735.1_ASM20973v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis;s__Mycoplasmopsis fermentans PRJDA28473 496833 SAMD00060938 ASM20973v1 Chromosome 2016-09-28T01:00:41.966 M Bio Technology Incorporation 100 0 99.59 0.63 GCF_000209735.1 1742 1788 1788 5 4 36 1 Mycoplasmopsis_fermentans_homd_HMT_607 GCA_000209935.1 HMT-960 DSM 17629 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-960 Agathobacter rectalis DSM 17629 1 3344951 42.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/209/935/GCA_000209935.1_ASM20993v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__Agathobacter rectalis PRJNA39159 657318 SAMEA3138356 ASM20993v1 Chromosome 2014-11-21T08:58:41.206 MetaHIT 98.28 99.28 1.21 99.99 0.19 GCF_000209935.1 3107 3242 3242 88 2 44 1 Agathobacter_rectalis_homd_HMT_960 GCA_000210315.1 HMT-550 ED133 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus ED133 1 2832478 32.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/210/315/GCA_000210315.1_ASM21031v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA41277 685039 SAMN02604166 ASM21031v1 Complete Genome 2014-01-30T15:13:15.750 University of Edinburgh 98.91 99.49 0.08 100 0.43 GCF_000210315.1 2649 2840 2840 114 16 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_000210375.1 HMT-229 NIES-39 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-229 Arthrospira platensis NIES-39 1 6788435 45.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/210/375/GCA_000210375.1_ASM21037v1 d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira;s__Limnospira platensis PRJDA42161 696747 SAMD00060970 ASM21037v1 Chromosome 2016-09-28T01:01:04.725 National Institute of Technology and Evaluation 99.61 99.13 0 99.99 0.1 GCF_000210375.1 6302 6741 6741 387 4 47 1 Arthrospira_platensis_homd_HMT_229 GCA_000210475.1 HMT-574 ETEC H10407 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-574 Escherichia coli ETEC H10407 5 5325888 50.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/210/475/GCA_000210475.1_ASM21047v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli PRJEA42749 316401 SAMEA2272237 ASM21047v1 Complete Genome 2013-12-20T12:43:12.380 Wellcome Trust Sanger Institute 98.59 99.97 0.48 100 0.16 GCF_000210475.1 5112 5531 5531 304 22 92 1 Escherichia_coli_homd_HMT_574 GCA_000210715.1 HMT-363 SGP1 Named Cultivated Oral (Abundance: Low) HMT-363 Fretibacterium fastidiosum SGP1 1 2728333 66.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/210/715/GCA_000210715.1_ASM21071v1 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Aminobacteriaceae;g__Fretibacterium;s__Fretibacterium fastidiosum PRJNA45959 651822 SAMEA3138377 ASM21071v1 Chromosome 2014-11-21T08:58:42.530 metaHIT 99.98 88.14 0.62 89.14 1.11 GCF_000210715.1 2412 0 0 18 0 43 1 Fretibacterium_fastidiosum_homd_HMT_363 GCA_000210875.1 HMT-641 10810 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 10810 1 1981535 38.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/210/875/GCA_000210875.1_ASM21087v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA50409 862964 SAMEA3138383 ASM21087v1 Complete Genome 2014-11-21T08:58:42.973 The Wellcome Trust Sanger Institute 97.34 99.45 0 100 1.06 GCF_000210875.1 1902 2018 2018 38 20 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_000210895.1 HMT-718 T3T1 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae T3T1 1 2086875 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/210/895/GCA_000210895.1_ASM21089v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_A PRJNA50411 862965 SAMEA3138384 ASM21089v1 Complete Genome 2014-11-21T08:58:43.030 The Wellcome Trust Sanger Institute 94.07 99.89 0 100 0.03 GCF_000210895.1 1971 2091 2091 43 19 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_000210935.1 HMT-734 INV200 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae INV200 1 2093317 39.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/210/935/GCA_000210935.1_ASM21093v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA50731 869216 SAMEA3138386 ASM21093v1 Complete Genome 2014-11-21T08:58:43.163 The Wellcome Trust Sanger Institute 98.62 99.81 0.63 100 0.2 GCF_000210935.1 2039 2187 2187 77 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000210955.1 HMT-734 OXC141 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae OXC141 1 2036867 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/210/955/GCA_000210955.1_ASM21095v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA50733 869215 SAMEA3138387 ASM21095v1 Complete Genome 2014-11-21T08:58:43.230 The Wellcome Trust Sanger Institute 98.78 99.82 0.2 100 0.11 GCF_000210955.1 2036 2177 2177 70 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000210975.1 HMT-734 INV104 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae INV104 1 2142122 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/210/975/GCA_000210975.1_ASM21097v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA50735 869269 SAMEA3138388 ASM21097v1 Complete Genome 2014-11-21T08:58:43.313 The Wellcome Trust Sanger Institute 98.97 99.6 0.21 100 0.24 GCF_000210975.1 2136 2285 2285 78 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000210995.1 HMT-734 SNP034156 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SNP034156 1 2024476 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/210/995/GCA_000210995.1_ASM21099v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA50793 869303 SAMEA3138389 ASM21099v1 Complete Genome 2014-11-21T08:58:43.367 Wellcome Trust Sanger Institute 98.77 99.82 0.2 100 0.15 GCF_000210995.1 2014 2155 2155 70 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000211015.1 HMT-734 SNP034183 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SNP034183 1 2037254 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/211/015/GCA_000211015.1_ASM21101v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA50795 869304 SAMEA3138390 ASM21101v1 Complete Genome 2014-11-21T08:58:43.443 Wellcome Trust Sanger Institute 98.77 99.82 0.2 100 0.1 GCF_000211015.1 2044 2183 2183 68 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000211035.2 HMT-734 SNP994038 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SNP994038 1 2026239 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/211/035/GCA_000211035.2_ASM21103v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA50799 869306 SAMEA3138391 ASM21103v2 Complete Genome 2014-11-21T08:58:43.500 Wellcome Trust Sanger Institute 98.79 GCF_000211035.1 2029 2166 2166 66 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000211055.2 HMT-734 SNP994039 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SNP994039 1 2026505 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/211/055/GCA_000211055.2_ASM21105v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA50801 869307 SAMEA3138392 ASM21105v2 Complete Genome 2014-11-21T08:58:43.553 Wellcome Trust Sanger Institute 98.79 GCF_000211055.1 2030 2166 2166 65 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000211075.1 HMT-734 SPN032672 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SPN032672 1 2131190 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/211/075/GCA_000211075.1_ASM21107v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA50809 869311 SAMEA3138393 ASM21107v1 Complete Genome 2014-11-21T08:58:43.613 Wellcome Trust Sanger Institute 98.94 99.6 0.21 100 0.18 GCF_000211075.1 2148 2296 2296 77 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000211095.1 HMT-734 SPN033038 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SPN033038 1 2133496 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/211/095/GCA_000211095.1_ASM21109v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA50811 869312 SAMEA3138394 ASM21109v1 Complete Genome 2014-11-21T08:58:43.680 Wellcome Trust Sanger Institute 98.94 99.21 0.21 100 1.09 GCF_000211095.1 2162 2310 2310 77 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000211375.1 HMT-881 NRRL B-30929 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-881 Lentilactobacillus buchneri NRRL B-30929 4 2588309 44.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/211/375/GCA_000211375.1_ASM21137v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri PRJNA29003 511437 SAMN00713605 ASM21137v1 Complete Genome Newbler v. 2.3 2011-08-24T11:41:13.116 Missing Sanger/454/Illumina US DOE Joint Genome Institute 30.0x 99.73 99.06 0 100 0.08 GCF_000211375.1 2504 2624 2624 40 15 64 1 Lentilactobacillus_buchneri_homd_HMT_881 GCA_000212375.1 HMT-547 DSM 20707 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-547 Porphyromonas asaccharolytica DSM 20707 1 2186370 52.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/212/375/GCA_000212375.1_ASM21237v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas asaccharolytica PRJNA51745 879243 SAMN00713611 ASM21237v1 Complete Genome Newbler v. 2.3 2011-08-24T11:41:13.590 Missing empyema 454/Illumina US DOE Joint Genome Institute (JGI-PGF) 30.0x 99.92 0 99.95 0.07 GCF_000212375.1 1727 1806 1806 25 6 47 1 Porphyromonas_asaccharolytica_homd_HMT_547 GCA_000212515.2 HMT-734 GA47901 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA47901 6 2086317 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/212/515/GCA_000212515.2_ASM21251v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48915 760861 SAMN00792680 ASM21251v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Georgia 454 GS FLX Titanium Institute for Genome Sciences 35.0x 98.91 99.14 0.21 99.98 0.06 GCF_000212515.1 AFGR01 2099 2257 2257 78 16 63 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000212535.2 HMT-734 GA47368 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA47368 8 2177227 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/212/535/GCA_000212535.2_ASM21253v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48859 760834 SAMN00792663 ASM21253v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Georgia 454 GS FLX Titanium Institute for Genome Sciences 35.0x 98.52 99.18 0.21 99.99 0.45 GCF_000212535.1 AFGS01 2232 2403 2403 93 17 60 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000212555.2 HMT-734 GA41317 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA41317 6 2090801 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/212/555/GCA_000212555.2_ASM21255v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48779 760810 SAMN00792779 ASM21255v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Georgia 454 GS FLX Titanium Institute for Genome Sciences 35.0x 98.59 99.42 0.2 99.97 0.18 GCF_000212555.1 AFGT01 2103 2252 2252 71 18 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000212795.1 HMT-758 SK1059 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK1059 9 2428274 42.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/212/795/GCA_000212795.1_ASM21279v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA53187 888823 SAMN00253969 ASM21279v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-29T15:02:06.040 not determined 454 Baylor College of Medicine 24.1x 95.34 99.63 0 99.99 0.07 GCF_000212795.1 AFFM01 2334 2405 2405 32 3 35 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000212815.1 HMT-758 SK49 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK49 5 2279404 43.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/212/815/GCA_000212815.1_ASM21281v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_C PRJNA53157 888808 SAMN00253323 ASM21281v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T16:10:04.600 not determined 454 Baylor College of Medicine 14.9x 94.9 99.63 0 99.99 0.1 GCF_000212815.1 AFFO01 2213 2307 2307 43 3 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000212835.1 HMT-758 SK1056 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK1056 3 2376689 43.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/212/835/GCA_000212835.1_ASM21283v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_X PRJNA53181 888820 SAMN00253325 ASM21283v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T16:33:06.207 not determined 454 Baylor College of Medicine 25.5x 95.25 99.63 0 99.98 0.17 GCF_000212835.1 AFFL01 2295 2367 2367 33 3 35 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000212855.1 HMT-758 SK355 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK355 6 2370432 43.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/212/855/GCA_000212855.1_ASM21285v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_A PRJNA53173 888816 SAMN00253324 ASM21285v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-27T16:18:06.497 not determined 454 Baylor College of Medicine 30.8x 94.07 100 0 99.99 0.08 GCF_000212855.1 AFFN01 2247 2328 2328 30 3 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000213155.1 HMT-530 266 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes 266 1 2494578 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/213/155/GCA_000213155.1_ASM21315v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA56091 909952 SAMN02603263 ASM21315v1 Complete Genome 2014-01-30T11:19:45.040 pleuropulmonary infection Georg-August-University Goettingen 99.96 99.43 0.03 99.99 0.1 GCF_000213155.1 2313 2393 2393 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_000213295.2 HMT-329 F0087 Named Cultivated Oral (Abundance: High) HMT-329 Capnocytophaga leadbetteri F0087 141 2536778 41.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/213/295/GCA_000213295.2_ASM21329v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga leadbetteri_A PRJNA43127 706436 SAMN00189097 ASM21329v2 Scaffold Newbler v. MapAsmResearch-10/14/2011 2010-12-23T11:26:04.033 not determined oral cavity Illumina Washington University Genome Center 76.1x 94.34 0.24 89.67 0.1 GCF_000213295.2 AFHP02 2152 2197 2197 9 0 35 1 Capnocytophaga_leadbetteri_homd_HMT_329 GCA_000213535.1 HMT-646 ATCC 23330 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae ATCC 23330 20 1975353 48.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/213/535/GCA_000213535.1_ASM21353v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA52985 887327 SAMN00259690 ASM21353v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-15T15:25:07.507 not determined 454 Baylor College of Medicine 52.2x 99.99 98.87 0.23 100 0.09 GCF_000213535.1 AFHS01 1913 1976 1976 11 3 48 1 Kingella_kingae_homd_HMT_646 GCA_000213955.1 HMT-829 HMP9231 Named Cultivated Vaginal (Abundance: High) HMT-829 Gardnerella vaginalis HMP9231 1 1726519 41.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/213/955/GCA_000213955.1_ASM21395v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium vaginale PRJNA51067 1009464 SAMN00100736 ASM21395v1 Complete Genome Celera Assembler v. 6.1 2011-04-22T08:47:27.870 not determined 454 J. Craig Venter Institute 39.0x 98.37 100 0 99.99 0.19 GCF_000213955.1 1319 1386 1386 15 6 45 1 Gardnerella_vaginalis_homd_HMT_829 GCA_000213975.1 HMT-726 DSM 2778 Named Cultivated Oral (Abundance: Low) HMT-726 Centipeda periodontii DSM 2778 10 2761262 56.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/213/975/GCA_000213975.1_ASM21397v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda periodontii PRJNA53025 888060 SAMN00259653 ASM21397v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-14T15:02:07.297 not determined 454 Baylor College of Medicine 38.3x 99.31 0.05 100 0.84 GCF_000213975.1 AFHQ01 2495 2582 2582 22 6 57 2 Centipeda_periodontii_homd_HMT_726 GCA_000213995.1 HMT-634 ATCC 49162 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-634 Enterobacter hormaechei ATCC 49162 14 4860996 55.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/213/995/GCA_000213995.1_ASM21399v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter hormaechei PRJNA53031 888063 SAMN00259689 ASM21399v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-15T14:33:06.627 not determined 454 Baylor College of Medicine 23.3x 99.98 99.87 0.3 100 0.57 GCF_000213995.1 AFHR01 4522 4723 4723 124 4 72 1 Enterobacter_hormaechei_homd_HMT_634 GCA_000214395.1 HMT-023 Cs1-4 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-023 Delftia acidovorans Cs1-4 1 6685842 66.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/214/395/GCA_000214395.1_ASM21439v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas acidovorans PRJNA46303 742013 SAMN00713625 ASM21439v1 Complete Genome Newbler v. 2.3 2011-08-24T11:41:15.183 USA PAH-contaminated soil 454/Illumina US DOE Joint Genome Institute 30.0x 99.85 0.21 100 0.19 GCF_000214395.1 5900 6095 6095 91 15 88 1 Delftia_acidovorans_homd_HMT_023 GCA_000214455.2 HMT-108 F0425 Named Cultivated Oral (Abundance: Medium) HMT-108 Oribacterium asaccharolyticum F0425 1 2518361 43.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/214/455/GCA_000214455.2_ASM21445v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium asaccharolyticum PRJNA53571 904296 SAMN00115116 ASM21445v1 Contig Celera Assembler v. 6.1 2010-10-08T15:22:04.737 not determined 454 J. Craig Venter Institute 23.0x GCF_000214455.1 AFIH01 2273 2351 2351 20 11 46 1 Oribacterium_asaccharolyticum_homd_HMT_108 GCA_000214475.2 HMT-110 F0139 Unnamed Cultivated Oral (Abundance: Medium) HMT-110 Parvimonas sp. HMT-110 F0139 2 1556464 28.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/214/475/GCA_000214475.2_ASM21447v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas sp000214475 PRJNA49295 767100 SAMN00031761 ASM21447v1 Contig Celera Assembler v. 5.42 2010-08-06T11:52:03.903 not determined 454 J. Craig Venter Institute 44.8x 96.25 0.7 97.4 5.06 GCF_000214475.1 AFII01 1643 1731 1731 30 14 43 1 Parvimonas_sp_HMT_110_homd_HMT_110 GCA_000214495.2 HMT-841 UPII 199-6 Named Cultivated Vaginal (Abundance: Medium) HMT-841 Megasphaera lornae UPII 199-6 45 1640787 46.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/214/495/GCA_000214495.2_ASM21449v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera_C;s__Megasphaera_C lornae PRJNA64689 1000568 SAMN00255229 ASM21449v1 Contig Newbler v. 2.5.3 2011-04-07T16:01:08.450 not determined 454 J. Craig Venter Institute 57.4x GCF_000214495.1 AFIJ01 1476 1553 1553 24 3 49 1 Megasphaera_lornae_homd_HMT_841 GCA_000214555.2 HMT-543 SK52 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus SK52 109 1892386 38.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/214/555/GCA_000214555.2_ASM21455v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA64677 1000570 SAMN00621698 ASM21455v1 Contig Newbler v. 2.3 2011-05-26T16:51:00.003 not determined 454 J. Craig Venter Institute 14.8x 99.98 GCF_000214555.1 AFIM01 1841 1931 1931 55 3 31 1 Streptococcus_anginosus_homd_HMT_543 GCA_000215365.2 HMT-071 SK255 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SK255 63 2005180 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/215/365/GCA_000215365.2_ASM21536v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_T PRJNA65581 1005704 SAMN00621703 ASM21536v2 Contig Celera Assembler v. 6.1 2011-05-26T16:52:47.730 not determined 454 J. Craig Venter Institute 11.0x 92.6 99.3 0.2 99.82 1.96 GCF_000215365.1 AFNM01 1971 2103 2103 62 13 56 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000215365.2 HMT-071 SK255 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SK255 63 2005180 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/215/365/GCA_000215365.2_ASM21536v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_T PRJNA65581 1005704 SAMN00621703 ASM21536v2 Contig Celera Assembler v. 6.1 2011-05-26T16:52:47.730 not determined 454 J. Craig Venter Institute 11.0x 92.6 99.3 0.2 99.82 1.96 GCF_000215365.1 AFNM01 1971 2103 2103 62 13 56 1 Streptococcus_oralis_HMT_071_398_707 GCA_000215385.2 HMT-444 SK1076 Named Cultivated Oral (Abundance: High) HMT-444 Streptococcus infantis clade-444 SK1076 30 1744061 39.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/215/385/GCA_000215385.2_ASM21538v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_B PRJNA65583 1005705 SAMN00621697 ASM21538v1 Contig Celera Assembler v. 6.1 2011-05-26T16:50:55.893 not determined 454 J. Craig Venter Institute 14.0x 89.81 GCF_000215385.1 AFNN01 1749 1848 0 33 12 53 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_000215385.2 HMT-444 SK1076 Named Cultivated Oral (Abundance: High) HMT-444 Streptococcus infantis clade-444 SK1076 30 1744061 39.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/215/385/GCA_000215385.2_ASM21538v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_B PRJNA65583 1005705 SAMN00621697 ASM21538v1 Contig Celera Assembler v. 6.1 2011-05-26T16:50:55.893 not determined 454 J. Craig Venter Institute 14.0x 89.81 GCF_000215385.1 AFNN01 1749 1848 0 33 12 53 1 Streptococcus_infantis_clade_444_homd_HMT_444 GCA_000215745.1 HMT-153 KCTC 2190 Named Cultivated Nasal (Abundance: Medium) HMT-153 Klebsiella aerogenes KCTC 2190 1 5280350 54.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/215/745/GCA_000215745.1_ASM21574v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella aerogenes PRJNA66537 1028307 SAMN02603581 ASM21574v1 Complete Genome 2014-01-30T14:21:40.463 Macrogen Inc. 99.99 100 0.39 100 0.14 GCF_000215745.1 4873 5114 5114 130 25 85 1 Klebsiella_aerogenes_homd_HMT_153 GCA_000217615.1 HMT-530 6609 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes 6609 1 2560282 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/217/615/GCA_000217615.1_ASM21761v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA66845 1031709 SAMN02602996 ASM21761v1 Complete Genome 2014-01-30T11:19:23.770 BAYGEN 99.18 100 0 100 0.11 GCF_000217615.1 2362 2443 2443 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_000217655.1 HMT-805 Cuniculi A Named Cultivated Pathogen (Abundance: Scarce) HMT-805 Treponema pallidum Cuniculi A 1 1133390 52.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/217/655/GCA_000217655.1_ASM21765v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema pallidum PRJNA30657 545776 SAMN02603006 ASM21765v1 Complete Genome 2014-01-30T11:19:24.430 Baylor College of Medicine 99.19 0 99.51 0 GCF_000217655.1 976 1030 1030 2 6 45 1 Treponema_pallidum_homd_HMT_805 GCA_000218235.1 HMT-794 DSM 17128 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-794 Hallella multisaccharivorax DSM 17128 3 3388644 48.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/218/235/GCA_000218235.1_ASM21823v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella multisaccharivorax PRJNA41513 688246 SAMN02256517 ASM21823v1 Scaffold Newbler v. 2.3 2013-07-17T10:56:20.796 Japan Subgingival plaque, chronic periodontitis; Japan 454; Illumina US DOE Joint Genome Institute (JGI-PGF) 30.0x 99.98 98.65 0.56 99.92 0.9 GCF_000218235.1 AFJE01 2925 3040 3040 43 14 58 0 Hallella_multisaccharivorax_homd_HMT_794 GCA_000218645.2 HMT-420 21_1A Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis 21_1A 1 2154007 27.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/218/645/GCA_000218645.2_Fusobacterium_sp_21_1A_V3 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA32475 469601 SAMN02463708 Fusobacterium_sp_21_1A_V3 Chromosome Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:29.093 not determined missing 454 Broad Institute 31.0x 96.82 100 0 99.97 0.06 GCF_000218645.2 ADEE02 2019 2102 2102 19 17 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_000218655.1 HMT-420 11_3_2 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis 11_3_2 37 2721023 27.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/218/655/GCA_000218655.1_Fusobacterium_sp_11_3_2_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA39559 457403 SAMN02595348 Fusobacterium_sp_11_3_2_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2014-01-23T10:15:16.876 454 Broad Institute 31.0x 96.56 100 0 100 0.54 GCF_000218655.1 ACUO01 2647 2726 2726 21 10 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_000219475.3 HMT-819 pf01 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-819 Lactobacillus johnsonii pf01 3 1973006 34.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/219/475/GCA_000219475.3_ASM21947v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus sp945980025 PRJNA67469 1037411 SAMN02469597 ASM21947v3 Complete Genome Glimmer v. 3.02 2013-12-19T13:01:18.450 454; PacBio chunlab.Inc 284.9x 96.79 98.8 0 99.99 0.74 1914 2005 2005 50 9 31 1 Lactobacillus_johnsonii_homd_HMT_819 GCA_000219605.1 HMT-477 CGMCC 1.1803 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-477 Stutzerimonas stutzeri CGMCC 1.1803 1 4547930 63.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/219/605/GCA_000219605.1_ASM21960v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;s__Stutzerimonas stutzeri PRJNA68131 316 SAMN02603041 ASM21960v1 Complete Genome 2014-01-30T11:19:27.693 Biotechnology Research Institute, Chinese Academy of Agricultural Sciences 99.99 99.86 0.55 100 0.17 GCF_000219605.1 4191 4332 4332 63 12 65 1 Stutzerimonas_stutzeri_homd_HMT_477 GCA_000220065.2 HMT-056 F0418 Unnamed Cultivated Oral (Abundance: Medium) HMT-056 Streptococcus sp. HMT-056 F0418 1 1943250 39.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/065/GCA_000220065.2_ASM22006v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000220065 PRJNA53569 904294 SAMN00115115 ASM22006v1 Contig Celera Assembler v. 6.1 2010-10-08T15:22:03.957 not determined 454 J. Craig Venter Institute 37.0x GCF_000220065.1 AFQU01 1918 2058 2058 69 12 58 1 Streptococcus_sp_HMT_056_homd_HMT_056 GCA_000220085.2 HMT-677 SK1080 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK1080 34 1943752 40.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/085/GCA_000220085.2_ASM22008v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_K PRJNA66113 1008453 SAMN00621705 ASM22008v2 Contig Celera Assembler v. 6.1 2011-05-26T16:52:56.230 not determined 454 J. Craig Venter Institute 21.0x 93.52 GCF_000220085.1 AFQV01 1815 1962 1962 52 21 73 1 Streptococcus_mitis_homd_HMT_677 GCA_000220215.1 HMT-583 DSM 3688 Named Cultivated Oral (Abundance: Scarce) HMT-583 Hallella dentalis DSM 3688 25 3286469 56.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/215/GCA_000220215.1_ASM22021v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella seregens PRJNA64735 908937 SAMN00262626 ASM22021v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-29T17:23:06.803 not determined 454 Baylor College of Medicine 32.1x 99.99 99.32 0 99.88 0.77 GCF_000220215.1 AFPW01 2536 2602 2602 5 3 57 1 Hallella_dentalis_homd_HMT_583 GCA_000220235.1 HMT-693 ATCC 33563 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens ATCC 33563 24 2669193 43.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/235/GCA_000220235.1_ASM22023v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA64737 997352 SAMN00262639 ASM22023v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-29T22:10:06.737 not determined 454 Baylor College of Medicine 36.8x 99.98 99.32 0 99.95 0.09 GCF_000220235.1 AFPX01 2214 2269 2269 7 3 44 1 Prevotella_nigrescens_homd_HMT_693 GCA_000220255.1 HMT-714 ATCC 700821 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens ATCC 700821 40 3127600 39.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/255/GCA_000220255.1_ASM22025v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA64739 997353 SAMN00262640 ASM22025v1 Scaffold Newbler Assembler v. 2.3-01162009 2011-04-29T22:24:06.753 not determined 454 Baylor College of Medicine 32.9x 99.94 99.66 0.49 99.95 0.47 GCF_000220255.1 AFPY01 2550 2606 2606 8 2 45 1 Prevotella_pallens_homd_HMT_714 GCA_000220275.1 HMT-758 SK340 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK340 4 2408728 43.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/275/GCA_000220275.1_ASM22027v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA53169 888814 SAMN00253970 ASM22027v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-03-29T15:07:12.570 not determined 454 Baylor College of Medicine 38.2x 95.36 100 0 99.99 0.06 GCF_000220275.1 AFQB01 2305 2376 2376 32 3 35 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000220315.1 HMT-758 ATCC 29667 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis ATCC 29667 10 2429348 42.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/315/GCA_000220315.1_ASM22031v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_N PRJNA64743 997356 SAMN00262642 ASM22031v1 Scaffold Newbler Assembler v. 2.3-04192010 2011-04-29T22:51:06.770 not determined 454 Baylor College of Medicine 31.6x 95.33 100 0 100 0.13 GCF_000220315.1 AFQA01 2320 2391 2391 32 3 35 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000220835.1 HMT-448 F0400 Unnamed Cultivated Oral (Abundance: Medium) HMT-448 Actinomyces sp. HMT-448 F0400 12 2828172 69.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/835/GCA_000220835.1_ASM22083v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp000220835 PRJNA53017 888056 SAMN02299443 ASM22083v1 Scaffold Newbler Assembler v. 2.3-04192010 2013-08-02T12:07:41.050 not determined 454 Baylor College of Medicine 32.6x 99.29 0.47 99.96 0.03 GCF_000220835.1 AFQC01 2384 2455 2455 14 3 53 1 Actinomyces_sp_HMT_448_homd_HMT_448 GCA_000220865.1 HMT-099 ATCC 33926 Named Cultivated Oral (Abundance: Medium) HMT-099 Neisseria macacae ATCC 33926 66 2748368 52.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/220/865/GCA_000220865.1_ASM22086v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria macacae PRJNA64729 997348 SAMN02299447 ASM22086v1 Scaffold Newbler Assembler v. 2.3-04192010 2013-08-02T12:07:41.436 not determined 454 Baylor College of Medicine 22.5x 99.94 99.45 0 100 0.53 GCF_000220865.1 AFQE01 2453 2532 2532 19 3 56 1 Neisseria_macacae_homd_HMT_099 GCA_000221085.2 HMT-530 CC003-HC2 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes CC003-HC2 1 2550549 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/221/085/GCA_000221085.2_ASM22108v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA65579 1005703 SAMN00621711 ASM22108v1 Contig Celera Assembler v. 6.1 2011-05-26T17:00:09.707 not determined 454 J. Craig Venter Institute 30.0x 100 0 100 0.27 GCF_000221085.1 AFUK01 2355 2437 2437 24 9 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_000221145.2 HMT-791 SK182B-JCVI Named Cultivated Skin (Abundance: Medium) HMT-791 Cutibacterium namnetense SK182B-JCVI 50 2430672 60.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/221/145/GCA_000221145.2_ASM22114v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium namnetense PRJNA68569 1051006 SAMN02299458 ASM22114v2 Contig Celera Assembler v. 6.1 2013-08-02T12:07:42.433 not determined 454 J. Craig Venter Institute 30.0x 99.48 GCF_000221145.1 AFUN01 2257 2336 2336 26 5 47 1 Cutibacterium_namnetense_homd_HMT_791 GCA_000221165.2 HMT-398 F0392 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani F0392 2 1916998 41.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/221/165/GCA_000221165.2_ASM22116v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AX PRJNA49439 768726 SAMN02415617 ASM22116v2 Contig Celera Assembler v. 6.1 2013-11-20T14:49:18.460 not determined 454; Illumina J. Craig Venter Institute 147.0x 87.46 GCF_000221165.1 AFUO01 1845 1961 1961 41 12 62 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_000221165.2 HMT-398 F0392 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani F0392 2 1916998 41.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/221/165/GCA_000221165.2_ASM22116v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AX PRJNA49439 768726 SAMN02415617 ASM22116v2 Contig Celera Assembler v. 6.1 2013-11-20T14:49:18.460 not determined 454; Illumina J. Craig Venter Institute 147.0x 87.46 GCF_000221165.1 AFUO01 1845 1961 1961 41 12 62 1 Streptococcus_oralis_HMT_071_398_707 GCA_000221505.2 HMT-709 F0423 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-709 Limosilactobacillus oris F0423 20 2174937 49.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/221/505/GCA_000221505.2_ASM22150v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus oris PRJNA61831 944562 SAMN00195308 ASM22150v2 Contig Celera Assembler v. 6.1 2011-01-21T14:35:03.686 not determined 454 J. Craig Venter Institute 16.0x 98.38 GCF_000221505.1 AFTL01 2051 2164 2164 28 17 67 1 Limosilactobacillus_oris_homd_HMT_709 GCA_000221525.2 HMT-116 VCU116 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis VCU116 38 2452574 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/221/525/GCA_000221525.2_ASM22152v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA53751 904334 SAMN00116853 ASM22152v2 Contig Newbler v. 2.3 2010-10-29T11:52:04.253 454 J. Craig Venter Institute 24.0x 98.97 GCF_000221525.1 AFTX01 2376 2489 2489 54 5 53 1 Staphylococcus_capitis_homd_HMT_116 GCA_000221565.2 HMT-375 F0436 Named** Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-375 Urinicoccus timonensis F0436 1 1950550 41.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/221/565/GCA_000221565.2_ASM22156v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Urinicoccus;s__Urinicoccus timonensis PRJNA52051 879308 SAMN00116783 ASM22156v1 Contig Celera Assembler v. 6.1 2010-10-27T15:53:04.177 not determined 454 J. Craig Venter Institute 30.2x 95.76 0 94.85 1.87 GCF_000221565.1 AFUH01 2153 2257 2257 40 9 54 1 Urinicoccus_timonensis_homd_HMT_375 GCA_000221605.2 HMT-780 F0422 Unnamed Cultivated Oral (Abundance: High) HMT-780 Veillonella sp. HMT-780 F0422 75 1731014 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/221/605/GCA_000221605.2_ASM22160v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp001553345 PRJNA61835 944564 SAMN00195310 ASM22160v1 Contig Celera Assembler v. 6.1 2011-01-21T14:35:06.127 not determined 454 J. Craig Venter Institute 26.3x GCF_000221605.1 AFUJ01 1553 1634 1634 22 14 44 1 Veillonella_sp_HMT_780_homd_HMT_780 GCA_000221985.1 HMT-425 IS7493 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae IS7493 2 2195458 39.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/221/985/GCA_000221985.1_ASM22198v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA69547 1054460 SAMN02603728 ASM22198v1 Complete Genome 2014-01-30T14:21:48.920 Public Health Laboratory- Toronto 97.1 99.82 0.2 99.99 0.11 GCF_000221985.1 2166 2280 2280 69 3 41 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_000222045.2 HMT-851 M21127 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M21127 38 1945624 38.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/222/045/GCA_000222045.2_ASM22204v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_N PRJNA66575 1028804 SAMN02952885 ASM22204v2 Contig Newbler v. 2.3 and Mira3; combined assemblies with Minimus2 2014-08-05T16:01:18.390 USA: Georgia blood 454 GS-FLX Meningitis and Vaccine Preventable Diseases Branch, Centers for Disease Control and Prevention 20.0x 95.6 GCF_000222045.1 AFQP01 1890 2020 2020 63 12 54 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_000222705.2 HMT-398 SK95 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani SK95 66 2020730 40.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/222/705/GCA_000222705.2_ASM22270v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AY PRJNA64679 1000588 SAMN00621712 ASM22270v2 Contig Newbler v. 2.5.3 2011-05-26T17:00:14.243 not determined 454 J. Craig Venter Institute 21.0x 87.3 GCF_000222705.1 AFUB01 1964 2041 2041 40 3 33 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_000222705.2 HMT-398 SK95 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani SK95 66 2020730 40.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/222/705/GCA_000222705.2_ASM22270v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AY PRJNA64679 1000588 SAMN00621712 ASM22270v2 Contig Newbler v. 2.5.3 2011-05-26T17:00:14.243 not determined 454 J. Craig Venter Institute 21.0x 87.3 GCF_000222705.1 AFUB01 1964 2041 2041 40 3 33 1 Streptococcus_oralis_HMT_071_398_707 GCA_000222725.2 HMT-411 SK236 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis SK236 18 1988691 42.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/222/725/GCA_000222725.2_ASM22272v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_C PRJNA67179 1035185 SAMN00621706 ASM22272v2 Contig Celera Assembler v. 6.1 2011-05-26T16:54:56.187 not determined 454 J. Craig Venter Institute 17.0x 94.27 GCF_000222725.1 AFUC01 1890 1990 1990 32 13 54 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_000222745.2 HMT-073 ATCC 700641 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis ATCC 700641 49 2131358 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/222/745/GCA_000222745.2_ASM22274v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus australis PRJNA67183 888833 SAMN00621699 ASM22274v2 Contig Celera Assembler v. 6.1 2011-05-26T16:51:04.483 not determined 454 J. Craig Venter Institute 13.0x 99.98 GCF_000222745.1 AFUD01 2010 2113 2113 33 12 57 1 Streptococcus_australis_homd_HMT_073 GCA_000222765.2 HMT-578 ATCC 51100 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus ATCC 51100 10 1994424 42.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/222/765/GCA_000222765.2_ASM22276v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus PRJNA67185 889201 SAMN00621700 ASM22276v2 Contig Celera Assembler v. 6.1 2011-05-26T16:51:09.383 not determined 454 J. Craig Venter Institute 17.0x 99.98 GCF_000222765.1 AFUE01 1894 2005 2005 35 16 59 1 Streptococcus_cristatus_homd_HMT_578 GCA_000223235.2 HMT-071 SK313 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SK313 5 1888813 41.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/235/GCA_000223235.2_ASM22323v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA67193 1035190 SAMN00621710 ASM22323v2 Contig Celera Assembler v. 6.1 2011-05-26T16:55:16.870 not determined 454 J. Craig Venter Institute 28.7x 93.27 98.74 0.33 96.35 0.06 GCF_000223235.1 AFUU01 2010 2118 2118 40 13 54 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000223235.2 HMT-071 SK313 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SK313 5 1888813 41.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/235/GCA_000223235.2_ASM22323v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA67193 1035190 SAMN00621710 ASM22323v2 Contig Celera Assembler v. 6.1 2011-05-26T16:55:16.870 not determined 454 J. Craig Venter Institute 28.7x 93.27 98.74 0.33 96.35 0.06 GCF_000223235.1 AFUU01 2010 2118 2118 40 13 54 1 Streptococcus_oralis_HMT_071_398_707 GCA_000223255.2 HMT-638 SK970 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 SK970 9 1945605 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/255/GCA_000223255.2_ASM22325v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_G PRJNA67191 1035189 SAMN00621709 ASM22325v2 Contig Celera Assembler v. 6.1 2011-05-26T16:55:11.167 not determined 454 J. Craig Venter Institute 25.3x 91.99 98.51 1.17 93.64 2.05 GCF_000223255.1 AFUT01 2133 2237 0 36 13 54 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_000223255.2 HMT-638 SK970 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 SK970 9 1945605 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/255/GCA_000223255.2_ASM22325v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_G PRJNA67191 1035189 SAMN00621709 ASM22325v2 Contig Celera Assembler v. 6.1 2011-05-26T16:55:11.167 not determined 454 J. Craig Venter Institute 25.3x 91.99 98.51 1.17 93.64 2.05 GCF_000223255.1 AFUT01 2133 2237 0 36 13 54 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_000223275.2 HMT-946 HK 85 Named Cultivated Oral (Abundance: Medium) HMT-946 Haemophilus pittmaniae HK 85 26 2182608 42.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/275/GCA_000223275.2_ASM22327v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D pittmaniae PRJNA67189 1035188 SAMN00621708 ASM22327v1 Contig Celera Assembler v. 6.1 2011-05-26T16:55:06.867 not determined 454 J. Craig Venter Institute 21.1x 99.91 GCF_000223275.1 AFUV01 2348 2464 2464 28 26 61 1 Haemophilus_pittmaniae_homd_HMT_946 GCA_000223295.2 HMT-576 SK1060 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus SK1060 10 1963771 37.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/295/GCA_000223295.2_ASM22329v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA67177 1035184 SAMN00621704 ASM22329v1 Contig Celera Assembler v. 6.1 2011-05-26T16:52:51.753 not determined 454 J. Craig Venter Institute 22.1x 99.93 98.04 0 89.83 2.91 GCF_000223295.1 AFUP01 2389 2486 2486 38 7 51 1 Streptococcus_constellatus_homd_HMT_576 GCA_000223315.2 HMT-393 F0440 Unnamed Cultivated Oral (Abundance: Scarce) HMT-393 Parvimonas sp. HMT-393 F0440 5 1483165 28.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/315/GCA_000223315.2_ASM22331v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas sp000223315 PRJNA61837 944565 SAMN00195327 ASM22331v1 Contig Celera Assembler v. 6.1 2011-01-21T14:36:03.807 not determined 454 J. Craig Venter Institute 26.4x 93.83 0.41 89.68 4.23 GCF_000223315.1 AFUS01 1616 1701 1701 33 10 41 1 GCA_000223335.2 HMT-638 X Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 X 16 1869505 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/335/GCA_000223335.2_ASM22333v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_M PRJNA64693 997830 SAMN00255230 ASM22333v2 Contig Celera Assembler v. 6.1 2011-04-07T16:01:08.920 not determined 454 J. Craig Venter Institute 16.8x 94.66 99.41 0 99.95 0.46 GCF_000223335.1 AFUQ01 1909 2014 0 33 18 53 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_000223335.2 HMT-638 X Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 X 16 1869505 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/335/GCA_000223335.2_ASM22333v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_M PRJNA64693 997830 SAMN00255230 ASM22333v2 Contig Celera Assembler v. 6.1 2011-04-07T16:01:08.920 not determined 454 J. Craig Venter Institute 16.8x 94.66 99.41 0 99.95 0.46 GCF_000223335.1 AFUQ01 1909 2014 0 33 18 53 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_000223355.2 HMT-893 F0384 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 F0384 7 3133330 68.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/355/GCA_000223355.2_ASM22335v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA61829 944560 SAMN00195309 ASM22335v1 Contig Celera Assembler v. 6.1 2011-01-21T14:35:04.723 not determined 454 J. Craig Venter Institute 22.6x GCF_000223355.1 AFUR01 2556 2633 2633 15 9 52 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_000223355.2 HMT-893 F0384 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 F0384 7 3133330 68.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/355/GCA_000223355.2_ASM22335v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA61829 944560 SAMN00195309 ASM22335v1 Contig Celera Assembler v. 6.1 2011-01-21T14:35:04.723 not determined 454 J. Craig Venter Institute 22.6x GCF_000223355.1 AFUR01 2556 2633 2633 15 9 52 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_000224255.2 HMT-092 LMG 5135 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-092 Neisseria weaveri LMG 5135 46 2183368 49.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/224/255/GCA_000224255.2_ASM22425v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria weaveri PRJNA68581 1051985 SAMN02470907 ASM22425v1 Contig CLC genomics wb v. 4.0 - 06/01/2011 2013-12-19T13:25:24.046 Illumina GA IIx Seoul National University 1000.0x 99.99 GCF_000224255.1 AFWQ01 2002 2067 2067 13 3 47 2 Neisseria_weaveri_homd_HMT_092 GCA_000224275.2 HMT-092 ATCC 51223 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-092 Neisseria weaveri ATCC 51223 40 2125582 49.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/224/275/GCA_000224275.2_ASM22427v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria weaveri PRJNA68583 1051972 SAMN02470917 ASM22427v2 Contig CLC genomics wb v. 4.0 - 06/01/2011 2013-12-19T13:25:24.670 Illumina GA IIx Seoul National University 1000.0x 99.14 GCF_000224275.1 AFWR01 1930 1994 1994 13 3 46 2 Neisseria_weaveri_homd_HMT_092 GCA_000224595.1 HMT-313 C561 Named Cultivated Oral (Abundance: High) HMT-313 Prevotella jejuni C561 76 4031149 42.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/224/595/GCA_000224595.1_Prevotella_sp_C561_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella jejuni PRJNA41971 563031 SAMN02463828 Prevotella_sp_C561_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:44.023 not determined missing 454 Broad Institute 31.0x 99.32 0 100 0.33 GCF_000224595.1 ADCT01 3287 3360 3360 12 8 52 1 Prevotella_jejuni_homd_HMT_313 GCA_000224615.1 HMT-288 F0390 Named Cultivated Oral (Abundance: Medium) HMT-288 Segatella oulorum F0390 16 2805893 47.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/224/615/GCA_000224615.1_Prev_oulo_F0390_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oulorum PRJNA43117 702438 SAMN02463847 Prev_oulo_F0390_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:46.036 not determined missing 454 Broad Institute 44.0x 97.25 98.58 0 99.47 0.08 GCF_000224615.1 ADGI01 2450 2517 2517 9 5 52 1 Segatella_oulorum_homd_HMT_288 GCA_000224635.1 HMT-605 6_1_46AFAA Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-605 Desulfovibrio fairfieldensis 6_1_46AFAA 20 3847181 61.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/224/635/GCA_000224635.1_Desulfovibrio_sp_6_1_46AFAA_V1 d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__Desulfovibrio fairfieldensis_A PRJNA40021 665942 SAMN02463796 Desulfovibrio_sp_6_1_46AFAA_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:40.617 not determined missing 454 Broad Institute 31.0x 99.41 0 100 0.08 GCF_000224635.1 ACWM01 3275 3354 3354 22 6 50 1 Desulfovibrio_fairfieldensis_homd_HMT_605 GCA_000225385.2 HMT-755 M18 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius M18 6 2325981 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/225/385/GCA_000225385.2_ASM22538v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA71499 1074494 SAMN02471912 ASM22538v2 Contig Newbler v. 2.3 2013-12-19T13:43:42.537 New Zealand:Dunedin oral swab from healthy volunteer Roche 454 GS-FLX; Sanger (ABI 3730) University of Otago 18.0x 95.91 GCF_000225385.1 AGBV01 2111 2238 2238 40 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_000226155.1 HMT-536 M18 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-536 Pseudomonas aeruginosa M18 1 6327754 66.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/226/155/GCA_000226155.1_ASM22615v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa PRJNA61423 941193 SAMN02603849 ASM22615v1 Complete Genome 2014-01-30T14:54:01.957 School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, PR China 99.86 99.51 0.11 100 0.17 GCF_000226155.1 5759 5967 5967 121 12 74 1 Pseudomonas_aeruginosa_homd_HMT_536 GCA_000226315.1 HMT-330 ARL-13 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-330 Micavibrio aeruginosavorus ARL-13 1 2481983 54.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/226/315/GCA_000226315.1_ASM22631v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Micavibrionales;f__Micavibrionaceae;g__Micavibrio;s__Micavibrio aeruginosavorus_B PRJNA49751 856793 SAMN02604252 ASM22631v1 Complete Genome 2014-01-30T15:13:20.810 University of Virginia, Department of Biology 90.81 0.8 99.98 0.41 GCF_000226315.1 2338 2388 2388 5 3 41 1 Micavibrio_aeruginosavorus_homd_HMT_330 GCA_000226495.3 HMT-545 ATCC 33389 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus ATCC 33389 48 2267213 42.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/226/495/GCA_000226495.3_ASM22649v3 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA62995 985008 SAMN02471993 ASM22649v3 Contig gsMapper v. 2.9 2013-12-19T13:52:15.753 USA oral cavity Illumina MiSeq Bumgarner laboratory, Department of Microbiology, University of Washington 32.6x 99.99 GCF_000226495.2 AEWB02 2120 2233 2233 58 4 50 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_000227295.1 HMT-552 ATCC 25577 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum ATCC 25577 7 2553960 63.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/227/295/GCA_000227295.1_ASM22729v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA64741 997355 SAMN02299449 ASM22729v1 Scaffold Newbler Assembler v. 2.3-04192010 2013-08-02T12:07:41.603 not determined 454 Baylor College of Medicine 28.8x 100 0 100 0.11 GCF_000227295.1 AGBA01 2299 2372 2372 22 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_000227805.2 HMT-768 TCI-13 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-13 292 2053482 43.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/227/805/GCA_000227805.2_SMUT1-NEX_2-13 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA71875 1074053 SAMN02436627 SMUT1-NEX_2-13 Contig Newbler v. 2.6 2013-12-04T14:28:35.020 Brazil dental plaque Illumina GA IIx JCVI 69.4x 98.79 GCF_000227805.1 AGGC01 1902 1955 1955 29 0 23 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000227965.2 HMT-768 TCI-77 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-77 258 2106508 43.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/227/965/GCA_000227965.2_SMUT1-NEX_10-77 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA71891 1074061 SAMN02436619 SMUT1-NEX_10-77 Contig Newbler v. 2.6 2013-12-04T14:28:34.557 Brazil dental plaque Illumina GA IIx JCVI 72.5x 98.79 GCF_000227965.1 AGGK01 1965 2033 2033 31 1 35 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000227985.2 HMT-768 TCI-79 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-79 247 2114540 43.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/227/985/GCA_000227985.2_SMUT1-NEX_11-79 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA71893 1074062 SAMN02436460 SMUT1-NEX_11-79 Contig Newbler v. 2.6 2013-12-04T14:28:25.103 Brazil dental plaque Illumina GA IIx JCVI 46.9x 98.83 GCF_000227985.1 AGGL01 1973 2038 2038 28 1 35 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000228065.2 HMT-768 TCI-107 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-107 283 2136893 43.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/065/GCA_000228065.2_SMUT1-NEX_34-107 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA71901 1074066 SAMN02436342 SMUT1-NEX_34-107 Contig Newbler v. 2.6 2013-12-04T14:23:04.120 Brazil dental plaque Illumina GA IIx JCVI 65.5x 98.81 GCF_000228065.1 AGGP01 1967 2026 2026 30 0 28 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000228125.2 HMT-768 TCI-124 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-124 255 2076686 43.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/125/GCA_000228125.2_SMUT1-NEX_62-124 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA71907 1074069 SAMN02436461 SMUT1-NEX_62-124 Contig Newbler v. 2.6 2013-12-04T14:28:25.157 Brazil dental plaque Illumina GA IIx JCVI 65.4x 98.81 GCF_000228125.1 AGGS01 1934 1998 1998 30 0 33 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000228245.2 HMT-768 TCI-355 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-355 227 2070349 43.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/245/GCA_000228245.2_SMUT2-NEX_5-355 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA71919 1074076 SAMN02436536 SMUT2-NEX_5-355 Contig Newbler v. 2.6 2013-12-04T14:28:29.750 Brazil dental plaque Illumina GA IIx JCVI 52.8x 99.07 GCF_000228245.1 AGGY01 1929 1995 1995 29 2 34 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000228265.2 HMT-768 TCI-357 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-357 220 2094807 43.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/265/GCA_000228265.2_SMUT2-NEX_6-357 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA71921 1074077 SAMN02436456 SMUT2-NEX_6-357 Contig Newbler v. 2.6 2013-12-04T14:28:24.890 Brazil dental plaque Illumina GA IIx JCVI 64.9x 98.78 GCF_000228265.1 AGGZ01 1956 2014 2014 28 0 29 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000228305.2 HMT-768 TCI-366 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-366 298 2070376 43.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/305/GCA_000228305.2_SMUT2-NEX_8-366 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA71925 1074079 SAMN02436538 SMUT2-NEX_8-366 Contig Newbler v. 2.6 2013-12-04T14:28:29.853 Brazil dental plaque Illumina GA IIx JCVI 64.4x 98.96 GCF_000228305.1 AGHB01 1910 1971 1971 30 0 30 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000228445.2 HMT-768 TCI-384 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-384 196 2125481 43.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/445/GCA_000228445.2_SMUT2-NEX_34-384 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA71939 1074086 SAMN02436624 SMUT2-NEX_34-384 Contig Newbler v. 2.6 2013-12-04T14:28:34.843 Brazil dental plaque Illumina GA IIx JCVI 57.1x 98.61 GCF_000228445.1 AGHI01 1984 2045 2045 29 0 31 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000228545.2 HMT-768 TCI-118 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-118 224 2107227 43.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/545/GCA_000228545.2_SMUT4-NEX_6-118 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA71985 1074117 SAMN02436543 SMUT4-NEX_6-118 Contig Newbler v. 2.6 2013-12-04T14:28:30.167 Brazil dental plaque Illumina GA IIx JCVI 58.3x 98.88 GCF_000228545.1 AGHN01 1952 2016 2016 28 0 35 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000228665.2 HMT-768 TCI-200 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus TCI-200 216 2085681 43.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/665/GCA_000228665.2_SMUT6-NEX_1-200 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA72047 1074152 SAMN02436529 SMUT6-NEX_1-200 Contig Newbler v. 2.6 2013-12-04T14:28:29.350 Brazil dental plaque Illumina GA IIx JCVI 58.9x 98.8 GCF_000228665.1 AGHT01 1932 1986 1986 26 0 27 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000228745.2 HMT-686 TCI-101 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-101 141 1816188 36.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/745/GCA_000228745.2_SMUT4-NEX_2-101 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71977 1074113 SAMN02436614 SMUT4-NEX_2-101 Contig Newbler v. 2.6 2013-12-04T14:28:34.307 Brazil dental plaque Illumina GA IIx JCVI 71.2x 99.21 GCF_000228745.1 AGKF01 1701 1765 1765 27 1 35 1 Streptococcus_mutans_homd_HMT_686 GCA_000228765.2 HMT-686 TCI-109 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-109 146 1801671 37.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/765/GCA_000228765.2_SMUT4-NEX_3-109 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71979 1074114 SAMN02436443 SMUT4-NEX_3-109 Contig Newbler v. 2.6 2013-12-04T14:28:24.143 Brazil dental plaque Illumina GA IIx JCVI 53.1x 99.15 GCF_000228765.1 AGKG01 1677 1742 1742 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000228785.2 HMT-686 TCI-11 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-11 141 1799918 37.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/785/GCA_000228785.2_SMUT3-NEX_4-11 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71953 1074095 SAMN02436346 SMUT3-NEX_4-11 Contig Newbler v. 2.6 2013-12-04T14:23:04.387 Brazil dental plaque Illumina GA IIx JCVI 64.6x 99.17 GCF_000228785.1 AGKH01 1679 1744 1744 26 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000228805.2 HMT-686 TCI-110 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-110 135 1809107 36.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/805/GCA_000228805.2_SMUT4-NEX_4-110 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71981 1074115 SAMN02436598 SMUT4-NEX_4-110 Contig Newbler v. 2.6 2013-12-04T14:28:33.480 Brazil dental plaque Illumina GA IIx JCVI 50.8x 99.18 GCF_000228805.1 AGKI01 1695 1761 1761 26 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000228825.2 HMT-686 TCI-116 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-116 60 1929685 36.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/825/GCA_000228825.2_SMUT4-NEX_5-116 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71983 1074116 SAMN02436347 SMUT4-NEX_5-116 Contig Newbler v. 2.6 2013-12-04T14:23:04.447 Brazil dental plaque Illumina GA IIx JCVI 68.0x 99.35 GCF_000228825.1 AGKJ01 1797 1866 1866 30 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000228845.2 HMT-686 TCI-120 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-120 159 1776899 37.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/845/GCA_000228845.2_SMUT4-NEX_7-120 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71987 1074118 SAMN02436599 SMUT4-NEX_7-120 Contig Newbler v. 2.6 2013-12-04T14:28:33.530 Brazil dental plaque Illumina GA IIx JCVI 52.2x 99.14 GCF_000228845.1 AGKK01 1660 1722 1722 24 1 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000228865.2 HMT-686 TCI-123 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-123 109 1890503 36.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/865/GCA_000228865.2_SMUT4-NEX_8-123 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71989 1074119 SAMN02436600 SMUT4-NEX_8-123 Contig Newbler v. 2.6 2013-12-04T14:28:33.583 Brazil dental plaque Illumina GA IIx JCVI 39.2x 99.3 GCF_000228865.1 AGKL01 1768 1833 1833 26 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000228885.2 HMT-686 TCI-125 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-125 96 1861689 36.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/885/GCA_000228885.2_SMUT4-NEX_9-125 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71991 1074120 SAMN02436444 SMUT4-NEX_9-125 Contig Newbler v. 2.6 2013-12-04T14:28:24.193 Brazil dental plaque Illumina GA IIx JCVI 70.7x 99.38 GCF_000228885.1 AGKM01 1739 1803 1803 25 0 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000228905.2 HMT-686 TCI-138 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-138 131 1805076 36.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/905/GCA_000228905.2_SMUT4-NEX_10-138 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71993 1074121 SAMN02436445 SMUT4-NEX_10-138 Contig Newbler v. 2.6 2013-12-04T14:28:24.260 Brazil dental plaque Illumina GA IIx JCVI 53.0x 99.22 GCF_000228905.1 AGKN01 1683 1746 1746 25 1 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000228925.2 HMT-686 TCI-143 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-143 157 1776306 37.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/925/GCA_000228925.2_SMUT4-NEX_11-143 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71995 1074122 SAMN02436446 SMUT4-NEX_11-143 Contig Newbler v. 2.6 2013-12-04T14:28:24.320 Brazil dental plaque Illumina GA IIx JCVI 28.8x 99.14 GCF_000228925.1 AGKO01 1654 1716 1716 24 1 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000228945.2 HMT-686 TCI-145 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-145 99 1877792 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/945/GCA_000228945.2_SMUT4-NEX_12-145 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71997 1074123 SAMN02436447 SMUT4-NEX_12-145 Contig Newbler v. 2.6 2013-12-04T14:28:24.380 Brazil dental plaque Illumina GA IIx JCVI 48.1x 99.35 GCF_000228945.1 AGKP01 1763 1829 1829 26 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000228965.2 HMT-686 TCI-146 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-146 143 1785489 37.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/965/GCA_000228965.2_SMUT4-NEX_21-146 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71999 1074124 SAMN02436345 SMUT4-NEX_21-146 Contig Newbler v. 2.6 2013-12-04T14:23:04.307 Brazil dental plaque Illumina GA IIx JCVI 71.2x 99.14 GCF_000228965.1 AGKE01 1675 1736 1736 23 1 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000228985.2 HMT-686 TCI-148 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-148 120 1819408 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/228/985/GCA_000228985.2_SMUT4-NEX_25-148 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72001 1074125 SAMN02436531 SMUT4-NEX_25-148 Contig Newbler v. 2.6 2013-12-04T14:28:29.467 Brazil dental plaque Illumina GA IIx JCVI 67.8x 99.22 GCF_000228985.1 AGKQ01 1701 1765 1765 25 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000229005.2 HMT-686 TCI-149 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-149 117 1822635 36.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/005/GCA_000229005.2_SMUT4-NEX_34-149 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72003 1074126 SAMN02436512 SMUT4-NEX_34-149 Contig Newbler v. 2.6 2013-12-04T14:28:28.310 Brazil dental plaque Illumina GA IIx JCVI 62.2x 99.23 GCF_000229005.1 AGKR01 1702 1764 1764 24 1 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000229025.2 HMT-686 TCI-151 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-151 121 1820468 36.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/025/GCA_000229025.2_SMUT4-NEX_50-151 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72005 1074127 SAMN02436601 SMUT4-NEX_50-151 Contig Newbler v. 2.6 2013-12-04T14:28:33.633 Brazil dental plaque Illumina GA IIx JCVI 65.3x 99.28 GCF_000229025.1 AGKS01 1701 1770 1770 28 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229045.2 HMT-686 TCI-152 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-152 101 1851396 36.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/045/GCA_000229045.2_SMUT4-NEX_57-152 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72007 1074128 SAMN02436602 SMUT4-NEX_57-152 Contig Newbler v. 2.6 2013-12-04T14:28:33.687 Brazil dental plaque Illumina GA IIx JCVI 58.9x 99.29 GCF_000229045.1 AGKT01 1730 1795 1795 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229065.2 HMT-686 TCI-153 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-153 55 1927654 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/065/GCA_000229065.2_SMUT4-NEX_62-153 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72009 1074129 SAMN02436348 SMUT4-NEX_62-153 Contig Newbler v. 2.6 2013-12-04T14:23:04.507 Brazil dental plaque Illumina GA IIx JCVI 78.0x 99.35 GCF_000229065.1 AGKU01 1802 1870 1870 27 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229085.2 HMT-686 TCI-154 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-154 120 1818945 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/085/GCA_000229085.2_SMUT4-NEX_78-154 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72011 1074130 SAMN02436448 SMUT4-NEX_78-154 Contig Newbler v. 2.6 2013-12-04T14:28:24.443 Brazil dental plaque Illumina GA IIx JCVI 43.5x 99.22 GCF_000229085.1 AGKV01 1698 1760 1760 25 1 35 1 Streptococcus_mutans_homd_HMT_686 GCA_000229105.2 HMT-686 TCI-162 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-162 130 1817871 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/105/GCA_000229105.2_SMUT5-NEX_3-162 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72017 1074134 SAMN02436603 SMUT5-NEX_3-162 Contig Newbler v. 2.6 2013-12-04T14:28:33.743 Brazil dental plaque Illumina GA IIx JCVI 62.9x 99.22 GCF_000229105.1 AGKW01 1696 1762 1762 25 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229125.2 HMT-686 TCI-163 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-163 92 1897877 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/125/GCA_000229125.2_SMUT5-NEX_4-163 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72019 1074135 SAMN02436449 SMUT5-NEX_4-163 Contig Newbler v. 2.6 2013-12-04T14:28:24.500 Brazil dental plaque Illumina GA IIx JCVI 53.7x 99.33 GCF_000229125.1 AGKX01 1769 1831 1831 24 1 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000229145.2 HMT-686 TCI-164 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-164 115 1829200 37.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/145/GCA_000229145.2_SMUT5-NEX_5-164 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72021 1074136 SAMN02436604 SMUT5-NEX_5-164 Contig Newbler v. 2.6 2013-12-04T14:28:33.797 Brazil dental plaque Illumina GA IIx JCVI 77.3x 99.29 GCF_000229145.1 AGKY01 1715 1782 1782 26 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229165.2 HMT-686 TCI-169 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-169 59 1927770 36.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/165/GCA_000229165.2_SMUT5-NEX_6-169 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72023 1074137 SAMN02436349 SMUT5-NEX_6-169 Contig Newbler v. 2.6 2013-12-04T14:23:04.557 Brazil dental plaque Illumina GA IIx JCVI 68.1x 99.36 GCF_000229165.1 AGKZ01 1803 1872 1872 27 1 40 1 Streptococcus_mutans_homd_HMT_686 GCA_000229185.2 HMT-686 TCI-170 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-170 86 1899487 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/185/GCA_000229185.2_SMUT5-NEX_7-170 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72025 1074138 SAMN02436605 SMUT5-NEX_7-170 Contig Newbler v. 2.6 2013-12-04T14:28:33.847 Brazil dental plaque Illumina GA IIx JCVI 48.2x 99.34 GCF_000229185.1 AGLA01 1771 1837 1837 27 0 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229205.2 HMT-686 TCI-173 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-173 112 1872679 36.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/205/GCA_000229205.2_SMUT5-NEX_9-173 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72029 1074140 SAMN02436513 SMUT5-NEX_9-173 Contig Newbler v. 2.6 2013-12-04T14:28:28.380 Brazil dental plaque Illumina GA IIx JCVI 56.2x 99.34 GCF_000229205.1 AGLB01 1743 1809 1809 25 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229225.2 HMT-686 TCI-176 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-176 128 1794749 37.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/225/GCA_000229225.2_SMUT5-NEX_12-176 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72033 1074143 SAMN02436514 SMUT5-NEX_12-176 Contig Newbler v. 2.6 2013-12-04T14:28:28.430 Brazil dental plaque Illumina GA IIx JCVI 55.5x 99.2 GCF_000229225.1 AGLC01 1682 1748 1748 26 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229245.2 HMT-686 TCI-177 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-177 110 1882948 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/245/GCA_000229245.2_SMUT5-NEX_21-177 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72035 1074144 SAMN02436606 SMUT5-NEX_21-177 Contig Newbler v. 2.6 2013-12-04T14:28:33.900 Brazil dental plaque Illumina GA IIx JCVI 59.9x 99.3 GCF_000229245.1 AGLD01 1763 1829 1829 26 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229265.2 HMT-686 TCI-179 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-179 126 1818201 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/265/GCA_000229265.2_SMUT5-NEX_34-179 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72037 1074146 SAMN02436350 SMUT5-NEX_34-179 Contig Newbler v. 2.6 2013-12-04T14:23:04.607 Brazil dental plaque Illumina GA IIx JCVI 62.9x 99.22 GCF_000229265.1 AGLE01 1696 1762 1762 25 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229285.2 HMT-686 TCI-187 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-187 127 1765562 37.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/285/GCA_000229285.2_SMUT5-NEX_57-187 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72039 1074148 SAMN02436351 SMUT5-NEX_57-187 Contig Newbler v. 2.6 2013-12-04T14:23:04.673 Brazil dental plaque Illumina GA IIx JCVI 56.5x 99.17 GCF_000229285.1 AGLF01 1648 1711 1711 26 1 35 1 Streptococcus_mutans_homd_HMT_686 GCA_000229305.2 HMT-686 TCI-191 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-191 120 1832015 36.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/305/GCA_000229305.2_SMUT5-NEX_62-191 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72041 1074149 SAMN02436352 SMUT5-NEX_62-191 Contig Newbler v. 2.6 2013-12-04T14:23:04.727 Brazil dental plaque Illumina GA IIx JCVI 72.8x 99.26 GCF_000229305.1 AGLG01 1715 1783 1783 28 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229325.2 HMT-686 TCI-196 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-196 90 1898193 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/325/GCA_000229325.2_SMUT5-NEX_93-196 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72045 1074151 SAMN02436353 SMUT5-NEX_93-196 Contig Newbler v. 2.6 2013-12-04T14:23:04.790 Brazil dental plaque Illumina GA IIx JCVI 51.1x 99.38 GCF_000229325.1 AGLH01 1761 1827 1827 28 1 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000229345.2 HMT-686 TCI-201 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-201 146 1770853 37.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/345/GCA_000229345.2_SMUT6-NEX_2-201 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72049 1074153 SAMN02436450 SMUT6-NEX_2-201 Contig Newbler v. 2.6 2013-12-04T14:28:24.553 Brazil dental plaque Illumina GA IIx JCVI 72.0x 99.13 GCF_000229345.1 AGLI01 1653 1719 1719 27 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000229365.2 HMT-686 TCI-202 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-202 115 1820309 36.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/365/GCA_000229365.2_SMUT6-NEX_3-202 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72051 1074154 SAMN02436515 SMUT6-NEX_3-202 Contig Newbler v. 2.6 2013-12-04T14:28:28.483 Brazil dental plaque Illumina GA IIx JCVI 85.4x 99.22 GCF_000229365.1 AGLJ01 1696 1761 1761 26 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000229385.2 HMT-686 TCI-204 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-204 136 1847156 36.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/385/GCA_000229385.2_SMUT6-NEX_4-204 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72053 1074155 SAMN02436354 SMUT6-NEX_4-204 Contig Newbler v. 2.6 2013-12-04T14:23:04.873 Brazil dental plaque Illumina GA IIx JCVI 73.0x 99.21 GCF_000229385.1 AGLK01 1719 1786 1786 26 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229405.2 HMT-686 TCI-210 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-210 135 1809350 36.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/405/GCA_000229405.2_SMUT6-NEX_5-210 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72055 1074156 SAMN02436451 SMUT6-NEX_5-210 Contig Newbler v. 2.6 2013-12-04T14:28:24.607 Brazil dental plaque Illumina GA IIx JCVI 76.8x 99.17 GCF_000229405.1 AGLL01 1689 1754 1754 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229425.2 HMT-686 TCI-212 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-212 194 1771432 37.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/425/GCA_000229425.2_SMUT6-NEX_6-212 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72057 1074157 SAMN02436452 SMUT6-NEX_6-212 Contig Newbler v. 2.6 2013-12-04T14:28:24.663 Brazil dental plaque Illumina GA IIx JCVI 62.0x 99.06 GCF_000229425.1 AGLM01 1657 1725 1725 28 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229445.2 HMT-686 TCI-218 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-218 136 1789375 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/445/GCA_000229445.2_SMUT6-NEX_8-218 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72061 1074159 SAMN02436516 SMUT6-NEX_8-218 Contig Newbler v. 2.6 2013-12-04T14:28:28.533 Brazil dental plaque Illumina GA IIx JCVI 62.3x 99.19 GCF_000229445.1 AGLN01 1669 1734 1734 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229465.2 HMT-686 TCI-219 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-219 131 1809266 37.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/465/GCA_000229465.2_SMUT6-NEX_9-219 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72063 1074160 SAMN02436607 SMUT6-NEX_9-219 Contig Newbler v. 2.6 2013-12-04T14:28:33.950 Brazil dental plaque Illumina GA IIx JCVI 61.2x 99.21 GCF_000229465.1 AGLO01 1695 1758 1758 25 1 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000229485.2 HMT-686 TCI-220 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-220 145 1790639 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/485/GCA_000229485.2_SMUT6-NEX_10-220 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72065 1074161 SAMN02436453 SMUT6-NEX_10-220 Contig Newbler v. 2.6 2013-12-04T14:28:24.717 Brazil dental plaque Illumina GA IIx JCVI 65.3x 99.18 GCF_000229485.1 AGLP01 1667 1732 1732 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229505.2 HMT-686 TCI-222 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-222 101 1861625 36.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/505/GCA_000229505.2_SMUT6-NEX_11-222 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72067 1074162 SAMN02436454 SMUT6-NEX_11-222 Contig Newbler v. 2.6 2013-12-04T14:28:24.780 Brazil dental plaque Illumina GA IIx JCVI 34.1x 99.38 GCF_000229505.1 AGLQ01 1742 1806 1806 25 0 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229525.2 HMT-686 TCI-223 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-223 134 1809565 36.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/525/GCA_000229525.2_SMUT6-NEX_12-223 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72069 1074163 SAMN02436517 SMUT6-NEX_12-223 Contig Newbler v. 2.6 2013-12-04T14:28:28.590 Brazil dental plaque Illumina GA IIx JCVI 67.0x 99.21 GCF_000229525.1 AGLR01 1681 1744 1744 25 1 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000229545.2 HMT-686 TCI-224 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-224 133 1797735 37.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/545/GCA_000229545.2_SMUT6-NEX_21-224 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72071 1074164 SAMN02436355 SMUT6-NEX_21-224 Contig Newbler v. 2.6 2013-12-04T14:23:04.947 Brazil dental plaque Illumina GA IIx JCVI 62.0x 99.16 GCF_000229545.1 AGLS01 1669 1734 1734 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229565.2 HMT-686 TCI-227 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-227 130 1802905 37.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/565/GCA_000229565.2_SMUT6-NEX_25-227 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72073 1074165 SAMN02436356 SMUT6-NEX_25-227 Contig Newbler v. 2.6 2013-12-04T14:23:05.020 Brazil dental plaque Illumina GA IIx JCVI 66.0x 99.21 GCF_000229565.1 AGLT01 1683 1748 1748 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229585.2 HMT-686 TCI-228 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-228 109 1859995 36.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/585/GCA_000229585.2_SMUT6-NEX_34-228 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72075 1074166 SAMN02436518 SMUT6-NEX_34-228 Contig Newbler v. 2.6 2013-12-04T14:28:28.647 Brazil dental plaque Illumina GA IIx JCVI 56.7x 99.28 GCF_000229585.1 AGLU01 1722 1786 1786 25 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000229605.2 HMT-686 TCI-234 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-234 106 1854930 36.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/605/GCA_000229605.2_SMUT6-NEX_50-234 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72077 1074167 SAMN02436608 SMUT6-NEX_50-234 Contig Newbler v. 2.6 2013-12-04T14:28:34.000 Brazil dental plaque Illumina GA IIx JCVI 59.1x 99.32 GCF_000229605.1 AGLV01 1737 1802 1802 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229625.2 HMT-686 TCI-239 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-239 86 1898217 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/625/GCA_000229625.2_SMUT6-NEX_57-239 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72079 1074168 SAMN02436609 SMUT6-NEX_57-239 Contig Newbler v. 2.6 2013-12-04T14:28:34.050 Brazil dental plaque Illumina GA IIx JCVI 70.9x 99.38 GCF_000229625.1 AGLW01 1757 1825 1825 28 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229645.2 HMT-686 TCI-242 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-242 61 1914397 36.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/645/GCA_000229645.2_SMUT6-NEX_62-242 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72081 1074169 SAMN02436455 SMUT6-NEX_62-242 Contig Newbler v. 2.6 2013-12-04T14:28:24.830 Brazil dental plaque Illumina GA IIx JCVI 80.8x 99.36 GCF_000229645.1 AGLX01 1782 1851 1851 28 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229665.2 HMT-686 TCI-243 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-243 66 1914702 36.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/665/GCA_000229665.2_SMUT6-NEX_78-243 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72083 1074170 SAMN02436519 SMUT6-NEX_78-243 Contig Newbler v. 2.6 2013-12-04T14:28:28.697 Brazil dental plaque Illumina GA IIx JCVI 63.3x 99.37 GCF_000229665.1 AGLY01 1786 1854 1854 27 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229685.2 HMT-686 TCI-244 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-244 143 1771140 37.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/685/GCA_000229685.2_SMUT6-NEX_93-244 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72085 1074171 SAMN02436436 SMUT6-NEX_93-244 Contig Newbler v. 2.6 2013-12-04T14:28:23.693 Brazil dental plaque Illumina GA IIx JCVI 79.1x 99.13 GCF_000229685.1 AGLZ01 1661 1727 1727 26 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229705.2 HMT-686 TCI-249 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-249 98 1879409 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/705/GCA_000229705.2_SMUT7-NEX_2-249 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72087 1074173 SAMN02436437 SMUT7-NEX_2-249 Contig Newbler v. 2.6 2013-12-04T14:28:23.757 Brazil dental plaque Illumina GA IIx JCVI 86.4x 99.33 GCF_000229705.1 AGMA01 1763 1830 1830 26 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229725.2 HMT-686 TCI-256 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-256 110 1881106 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/725/GCA_000229725.2_SMUT7-NEX_4-256 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72089 1074175 SAMN02436520 SMUT7-NEX_4-256 Contig Newbler v. 2.6 2013-12-04T14:28:28.747 Brazil dental plaque Illumina GA IIx JCVI 83.3x 99.3 GCF_000229725.1 AGMB01 1759 1824 1824 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229745.2 HMT-686 TCI-260 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-260 141 1799001 37.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/745/GCA_000229745.2_SMUT7-NEX_5-260 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72091 1074176 SAMN02436357 SMUT7-NEX_5-260 Contig Newbler v. 2.6 2013-12-04T14:23:05.110 Brazil dental plaque Illumina GA IIx JCVI 85.7x 99.21 GCF_000229745.1 AGMC01 1686 1751 1751 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229765.2 HMT-686 TCI-264 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-264 137 1824597 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/765/GCA_000229765.2_SMUT7-NEX_6-264 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72093 1074177 SAMN02436438 SMUT7-NEX_6-264 Contig Newbler v. 2.6 2013-12-04T14:28:23.857 Brazil dental plaque Illumina GA IIx JCVI 84.3x 99.28 GCF_000229765.1 AGMD01 1706 1777 1777 30 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229785.2 HMT-686 TCI-267 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-267 127 1819735 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/785/GCA_000229785.2_SMUT7-NEX_7-267 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72095 1074178 SAMN02436439 SMUT7-NEX_7-267 Contig Newbler v. 2.6 2013-12-04T14:28:23.910 Brazil dental plaque Illumina GA IIx JCVI 66.0x 99.21 GCF_000229785.1 AGME01 1691 1758 1758 26 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000229805.2 HMT-686 TCI-268 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-268 92 1855678 36.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/805/GCA_000229805.2_SMUT7-NEX_8-268 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72097 1074179 SAMN02436521 SMUT7-NEX_8-268 Contig Newbler v. 2.6 2013-12-04T14:28:28.800 Brazil dental plaque Illumina GA IIx JCVI 83.1x 99.33 GCF_000229805.1 AGMF01 1731 1792 1792 25 1 34 1 Streptococcus_mutans_homd_HMT_686 GCA_000229825.2 HMT-686 TCI-278 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-278 98 1856336 36.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/825/GCA_000229825.2_SMUT7-NEX_9-278 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72099 1074180 SAMN02436358 SMUT7-NEX_9-278 Contig Newbler v. 2.6 2013-12-04T14:23:05.210 Brazil dental plaque Illumina GA IIx JCVI 86.1x 99.32 GCF_000229825.1 AGMG01 1731 1795 1795 25 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000229845.2 HMT-686 TCI-279 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-279 136 1809821 36.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/845/GCA_000229845.2_SMUT7-NEX_10-279 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72101 1074181 SAMN02436440 SMUT7-NEX_10-279 Contig Newbler v. 2.6 2013-12-04T14:28:23.960 Brazil dental plaque Illumina GA IIx JCVI 91.2x 99.2 GCF_000229845.1 AGMH01 1685 1750 1750 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229865.2 HMT-686 TCI-280 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-280 119 1818786 36.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/865/GCA_000229865.2_SMUT7-NEX_11-280 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72103 1074182 SAMN02436610 SMUT7-NEX_11-280 Contig Newbler v. 2.6 2013-12-04T14:28:34.100 Brazil dental plaque Illumina GA IIx JCVI 45.4x 99.22 GCF_000229865.1 AGMI01 1694 1758 1758 26 1 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000229885.2 HMT-686 TCI-289 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-289 140 1798201 37.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/885/GCA_000229885.2_SMUT7-NEX_12-289 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72105 1074183 SAMN02436611 SMUT7-NEX_12-289 Contig Newbler v. 2.6 2013-12-04T14:28:34.153 Brazil dental plaque Illumina GA IIx JCVI 73.3x 99.21 GCF_000229885.1 AGMJ01 1682 1747 1747 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229905.2 HMT-686 TCI-292 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-292 137 1810877 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/905/GCA_000229905.2_SMUT7-NEX_21-292 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72107 1074184 SAMN02436522 SMUT7-NEX_21-292 Contig Newbler v. 2.6 2013-12-04T14:28:28.863 Brazil dental plaque Illumina GA IIx JCVI 35.2x 99.21 GCF_000229905.1 AGMK01 1688 1753 1753 26 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000229925.2 HMT-686 TCI-294 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-294 109 1891335 36.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/925/GCA_000229925.2_SMUT7-NEX_25-294 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72109 1074185 SAMN02436441 SMUT7-NEX_25-294 Contig Newbler v. 2.6 2013-12-04T14:28:24.023 Brazil dental plaque Illumina GA IIx JCVI 45.2x 99.29 GCF_000229925.1 AGML01 1759 1825 1825 26 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229945.2 HMT-686 TCI-298 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-298 136 1743498 37.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/945/GCA_000229945.2_SMUT7-NEX_34-298 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72111 1074186 SAMN02436523 SMUT7-NEX_34-298 Contig Newbler v. 2.6 2013-12-04T14:28:28.960 Brazil dental plaque Illumina GA IIx JCVI 70.7x 99.17 GCF_000229945.1 AGMM01 1626 1688 1688 25 1 35 1 Streptococcus_mutans_homd_HMT_686 GCA_000229965.2 HMT-686 TCI-30 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-30 103 1880026 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/965/GCA_000229965.2_SMUT3-NEX_6-30 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA72115 1074190 SAMN02436612 SMUT3-NEX_6-30 Contig Newbler v. 2.6 2013-12-04T14:28:34.203 Brazil dental plaque Illumina GA IIx JCVI 68.0x 99.35 GCF_000229965.1 AGMN01 1768 1834 1834 26 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000229985.2 HMT-686 TCI-399 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-399 53 1935728 36.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/229/985/GCA_000229985.2_SMUT3-NEX_1-399 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71947 1074092 SAMN02436613 SMUT3-NEX_1-399 Contig Newbler v. 2.6 2013-12-04T14:28:34.253 Brazil dental plaque Illumina GA IIx JCVI 62.2x 99.35 GCF_000229985.1 AGMO01 1814 1884 1884 31 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000230005.2 HMT-686 TCI-400 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-400 93 1869620 36.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/005/GCA_000230005.2_SMUT3-NEX_2-400 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71949 1074093 SAMN02436359 SMUT3-NEX_2-400 Contig Newbler v. 2.6 2013-12-04T14:23:05.273 Brazil dental plaque Illumina GA IIx JCVI 80.2x 99.37 GCF_000230005.1 AGMP01 1757 1820 1820 26 0 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000230025.2 HMT-686 TCI-51 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-51 57 1936890 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/025/GCA_000230025.2_SMUT3-NEX_9-51 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71955 1074100 SAMN02436360 SMUT3-NEX_9-51 Contig Newbler v. 2.6 2013-12-04T14:23:05.357 Brazil dental plaque Illumina GA IIx JCVI 52.8x 99.34 GCF_000230025.1 AGMQ01 1806 1872 1872 29 0 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000230045.2 HMT-686 TCI-62 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-62 135 1804833 36.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/045/GCA_000230045.2_SMUT3-NEX_10-62 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71957 1074101 SAMN02436361 SMUT3-NEX_10-62 Contig Newbler v. 2.6 2013-12-04T14:23:05.477 Brazil dental plaque Illumina GA IIx JCVI 69.6x 99.21 GCF_000230045.1 AGMR01 1688 1753 1753 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000230065.2 HMT-686 TCI-70 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-70 109 1855602 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/065/GCA_000230065.2_SMUT3-NEX_11-70 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71959 1074102 SAMN02436362 SMUT3-NEX_11-70 Contig Newbler v. 2.6 2013-12-04T14:23:05.630 Brazil dental plaque Illumina GA IIx JCVI 32.5x 99.29 GCF_000230065.1 AGMS01 1734 1795 1795 24 1 35 1 Streptococcus_mutans_homd_HMT_686 GCA_000230085.2 HMT-686 TCI-75 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-75 108 1879483 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/085/GCA_000230085.2_SMUT3-NEX_21-75 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71961 1074104 SAMN02436363 SMUT3-NEX_21-75 Contig Newbler v. 2.6 2013-12-04T14:23:05.910 Brazil dental plaque Illumina GA IIx JCVI 61.2x 99.35 GCF_000230085.1 AGMT01 1759 1826 1826 26 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000230105.2 HMT-686 TCI-78 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-78 110 1883089 36.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/105/GCA_000230105.2_SMUT3-NEX_25-78 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71963 1074105 SAMN02436596 SMUT3-NEX_25-78 Contig Newbler v. 2.6 2013-12-04T14:28:33.380 Brazil dental plaque Illumina GA IIx JCVI 59.1x 99.32 GCF_000230105.1 AGMU01 1764 1830 1830 26 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000230125.2 HMT-686 TCI-82 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-82 48 1941227 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/125/GCA_000230125.2_SMUT3-NEX_34-82 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71965 1074106 SAMN02436524 SMUT3-NEX_34-82 Contig Newbler v. 2.6 2013-12-04T14:28:29.060 Brazil dental plaque Illumina GA IIx JCVI 58.7x 99.36 GCF_000230125.1 AGMV01 1823 1887 1887 25 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000230145.2 HMT-686 TCI-85 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-85 64 1921849 36.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/145/GCA_000230145.2_SMUT3-NEX_50-85 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71967 1074107 SAMN02436442 SMUT3-NEX_50-85 Contig Newbler v. 2.6 2013-12-04T14:28:24.083 Brazil dental plaque Illumina GA IIx JCVI 67.9x 99.35 GCF_000230145.1 AGMW01 1796 1864 1864 27 1 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000230165.2 HMT-686 TCI-86 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-86 128 1820007 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/165/GCA_000230165.2_SMUT3-NEX_57-86 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71969 1074108 SAMN02436525 SMUT3-NEX_57-86 Contig Newbler v. 2.6 2013-12-04T14:28:29.137 Brazil dental plaque Illumina GA IIx JCVI 68.3x 99.2 GCF_000230165.1 AGMX01 1700 1764 1764 25 1 37 1 Streptococcus_mutans_homd_HMT_686 GCA_000230185.2 HMT-686 TCI-92 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-92 49 1941392 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/185/GCA_000230185.2_SMUT3-NEX_62-92 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71971 1074109 SAMN02436597 SMUT3-NEX_62-92 Contig Newbler v. 2.6 2013-12-04T14:28:33.430 Brazil dental plaque Illumina GA IIx JCVI 65.2x 99.36 GCF_000230185.1 AGMY01 1823 1888 1888 25 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000230205.2 HMT-686 TCI-96 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-96 121 1800548 37.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/205/GCA_000230205.2_SMUT3-NEX_93-96 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71973 1074111 SAMN02436526 SMUT3-NEX_93-96 Contig Newbler v. 2.6 2013-12-04T14:28:29.187 Brazil dental plaque Illumina GA IIx JCVI 69.6x 99.31 GCF_000230205.1 AGMZ01 1683 1744 1744 24 1 35 1 Streptococcus_mutans_homd_HMT_686 GCA_000230225.2 HMT-686 TCI-99 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans TCI-99 132 1814786 36.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/225/GCA_000230225.2_SMUT4-NEX_1-99 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA71975 1074112 SAMN02436527 SMUT4-NEX_1-99 Contig Newbler v. 2.6 2013-12-04T14:28:29.240 Brazil dental plaque Illumina GA IIx J. Craig Venter Institute 60.5x 99.19 GCF_000230225.1 AGNA01 1705 1771 1771 26 1 38 1 Streptococcus_mutans_homd_HMT_686 GCA_000231215.1 HMT-530 ATCC 11828 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes ATCC 11828 1 2488626 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/231/215/GCA_000231215.1_ASM23121v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA73675 1091045 SAMN02602997 ASM23121v1 Complete Genome 2014-01-30T11:19:23.836 BAYGEN 97.21 100 0 99.98 0.05 GCF_000231215.1 2308 2384 2384 23 6 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_000231235.1 HMT-681 M508 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 M508 8 2313271 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/231/235/GCA_000231235.1_Roth_muci_M508_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA38789 563033 SAMN02463763 Roth_muci_M508_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:36.883 not determined missing 454 Broad Institute 40.0x 95.23 99.33 0 100 0.05 GCF_000231235.1 ACSB01 1784 1854 1854 14 6 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_000231235.1 HMT-681 M508 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 M508 8 2313271 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/231/235/GCA_000231235.1_Roth_muci_M508_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA38789 563033 SAMN02463763 Roth_muci_M508_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:36.883 not determined missing 454 Broad Institute 40.0x 95.23 99.33 0 100 0.05 GCF_000231235.1 ACSB01 1784 1854 1854 14 6 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_000231255.1 HMT-545 F0387 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus F0387 12 2262693 42.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/231/255/GCA_000231255.1_Aggr_aphr_F0387_V1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA40689 679198 SAMN02463811 Aggr_aphr_F0387_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:42.307 not determined missing 454 Broad Institute 59.0x 96.87 99.89 0.04 100 0.07 GCF_000231255.1 ACZJ01 2090 2212 2212 56 10 55 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_000231985.2 HMT-734 4027-06 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 4027-06 7 2116267 39.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/231/985/GCA_000231985.2_ASM23198v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48921 760864 SAMN00792710 ASM23198v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Maryland 454 GS FLX Titanium Institute for Genome Sciences 33.0x 98.64 99.82 0.2 100 0.28 GCF_000231985.1 AGNW01 2108 2259 2259 77 18 55 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000232445.2 HMT-734 GA07643 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA07643 6 2127739 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/232/445/GCA_000232445.2_ASM23244v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48667 760755 SAMN00792725 ASM23244v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Georgia 454 GS FLX Titanium Institute for Genome Sciences 38.0x 98.55 98.62 0.2 100 0.41 GCF_000232445.1 AGOT01 2120 2281 2281 82 16 62 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000232645.2 HMT-734 GA16121 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA16121 7 2147028 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/232/645/GCA_000232645.2_ASM23264v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48715 760779 SAMN00792748 ASM23264v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Georgia 454 GS FLX Titanium Institute for Genome Sciences 42.0x 98.62 99.02 0.2 99.98 0.21 GCF_000232645.1 AGPD01 2186 2352 2352 83 21 61 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000232985.2 HMT-734 GA47388 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA47388 7 2140615 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/232/985/GCA_000232985.2_ASM23298v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48865 760837 SAMN00792665 ASM23298v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Georgia 454 GS FLX Titanium Institute for Genome Sciences 37.0x 98.57 GCF_000232985.1 AGPU01 2136 2302 2302 84 21 60 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000233105.2 HMT-734 GA54644 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA54644 7 2128321 39.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/233/105/GCA_000233105.2_ASM23310v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48911 760859 SAMN00792690 ASM23310v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Georgia 454 GS FLX Titanium Institute for Genome Sciences 41.0x 98.57 99.08 0.25 99.99 0.22 GCF_000233105.1 AGQA01 2161 2325 2325 83 19 61 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000233225.2 HMT-734 3063-00 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 3063-00 9 2072517 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/233/225/GCA_000233225.2_ASM23322v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48945 760876 SAMN00792655 ASM23322v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Tennessee 454 GS FLX Titanium Institute for Genome Sciences 45.0x 98.46 99.36 0.2 100 0.19 GCF_000233225.1 AGQG01 2056 2205 2205 80 12 56 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000233265.2 HMT-734 GA07228 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA07228 8 2035787 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/233/265/GCA_000233265.2_ASM23326v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48665 760754 SAMN00792724 ASM23326v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Georgia 454 GS FLX Titanium Institute for Genome Sciences 28.0x 98.78 GCF_000233265.1 AGQI01 2041 2196 2196 70 21 63 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000233305.2 HMT-734 GA19690 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA19690 7 2016753 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/233/305/GCA_000233305.2_ASM23330v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48759 760800 SAMN00792769 ASM23330v2 Contig Celera assembler v. 6.1 2012-02-27T14:30:04.073 USA: Georgia 454 GS FLX Titanium Institute for Genome Sciences 26.0x 98.82 GCF_000233305.1 AGQK01 2007 2154 2154 70 17 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000233535.1 HMT-809 F0356 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-809 Olsenella phocaeensis F0356 3 2163862 66.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/233/535/GCA_000233535.1_Olsenella_sp_F0356_V1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_I;s__Olsenella_I phocaeensis PRJNA39743 661087 SAMN02463784 Olsenella_sp_F0356_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:39.230 not determined oral cavity 454 Broad Institute 52.0x 100 0 96.3 1.29 GCF_000233535.1 ACVE01 1886 1948 1948 10 3 49 0 Olsenella_phocaeensis_homd_HMT_809 GCA_000234015.1 HMT-576 F0395 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus F0395 11 1934050 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/234/015/GCA_000234015.1_Stre_inte_F0395_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA49885 857292 SAMN02463876 Stre_inte_F0395_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:49.163 not determined 454 Broad Institute 70.0x 91.79 99.31 0.83 99.99 1.1 GCF_000234015.1 AFXN01 1896 2004 2004 41 5 61 1 Streptococcus_constellatus_homd_HMT_576 GCA_000234035.1 HMT-644 F0413 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius F0413 8 1922374 37.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/234/035/GCA_000234035.1_Stre_inte_F0413_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA52089 883167 SAMN02463882 Stre_inte_F0413_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:50.193 not determined 454 Broad Institute 48.0x 98.52 99.76 0 100 0.25 GCF_000234035.1 AFXO01 1909 2011 2011 34 5 62 1 Streptococcus_intermedius_homd_HMT_644 GCA_000234055.1 HMT-298 F0411 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola F0411 17 2992428 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/234/055/GCA_000234055.1_Prev_hist_F0411_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA49883 857291 SAMN02463875 Prev_hist_F0411_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:49.067 not determined 454 Broad Institute 33.0x 97.79 99.32 0 99.91 0.03 GCF_000234055.1 AFXP01 2455 2527 2527 13 8 50 1 Prevotella_histicola_homd_HMT_298 GCA_000234075.2 HMT-420 F0401 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis F0401 2 2514030 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/234/075/GCA_000234075.2_Fuso_nucl_F0401_V2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA41987 693991 SAMN02463835 Fuso_nucl_F0401_V2 Contig Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:44.800 not determined missing 454 Broad Institute 34.0x 91.17 100 0 100 0.56 GCF_000234075.2 ADDB02 2424 2505 2505 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_000234095.1 HMT-639 ATCC 43532 Named Cultivated Oral (Abundance: Medium) HMT-639 Selenomonas infelix ATCC 43532 30 2413634 56.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/234/095/GCA_000234095.1_Sele_infe_ATCC_43532_V1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda infelix PRJNA40695 679201 SAMN02463814 Sele_infe_ATCC_43532_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:42.613 not determined missing 454 Broad Institute 38.0x 99.65 0.05 99.96 0.07 GCF_000234095.1 ACZM01 2194 2290 2290 21 16 58 1 GCA_000234115.1 HMT-302 F0323 Named Cultivated Oral (Abundance: Medium) HMT-302 Alloprevotella rava F0323 30 2593873 45.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/234/115/GCA_000234115.1_Prevotella_sp_F0323_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella rava PRJNA40691 679199 SAMN02463812 Prevotella_sp_F0323_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:42.390 not determined oral cavity 454 Broad Institute 40.0x 96.69 99.16 0 99.47 0.05 GCF_000234115.1 ACZK01 2125 2194 2194 5 9 54 1 Alloprevotella_rava_homd_HMT_302 GCA_000234135.1 HMT-130 F0398 Named Cultivated Oral (Abundance: Medium) HMT-130 Selenomonas noxia F0398 13 2113402 55.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/234/135/GCA_000234135.1_Sele_noxi_F0398_V1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda noxia PRJNA43115 702437 SAMN02463846 Sele_noxi_F0398_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:45.950 not determined missing 454 Broad Institute 63.0x 98.35 99.31 0.17 99.99 0.37 GCF_000234135.1 ADGH01 1976 2058 2058 18 6 57 1 Selenomonas_noxia_homd_HMT_130 GCA_000235445.1 HMT-635 ATCC 51276 Named Cultivated Oral (Abundance: Medium) HMT-635 Johnsonella ignava ATCC 51276 43 2687075 36.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/235/445/GCA_000235445.1_John_igna_ATCC_51276_V1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Johnsonella;s__Johnsonella ignava PRJNA40693 679200 SAMN02463813 John_igna_ATCC_51276_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:42.490 not determined missing 454 Broad Institute 37.0x 98.3 0 97.64 0.25 GCF_000235445.1 ACZL01 2325 2410 2410 34 3 47 1 Johnsonella_ignava_homd_HMT_635 GCA_000235465.1 HMT-370 F0437 Unnamed Cultivated Oral (Abundance: Scarce) HMT-370 Fusobacterium sp. HMT-370 F0437 133 2093299 27.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/235/465/GCA_000235465.1_ASM23546v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium sp000235465 PRJNA50399 861452 SAMN02299438 ASM23546v1 Scaffold Velvet v. 1.1.04 2013-08-02T12:07:40.617 not determined Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 308.3x 100 0 99.55 1.73 GCF_000235465.1 AGAD01 2141 2198 2198 20 2 34 1 Fusobacterium_sp_HMT_370_homd_HMT_370 GCA_000235485.1 HMT-058 F0407 Unnamed Cultivated Oral (Abundance: Scarce) HMT-058 Streptococcus sp. HMT-058 F0407 22 1848904 41.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/235/485/GCA_000235485.1_ASM23548v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000235485 PRJNA50403 861455 SAMN02299440 ASM23548v1 Scaffold Velvet v. 1.1.04 2013-08-02T12:07:40.793 not determined Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 81.1x 99.02 0.2 99.96 0.01 GCF_000235485.1 AGAE01 1791 1865 1865 37 3 33 1 GCA_000237125.3 HMT-550 M013 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus M013 2 2816697 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/237/125/GCA_000237125.3_ASM23712v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA78007 1118959 SAMN02603643 ASM23712v3 Complete Genome 2014-01-30T14:21:44.340 Taiwan pus/wound National Health Research Institutes 98.64 GCF_000237125.2 2571 2774 2774 122 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000237265.1 HMT-550 LGA251 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus LGA251 2 2753827 32.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/237/265/GCA_000237265.1_ASM23726v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJEA62883 985006 SAMEA2272771 ASM23726v1 Complete Genome 2013-12-20T12:44:00.103 The Wellcome Trust Sanger Institute 98.9 98.95 0.24 100 0.16 GCF_000237265.1 2504 2694 2694 109 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000237805.1 HMT-777 DSM 22815 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-777 Jonquetella anthropi DSM 22815 1 1675934 59.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/237/805/GCA_000237805.1_ASM23780v1 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Jonquetella;s__Jonquetella anthropi PRJNA63635 885272 SAMN02261412 ASM23780v1 Chromosome Newbler v. 2.3 2013-07-19T14:58:31.733 France human cyst (55 year-old patient) 454/Illumina JGI 30.0x 100 0 99.94 0.07 GCF_000237805.1 AGRU01 1531 1600 1600 12 5 51 1 Jonquetella_anthropi_homd_HMT_777 GCA_000238055.2 HMT-934 ACB1 Named Cultivated Oral (Abundance: Medium) HMT-934 Oribacterium parvum ACB1 2 2470863 42.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/055/GCA_000238055.2_Oribacterium_sp_ACB1_V2 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium parvum PRJNA49877 796943 SAMN02463872 Oribacterium_sp_ACB1_V2 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:48.766 not determined 454 Broad Institute 37.0x 99.36 0 99.86 0.07 GCF_000238055.2 AFZC02 2127 2213 2213 23 13 49 1 Oribacterium_parvum_homd_HMT_934 GCA_000238075.1 HMT-108 ACB7 Named Cultivated Oral (Abundance: Medium) HMT-108 Oribacterium asaccharolyticum ACB7 9 2520584 43.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/075/GCA_000238075.1_Oribacterium_sp_ACB7_V1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium asaccharolyticum PRJNA49879 796944 SAMN02463873 Oribacterium_sp_ACB7_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:48.863 not determined 454 Broad Institute 29.0x 99.36 0.64 98.32 0.44 GCF_000238075.1 AFZD01 2212 2291 2291 26 6 46 1 Oribacterium_asaccharolyticum_homd_HMT_108 GCA_000238095.2 HMT-081 CM2 Unnamed Cultivated Oral (Abundance: Low) HMT-081 Peptoanaerobacter sp. HMT-081 CM2 3 2325163 30.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/095/GCA_000238095.2_Euba_bact_CM2_V2 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter;s__Peptoanaerobacter stomatis_A PRJNA49889 796937 SAMN02463878 Euba_bact_CM2_V2 Scaffold allpaths v. R39099 2013-12-18T11:11:49.463 not determined 454; Illumina Broad Institute 282.0x 94.94 97.2 0 97.4 0.12 GCF_000238095.2 AFZF02 1962 2040 2040 19 11 47 1 Peptoanaerobacter_stomatis_homd_HMT_081 GCA_000238115.1 HMT-081 ACC19a Unnamed Cultivated Oral (Abundance: Low) HMT-081 Peptoanaerobacter sp. HMT-081 ACC19a 50 2543633 30.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/115/GCA_000238115.1_Euba_bact_ACC19a_V1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter;s__Peptoanaerobacter stomatis PRJNA49887 796937 SAMN02463877 Euba_bact_ACC19a_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:49.286 not determined 454 Broad Institute 40.0x 98.95 0 99.13 0.41 GCF_000238115.1 AFZE01 2250 2326 2326 20 7 48 1 Peptoanaerobacter_stomatis_homd_HMT_081 GCA_000238135.1 HMT-081 CM5 Unnamed Cultivated Oral (Abundance: Low) HMT-081 Peptoanaerobacter sp. HMT-081 CM5 92 2596720 30.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/135/GCA_000238135.1_Eubact_bact_CM5_V1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter;s__Peptoanaerobacter stomatis PRJNA49891 796937 SAMN02463879 Eubact_bact_CM5_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:49.620 not determined 454 Broad Institute 39.0x 97.95 98.6 0.35 98.62 1.69 GCF_000238135.1 AFZG01 2259 2337 2337 22 7 48 1 Peptoanaerobacter_stomatis_homd_HMT_081 GCA_000238215.1 HMT-613 92A2 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia 92A2 1 3405521 46.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/215/GCA_000238215.1_ASM23821v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJNA319 203275 SAMN02604009 ASM23821v1 Complete Genome Celera Assembler v. 1.x 2014-01-30T14:54:15.157 USA: Massachusetts periodontal pocket Sanger TIGR 12.0x 98.67 98.91 0 99.95 0.38 GCF_000238215.1 2843 2923 2923 27 6 46 1 Tannerella_forsythia_homd_HMT_613 GCA_000238755.1 HMT-433 10_1_50 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 10_1_50 13 1895632 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/755/GCA_000238755.1_Campylobacter_sp_10_1_50_V1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJNA40015 665939 SAMN02463793 Campylobacter_sp_10_1_50_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:40.257 not determined missing 454 Broad Institute 48.0x 99.32 0 99.97 0.15 GCF_000238755.1 ACWJ01 1906 1956 1956 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_000238755.1 HMT-433 10_1_50 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 10_1_50 13 1895632 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/755/GCA_000238755.1_Campylobacter_sp_10_1_50_V1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJNA40015 665939 SAMN02463793 Campylobacter_sp_10_1_50_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:40.257 not determined missing 454 Broad Institute 48.0x 99.32 0 99.97 0.15 GCF_000238755.1 ACWJ01 1906 1956 1956 4 2 43 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_000238795.2 HMT-944 CCUG 13788 Named Cultivated Oral (Abundance: Medium) HMT-944 Haemophilus sputorum CCUG 13788 87 2143543 39.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/795/GCA_000238795.2_ASM23879v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A sputorum PRJNA67089 1035839 SAMN02393707 ASM23879v2 Contig Newbler Metrics v. 2.3 2013-11-05T14:39:46.073 Denmark: Aarhus University Hos 454 BiRC 77.0x GCF_000238795.1 AFNK01 2006 2099 2099 41 4 47 1 Haemophilus_sputorum_homd_HMT_944 GCA_000238835.1 HMT-418 F0439 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-418 Lentilactobacillus parafarraginis F0439 165 2854910 45.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/238/835/GCA_000238835.1_ASM23883v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus parafarraginis PRJNA49691 797515 SAMN02299435 ASM23883v1 Scaffold Velvet v. 1.1.04 2013-08-02T12:07:40.350 not determined Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 184.9x 97.56 99.06 1.46 99.73 4.27 GCF_000238835.1 AGEY01 2878 2972 2972 47 1 45 1 Lentilactobacillus_parafarraginis_homd_HMT_418 GCA_000239235.1 HMT-550 11819-97 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 11819-97 2 2868863 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/239/235/GCA_000239235.1_ASM23923v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA78269 1123523 SAMN02603886 ASM23923v1 Complete Genome 2014-01-30T14:54:04.750 Denmark abscess on lower extremity Statens Serum Institut 98.99 99.51 0.08 100 0.21 GCF_000239235.1 2647 2835 2835 111 16 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_000239275.1 HMT-121 F0357 Named Cultivated Oral (Abundance: Medium) HMT-121 Anaeroglobus geminatus F0357 57 1798854 49.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/239/275/GCA_000239275.1_ASM23927v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus geminatus PRJNA50397 861450 SAMN02299437 ASM23927v1 Scaffold Velvet v. 1.1.04 2013-08-02T12:07:40.520 not determined Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 293.5x 98.56 0.07 88.17 1.36 GCF_000239275.1 AGCJ01 1927 2004 2004 27 2 47 1 Anaeroglobus_geminatus_homd_HMT_121 GCA_000239355.1 HMT-540 F0432 Named Cultivated Oral (Abundance: Medium) HMT-540 Cardiobacterium valvarum F0432 98 2553535 58.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/239/355/GCA_000239355.1_ASM23935v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium valvarum PRJNA49689 797473 SAMN02299434 ASM23935v1 Scaffold Velvet v. 1.1.03 2013-08-02T12:07:40.270 not determined Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 179.5x 96.67 97.25 0 89.81 0.83 GCF_000239355.1 AGCM01 2522 2586 2586 14 4 45 1 Cardiobacterium_valvarum_homd_HMT_540 GCA_000239695.1 HMT-866 C83 Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii C83 10 2205725 57.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/239/695/GCA_000239695.1_Acti_grae_C83_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJNA38761 435830 SAMN02463758 Acti_grae_C83_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:36.137 not determined missing 454 Broad Institute 34.0x 100 0.95 99.46 0.72 GCF_000239695.1 ACRN01 1848 1917 1917 10 7 51 1 Actinomyces_graevenitzii_homd_HMT_866 GCA_000239715.1 HMT-849 F0330 Named Cultivated Oral (Abundance: Medium) HMT-849 Actinomyces johnsonii F0330 76 3459374 67.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/239/715/GCA_000239715.1_Actinomyces_sp_F0330_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces johnsonii PRJNA39355 653386 SAMN02463764 Actinomyces_sp_F0330_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:36.990 not determined missing 454 Broad Institute 21.0x 95.5 1.42 99.6 0.22 GCF_000239715.1 ACTB01 2894 2971 2971 16 7 53 1 Actinomyces_johnsonii_homd_HMT_849 GCA_000240015.1 HMT-530 P.acn33 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P.acn33 1 2489623 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/240/015/GCA_000240015.1_ASM24001v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA76699 1114966 SAMN02602998 ASM24001v1 Complete Genome 2014-01-30T11:19:23.893 BAYGEN 99.53 99.43 0.03 99.99 0.17 GCF_000240015.1 2299 2377 2377 22 9 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_000240035.1 HMT-530 P.acn17 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P.acn17 1 2522885 60.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/240/035/GCA_000240035.1_ASM24003v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA76701 1114967 SAMN02602999 ASM24003v1 Complete Genome 2014-01-30T11:19:23.970 BAYGEN 99.54 98.91 0.03 99.99 0.41 GCF_000240035.1 2323 2401 2401 21 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_000240055.1 HMT-530 P.acn31 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P.acn31 1 2498766 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/240/055/GCA_000240055.1_ASM24005v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA76703 1114969 SAMN02603000 ASM24005v1 Complete Genome 2014-01-30T11:19:24.010 BAYGEN 99.55 99.43 0.03 99.99 0.2 GCF_000240055.1 2295 2373 2373 21 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_000241025.2 HMT-531 ANH9381 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans ANH9381 1 2136808 44.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/241/025/GCA_000241025.2_ASM24102v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA47337 754507 SAMN02603044 ASM24102v2 Complete Genome 2014-01-30T11:19:27.923 subgingival plaque sample of a peridontally non-diseased subject Bumgarner laboratory, Department of Microbiology, University of Washington 99.07 99.55 0 100 0.2 GCF_000241025.1 2091 2220 2220 58 18 52 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_000241525.2 HMT-858 ATCC 11996 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-858 Comamonas testosteroni ATCC 11996 63 5410155 61.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/241/525/GCA_000241525.2_ASM24152v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas testosteroni PRJNA66095 1009852 SAMN02470044 ASM24152v2 Contig Newbler v. 2.3 2013-12-19T13:09:53.630 454 FLX Titanium Institute of Toxicology and Pharmacology for Natural Scientists, University Medical School, Schleswig-Holstein, Campus Kiel 20.9x 99.99 GCF_000241525.1 AHIL01 4872 4982 4982 35 3 71 1 Comamonas_testosteroni_homd_HMT_858 GCA_000241915.1 HMT-591 INCA 402 Named Cultivated Pathogen (Abundance: Scarce) HMT-591 Corynebacterium diphtheriae INCA 402 1 2449071 53.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/241/915/GCA_000241915.1_ASM24191v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae PRJNA42419 698972 SAMN02603075 ASM24191v1 Complete Genome 2014-01-30T11:19:29.970 Center for Biotechnology, Bielefeld University 98.38 99.45 0.44 100 0.73 GCF_000241915.1 2296 2374 2374 11 16 50 1 Corynebacterium_diphtheriae_homd_HMT_591 GCA_000242235.1 HMT-419 ACC2 Named Cultivated Oral (Abundance: Medium) HMT-419 Stomatobaculum longum ACC2 5 2313632 55.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/242/235/GCA_000242235.1_Lach_bact_ACC2_V1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Moryella;s__Moryella longum PRJNA49875 796942 SAMN02463871 Lach_bact_ACC2_V1 Scaffold ALLPATHS v. R37654 2013-12-18T11:11:48.646 not determined Illumina Broad Institute 200.0x 98.73 0.63 100 0.56 GCF_000242235.1 AGEL01 2066 2155 2155 17 17 54 1 Stomatobaculum_longum_homd_HMT_419 GCA_000242275.1 HMT-424 F0435 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-424 Lentilactobacillus kisonensis F0435 86 2987059 41.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/242/275/GCA_000242275.1_ASM24227v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus kisonensis PRJNA49693 797516 SAMN02299436 ASM24227v1 Scaffold Velvet v. 1.1.04 2013-08-02T12:07:40.450 not determined Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 191.6x 99.6 99.81 0.52 93.77 2.16 GCF_000242275.1 AGRJ01 2977 3063 3063 38 3 44 1 Lentilactobacillus_kisonensis_homd_HMT_424 GCA_000242295.1 HMT-851 F0397 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus F0397 21 1838618 38.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/242/295/GCA_000242295.1_ASM24229v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus sp000242295 PRJNA48495 762965 SAMN02299433 ASM24229v1 Scaffold Velvet v. 1.1.02 2013-08-02T12:07:40.170 not determined Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 257.0x 99.66 0 100 0 GCF_000242295.1 AGRK01 1715 1791 1791 29 4 42 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_000242315.1 HMT-082 F0431 Named Cultivated Oral (Abundance: Medium) HMT-082 Lachnoanaerobaculum orale F0431 96 2945844 37.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/242/315/GCA_000242315.1_ASM24231v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum orale PRJNA50401 861454 SAMN02299439 ASM24231v1 Scaffold Velvet v. 1.1.04 2013-08-02T12:07:40.713 not determined Illumina Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 195.2x 98.73 0 94.95 1.01 GCF_000242315.1 AGRL01 2942 3007 3007 17 1 46 1 Lachnoanaerobaculum_orale_homd_HMT_082 GCA_000242335.3 HMT-583 DSM 3688 Named Cultivated Oral (Abundance: Scarce) HMT-583 Hallella dentalis DSM 3688 4 3350206 55.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/242/335/GCA_000242335.3_ASM24233v3 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella seregens PRJNA56077 908937 SAMN02232045 ASM24233v3 Complete Genome Newbler v. 2.3 2013-07-12T10:59:50.710 Missing dental root canal 454/Illumina DOE Joint Genome Institute 30.0x 99.99 GCF_000242335.1 2640 2727 2727 7 15 64 1 Hallella_dentalis_homd_HMT_583 GCA_000242675.1 HMT-105 F0142 Named Cultivated Oral (Abundance: Low) "HMT-105 Peptostreptococcaceae [G1 ""Eubacterium""] infirmum F0142" 13 1910927 40.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/242/675/GCA_000242675.1_Euba_infi_F0142_V1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B infirmum PRJNA52085 883109 SAMN02463880 Euba_infi_F0142_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:49.787 not determined 454 Broad Institute 20.0x 100 0 98.62 0.04 GCF_000242675.1 AGWI01 1733 1810 1810 29 4 43 1 Anaerovoracaceae__G1__infirmum_homd_HMT_105 GCA_000242975.1 HMT-420 OT 420 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis OT 420 4 2424697 27.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/242/975/GCA_000242975.1_Fuso_nucl_OT_420_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA64879 999414 SAMN02463936 Fuso_nucl_OT_420_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:57.366 not determined Illumina Broad Institute 339.0x 96.78 100 0 100 0.34 GCF_000242975.1 AGEH01 2282 2347 2347 18 7 39 1 Fusobacterium_animalis_homd_HMT_420 GCA_000243015.1 HMT-289 OT 289 Named Cultivated Oral (Abundance: Medium) HMT-289 Segatella maculosa OT 289 21 3151214 47.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/243/015/GCA_000243015.1_Prev_macu_OT_289_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella maculosa PRJNA64895 999422 SAMN02463943 Prev_macu_OT_289_V1 Scaffold Newbler v. 2.1-PreRelease-4/28/2009 2013-12-18T11:11:58.066 not determined Illumina Broad Institute 300.0x 97.24 99.32 0 99.45 0.06 GCF_000243015.1 AGEK01 2560 2624 2624 7 6 50 1 Segatella_maculosa_homd_HMT_289 GCA_000243035.1 HMT-378 F0438 Named Cultivated Oral (Abundance: Low) HMT-378 Prevotella micans F0438 12 2487950 45.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/243/035/GCA_000243035.1_Prev_mica_F0438_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella micans PRJNA52087 883158 SAMN02463881 Prev_mica_F0438_V1 Scaffold Newbler v. 2.3-PostRelease-11/19/2009 2013-12-18T11:11:49.987 not determined 454 Broad Institute 51.0x 99.97 99.29 0 99.52 0.15 GCF_000243035.1 AGWK01 2027 2084 2084 5 6 45 1 Prevotella_micans_homd_HMT_378 GCA_000245495.1 HMT-550 VC40 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus VC40 1 2692570 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/245/495/GCA_000245495.1_ASM24549v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA66591 1028799 SAMN02603393 ASM24549v1 Complete Genome 2014-01-30T14:21:26.487 Germany Institute of Medical Microbiology, Immunology and Parasitology (IMMIP), University of Bonn, Sigmund-Freud-Str. 25, 53105 Bonn, Germany 99.97 99.37 0.08 100 0.08 GCF_000245495.1 2440 2629 2629 110 16 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_000245815.1 HMT-813 ATCC 51524 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum ATCC 51524 2 1862135 40.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/245/815/GCA_000245815.1_Dolo_pigr_ATCC_51524_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA52171 883103 SAMN02463904 Dolo_pigr_ATCC_51524_V1 Scaffold ALLPATHS v. R37654 2013-12-18T11:11:53.793 not determined Illumina Broad Institute 200.0x 99.99 99.18 2.45 99.77 0.33 GCF_000245815.1 AGEF01 1684 1753 1753 36 9 23 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_000246925.2 HMT-784 1-13 Named Cultivated Nasal (Abundance: High) HMT-784 Peptoniphilus lacydonensis 1-13 56 1885265 29.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/246/925/GCA_000246925.2_ASM24692v2 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacydonensis PRJDB39 875454 SAMD00036609 ASM24692v2 Contig Newbler v. 2.6 2015-09-16T16:10:27.000 454 Korea Research Institute of Bioscience and Biotechnology 52.0x GCF_000246925.1 BAEW01 1802 1877 1877 33 4 37 1 Peptoniphilus_lacydonensis_homd_HMT_784 GCA_000247225.2 HMT-128 VCU139 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis VCU139 69 2524140 33.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/247/225/GCA_000247225.2_ASM24722v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA53775 904346 SAMN02436593 ASM24722v2 Contig Newbler v. 2.5.3 2013-12-04T14:28:33.217 454 J. Craig Venter Institute 22.0x 99.41 GCF_000247225.1 AHLK01 2403 2552 2552 86 4 58 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_000248355.2 HMT-005 NCTC 5866 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-005 Acinetobacter lwoffii NCTC 5866 252 3353128 43.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/248/355/GCA_000248355.2_ASM24835v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter lwoffii PRJNA62417 981327 SAMN02471600 ASM24835v2 Contig Newbler v. 2.5 2013-12-19T13:43:23.513 France: Paris 454 Titanium University of Birmingham 14.0x 99.97 99.57 0.27 99.95 0.12 GCF_000248355.1 AIEL01 3242 3360 3360 22 10 85 1 Acinetobacter_lwoffii_homd_HMT_005 GCA_000251085.2 HMT-734 ST556 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae ST556 1 2150813 39.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/251/085/GCA_000251085.2_ASM25108v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA80663 1130804 SAMN02604071 ASM25108v2 Complete Genome RS_HGAP_Assembly.2 module of SMRT Analysis v. 2.3.0 2014-01-30T14:54:20.156 USA: Ohio middle ear fluid sample PacBio RS II; 454 GS 20; ABI PRISM 3100 Tsinghua University 586.0x 98.58 99.42 0.2 100 0.22 GCF_000251085.2 2132 2285 2285 82 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000251385.2 HMT-734 GA07914 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA07914 8 2046314 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/251/385/GCA_000251385.2_ASM25138v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48669 760756 SAMN00632920 ASM25138v2 Contig Celera assembler v. 6.1 2011-07-11T16:26:05.623 454 GS FLX Titanium Institute for Genome Sciences 44.0x 98.72 GCF_000251385.1 AIKO01 1997 2147 2147 64 20 65 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000251565.2 HMT-734 GA18068 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA18068 8 2165361 39.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/251/565/GCA_000251565.2_ASM25156v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48745 760794 SAMN00717552 ASM25156v2 Contig Celera assembler v. 6.1 2011-09-15T15:42:05.607 454 GS FLX Titanium Institute for Genome Sciences 32.0x 98.72 GCF_000251565.1 AIKR01 2139 2304 2304 87 19 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000251605.2 HMT-734 GA19923 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA19923 8 2094269 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/251/605/GCA_000251605.2_ASM25160v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48761 760801 SAMN00668055 ASM25160v2 Contig Celera assembler v. 6.1 2011-07-14T16:10:26.277 454 GS FLX Titanium Institute for Genome Sciences 35.0x 98.57 99.32 0.2 100 0.4 GCF_000251605.1 AIKC01 2083 2250 2250 80 20 66 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000251805.2 HMT-734 GA47210 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA47210 7 2122377 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/251/805/GCA_000251805.2_ASM25180v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48849 760830 SAMN00718792 ASM25180v2 Contig Celera assembler v. 6.1 2011-09-16T09:16:04.537 454 GS FLX Titanium Institute for Genome Sciences 31.0x 98.65 GCF_000251805.1 AIKY01 2104 2258 2258 83 14 56 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000251825.2 HMT-734 GA47461 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA47461 7 2047242 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/251/825/GCA_000251825.2_ASM25182v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48867 760838 SAMN00717580 ASM25182v2 Contig Celera assembler v. 6.1 2011-09-15T17:04:06.107 454 GS FLX Titanium Institute for Genome Sciences 38.0x 98.57 GCF_000251825.1 AIKZ01 1983 2129 2129 68 17 60 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000251945.2 HMT-734 GA49194 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA49194 4 2093149 39.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/251/945/GCA_000251945.2_ASM25194v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48895 760852 SAMN00718785 ASM25194v2 Contig Celera assembler v. 6.1 2011-09-15T17:18:05.460 454 GS FLX Titanium Institute for Genome Sciences 32.0x 98.59 GCF_000251945.1 AILE01 2059 2209 2209 71 19 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000252065.2 HMT-734 4075-00 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 4075-00 8 2084867 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/252/065/GCA_000252065.2_ASM25206v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48939 760873 SAMN00632922 ASM25206v2 Contig Celera assembler v. 6.1 2011-07-11T16:32:06.040 454 GS FLX Titanium Institute for Genome Sciences 32.0x 98.49 GCF_000252065.1 AIKE01 2038 2195 2195 80 18 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000252205.2 HMT-734 GA02506 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA02506 8 2049637 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/252/205/GCA_000252205.2_ASM25220v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA70985 1069626 SAMN00722746 ASM25220v2 Contig Celera assembler v. 6.1 2011-09-21T16:35:04.720 454 GS FLX Titanium Institute for Genome Sciences 32.0x 98.54 GCF_000252205.1 AILJ01 2036 2191 2191 70 15 69 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000252225.2 HMT-734 England14-9 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae England14-9 8 2087621 39.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/252/225/GCA_000252225.2_ASM25222v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA70983 1069625 SAMN00718798 ASM25222v2 Contig Celera assembler v. 6.1 2011-09-16T11:46:03.643 454 GS FLX Titanium Institute for Genome Sciences 58.0x 98.61 GCF_000252225.1 AILI01 2035 2179 2179 78 11 54 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000252245.2 HMT-734 GA05578 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA05578 7 2107559 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/252/245/GCA_000252245.2_ASM25224v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA70979 1069623 SAMN00722745 ASM25224v2 Contig Celera assembler v. 6.1 2011-09-21T16:17:07.863 454 GS FLX Titanium Institute for Genome Sciences 32.0x 98.54 GCF_000252245.1 AILH01 2114 2255 2255 72 13 55 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000252265.2 HMT-734 NP141 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae NP141 9 2056675 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/252/265/GCA_000252265.2_ASM25226v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48959 760883 SAMN00721740 ASM25226v2 Contig Celera assembler v. 6.1 2011-09-19T18:26:05.550 454 GS FLX Titanium Institute for Genome Sciences 30.0x 98.67 GCF_000252265.1 AILG01 2013 2162 2162 76 13 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000253135.1 HMT-550 ECT-R 2 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus ECT-R 2 3 2759052 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/253/135/GCA_000253135.1_ASM25313v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJEA52833 889933 SAMEA2271964 ASM25313v1 Complete Genome 2013-12-20T12:42:41.843 Sweden:Linkoping human wound secretion The Norwegian High-Throughput Sequencing Centre 98.97 99.51 0.08 100 0.09 GCF_000253135.1 2503 2699 2699 118 16 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000253155.1 HMT-707 Uo5 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis Uo5 1 1958690 41.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/253/155/GCA_000253155.1_ASM25315v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_L PRJEA60241 927666 SAMEA2272261 ASM25315v1 Complete Genome 2013-12-20T12:43:14.333 Nano+Bio Center, University of Kaiserslautern 94.37 99.74 0.2 99.98 0.03 GCF_000253155.1 1865 1980 1980 41 12 61 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_000253155.1 HMT-707 Uo5 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis Uo5 1 1958690 41.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/253/155/GCA_000253155.1_ASM25315v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_L PRJEA60241 927666 SAMEA2272261 ASM25315v1 Complete Genome 2013-12-20T12:43:14.333 Nano+Bio Center, University of Kaiserslautern 94.37 99.74 0.2 99.98 0.03 GCF_000253155.1 1865 1980 1980 41 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_000253215.1 HMT-669 WUE 2594 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis WUE 2594 1 2227255 51.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/253/215/GCA_000253215.1_ASM25321v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJEA61527 942513 SAMEA2272690 ASM25321v1 Complete Genome 2013-12-20T12:43:52.700 Bielefeld Univeristy - Center for Biotechnology (CeBiTec) 99.14 99.62 0.21 99.99 0.02 GCF_000253215.1 2125 2235 2235 42 12 55 1 Neisseria_meningitidis_homd_HMT_669 GCA_000253315.1 HMT-755 JIM8777 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius JIM8777 1 2210574 40.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/253/315/GCA_000253315.1_ASM25331v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJEA67171 347253 SAMEA2272047 ASM25331v1 Complete Genome 2013-12-20T12:42:51.880 Institut National de la Recherche Agronomique (INRA) 96.27 99.84 0.15 100 0.06 GCF_000253315.1 1970 2090 2090 33 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_000253335.1 HMT-755 CCHSS3 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius CCHSS3 1 2217184 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/253/335/GCA_000253335.1_ASM25333v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJEA67173 1048332 SAMEA2272545 ASM25333v1 Complete Genome 2013-12-20T12:43:37.740 Institut National de la Recherche Agronomique (INRA) 95.76 100 0.21 99.99 0.51 GCF_000253335.1 2004 2135 2135 44 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_000255635.1 HMT-646 PYKK081 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae PYKK081 94 2097547 47.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/255/635/GCA_000255635.1_ASM25563v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA85111 1150867 SAMN02470276 ASM25563v1 Scaffold Velvet v. 0.7.55; SOLiD de novo accessory tools v. 2.0 2013-12-19T13:10:10.566 Israel ankle joint of an 8 month old boy with septic arthritis 454; SOLiD Los Alamos National Laboratory 84.6x 98.5 98.98 0.54 100 0.56 GCF_000255635.1 AJGB01 2088 2166 2166 18 9 50 1 Kingella_kingae_homd_HMT_646 GCA_000256645.1 HMT-734 SV36 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SV36 9 2156372 39.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/256/645/GCA_000256645.1_ASM25664v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA28499 497739 SAMN02393735 ASM25664v1 Contig 454 Newbler v. 1.1.02.15 2013-11-05T15:57:08.423 USA: AIDS clinic of St. Vincen nasopharynx 454 Life Sciences FLX Center for Genomic Sciences 25.9x 98.61 99.02 0.6 100 0.24 GCF_000256645.1 ADNO01 2128 2287 2287 87 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000257275.1 HMT-574 P12b Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-574 Escherichia coli P12b 1 4935294 50.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/257/275/GCA_000257275.1_ASM25727v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli PRJNA59455 910348 SAMN02603904 ASM25727v1 Complete Genome 2014-01-30T14:54:06.193 TEDA School of Biological Sciences and Biotechnology, Nankai University 99.19 99.9 0.06 100 0.29 GCF_000257275.1 4811 5194 5194 275 22 85 1 Escherichia_coli_homd_HMT_574 GCA_000257705.1 HMT-494 F0468 Named Cultivated Oral (Abundance: Medium) HMT-494 Lachnoanaerobaculum saburreum F0468 143 3074086 36.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/257/705/GCA_000257705.1_EsaburreumF0468v1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum saburreum PRJNA75151 1095750 SAMN00761826 EsaburreumF0468v1.0 Contig Celera Assembler v. 6.1 2011-12-05T15:19:06.617 not determined Illumina J. Craig Venter Institute 228.0x 97.81 99.36 0 98.03 0.41 GCF_000257705.1 AJGH01 2897 2961 2961 17 0 46 1 Lachnoanaerobaculum_saburreum_homd_HMT_494 GCA_000257765.1 HMT-543 CCUG 39159 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus CCUG 39159 83 2294730 38.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/257/765/GCA_000257765.1_ASM25776v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus whileyi PRJNA75125 1095729 SAMN00761791 ASM25776v1 Contig Celera Assembler v. 6.1 2011-12-05T13:53:08.347 not determined Illumina J. Craig Venter Institute 91.9x 94.98 100 1.3 99.92 0.52 GCF_000257765.1 AICP01 2223 2321 2321 51 7 39 1 Streptococcus_anginosus_homd_HMT_543 GCA_000257785.1 HMT-576 SK53 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus SK53 54 1840061 37.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/257/785/GCA_000257785.1_ASM25778v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA75127 1095730 SAMN00761792 ASM25778v1 Contig Newbler v. 2.6 2011-12-05T14:01:06.847 not determined Illumina J. Craig Venter Institute 28.7x 99.99 99 0.35 99.97 0.12 GCF_000257785.1 AICQ01 1756 1851 1851 59 3 32 1 Streptococcus_constellatus_homd_HMT_576 GCA_000257825.1 HMT-425 ATCC BAA-960 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae ATCC BAA-960 253 2085749 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/257/825/GCA_000257825.1_ASM25782v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA75131 889205 SAMN00761794 ASM25782v1 Contig Newbler v. 2.6 2011-12-05T14:12:04.596 not determined Illumina J. Craig Venter Institute 27.5x 99.99 99.42 0.2 99.98 0.03 GCF_000257825.1 AICS01 2034 2121 2121 57 3 26 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_000257845.1 HMT-071 SK1074 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SK1074 20 1853895 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/257/845/GCA_000257845.1_ASM25784v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA75133 1095738 SAMN00761796 ASM25784v1 Contig Newbler v. 2.6 2011-12-05T14:18:03.973 not determined Illumina J. Craig Venter Institute 28.5x 93.31 99.77 0.2 100 0.02 GCF_000257845.1 AICT01 1753 1822 1822 36 3 29 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000257845.1 HMT-071 SK1074 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SK1074 20 1853895 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/257/845/GCA_000257845.1_ASM25784v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA75133 1095738 SAMN00761796 ASM25784v1 Contig Newbler v. 2.6 2011-12-05T14:18:03.973 not determined Illumina J. Craig Venter Institute 28.5x 93.31 99.77 0.2 100 0.02 GCF_000257845.1 AICT01 1753 1822 1822 36 3 29 1 Streptococcus_oralis_HMT_071_398_707 GCA_000257925.1 HMT-306 F0472 Named Cultivated Oral (Abundance: High) HMT-306 Prevotella vespertina F0472 74 2945767 41.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/257/925/GCA_000257925.1_PspF0472v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella vespertina PRJNA75153 1095752 SAMN00761833 PspF0472v1.0 Contig Celera Assembler v. 6.1 2011-12-05T15:24:04.807 not determined Illumina J. Craig Venter Institute 135.0x 99.32 0 99.9 0.1 GCF_000257925.1 AJIN01 2465 2532 2532 10 7 49 1 Prevotella_vespertina_homd_HMT_306 GCA_000258205.1 HMT-188 F0474 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria F0474 50 2584293 56.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/258/205/GCA_000258205.1_RaeriaF0474v1.0 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA78909 1125724 SAMN00792226 RaeriaF0474v1.0 Contig Newbler v. 2.6 2012-02-23T16:16:16.900 not determined Illumina 35.0x 97.41 98.34 0 100 0.05 GCF_000258205.1 AJJQ01 2239 2301 2301 13 2 46 1 Rothia_aeria_homd_HMT_188 GCA_000258265.1 HMT-425 SK674 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae SK674 109 2078115 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/258/265/GCA_000258265.1_SpseudopneumoniaeSK674v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA75159 1095734 SAMN00761851 SpseudopneumoniaeSK674v1.0 Contig Celera Assembler v. 6.1 2011-12-05T15:46:04.537 not determined Illumina J. Craig Venter Institute 182.0x 98.84 98.89 0.3 99.89 0.05 GCF_000258265.1 AJKE01 2028 2127 2127 66 0 32 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_000258405.1 HMT-982 JCM 16511 Named Cultivated Taxonomic Reference (Abundance: Scarce) HMT-982 Ignavibacterium album JCM 16511 1 3658997 33.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/258/405/GCA_000258405.1_ASM25840v1 d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__Ignavibacterium;s__Ignavibacterium album PRJNA61811 945713 SAMN02603949 ASM25840v1 Complete Genome 2014-01-30T14:54:09.166 The Pennsylvania State University 98.86 0 99.95 0.05 GCF_000258405.1 3140 3198 3198 9 3 45 1 GCA_000258445.1 HMT-644 SK54 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius SK54 17 1910718 37.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/258/445/GCA_000258445.1_SintermediusSK54v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA75155 1095731 SAMN00761834 SintermediusSK54v1.0 Contig Newbler v. 2.6 2011-12-05T15:30:04.703 not determined Illumina J. Craig Venter Institute 27.0x 99.99 100 0 100 0.21 GCF_000258445.1 AJKN01 1830 1895 1895 32 3 29 1 Streptococcus_intermedius_homd_HMT_644 GCA_000258685.1 HMT-550 71193 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 71193 1 2715000 32.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/258/685/GCA_000258685.1_ASM25868v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA66999 1155084 SAMN02603419 ASM25868v1 Chromosome 2014-01-30T14:21:28.493 USA Integrated Genomics 97.78 99.51 0.08 100 0.33 GCF_000258685.1 2472 2656 2656 107 18 58 1 Staphylococcus_aureus_homd_HMT_550 GCA_000258845.1 HMT-812 CCUG 17874 Named Cultivated Gastrointestinal Tract (Abundance: Low) HMT-812 Helicobacter pylori CCUG 17874 163 1600513 39.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/258/845/GCA_000258845.1_ASM25884v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori PRJNA76569 102618 SAMN02472263 ASM25884v1 Contig Velvet v. 1.2.01 2013-12-19T14:14:26.770 Australia gastric antrum sample from patient Illumina GA IIx Microbiology Dept, University College Cork 120.0x 99.92 99.22 0.95 99.95 2.3 GCF_000258845.1 AIHX01 1520 1570 1570 11 2 36 1 Helicobacter_pylori_homd_HMT_812 GCA_000259315.1 HMT-433 UNSWCD Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 UNSWCD 86 1778912 39.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/259/315/GCA_000259315.1_ASM25931v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJNA60429 929793 SAMN02471189 ASM25931v1 Contig Velvet v. 1.0.09 2013-12-19T13:34:51.023 Australia intestinal biopsy Solexa University of New South Wales 200.0x 88.7 99.51 0.68 99.94 0.1 GCF_000259315.1 AENQ01 1767 1807 0 4 2 33 1 Campylobacter_concisus_HMT_433_575 GCA_000259315.1 HMT-433 UNSWCD Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 UNSWCD 86 1778912 39.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/259/315/GCA_000259315.1_ASM25931v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJNA60429 929793 SAMN02471189 ASM25931v1 Contig Velvet v. 1.0.09 2013-12-19T13:34:51.023 Australia intestinal biopsy Solexa University of New South Wales 200.0x 88.7 99.51 0.68 99.94 0.1 GCF_000259315.1 AENQ01 1767 1807 0 4 2 33 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_000259485.1 HMT-718 HK262 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae HK262 68 2107814 39.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/259/485/GCA_000259485.1_HparainfluenzaeHK262v1.0 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AD PRJNA75173 1095745 SAMN00761858 HparainfluenzaeHK262v1.0 Contig Newbler v. 2.6 2011-12-05T16:21:06.787 not determined Illumina J. Craig Venter Institute 28.0x 95.4 99.77 0 100 0.01 GCF_000259485.1 AJMW01 1977 2043 2043 25 3 37 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_000259915.1 HMT-531 RhAA1 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans RhAA1 11 2233070 44.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/259/915/GCA_000259915.1_ASM25991v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans_A PRJNA73527 1089447 SAMN02471881 ASM25991v1 Contig Newbler v. 2.3 2013-12-19T13:43:40.673 buccal swab 454 GS FLX Titanium University of Medicine and Dentistry of New Jersey 75.0x 93.91 99.58 0 100 0.54 GCF_000259915.1 AHGR01 2143 2258 2258 68 1 46 0 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_000260655.1 HMT-764 VK64 Named Cultivated Oral (Abundance: High) HMT-764 Neisseria sicca VK64 210 2638449 51.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/260/655/GCA_000260655.1_NsiccaVK64v1.0 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sicca_B PRJNA75141 1095748 SAMN00761806 NsiccaVK64v1.0 Contig Celera Assembler v. 6.1 2011-12-05T14:46:04.407 not determined Illumina J. Craig Venter Institute 161.2x 96.81 98.53 0.49 99.95 0.05 GCF_000260655.1 AJMT01 2394 2459 2459 18 1 45 1 Neisseria_sicca_homd_HMT_764 GCA_000260675.1 HMT-035 HK411 Named Cultivated Oral (Abundance: High) HMT-035 Haemophilus paraphrohaemolyticus HK411 78 2021208 40.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/260/675/GCA_000260675.1_HparaphrohaemolyticusHK411v1.0 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A paraphrohaemolyticus PRJNA75147 1095743 SAMN00761819 HparaphrohaemolyticusHK411v1.0 Contig Newbler v. 2.6 2011-12-05T15:11:06.280 not determined Illumina J. Craig Venter Institute 32.8x 99.99 99.32 0.23 100 0 GCF_000260675.1 AJMU01 1948 2020 2020 25 3 43 1 Haemophilus_paraphrohaemolyticus_homd_HMT_035 GCA_000260715.1 HMT-895 ATCC 25527 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-895 Bifidobacterium animalis ATCC 25527 1 1932693 60.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/260/715/GCA_000260715.1_ASM26071v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis PRJNA41423 703613 SAMN02603717 ASM26071v1 Complete Genome 2014-01-30T14:21:48.303 Penn State University, Department of Food Science 99.98 100 0 99.96 0.5 GCF_000260715.1 1543 1616 1616 8 11 53 1 Bifidobacterium_animalis_homd_HMT_895 GCA_000260755.1 HMT-638 ATCC 700779 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 ATCC 700779 53 1857230 39.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/260/755/GCA_000260755.1_SinfantisSK959v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis PRJNA158721 889204 SAMN00761850 SinfantisSK959v1.0 Contig Celera Assembler v. 6.1 2011-12-05T15:40:04.937 not determined Illumina J. Craig Venter Institute 274.0x 99.98 98.98 0.34 99.97 0.04 GCF_000260755.1 AJTA01 1830 1909 0 35 2 41 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_000260755.1 HMT-638 ATCC 700779 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 ATCC 700779 53 1857230 39.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/260/755/GCA_000260755.1_SinfantisSK959v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis PRJNA158721 889204 SAMN00761850 SinfantisSK959v1.0 Contig Celera Assembler v. 6.1 2011-12-05T15:40:04.937 not determined Illumina J. Craig Venter Institute 274.0x 99.98 98.98 0.34 99.97 0.04 GCF_000260755.1 AJTA01 1830 1909 0 35 2 41 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_000261025.1 HMT-643 17 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia 17 2 2699437 43.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/261/025/GCA_000261025.1_ASM26102v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA175 246198 SAMN02603988 ASM26102v1 Complete Genome Celera Assembler v. 1.3 2014-01-30T14:54:13.553 peridontal pocket Sanger TIGR 7.0x 96.53 99.32 0 99.88 0.06 GCF_000261025.1 2322 2395 2395 10 12 50 1 Prevotella_intermedia_homd_HMT_643 GCA_000261285.1 HMT-718 HK2019 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae HK2019 42 2101432 39.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/261/285/GCA_000261285.1_HparainfluenzaeHK2019v1.0 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AD PRJNA75175 1095746 SAMN00761859 HparainfluenzaeHK2019v1.0 Contig Newbler v. 2.6 2011-12-05T16:23:06.853 not determined Illumina J. Craig Venter Institute 27.0x 95.34 99.89 0 100 0.01 GCF_000261285.1 AJTC01 2003 2069 2069 27 4 34 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_000262225.1 HMT-690 ATCC 51357 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum ATCC 51357 45 2110802 34.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/262/225/GCA_000262225.1_ASM26222v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA75137 1095747 SAMN00761801 ASM26222v1 Contig Newbler v. 2.6 2011-12-05T14:31:05.007 not determined Illumina J. Craig Venter Institute 23.3x 99.99 100 0 100 0.26 GCF_000262225.1 AJSY01 2015 2072 2072 18 3 35 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_000262265.1 HMT-945 HK385 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus HK385 61 2030584 40.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/262/265/GCA_000262265.1_ASM26226v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus PRJNA75139 1095744 SAMN00761805 ASM26226v1 Contig Newbler v. 2.6 2011-12-05T14:39:06.167 not determined Illumina J. Craig Venter Institute 28.3x 99.99 99.43 0.08 100 0 GCF_000262265.1 AJSW01 1932 1998 1998 26 3 36 1 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_000262285.1 HMT-851 HK386 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus HK386 30 1822726 38.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/262/285/GCA_000262285.1_ASM26228v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA75145 1095742 SAMN00761814 ASM26228v1 Contig Newbler v. 2.6 2011-12-05T15:01:06.233 not determined Illumina J. Craig Venter Institute 32.9x 99.99 99.66 0 100 0 GCF_000262285.1 AJSV01 1701 1771 1771 27 3 39 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_000262545.1 HMT-556 DSM 20514 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-556 Prevotella bivia DSM 20514 3 2521238 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/262/545/GCA_000262545.1_ASM26254v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella bivia PRJNA50753 868129 SAMN02261368 ASM26254v1 Scaffold Newbler v. 2.3 2013-07-19T14:58:27.283 Missing Endometrium 454; Illumina JGI 30.0x 99.97 99.66 0 99.99 0.06 GCF_000262545.1 AJVZ01 2138 2214 2214 13 12 50 1 Prevotella_bivia_homd_HMT_556 GCA_000263215.1 HMT-753 ES15 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-753 Cronobacter sakazakii ES15 1 4268675 57.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/263/215/GCA_000263215.1_ASM26321v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter;s__Cronobacter sakazakii PRJNA81953 1138308 SAMN02603850 ASM26321v1 Complete Genome Newbler v. 2.3 2014-01-30T14:54:02.037 454 Seoul National University 97.95 99.99 0.14 100 0.06 GCF_000263215.1 3886 4093 4093 104 22 80 1 Cronobacter_sakazakii_homd_HMT_753 GCA_000263575.1 HMT-867 6420B Named Cultivated Vaginal (Abundance: High) HMT-867 Gardnerella leopoldii 6420B 14 1493594 42.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/263/575/GCA_000263575.1_ASM26357v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium leopoldii PRJNA42441 698954 SAMN02393777 ASM26357v1 Contig Newbler v. 2.0.00.20 2013-11-05T15:57:11.230 454 GS FLX Titanium Center for Genomic Sciences, Allegheny-Singer Research Institute 45.0x 87.37 100 0 99.82 0.17 GCF_000263575.1 ADEP01 1112 1174 1174 13 3 45 1 Gardnerella_leopoldii_homd_HMT_867 GCA_000263775.1 HMT-116 QN1 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis QN1 30 2430101 32.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/263/775/GCA_000263775.1_StacapQN11.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA159795 1189311 SAMN02471139 StacapQN11.0 Contig Velvet v. 2012-07-19 2013-12-19T13:34:48.127 Illumina HiSeq Zhejiang University 146.8x 99.97 99.81 0.06 99.98 0.31 GCF_000263775.1 AJTH01 2384 2500 2500 55 6 54 1 Staphylococcus_capitis_homd_HMT_116 GCA_000269605.1 HMT-195 F0424 Named Cultivated Oral (Abundance: Medium) HMT-195 Scardovia wiggsiae F0424 1 1550817 52.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/269/605/GCA_000269605.1_PB_Scar_wigg_F0424_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia wiggsiae PRJNA49881 857290 SAMN02463874 PB_Scar_wigg_F0424_V1 Contig allpaths v. 41303 2013-12-18T11:11:48.967 not determined Illumina/PacBio Broad Institute 276.0x 96.93 95.99 0.15 96.16 0.15 GCF_000269605.1 AKCI01 1244 1301 1301 7 4 45 1 Scardovia_wiggsiae_homd_HMT_195 GCA_000269665.1 HMT-734 TIGR4 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TIGR4 1 2162245 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/269/665/GCA_000269665.1_PB_Stre_pneu_Tigr4_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA76613 170187 SAMN00103527 PB_Stre_pneu_Tigr4_V1 Contig allpaths v. 41303 2011-11-13T01:02:05.620 missing missing Illumina/PacBio Broad Institute 148.0x 98.71 99.42 0.2 100 0.15 GCF_000269665.1 AKBW01 2123 2282 2282 87 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000269805.1 HMT-852 4401292 Named** Cultivated Oral (Abundance: High) HMT-852 Actinomyces massiliensis 4401292 13 3371034 67.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/269/805/GCA_000269805.1_ASM26980v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces massiliensis PRJNA127369 1167628 SAMN02469892 ASM26980v1 Scaffold Newbler v. 2.5.3 2013-12-19T13:09:40.850 France: Marseille patient blood culture 454 URMITE 40.0x 99.96 2.19 99.98 0.58 GCF_000269805.1 AKIO01 2801 2878 2878 21 3 52 1 Actinomyces_massiliensis_homd_HMT_852 GCA_000269845.1 HMT-586 IPLA 20019 Named Cultivated Oral (Abundance: Scarce) HMT-586 Parascardovia denticolens IPLA 20019 38 2003311 58.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/269/845/GCA_000269845.1_ASM26984v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia denticolens PRJNA167218 1193128 SAMN02470079 ASM26984v1 Contig Velvet v. 1.2.05 2013-12-19T13:09:55.897 Spain human breast milk Illumina HiSeq2000 IPLA-CSIC 200.0x 98.67 99.77 0.16 99.9 0.2 GCF_000269845.1 AKII01 1649 1722 1722 5 2 64 2 Parascardovia_denticolens_homd_HMT_586 GCA_000270225.1 HMT-619 TDC60 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis TDC60 1 2339898 48.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/270/225/GCA_000270225.1_ASM27022v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJDA66755 1030843 SAMD00060990 ASM27022v1 Complete Genome Newbler v. 2.5.1; Phrap v. 1.090518; Consed v. 19.0 2016-09-28T01:01:24.023 Sanger; Roche 454 Tokyo Medical and Dental University 17.0x 98.39 99.92 0.31 99.99 0.1 GCF_000270225.1 1960 2042 2042 16 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000270465.1 HMT-128 N920143 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis N920143 1 2595888 33.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/270/465/GCA_000270465.1_ASM27046v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJEA67127 1034809 SAMEA2272235 ASM27046v1 Complete Genome 2013-12-20T12:43:12.030 Wellcome Trust Sanger Insititute 99.56 99.61 0 100 0.08 GCF_000270465.1 2420 2580 2580 87 16 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_000271865.1 HMT-686 GS-5 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans GS-5 1 2027088 36.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/271/865/GCA_000271865.1_ASM27186v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA168469 1198676 SAMN02603489 ASM27186v1 Complete Genome 2014-01-30T14:21:33.153 KUMC 99.34 100 0.19 100 0.2 GCF_000271865.1 1894 2023 2023 48 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_000271925.1 HMT-700 F0487 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea F0487 62 2590781 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/271/925/GCA_000271925.1_Coraltaxon412F0487v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA78903 1125721 SAMN00792225 Coraltaxon412F0487v1.0 Contig Celera Assembler v. 6.1 2012-02-23T16:16:16.233 not determined Illumina J. Craig Venter Institute 31.2x 100 0 99.99 0.09 GCF_000271925.1 AJZR01 2170 2239 2239 8 13 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_000271945.1 HMT-619 W50 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis W50 104 2242062 48.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/271/945/GCA_000271945.1_PgingivalisW50v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA78905 1125722 SAMN00792205 PgingivalisW50v1.0 Contig Celera Assembler v. 6.1.A 2012-02-23T16:16:08.203 not determined Illumina J. Craig Venter Institute 30.5x 98.61 99.92 0 99.99 0.02 GCF_000271945.1 AJZS01 1892 1966 1966 22 3 48 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000273445.1 HMT-734 TIGR4 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TIGR4 1 2163340 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/273/445/GCA_000273445.1_Stre_pneu_Tigr4_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA76613 170187 SAMN02597080 Stre_pneu_Tigr4_V1 Complete Genome manual processing 2014-01-27T11:06:24.043 missing missing Sanger; Illumina Broad Institute 98.72 99.42 0.2 100 0.15 GCF_000273445.1 AKVY01 2123 2282 2282 87 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000273605.1 HMT-420 F0419 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis F0419 5 2438048 26.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/273/605/GCA_000273605.1_PB_Fuso_nucl_ss_animalis_F0419_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA64879 999414 SAMN02596922 PB_Fuso_nucl_ss_animalis_F0419 Contig allpaths v. 41303 2014-01-27T09:48:58.570 Illumina/PacBio Broad Institute 175.0x 96.76 100 0 100 0.49 GCF_000273605.1 AKCE01 2297 2377 2377 18 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_000273625.1 HMT-420 7_1 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis 7_1 4 2515488 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/273/625/GCA_000273625.1_PB_Fuso_sp_7_1_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA32483 457405 SAMN02463711 PB_Fuso_sp_7_1_V1 Contig allpaths v. 41303 2013-12-18T11:11:29.570 not determined Illumina/PacBio Broad Institute 110.0x 96.78 100 0 100 0.56 GCF_000273625.1 AKBT01 2419 2501 2501 19 16 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_000275805.1 HMT-195 F0424 Named Cultivated Oral (Abundance: Medium) HMT-195 Scardovia wiggsiae F0424 2 1555498 53.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/275/805/GCA_000275805.1_Scar_wigg_F0424_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia wiggsiae PRJNA49881 857290 SAMN02463874 Scar_wigg_F0424_V1 Scaffold allpaths v. R37654 2013-12-18T11:11:48.967 not determined Illumina Broad Institute 200.0x 96.93 95.99 0.15 96.36 0.15 GCF_000275805.1 AGZS01 1243 1303 1303 7 6 46 1 Scardovia_wiggsiae_homd_HMT_195 GCA_000277405.1 HMT-812 Shi112 Named Cultivated Gastrointestinal Tract (Abundance: Low) HMT-812 Helicobacter pylori Shi112 1 1663456 38.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/277/405/GCA_000277405.1_ASM27740v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori_C PRJNA94347 1163740 SAMN02603194 ASM27740v1 Complete Genome 2014-01-30T11:19:39.890 Peru: Amazonian viillage of Sh gastric antrum of Amerindian resident Dept. Molec. Microbiology, Washington University Medical School in Saint Louis 95.84 99.62 0 99.99 0.06 GCF_000277405.1 1558 1613 1613 13 4 37 1 Helicobacter_pylori_homd_HMT_812 GCA_000277505.1 HMT-934 ACB8 Named Cultivated Oral (Abundance: Medium) HMT-934 Oribacterium parvum ACB8 15 2481911 42.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/277/505/GCA_000277505.1_OspACB8v1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium parvum PRJNA78569 796945 SAMN00828777 OspACB8v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:49:02.277 not determined Illumina J. Craig Venter Institute 31.3x 99.61 99.36 0 100 0.15 GCF_000277505.1 AJZT01 2130 2195 2195 22 3 39 1 Oribacterium_parvum_homd_HMT_934 GCA_000277585.1 HMT-700 Holt 25 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea Holt 25 42 2653757 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/277/585/GCA_000277585.1_CochraceaHolt25v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA78899 1125719 SAMN00792203 CochraceaHolt25v1.0 Contig Celera v. 6.1.A 2012-02-23T16:16:05.777 not determined Illumina J. Craig Venter Institute 31.0x 96.24 100 0 99.98 0.05 GCF_000277585.1 AKFV01 2195 2261 2261 10 12 43 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_000277665.1 HMT-700 F0486 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea F0486 38 2545989 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/277/665/GCA_000277665.1_Coraltaxon335F0486v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA78901 1125720 SAMN00792204 Coraltaxon335F0486v1.0 Contig Celera v. 6.1.A 2012-02-23T16:16:06.807 not determined Illumina J. Craig Venter Institute 30.7x 100 0 99.99 0.04 GCF_000277665.1 AKFR01 2107 2169 2169 9 9 43 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_000277715.1 HMT-739 F0230a Named Cultivated Oral (Abundance: Medium) HMT-739 Arachnia propionica F0230a 1 3449360 66.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/277/715/GCA_000277715.1_ASM27771v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia propionica PRJNA49291 767029 SAMN02415616 ASM27771v1 Complete Genome Celera Assembler v. 6.1 2013-11-20T14:49:18.330 not determined 454; Illumina J. Craig Venter Institute 31.0x 99 97.47 1.22 100 0.14 GCF_000277715.1 3048 3128 3128 21 6 52 1 Arachnia_propionica_homd_HMT_739 GCA_000277735.2 HMT-822 H37Rv Named Cultivated Pathogen (Abundance: Scarce) HMT-822 Mycobacterium tuberculosis H37Rv 1 4411709 65.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/277/735/GCA_000277735.2_ASM27773v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium tuberculosis PRJNA37301 83332 SAMN03081436 ASM27773v2 Complete Genome Newbler v. 2.1-PreRelease-4/28/2009 2014-09-26T10:50:52.703 454/Sanger/Illumina The Broad Institute 99.99 99.94 0 100 0.75 GCF_000277735.2 4062 4119 0 0 3 53 1 Mycobacterium_tuberculosis_homd_HMT_822 GCA_000278725.1 HMT-240 ICM47 Unnamed Cultivated Oral (Abundance: High) HMT-240 Schaalia sp. HMT-240 ICM47 143 2444105 64.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/278/725/GCA_000278725.1_AspICM47v1.0 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000278725 PRJNA78551 936548 SAMN00828776 AspICM47v1.0 Contig Celera Assembler v. 6.1.A 2012-03-15T11:36:01.657 not determined Illumina J. Craig Venter Institute 30.0x 100 0.95 99.99 1.07 GCF_000278725.1 ALCA01 2022 2082 2082 8 1 49 2 Schaalia_sp_HMT_240_homd_HMT_240 GCA_000279145.1 HMT-983 P3M-2 Named Cultivated Taxonomic Reference (Abundance: Scarce) HMT-983 Melioribacter roseus P3M-2 1 3300414 41.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/279/145/GCA_000279145.1_ASM27914v1 d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__Ignavibacteriales;f__Melioribacteraceae;g__Melioribacter;s__Melioribacter roseus PRJNA165865 1191523 SAMN02603097 ASM27914v1 Complete Genome 2014-01-30T11:19:31.860 Russia: Tomsk region microbial mat, developing on the wooden surface of a chute, under the flow of ho Centre Bioengineering RAS 99.98 1.12 99.94 0.27 GCF_000279145.1 2901 2956 2956 6 3 45 1 GCA_000279495.1 HMT-734 GA04672 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA04672 9 2135761 39.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/279/495/GCA_000279495.1_ASM27949v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA70987 1069627 SAMN00773079 ASM27949v1 Contig Celera assembler v. 6.1 2012-01-13T09:20:03.847 454 GS FLX Titanium Institute for Genome Sciences 28.0x 98.65 99.82 0.2 100 0.32 GCF_000279495.1 ALCJ01 2104 2265 2265 80 20 60 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000279535.1 HMT-638 SPAR10 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 SPAR10 10 1758646 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/279/535/GCA_000279535.1_ASM27953v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_I PRJNA89127 1159208 SAMN00811524 ASM27953v1 Contig Celera assembler v. 6.1 2012-03-13T14:09:03.160 454 GS FLX Titanium Institute for Genome Sciences 46.0x 94.61 99.89 0 99.99 0.11 GCF_000279535.1 ALCH01 1666 1779 0 38 13 61 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_000279535.1 HMT-638 SPAR10 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 SPAR10 10 1758646 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/279/535/GCA_000279535.1_ASM27953v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_I PRJNA89127 1159208 SAMN00811524 ASM27953v1 Contig Celera assembler v. 6.1 2012-03-13T14:09:03.160 454 GS FLX Titanium Institute for Genome Sciences 46.0x 94.61 99.89 0 99.99 0.11 GCF_000279535.1 ALCH01 1666 1779 0 38 13 61 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_000279715.1 HMT-734 GA54354 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA54354 8 2100907 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/279/715/GCA_000279715.1_ASM27971v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA75269 1105115 SAMN00773651 ASM27971v1 Contig Celera assembler v. 6.1 2012-01-17T09:24:03.747 454 GS FLX Titanium Institute for Genome Sciences 35.0x 98.71 99.76 0.25 100 0.27 GCF_000279715.1 ALCN01 2079 2232 2232 78 15 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000279835.1 HMT-734 GA19998 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA19998 7 2137965 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/279/835/GCA_000279835.1_ASM27983v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48763 760802 SAMN00792350 ASM27983v1 Contig Celera assembler v. 6.1 2012-02-24T15:45:04.213 454 GS FLX Titanium Institute for Genome Sciences 33.0x 98.58 99.6 0.63 100 2.75 GCF_000279835.1 ALCS01 2126 2289 2289 83 17 62 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000279855.1 HMT-734 GA17484 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae GA17484 6 2037743 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/279/855/GCA_000279855.1_ASM27985v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA48733 760788 SAMN00792354 ASM27985v1 Contig Celera assembler v. 6.1 2012-02-24T15:58:04.830 454 GS FLX Titanium Institute for Genome Sciences 38.0x 98.57 99.42 0.2 100 0.06 GCF_000279855.1 ALCT01 1983 2129 2129 68 16 61 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000279975.1 HMT-200 ATCC 51190 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii ATCC 51190 198 1837113 27.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/279/975/GCA_000279975.1_ASM27997v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA167963 1196653 SAMN02469584 ASM27997v1 Contig Newbler v. 2.5.3 2013-12-19T13:01:17.383 sinusitis in upper jaw 454 Chosun University 30.0x 97.66 98.72 0 96.34 0.13 GCF_000279975.1 AKXI01 1718 1789 1789 16 9 45 1 Fusobacterium_vincentii_homd_HMT_200 GCA_000281175.1 HMT-994 DSM 14535 Named Cultivated Taxonomic Reference (Abundance: Scarce) HMT-994 Caldilinea aerophila DSM 14535 1 5144873 58.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/281/175/GCA_000281175.1_ASM28117v1 d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea;s__Caldilinea aerophila PRJDB47 926550 SAMD00061033 ASM28117v1 Complete Genome phrap v. 0.020425.c 2016-09-28T01:01:54.070 Sanger ABI 3730 National Institute of Technology and Evaluation 9.0x 100 1.82 100 0.38 GCF_000281175.1 4129 4202 4202 18 6 48 1 GCA_000281755.1 HMT-731 DSM 30104 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-731 Klebsiella pneumoniae DSM 30104 27 5512347 57.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/281/755/GCA_000281755.1_KlePneDSM30104 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella pneumoniae PRJNA89609 1162296 SAMN02470063 KlePneDSM30104 Contig Newbler v. 2.3 2013-12-19T13:09:54.823 blood 454; Illumina GAIIx International Vaccine Institute 950.0x 99.99 100 0.97 100 0.61 GCF_000281755.1 AJJI01 5111 5339 5339 134 17 76 1 Klebsiella_pneumoniae_homd_HMT_731 GCA_000282935.1 HMT-701 ICM39 Named Cultivated Oral (Abundance: High) HMT-701 Schaalia odontolytica ICM39 146 2267656 65.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/282/935/GCA_000282935.1_AspICM39v1.0 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia odontolytica_B PRJNA78553 1105029 SAMN00828786 AspICM39v1.0 Contig Newbler v. 2.6 2012-03-15T11:49:08.037 not determined Illumina J. Craig Venter Institute 31.0x 99.53 0.47 99.98 0.15 GCF_000282935.1 ALCB01 1885 1944 1944 8 2 48 1 Schaalia_odontolytica_homd_HMT_701 GCA_000283035.1 HMT-172 ICM58 Unnamed Cultivated Oral (Abundance: High) HMT-172 Schaalia sp. HMT-172 ICM58 239 2390495 66.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/283/035/GCA_000283035.1_AspICM58v1.0 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000466265 PRJNA78555 1105030 SAMN00828781 AspICM58v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:49:05.170 not determined Illumina J. Craig Venter Institute 31.0x 99.05 1.11 99.91 0.1 GCF_000283035.1 ALIY01 1989 2053 2053 9 6 48 1 Schaalia_sp_HMT_172_homd_HMT_172 GCA_000283375.1 HMT-646 11220434 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae 11220434 65 2016589 48.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/283/375/GCA_000283375.1_ASM28337v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA88539 1188007 SAMN02472055 ASM28337v1 Scaffold Newbler v. 2.5.3 2013-12-19T13:52:20.176 knee synovial fluid 454 Université Aix-Marseille 59.0x 98.44 98.87 0 100 0.06 GCF_000283375.1 ALIJ01 1963 2031 2031 14 4 49 1 Kingella_kingae_homd_HMT_646 GCA_000284535.1 HMT-550 HO 5096 0412 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus HO 5096 0412 1 2832299 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/284/535/GCA_000284535.1_ASM28453v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJEA71279 1074252 SAMEA2272552 ASM28453v1 Complete Genome 2013-12-20T12:43:38.210 Wellcome Trust Sanger Insititute 98.18 99.51 0.22 100 0.24 GCF_000284535.1 2620 2813 2813 112 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000284575.1 HMT-686 LJ23 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans LJ23 1 2015626 37.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/284/575/GCA_000284575.1_ASM28457v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJDB67 1155071 SAMD00061051 ASM28457v1 Complete Genome Newbler v. 2.5.1; Phrap v. 1.090518; Consed v. 19.0 2016-09-28T01:02:07.990 Sanger; Roche 454 Tokyo Medical and Dental University Graduate School of Medical and Dental Sciences 88.0x 99.09 100 0.82 100 0.35 GCF_000284575.1 1870 1985 1985 34 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_000285995.1 HMT-176 Howell 279 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii Howell 279 243 3114341 67.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/285/995/GCA_000285995.1_AneasH279v1.0 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA78549 1115803 SAMN00828754 AneasH279v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:25:03.140 not determined Illumina J. Craig Venter Institute 11.0x 99.97 99.23 1 91.05 1.23 GCF_000285995.1 ALJK01 2727 2801 2801 16 8 49 1 Actinomyces_naeslundii_homd_HMT_176 GCA_000286355.1 HMT-189 C3-8 Named NVP Uncultivated Environmental -Food (Abundance: Scarce) HMT-189 Kocuria atrinae C3-8 221 3197170 63.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/286/355/GCA_000286355.1_KocAtr1.0 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria atrinae_A PRJNA162451 1179225 SAMN02470141 KocAtr1.0 Contig CLC NGS Cell v. 1.0 2013-12-19T13:09:59.733 South Korea Korean traditional fermented seafood (jeotgal) IonTorrent Korea Food Research Institute 80.0x 89.28 86.46 0.22 79.03 4.52 GCF_000286355.1 AJXN01 3964 4036 4036 20 3 48 1 GCA_000286475.1 HMT-071 BS35b Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus BS35b 17 1858462 41.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/286/475/GCA_000286475.1_SspBS35bv1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA78577 1105032 SAMN00828789 SspBS35bv1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:51:01.620 not determined Illumina J. Craig Venter Institute 32.0x 99.87 0.2 99.99 0.05 GCF_000286475.1 ALKH01 1755 1838 1838 40 1 41 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000286475.1 HMT-071 BS35b Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus BS35b 17 1858462 41.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/286/475/GCA_000286475.1_SspBS35bv1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA78577 1105032 SAMN00828789 SspBS35bv1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:51:01.620 not determined Illumina J. Craig Venter Institute 32.0x 99.87 0.2 99.99 0.05 GCF_000286475.1 ALKH01 1755 1838 1838 40 1 41 1 Streptococcus_oralis_HMT_071_398_707 GCA_000286495.1 HMT-758 AS14 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis AS14 19 2331493 43.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/286/495/GCA_000286495.1_SspAS14v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_P PRJNA78579 936577 SAMN00828791 SspAS14v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:52:02.227 not determined Illumina J. Craig Venter Institute 31.0x 100 0.19 100 0.27 GCF_000286495.1 ALKI01 2234 2304 2304 28 2 39 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000286595.1 HMT-010 WC-A-157 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-010 Acinetobacter radioresistens WC-A-157 21 3209605 41.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/286/595/GCA_000286595.1_gacin12v1.0 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens PRJNA53399 903900 SAMN02436573 gacin12v1.0 Contig Celera Assembler v. 6.1 2013-12-04T14:28:32.086 Iraq: Camp Delta 454; Illumina Walter Reed Army Institute of Research 64.5x 98.44 100 0 100 0.18 GCF_000286595.1 ALIR01 2988 3106 3106 16 23 78 1 Acinetobacter_radioresistens_homd_HMT_010 GCA_000286635.1 HMT-524 ACP1 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica ACP1 26 2042594 38.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/286/635/GCA_000286635.1_VspACP1v1.0 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA78581 936588 SAMN00828793 VspACP1v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:53:01.770 not determined Illumina J. Craig Venter Institute 35.0x 100 0 99.99 0.09 GCF_000286635.1 ALKL01 1879 1952 1952 20 4 48 1 Veillonella_atypica_homd_HMT_524 GCA_000287615.1 HMT-944 HK 2154 Named Cultivated Oral (Abundance: Medium) HMT-944 Haemophilus sputorum HK 2154 25 2080113 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/287/615/GCA_000287615.1_HsputHK2154v1.0 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A sputorum PRJNA89619 1078483 SAMN00829138 HsputHK2154v1.0 Contig Celera Assembler v. 6.1 2012-03-20T15:53:02.147 not determined Illumina JCVI 29.0x 99.07 99.81 0 100 0.11 GCF_000287615.1 ALJP01 1957 2047 2047 36 14 39 1 Haemophilus_sputorum_homd_HMT_944 GCA_000287635.1 HMT-560 MSX73 Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae MSX73 47 3164912 51.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/287/635/GCA_000287635.1_PspMSX73v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJNA78571 1032506 SAMN00828778 PspMSX73v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:49:03.020 not determined Illumina J. Craig Venter Institute 32.0x 99.31 0 99.97 0.01 GCF_000287635.1 ALJQ01 2554 2613 2613 8 3 47 1 Segatella_buccae_homd_HMT_560 GCA_000287655.1 HMT-124 FOBRC9 Named Cultivated Oral (Abundance: Low) HMT-124 Selenomonas artemidis FOBRC9 49 2336249 57.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/287/655/GCA_000287655.1_SspFOBRC9v1.0 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda artemidis PRJNA78573 936573 SAMN00828779 SspFOBRC9v1.0 Contig Celera Assembler v. 6.1.A 2012-03-15T11:49:03.920 not determined Illumina J. Craig Venter Institute 31.0x 99.65 0.05 99.83 0.1 GCF_000287655.1 ALJR01 2190 2264 2264 18 4 51 1 Selenomonas_artemidis_homd_HMT_124 GCA_000287675.1 HMT-430 ICM7 Unnamed Cultivated Oral (Abundance: Medium) HMT-430 Lachnoanaerobaculum sp. HMT-430 ICM7 38 2779958 35.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/287/675/GCA_000287675.1_LspICM7v1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum sp000287675 PRJNA78559 936594 SAMN00828783 LspICM7v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:49:06.460 not determined Illumina J. Craig Venter Institute 31.0x 99.37 0 98.63 0 GCF_000287675.1 ALJL01 2567 2631 2631 16 1 46 1 Lachnoanaerobaculum_sp_HMT_430_homd_HMT_430 GCA_000287695.1 HMT-796 AS15 Named Cultivated Oral (Abundance: No Data) HMT-841 Megasphaera lornae AS15 52 2654638 32.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/287/695/GCA_000287695.1_EspAS15v1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter;s__Peptoanaerobacter margaretiae PRJNA78563 936556 SAMN00828784 EspAS15v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:49:07.080 not determined Illumina J. Craig Venter Institute 31.0x 99.3 0.7 99.58 0.12 GCF_000287695.1 ALJM01 2234 2282 2282 24 2 21 1 Peptoanaerobacter_margaretiae_homd_HMT_796 GCA_000287715.1 HMT-071 SK304 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SK304 25 2020585 40.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/287/715/GCA_000287715.1_SoralisSK304v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_Y PRJNA89615 1161421 SAMN00829137 SoralisSK304v1.0 Contig Celera Assembler v. 6.1 2012-03-20T15:51:05.690 not determined Illumina JCVI 33.0x 92.78 99.77 0.6 99.99 0.4 GCF_000287715.1 ALJN01 1972 2077 2077 72 1 31 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000287715.1 HMT-071 SK304 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SK304 25 2020585 40.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/287/715/GCA_000287715.1_SoralisSK304v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_Y PRJNA89615 1161421 SAMN00829137 SoralisSK304v1.0 Contig Celera Assembler v. 6.1 2012-03-20T15:51:05.690 not determined Illumina JCVI 33.0x 92.78 99.77 0.6 99.99 0.4 GCF_000287715.1 ALJN01 1972 2077 2077 72 1 31 1 Streptococcus_oralis_HMT_071_398_707 GCA_000287855.1 HMT-580 FOBRC14 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus FOBRC14 19 2142354 44.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/287/855/GCA_000287855.1_CspFOBRC14v1.0 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA78557 936554 SAMN00828782 CspFOBRC14v1.0 Contig Celera Assembler v. 6.1.A 2012-03-15T11:49:05.847 not determined Illumina J. Craig Venter Institute 32.0x 99.88 0 99.97 0.73 GCF_000287855.1 ALJJ01 2207 2251 2251 4 1 38 1 Campylobacter_curvus_homd_HMT_580 GCA_000292225.1 HMT-245 B5 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-245 Roseomonas mucosa B5 228 4719255 70.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/292/225/GCA_000292225.1_ASM29222v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas mucosa PRJNA171724 1217720 SAMN02471852 ASM29222v1 Contig CLC Genomics Workbench v. 5.1 2013-12-19T13:43:38.787 Malaysia soil Illumina MiSeq University of Malaya 98.0x 99.75 0.5 100 0.11 GCF_000292225.1 ALOX01 4241 4327 4327 22 3 60 1 Roseomonas_mucosa_homd_HMT_245 GCA_000292405.1 HMT-616 M2321 Named Cultivated Pathogen (Abundance: Scarce) HMT-616 Mycoplasmoides genitalium M2321 1 579977 31.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/292/405/GCA_000292405.1_ASM29240v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides genitalium PRJNA39739 663918 SAMN02603571 ASM29240v1 Complete Genome 2014-01-30T14:21:39.790 Louisiana State University Health Sciences Center 99.73 98.75 0 93.21 0.09 GCF_000292405.1 994 1036 1036 2 3 36 1 Mycoplasmoides_genitalium_homd_HMT_616 GCA_000292445.1 HMT-616 M6282 Named Cultivated Pathogen (Abundance: Scarce) HMT-616 Mycoplasmoides genitalium M6282 1 579504 31.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/292/445/GCA_000292445.1_ASM29244v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides genitalium PRJNA39705 662946 SAMN02603573 ASM29244v1 Complete Genome 2014-01-30T14:21:39.900 LSU Health Sciences Center 99.48 97.99 0 93.49 0.23 GCF_000292445.1 1007 1049 1049 2 3 36 1 Mycoplasmoides_genitalium_homd_HMT_616 GCA_000292485.1 HMT-616 M6320 Named Cultivated Pathogen (Abundance: Scarce) HMT-616 Mycoplasmoides genitalium M6320 1 579796 31.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/292/485/GCA_000292485.1_ASM29248v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides genitalium PRJNA39703 662945 SAMN02603572 ASM29248v1 Complete Genome 2014-01-30T14:21:39.846 LSU Health Sciences Center 99.72 99 0 96.53 0.07 GCF_000292485.1 997 1039 1039 2 3 36 1 Mycoplasmoides_genitalium_homd_HMT_616 GCA_000292505.1 HMT-616 M2288 Named Cultivated Pathogen (Abundance: Scarce) HMT-616 Mycoplasmoides genitalium M2288 1 579558 31.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/292/505/GCA_000292505.1_ASM29250v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides genitalium PRJNA39707 662947 SAMN02603574 ASM29250v1 Complete Genome 2014-01-30T14:21:39.950 LSU Health Sciences Center 99.48 98.5 0 97.7 0.08 GCF_000292505.1 1004 1046 1046 2 3 36 1 Mycoplasmoides_genitalium_homd_HMT_616 GCA_000292915.1 HMT-571 GG4 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-571 Burkholderia cepacia GG4 2 6467321 66.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/292/915/GCA_000292915.1_ASM29291v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia cepacia_D PRJNA66091 1009846 SAMN02604072 ASM29291v1 Complete Genome 2014-01-30T14:54:20.230 Malaysia soil U Malaya 91.04 99.9 0.6 100 0.06 GCF_000292915.1 5840 5960 5960 52 8 59 1 Burkholderia_cepacia_homd_HMT_571 GCA_000292935.1 HMT-953 ChDC F128 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii ChDC F128 30 2361684 26.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/292/935/GCA_000292935.1_ASM29293v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA171181 1216362 SAMN02469578 ASM29293v1 Contig Newbler v. 2.5.3 2013-12-19T13:01:17.046 South Korea upper jaw tissue with sinusitis 454 GS-FLX Chosun University 30.0x 99.93 100 0 99.99 0.07 GCF_000292935.1 ALVD01 2210 2278 2278 21 3 43 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_000292975.1 HMT-690 Fnf 1007 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum Fnf 1007 87 2166823 35.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/292/975/GCA_000292975.1_FnecroFnf1007v1.0 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA89621 1161424 SAMN00829140 FnecroFnf1007v1.0 Contig Newbler v. 2.6 2012-03-20T15:55:02.463 not determined Illumina JCVI 30.0x 98.63 100 0 100 0.16 GCF_000292975.1 ALKK01 2090 2146 2146 20 3 32 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_000292995.1 HMT-279 F0450 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri F0450 51 2265201 55.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/292/995/GCA_000292995.1_Psp279F0450v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA78907 1125723 SAMN00792234 Psp279F0450v1.0 Contig Celera Assembler v. 6.1.A 2012-02-23T16:16:39.263 not determined Illumina J. Craig Venter Institute 31.0x 98.87 0 99.92 0.05 GCF_000292995.1 ALKJ01 1747 1811 1811 7 7 49 1 Porphyromonas_pasteri_homd_HMT_279 GCA_000293015.1 HMT-602 CM382 Named Cultivated Oral (Abundance: Scarce) HMT-602 Slackia exigua CM382 25 2051910 61.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/293/015/GCA_000293015.1_SspCM382v1.0 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia;s__Slackia exigua PRJNA78589 1111137 SAMN00828797 SspCM382v1.0 Contig Newbler v. 2.6 2012-03-15T11:57:01.640 not determined Illumina J. Craig Venter Institute 33.0x 100 0 97.88 1.75 GCF_000293015.1 ALNO01 1691 1752 1752 9 3 48 1 Slackia_exigua_homd_HMT_602 GCA_000293035.1 HMT-081 OBRC8 Unnamed Cultivated Oral (Abundance: Low) HMT-081 Peptoanaerobacter sp. HMT-081 OBRC8 40 2553276 30.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/293/035/GCA_000293035.1_EbactAS15v1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter;s__Peptoanaerobacter stomatis_A PRJNA78565 796937 SAMN00828788 EbactAS15v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:49:09.453 not determined Illumina J. Craig Venter Institute 32.0x 94.85 99.3 0 98.5 0.17 GCF_000293035.1 ALNK01 2216 2271 2271 23 4 27 1 Peptoanaerobacter_stomatis_homd_HMT_081 GCA_000293155.1 HMT-042 CM50 Named Cultivated Oral (Abundance: Medium) HMT-042 Mogibacterium timidum CM50 44 1888523 44.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/293/155/GCA_000293155.1_MspCM50v1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium timidum PRJNA78583 936375 SAMN00828794 MspCM50v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:54:01.480 not determined Illumina J. Craig Venter Institute 31.0x 98.58 0 97.32 0.54 GCF_000293155.1 ALNL01 1709 1776 1776 21 4 41 1 Mogibacterium_timidum_homd_HMT_042 GCA_000293175.1 HMT-325 CM59 Named Cultivated Oral (Abundance: Medium) HMT-325 Capnocytophaga granulosa CM59 75 2785060 41.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/293/175/GCA_000293175.1_CspCM59v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga granulosa PRJNA78587 936370 SAMN00828795 CspCM59v1.0 Contig Celera Assembler v. 6.1 2012-03-15T11:55:01.800 not determined Illumina J. Craig Venter Institute 32.0x 100 0.5 99.94 0.08 GCF_000293175.1 ALNN01 2585 2640 2640 9 4 41 1 Capnocytophaga_granulosa_homd_HMT_325 GCA_000295095.1 HMT-179 7400942 Named Cultivated Oral (Abundance: Low) HMT-179 Actinomyces timonensis 7400942 4 2932944 71.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/295/095/GCA_000295095.1_ASM29509v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces timonensis PRJNA164799 521393 SAMN02472053 ASM29509v1 Scaffold Newbler v. 2.5.3 2013-12-19T13:52:20.050 France: Marseille human clinical osteo-articular sample 454 URMITE 38.4x 99.76 0.95 99.95 0.15 GCF_000295095.1 AKGF01 2474 2548 2548 13 3 57 1 GCA_000296275.1 HMT-852 F0489 Named** Cultivated Oral (Abundance: High) HMT-852 Actinomyces massiliensis F0489 233 3416440 67.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/296/275/GCA_000296275.1_AmassiliensisF0489v1.0 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces massiliensis PRJNA78897 1125718 SAMN00792233 AmassiliensisF0489v1.0 Contig Newbler v. 2.6 2012-02-23T16:16:38.210 not determined Illumina J. Craig Venter Institute 31.8x 98.2 99.96 2.01 99.95 0.4 GCF_000296275.1 AKFT01 2926 3002 3002 18 4 53 1 Actinomyces_massiliensis_homd_HMT_852 GCA_000296385.1 HMT-083 OBRC5-5 Unnamed Cultivated Oral (Abundance: Medium) HMT-083 Lachnoanaerobaculum sp. HMT-083 OBRC5-5 7 2932121 37.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/296/385/GCA_000296385.1_Clos_bact_OBRC5-5_V1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum sp000296385 PRJNA78963 936595 SAMN02463955 Clos_bact_OBRC5-5_V1 Scaffold allpaths v. R40214 2013-12-18T11:11:59.480 not determined Illumina Broad Institute 141.0x 99.37 0 98.12 0.11 GCF_000296385.1 ALOA01 2658 2731 2731 16 8 48 1 Lachnoanaerobaculum_sp_HMT_083_homd_HMT_083 GCA_000296405.1 HMT-832 ATCC 51513 Named Cultivated Skin/Ear (Abundance: Medium) HMT-832 Corynebacterium otitidis ATCC 51513 6 2118285 71.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/296/405/GCA_000296405.1_Turi_otit_ATCC_51513_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium otitidis PRJNA52203 883169 SAMN02463914 Turi_otit_ATCC_51513_V1 Scaffold allpaths v. R39980 2013-12-18T11:11:55.093 not determined Illumina Broad Institute 214.0x 99.93 96.23 0 99.99 0.15 GCF_000296405.1 AHAE01 1795 1866 1866 8 4 58 1 Corynebacterium_otitidis_homd_HMT_832 GCA_000296595.1 HMT-550 08BA02176 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 08BA02176 1 2782313 32.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/296/595/GCA_000296595.1_ASM29659v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA174226 1229492 SAMN02603722 ASM29659v1 Complete Genome Newbler v. 1.1.03.24 2014-01-30T14:21:48.553 Canada soft tissue infection of skin 454 Public Health Agency of Canada 97.78 99.51 0.08 100 0.15 GCF_000296595.1 2532 2716 2716 107 18 58 1 Staphylococcus_aureus_homd_HMT_550 GCA_000297075.2 HMT-740 CECT5344 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-740 Pseudomonas oleovorans CECT5344 1 4686340 62.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/297/075/GCA_000297075.2_Ppseudo_final d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E oleovorans PRJEB27 1182590 SAMEA4532340 Ppseudo_final Complete Genome 2016-11-03T09:06:38.003 CeBiTec, Bielefeld University 40.0x 97.11 99.39 1.63 100 0.35 GCF_000297075.2 4428 4732 4732 223 12 68 1 Pseudomonas_oleovorans_homd_HMT_740 GCA_000297795.2 HMT-832 ATCC 51513 Named Cultivated Skin/Ear (Abundance: Medium) HMT-832 Corynebacterium otitidis ATCC 51513 32 2154859 72.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/297/795/GCA_000297795.2_ASM29779v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium otitidis PRJEB96 883169 SAMEA2272804 ASM29779v2 Scaffold 2013-12-20T12:44:03.446 Center for Biotechnology 99.93 94.83 0 99.94 0.13 GCF_000297795.2 CAJZ01 1842 1912 1912 8 2 59 1 Corynebacterium_otitidis_homd_HMT_832 GCA_000298115.2 HMT-881 CD034 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-881 Lentilactobacillus buchneri CD034 4 2563168 44.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/298/115/GCA_000298115.2_ASM29811v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri PRJNA71051 1071400 SAMN02603054 ASM29811v2 Complete Genome 2014-01-30T11:19:28.730 Austria stable grass silage CeBiTec 99.84 99.06 0 100 0.57 GCF_000298115.2 2424 2546 2546 45 15 61 1 Lentilactobacillus_buchneri_homd_HMT_881 GCA_000299015.1 HMT-734 gamPNI0373 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae gamPNI0373 1 2064154 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/299/015/GCA_000299015.1_ASM29901v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA42247 697283 SAMN02299431 ASM29901v1 Complete Genome 2013-08-02T12:07:39.970 not determined WashU 99.48 99.56 0.21 100 0.4 GCF_000299015.1 2055 2199 2199 74 12 57 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000302495.1 HMT-833 RH4 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis RH4 9 1836691 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/302/495/GCA_000302495.1_RH4.0 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA175869 749219 SAMN02470825 RH4.0 Contig ay Assembler v. 2.0.0 2013-12-19T13:25:16.210 Denmark blood Illumina HiSeq; Sanger Radboud University Medical Center 200.0x 99.28 99.45 0.27 100 0 GCF_000302495.1 AMSO01 1658 1714 1714 9 4 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_000302515.1 HMT-530 C1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes C1 1 2519002 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/302/515/GCA_000302515.1_ASM30251v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA175596 1234380 SAMN02604070 ASM30251v1 Complete Genome 2014-01-30T14:54:20.110 Tokyo Medical and Dental University 99.8 100 0 99.99 0.52 GCF_000302515.1 2356 2436 2436 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_000305335.2 HMT-755 57.I Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 57.I 2 2138805 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/305/335/GCA_000305335.2_ASM30533v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA68129 1046629 SAMN02603111 ASM30533v2 Complete Genome 2014-01-30T11:19:32.897 Chang Gung University 95.86 99.94 0.15 99.97 0 GCF_000305335.2 2002 2130 2130 41 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_000306805.1 HMT-644 JTH08 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius JTH08 1 1933610 37.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/306/805/GCA_000306805.1_ASM30680v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJDA33443 591365 SAMD00060960 ASM30680v1 Complete Genome 2016-09-28T01:00:57.858 Juntendo University School of Medicine 99.99 100 0 100 0.21 GCF_000306805.1 1840 1953 1953 32 12 68 1 Streptococcus_intermedius_homd_HMT_644 GCA_000306945.1 HMT-828 18323 Named Cultivated Pathogen (Abundance: Scarce) HMT-828 Bordetella pertussis 18323 1 4043846 67.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/306/945/GCA_000306945.1_ASM30694v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella;s__Bordetella pertussis PRJEB144 568706 SAMEA2272749 ASM30694v1 Complete Genome 2013-12-20T12:43:57.896 WTSI 99.99 100 0 99.83 0.03 GCF_000306945.1 3847 3937 3937 16 9 64 1 Bordetella_pertussis_homd_HMT_828 GCA_000307025.1 HMT-825 ATCC 19117 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-825 Listeria monocytogenes ATCC 19117 1 2951805 37.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/307/025/GCA_000307025.1_ASM30702v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes_B PRJEA51859 882095 SAMEA2271997 ASM30702v1 Complete Genome 2013-12-20T12:42:45.260 ERA-NET / Spatelis 99.47 99.45 0 99.99 0.64 GCF_000307025.1 2843 3022 3022 93 18 67 1 Listeria_monocytogenes_homd_HMT_825 GCA_000307535.1 HMT-745 A20 Named Cultivated Pathogen (Abundance: Scarce) HMT-745 Streptococcus pyogenes A20 1 1837281 38.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/307/535/GCA_000307535.1_ASM30753v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes PRJNA175952 1235829 SAMN02603640 ASM30753v1 Complete Genome 2014-01-30T14:21:44.147 National Cheng Kung University 99.89 100 0 100 0.46 GCF_000307535.1 1761 1898 1898 51 18 67 1 Streptococcus_pyogenes_homd_HMT_745 GCA_000307915.1 HMT-229 C1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-229 Arthrospira platensis C1 1 6089210 46.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/307/915/GCA_000307915.1_ASM30791v1 d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira;s__Limnospira fusiformis PRJNA67617 459495 SAMN02470135 ASM30791v1 Chromosome Newbler v. 2.3 2013-12-19T13:09:59.290 Sanger; 454 GS FLX Titanium King Mongkuts University of Technology Thonburi, Thailand 28.0x 93.76 99.71 0.66 100 0.2 GCF_000307915.1 AFXD01 5518 5802 5802 233 6 44 1 Arthrospira_platensis_homd_HMT_229 GCA_000308055.1 HMT-181 ph3 Named NVP Cultivated Oral (Abundance: Medium) HMT-181 Schaalia lingnae ph3 10 1864179 56.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/308/055/GCA_000308055.1_ASM30805v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000308055 PRJEA82081 1118058 SAMEA2272301 ASM30805v1 Contig 2013-12-20T12:43:17.966 France:Marseille host stool sample URMITE CNRS UMR 6236 IRD 198 99.84 0.71 99.83 0.09 GCF_000308055.1 CAGY01 1608 1668 1668 7 4 48 1 Schaalia_lingnae_homd_HMT_181 GCA_000311825.1 HMT-187 ph5 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-187 Peptoniphilus grossensis ph5 8 2101866 36.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/311/825/GCA_000311825.1_ASM31182v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A grossensis PRJEA82079 1118057 SAMEA2271924 ASM31182v1 Scaffold 2013-12-20T12:42:35.156 France:Marseille host stool sample URMITE CNRS UMR 6236 IRD 198 99.18 0 98.49 0.13 GCF_000311825.1 CAGX01 1983 2039 2039 27 2 26 1 Peptoniphilus_grossensis_homd_HMT_187 GCA_000312445.1 HMT-272 CCUG 55929 Named Cultivated Oral (Abundance: Scarce) HMT-272 Phocaeicola abscessus CCUG 55929 14 2536876 47.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/312/445/GCA_000312445.1_ASM31244v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola abscessus PRJEB57 1204719 SAMEA2272382 ASM31244v1 Scaffold 2013-12-20T12:43:24.310 ebi 96.28 1.12 85.47 0 GCF_000312445.1 CAKQ01 2072 2134 2134 8 2 51 1 Phocaeicola_abscessus_homd_HMT_272 GCA_000312505.3 HMT-929 9401234 Unnamed Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-929 Peptoniphilaceae [G3] bacterium HMT-929 9401234 7 1709677 34.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/312/505/GCA_000312505.3_Cb_9401234 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria;s__Fenollaria massiliensis PRJEB76 938288 SAMEA2272216 Cb_9401234 Scaffold 2013-12-20T12:43:09.906 ebi 20.0x GCF_000312505.2 CALI02 1665 1725 1725 30 3 26 1 Fenollaria_massiliensis_homd_HMT_929 GCA_000313615.1 HMT-763 CSUNSWCD Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae CSUNSWCD 23 2125173 45.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/313/615/GCA_000313615.1_Velvet_assembly_of_Campylobacter_showae_CSUNSWCD d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae_A PRJNA177777 1244083 SAMN01806160 Velvet assembly of Campylobac Contig Velvet v. 1.2.06 2012-11-12T09:06:20.957 Illumina HiSeq University of New South Wales 800.0x 92.21 99.13 0.37 99.78 0.08 GCF_000313615.1 AMZQ01 2136 2183 2183 5 2 39 1 Campylobacter_showae_homd_HMT_763 GCA_000313655.1 HMT-644 BA1 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius BA1 48 1965880 37.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/313/655/GCA_000313655.1_contig d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA178554 1248420 SAMN02222948 contig Contig Newbler v. 2.7 2013-07-02T12:05:35.430 454 FLX Titanium; PacBio RS Institute for Genome Sciences 30.0x 98.4 99.53 2.61 99.99 3.2 GCF_000313655.1 ANFT01 1931 2043 2043 37 10 64 1 Streptococcus_intermedius_homd_HMT_644 GCA_000314675.2 HMT-559 ATCC 49717 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-559 Afipia broomeae ATCC 49717 4 5261968 61.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/314/675/GCA_000314675.2_Afip_broo_ATCC_49717_V1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia;s__Afipia broomeae PRJNA52155 883078 SAMN02596753 Afip_broo_ATCC_49717_V1 Scaffold ALLPATHS v. R39721 2014-01-27T09:48:49.440 Illumina Broad Institute 110.0x 99.68 0.63 99.99 1.16 GCF_000314675.2 AGWX01 5039 5129 5129 32 3 54 1 Afipia_broomeae_homd_HMT_559 GCA_000314775.2 HMT-071 F0441 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus F0441 1 2000650 41.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/314/775/GCA_000314775.2_Strept_sp_F0441_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000314775 PRJNA64899 999424 SAMN02463945 Strept_sp_F0441_V1 Scaffold ALLPATHS v. R39099 2013-12-18T11:11:58.247 not determined Illumina Broad Institute 143.0x 99.87 0.2 99.98 0.17 GCF_000314775.2 AGZY01 1898 2025 2025 49 12 65 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000314775.2 HMT-071 F0441 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus F0441 1 2000650 41.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/314/775/GCA_000314775.2_Strept_sp_F0441_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000314775 PRJNA64899 999424 SAMN02463945 Strept_sp_F0441_V1 Scaffold ALLPATHS v. R39099 2013-12-18T11:11:58.247 not determined Illumina Broad Institute 143.0x 99.87 0.2 99.98 0.17 GCF_000314775.2 AGZY01 1898 2025 2025 49 12 65 1 Streptococcus_oralis_HMT_071_398_707 GCA_000314795.2 HMT-066 F0442 Unnamed Cultivated Oral (Abundance: Medium) HMT-066 Streptococcus sp. HMT-066 F0442 3 2231248 41.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/314/795/GCA_000314795.2_Strept_sp_F0442_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000314795 PRJNA64901 999425 SAMN02463946 Strept_sp_F0442_V1 Scaffold ALLPATHS v. R39099 2013-12-18T11:11:58.333 not determined Illumina Broad Institute 141.0x 100 0.85 99.95 0.04 GCF_000314795.2 AGZZ01 2140 2253 2253 39 12 61 1 GCA_000315445.1 HMT-831 ATCC 51267 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-831 Alloiococcus otitis ATCC 51267 8 1806596 45.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/315/445/GCA_000315445.1_Allo_otit_ATCC_51267_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alloiococcus;s__Alloiococcus otitis PRJNA52161 883081 SAMN02463901 Allo_otit_ATCC_51267_V1 Scaffold allpaths v. R39980 2013-12-18T11:11:52.643 not determined Illumina Broad Institute 115.0x 99.99 97.28 0.54 96.98 0.62 GCF_000315445.1 AGXA01 1618 1730 1730 50 9 52 1 Alloiococcus_otitis_homd_HMT_831 GCA_000315545.1 HMT-133 F0473 Unnamed Cultivated Oral (Abundance: Scarce) HMT-133 Selenomonas sp. HMT-133 F0473 2 2067540 58.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/315/545/GCA_000315545.1_Seleno_sp_F0473_V1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda sp000315545 PRJNA64897 999423 SAMN02463944 Seleno_sp_F0473_V1 Scaffold allpaths v. R39099 2013-12-18T11:11:58.157 not determined Illumina Broad Institute 227.0x 99.31 0 99.94 0.02 GCF_000315545.1 AGZT01 1883 1962 1962 19 6 53 1 Selenomonas_sp_HMT_133_homd_HMT_133 GCA_000316075.2 HMT-128 ACS-027-V-Sch2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis ACS-027-V-Sch2 4 2611013 34.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/316/075/GCA_000316075.2_Stap_lugd_ACS-027-V-Sch2_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA52127 883164 SAMN02463890 Stap_lugd_ACS-027-V-Sch2_V1 Scaffold ALLPATHS v. R39099 2013-12-18T11:11:51.007 not determined Illumina Broad Institute 144.0x 99.56 99.61 0 100 0.04 GCF_000316075.2 AGZW01 2412 2575 2575 86 15 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_000317305.3 HMT-692 VKM Ac-1815D Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-692 Mycolicibacterium neoaurum VKM Ac-1815D 1 5421267 66.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/317/305/GCA_000317305.3_ASM31730v3 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium neoaurum_A PRJNA177066 700508 SAMN02641502 ASM31730v3 Complete Genome Velvet v. 1.2.03 2014-02-13T12:40:40.050 missing missing Illumina GAIIx; Illumina HiSeq Laboratory of microbiological transformation of organic compounds, G.K.Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences 200.0x 92.87 99.62 1.44 100 0.01 GCF_000317305.3 5088 5173 5173 26 6 52 1 Mycolicibacterium_neoaurum_homd_HMT_692 GCA_000318095.2 HMT-473 F0040 Unnamed Cultivated Oral (Abundance: High) HMT-473 Alloprevotella sp. HMT-473 F0040 24 2553017 46.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/095/GCA_000318095.2_ASM31809v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella sp000318095 PRJNA67205 1035197 SAMN02436797 ASM31809v2 Scaffold Velvet v. 1.1.04 2013-12-04T15:03:53.306 oral cavity Illumina Washington University Genome Center 226.0x 97.12 0.37 96.68 0.46 GCF_000318095.2 AMEK01 2000 2059 2059 11 3 44 1 Alloprevotella_sp_HMT_473_homd_HMT_473 GCA_000318115.1 HMT-542 VPI 4330 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius VPI 4330 91 1988451 36.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/115/GCA_000318115.1_ASM31811v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA67203 1035196 SAMN02436860 ASM31811v1 Scaffold Velvet v. 1.1.04 2013-12-04T15:03:56.910 oral cavity Illumina Washington University Genome Center 501.0x 99.91 100 0 98.48 2.32 GCF_000318115.1 AMEL01 1851 1911 1911 31 3 25 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_000318135.1 HMT-595 F0235 Named Cultivated Oral (Abundance: High) HMT-595 Corynebacterium durum F0235 20 2809576 56.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/135/GCA_000318135.1_ASM31813v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium durum PRJNA67201 1035195 SAMN02436928 ASM31813v1 Scaffold Velvet v. 1.1.04 2013-12-04T15:04:01.563 oral cavity Illumina Washington University Genome Center 226.0x 97.32 99.55 0.45 99.99 0.23 GCF_000318135.1 AMEM01 2579 2646 2646 15 2 49 1 Corynebacterium_durum_homd_HMT_595 GCA_000318175.2 HMT-138 F0429 Named Cultivated Oral (Abundance: Low) HMT-138 Selenomonas timonae F0429 33 2384529 56.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/175/GCA_000318175.2_ASM31817v2 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda timonae PRJNA80253 1127695 SAMN02436930 ASM31817v2 Scaffold Velvet v. 1.1.04 2013-12-04T15:04:01.783 oral cavity Illumina Washington University 161.0x 99.65 0.05 99.97 0.14 GCF_000318175.2 AMEO01 2247 2322 2322 19 3 52 1 Selenomonas_timonae_homd_HMT_138 GCA_000318195.2 HMT-781 F0055 Named Cultivated Oral (Abundance: Medium) HMT-781 Hoylesella saccharolytica F0055 71 2853490 43.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/195/GCA_000318195.2_ASM31819v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella saccharolytica PRJNA80251 1127699 SAMN02436685 ASM31819v2 Scaffold Velvet v. 1.1.04 2013-12-04T15:03:46.876 oral cavity Illumina Washington University 140.0x 96.97 99.66 0 99.82 0.01 GCF_000318195.2 AMEP01 2263 2318 2318 5 3 46 1 Hoylesella_saccharolytica_homd_HMT_781 GCA_000318215.2 HMT-283 F0037 Named Cultivated Oral (Abundance: Medium) HMT-283 Porphyromonas catoniae F0037 18 2101485 51.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/215/GCA_000318215.2_ASM31821v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas catoniae PRJNA80249 1127696 SAMN02436931 ASM31821v2 Scaffold Velvet v. 1.1.04 2013-12-04T15:04:01.877 oral cavity Illumina Washington University 194.0x 96.44 95.05 0 99.9 0.07 GCF_000318215.2 AMEQ01 1690 1748 1748 7 3 47 1 Porphyromonas_catoniae_homd_HMT_283 GCA_000318235.2 HMT-020 F0370 Unnamed Cultivated Oral (Abundance: Scarce) HMT-020 Neisseria sp. HMT-020 F0370 118 2358903 58.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/235/GCA_000318235.2_ASM31823v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp002237445 PRJNA80247 1127694 SAMN02436686 ASM31823v2 Scaffold Velvet v. 1.1.04 2013-12-04T15:03:46.937 oral cavity Illumina Washington University 173.0x 99.88 0 99.98 0.14 GCF_000318235.2 AMER01 2229 2291 2291 17 4 40 1 Neisseria_sp_HMT_020_homd_HMT_020 GCA_000318255.2 HMT-700 F0488 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea F0488 76 2634285 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/255/GCA_000318255.2_ASM31825v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA80245 1127693 SAMN02436932 ASM31825v2 Scaffold Velvet v. 1.1.04 2013-12-04T15:04:01.970 oral cavity Illumina Washington University 148.0x 100 0 99.99 0.12 GCF_000318255.2 AMES01 2236 2282 2282 7 2 36 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_000318275.2 HMT-332 F0381 Named NVP Cultivated Oral (Abundance: Medium) HMT-332 Capnocytophaga bilenii F0381 103 2656035 38.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/275/GCA_000318275.2_ASM31827v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga bilenii PRJNA80243 1127692 SAMN02436794 ASM31827v2 Scaffold Velvet v. 1.1.04 2013-12-04T15:03:53.100 oral cavity Illumina Washington University 169.0x 99.52 0.71 99.97 0.09 GCF_000318275.2 AMET01 2469 2519 2519 9 5 35 1 Capnocytophaga_bilenii_homd_HMT_332 GCA_000318295.1 HMT-326 F0382 Named Cultivated Oral (Abundance: Medium) HMT-326 Capnocytophaga endodontalis F0382 127 3218123 38.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/295/GCA_000318295.1_ASM31829v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga periodontitidis PRJNA67197 1035193 SAMN02436687 ASM31829v1 Scaffold Velvet v. 1.1.04 2013-12-04T15:03:47.013 oral cavity Illumina Washington University Genome Center 509.0x 100 0 99.99 0.48 GCF_000318295.1 AMEU01 3039 3092 3092 11 3 38 1 Capnocytophaga_periodontitidis_homd_HMT_326 GCA_000318315.2 HMT-700 F0483 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea F0483 63 2739607 39.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/315/GCA_000318315.2_ASM31831v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA80241 1127691 SAMN02436688 ASM31831v2 Scaffold Velvet v. 1.1.04 2013-12-04T15:03:47.073 oral cavity Illumina Washington University 158.0x 100 0 99.94 0.09 GCF_000318315.2 AMEV01 2318 2369 2369 7 3 40 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_000318335.2 HMT-181 F0379 Named NVP Cultivated Oral (Abundance: Medium) HMT-181 Schaalia lingnae F0379 14 1901306 56.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/335/GCA_000318335.2_ASM31833v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia pyogenes_B PRJNA80239 1127690 SAMN02436933 ASM31833v2 Scaffold Velvet v. 1.1.04 2013-12-04T15:04:02.060 oral cavity Illumina Washington University 205.0x 100 0.47 99.93 0.09 GCF_000318335.2 AMEW01 1635 1694 1694 7 3 48 1 Schaalia_lingnae_homd_HMT_181 GCA_000318355.2 HMT-524 KON Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica KON 40 1997160 39.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/355/GCA_000318355.2_ASM31835v2 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA80237 1128111 SAMN02436795 ASM31835v2 Scaffold Velvet v. 1.1.04 2013-12-04T15:03:53.160 oral cavity Illumina Washington University 229.0x 99.95 100 0 100 0.3 GCF_000318355.2 AMEX01 1856 1919 1919 19 2 41 1 Veillonella_atypica_homd_HMT_524 GCA_000327065.1 HMT-477 RCH2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-477 Stutzerimonas stutzeri RCH2 4 4600489 62.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/327/065/GCA_000327065.1_ASM32706v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;s__Stutzerimonas stutzeri_AE PRJNA60029 644801 SAMN02232046 ASM32706v1 Complete Genome Newbler v. 2.3 2013-07-12T10:59:50.826 Missing 454/Illumina DOE Joint Genome Institute 30.0x 87.28 99.94 0.14 100 0.13 GCF_000327065.1 4302 4423 4423 49 12 59 1 Stutzerimonas_stutzeri_homd_HMT_477 GCA_000327465.1 HMT-182 TNO-09.006 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-182 Anoxybacillus flavithermus TNO-09.006 1 2658425 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/327/465/GCA_000327465.1_Anoxybacillus_flavithermus_TNO-09.006_v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus;s__Anoxybacillus flavithermus_G PRJNA169174 1267580 SAMN02471214 Anoxybacillus flavithermus TNO Scaffold WGS v. 31-SEP-2011; SSPACE v. 31-SEP-2011 2013-12-19T13:34:52.367 dairy factory 454; Illumina; PacBio CMBI 50.0x 99.44 0 100 0.15 GCF_000327465.1 AMCM01 2862 3074 3074 138 11 62 1 Anoxybacillus_flavithermus_homd_HMT_182 GCA_000330825.2 HMT-550 DSM 20231 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus DSM 20231 16 2756322 32.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/330/825/GCA_000330825.2_SASA1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA177203 1241616 SAMN02470202 SASA1.0 Contig CLC genomics Workbench v. 5.0 2013-12-19T13:10:05.486 South Korea 454; Illumina MiSeq Korea University 350.0x 99.99 99.51 0.08 100 0.1 GCF_000330825.2 AMYL01 2519 2696 2696 105 12 59 1 Staphylococcus_aureus_homd_HMT_550 GCA_000332735.1 HMT-076 SG1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri SG1 9 2560716 32.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/332/735/GCA_000332735.1_ASM33273v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA167492 1194526 SAMN02604131 ASM33273v1 Complete Genome 2014-01-30T14:54:23.983 laboratory contaminant University of Alberta 99.67 99.73 0 100 0.26 GCF_000332735.1 2443 2575 2575 56 16 59 1 Staphylococcus_warneri_homd_HMT_076 GCA_000334515.1 HMT-153 EA1509E Named Cultivated Nasal (Abundance: Medium) HMT-153 Klebsiella aerogenes EA1509E 3 5591105 54.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/334/515/GCA_000334515.1_ASM33451v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella aerogenes PRJNA61107 935296 SAMEA3138432 ASM33451v1 Complete Genome 2014-11-21T08:58:46.350 Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergents (URMITE) 98.75 99.89 1.38 100 1.23 GCF_000334515.1 5275 5519 5519 129 26 88 1 Klebsiella_aerogenes_homd_HMT_153 GCA_000334655.1 HMT-734 PNI0006 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae PNI0006 3 2052382 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/334/655/GCA_000334655.1_ASM33465v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA89179 1159088 SAMN02299524 ASM33465v1 Scaffold Newbler v. 2.0.01.14 2013-08-02T12:07:46.887 not determined 454 Washington University 16.7x 99.48 99.56 0.21 100 0.39 GCF_000334655.1 AKRB01 2054 2184 2184 74 6 49 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000336235.1 HMT-693 F0103 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens F0103 131 3021735 42.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/336/235/GCA_000336235.1_Prev_nigr_F0103_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA43119 702439 SAMN02595377 Prev_nigr_F0103_V1 Contig Newbler v. 2.3-PostRelease-11/19/2009 2014-01-23T10:15:18.940 454 Broad Institute 35.0x 98.11 99.48 0.28 99.93 0.31 GCF_000336235.1 ADGJ01 2663 2726 2726 7 7 48 1 Prevotella_nigrescens_homd_HMT_693 GCA_000338095.1 HMT-853 DSM 7111 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-853 Corynebacterium urealyticum DSM 7111 1 2316065 64.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/338/095/GCA_000338095.1_ASM33809v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium urealyticum PRJNA183484 1267754 SAMN02603063 ASM33809v1 Complete Genome Newbler v. 2.6; G4All v. 1.0.5 2014-01-30T11:19:29.300 Germany ectopic kidney of a 9-year-old patient 454 Genome Sequencer FLX System, Ion Torrent PGM Sequencer Center for Biotechnology 59.0x 98.43 99.54 0.09 99.99 0.99 GCF_000338095.1 1966 2039 2039 8 9 55 1 Corynebacterium_urealyticum_homd_HMT_853 GCA_000338455.1 HMT-584 SP37 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola SP37 2 2823766 38.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/338/455/GCA_000338455.1_Trep_dent_SP37_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64927 999438 SAMN02596726 Trep_dent_SP37_V1 Scaffold ALLPATHS v. R37753 2014-01-27T09:48:47.333 Illumina Broad Institute 328.0x 96.95 100 0 99.96 0.04 GCF_000338455.1 AGEA01 2589 2648 2648 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000338475.1 HMT-584 SP33 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola SP33 4 2933485 38.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/338/475/GCA_000338475.1_Trep_dent_SP33_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola_A PRJNA64925 999437 SAMN02596725 Trep_dent_SP33_V1 Scaffold ALLPATHS v. R37753 2014-01-27T09:48:47.283 Illumina Broad Institute 200.0x 94.23 100 0 99.98 0.16 GCF_000338475.1 AGDZ01 2704 2763 2763 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000338515.1 HMT-584 MYR-T Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola MYR-T 2 2935848 38.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/338/515/GCA_000338515.1_Trep_dent_MYR-T_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64917 999433 SAMN02596723 Trep_dent_MYR-T_V1 Scaffold ALLPATHS v. R37753 2014-01-27T09:48:47.177 Illumina Broad Institute 200.0x 97.27 100 0 99.83 0.3 GCF_000338515.1 AGDX01 2696 2758 2758 11 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000338595.1 HMT-584 ATCC 33521 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola ATCC 33521 3 2762110 38.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/338/595/GCA_000338595.1_Trep_dent_ATCC_33521_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64909 999429 SAMN02596719 Trep_dent_ATCC_33521_V1 Scaffold ALLPATHS v. R37753 2014-01-27T09:48:46.943 Illumina Broad Institute 200.0x 99.97 99.19 0.81 97.76 0.31 GCF_000338595.1 AGDT01 2507 2568 2568 10 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000338615.1 HMT-584 ATCC 33520 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola ATCC 33520 2 2886890 38.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/338/615/GCA_000338615.1_Trep_dent_ATCC_33520_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64907 999428 SAMN02596718 Trep_dent_ATCC_33520_V1 Scaffold ALLPATHS v. R37753 2014-01-27T09:48:46.863 Illumina Broad Institute 200.0x 97.31 99.6 0 99.92 0.26 GCF_000338615.1 AGDS01 2627 2690 2690 12 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000338635.1 HMT-584 ASLM Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola ASLM 2 2768236 38.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/338/635/GCA_000338635.1_Trep_dent_ASLM_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64905 999427 SAMN02596717 Trep_dent_ASLM_V1 Scaffold ALLPATHS v. R37753 2014-01-27T09:48:46.803 Illumina Broad Institute 200.0x 97.22 99.06 0 99.81 0.13 GCF_000338635.1 AGDR01 2532 2590 2590 8 6 43 1 Treponema_denticola_homd_HMT_584 GCA_000339055.1 HMT-686 S1B Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans S1B 132 2006359 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/055/GCA_000339055.1_ASM33905v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49853 857105 SAMN02428982 ASM33905v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.500 Turkey oral cavity Illumina GAII single end reads Cornell University 50.0x 99.27 100 0 100 0.07 GCF_000339055.1 AHRC01 1877 1942 1942 28 3 33 1 Streptococcus_mutans_homd_HMT_686 GCA_000339075.1 HMT-686 SA41 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans SA41 104 1952324 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/075/GCA_000339075.1_ASM33907v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49859 857103 SAMN02429080 ASM33907v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.320 South Africa oral cavity Illumina GAII single end reads Cornell University 50.0x 99.27 100 0 100 0.06 GCF_000339075.1 AHRE01 1839 1898 1898 26 4 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339095.1 HMT-686 SF12 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans SF12 107 1925888 36.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/095/GCA_000339095.1_ASM33909v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49861 857102 SAMN02429033 ASM33909v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.440 USA oral cavity Illumina GAII single end reads Cornell University 50.0x 99.35 100 0 100 0.12 GCF_000339095.1 AHRF01 1834 1891 1891 25 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339115.1 HMT-686 R221 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans R221 109 1983724 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/115/GCA_000339115.1_ASM33911v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49863 857101 SAMN02429034 ASM33911v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.493 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.34 100 0.37 100 0.11 GCF_000339115.1 AHRG01 1870 1927 1927 25 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339135.1 HMT-686 M230 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans M230 139 1917450 36.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/135/GCA_000339135.1_ASM33913v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49865 857100 SAMN02428927 ASM33913v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:26.010 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.24 97.38 0 99.95 0.08 GCF_000339135.1 AHRH01 1784 1844 1844 27 3 29 1 Streptococcus_mutans_homd_HMT_686 GCA_000339155.1 HMT-686 15JP3 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 15JP3 87 1932974 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/155/GCA_000339155.1_ASM33915v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49759 857152 SAMN02429081 ASM33915v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.363 oral cavity Illumina GAII single end reads Cornell University 50.0x 99.32 100 0 100 0.05 GCF_000339155.1 AHRJ01 1832 1890 1890 26 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339175.1 HMT-686 4SM1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 4SM1 97 2005341 36.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/175/GCA_000339175.1_ASM33917v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49763 857150 SAMN02429083 ASM33917v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.433 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.15 100 0.59 100 0.06 GCF_000339175.1 AHRL01 1817 1873 1873 24 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339195.1 HMT-686 2ST1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 2ST1 111 1965562 36.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/195/GCA_000339195.1_ASM33919v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49767 857148 SAMN02428984 ASM33919v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.590 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.32 100 0 100 0.05 GCF_000339195.1 AHRN01 1849 1909 1909 26 3 30 1 Streptococcus_mutans_homd_HMT_686 GCA_000339215.1 HMT-686 4VF1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 4VF1 127 2008731 36.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/215/GCA_000339215.1_ASM33921v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49771 857146 SAMN02429085 ASM33921v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.507 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 98.94 100 0.77 100 0.54 GCF_000339215.1 AHRQ01 1838 1897 1897 27 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339235.1 HMT-686 15VF2 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 15VF2 117 2021665 36.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/235/GCA_000339235.1_ASM33923v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49773 857145 SAMN02429086 ASM33923v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.543 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.06 100 0.85 100 0.08 GCF_000339235.1 AHRR01 1841 1901 1901 26 3 30 1 Streptococcus_mutans_homd_HMT_686 GCA_000339255.1 HMT-686 11VS1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 11VS1 155 1861960 36.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/255/GCA_000339255.1_ASM33925v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49777 857143 SAMN02428928 ASM33925v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:26.063 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.29 92.01 0.19 94.43 0.13 GCF_000339255.1 AHRT01 1753 1811 1811 26 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339275.1 HMT-686 5SM3 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 5SM3 86 1943643 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/275/GCA_000339275.1_ASM33927v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49779 857142 SAMN02428985 ASM33927v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.633 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.12 100 0 100 0.07 GCF_000339275.1 AHRU01 1820 1881 1881 27 3 30 1 Streptococcus_mutans_homd_HMT_686 GCA_000339295.1 HMT-686 NFSM2 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NFSM2 115 1990978 36.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/295/GCA_000339295.1_ASM33929v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49781 857141 SAMN02428986 ASM33929v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.670 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.36 100 0 100 0.13 GCF_000339295.1 AHRV01 1857 1916 1916 27 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339315.1 HMT-686 A9 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans A9 105 1868494 36.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/315/GCA_000339315.1_ASM33931v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49785 857139 SAMN02429025 ASM33931v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.173 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.28 96.44 0 99.92 0.1 GCF_000339315.1 AHRX01 1767 1824 1824 25 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339335.1 HMT-686 N29 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans N29 110 1965509 36.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/335/GCA_000339335.1_ASM33933v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49787 857138 SAMN02429072 ASM33933v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:31.967 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.12 100 0 100 0.08 GCF_000339335.1 AHRY01 1831 1894 1894 30 4 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339355.1 HMT-686 NMT4863 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NMT4863 97 1926604 36.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/355/GCA_000339355.1_ASM33935v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49789 857137 SAMN02429073 ASM33935v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.000 Japan oral cavity Illumina GAII single end reads Cornell University 50.0x 99.08 100 0 100 0.07 GCF_000339355.1 AHRZ01 1801 1859 1859 26 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339375.1 HMT-686 T4 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans T4 113 1966047 36.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/375/GCA_000339375.1_ASM33937v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49799 857132 SAMN02429026 ASM33937v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.207 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.37 100 0 100 0.14 GCF_000339375.1 AHSE01 1840 1899 1899 27 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339395.1 HMT-686 NFSM1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NFSM1 131 2002107 36.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/395/GCA_000339395.1_ASM33939v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49803 857130 SAMN02429027 ASM33939v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.243 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.13 100 0 100 0.09 GCF_000339395.1 AHSG01 1901 1962 1962 26 3 31 1 Streptococcus_mutans_homd_HMT_686 GCA_000339415.1 HMT-686 NV1996 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NV1996 130 2015161 36.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/415/GCA_000339415.1_ASM33941v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49817 857123 SAMN02429029 ASM33941v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.307 USA oral cavity Illumina GAII single end reads Cornell University 50.0x 99.06 100 0.26 100 0.08 GCF_000339415.1 AHSN01 1889 1948 1948 27 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339435.1 HMT-686 SF14 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans SF14 97 1944789 36.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/435/GCA_000339435.1_ASM33943v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49823 857120 SAMN02429031 ASM33943v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.383 USA oral cavity Illumina GAII single end reads Cornell University 50.0x 99.02 98.88 0.82 99.99 0.25 GCF_000339435.1 AHSQ01 1822 1879 1879 25 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339455.1 HMT-686 SM6 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans SM6 112 1960471 36.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/455/GCA_000339455.1_ASM33945v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49825 857119 SAMN02429032 ASM33945v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.410 China: Hong Kong oral cavity Illumina GAII single end reads Cornell University 50.0x 99.18 100 0.75 100 0.06 GCF_000339455.1 AHSR01 1835 1894 1894 25 4 29 1 Streptococcus_mutans_homd_HMT_686 GCA_000339475.1 HMT-686 U2A Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans U2A 163 2099425 36.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/475/GCA_000339475.1_ASM33947v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49831 857116 SAMN02428977 ASM33947v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.283 Turkey oral cavity Illumina GAII single end reads Cornell University 50.0x 99.07 100 0.64 100 0.24 GCF_000339475.1 AHSU01 1958 2018 2018 27 4 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339495.1 HMT-686 NLML8 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NLML8 135 1963147 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/495/GCA_000339495.1_ASM33949v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49833 857115 SAMN02429068 ASM33949v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:31.783 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.13 100 0.07 100 0.08 GCF_000339495.1 AHSV01 1816 1874 1874 24 4 29 1 Streptococcus_mutans_homd_HMT_686 GCA_000339515.1 HMT-686 14D Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 14D 102 1969096 36.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/515/GCA_000339515.1_ASM33951v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49837 857113 SAMN02429069 ASM33951v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:31.837 Iceland oral cavity Illumina GAII single end reads Cornell University 50.0x 99.16 100 0.37 100 0.12 GCF_000339515.1 AHSY01 1841 1898 1898 25 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339535.1 HMT-686 21 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 21 120 1990074 36.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/535/GCA_000339535.1_ASM33953v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49839 857112 SAMN02428978 ASM33953v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.333 Iceland oral cavity Illumina GAII single end reads Cornell University 50.0x 99.31 100 0 100 0.06 GCF_000339535.1 AHSZ01 1883 1941 1941 26 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339555.1 HMT-686 B Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B 111 1948124 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/555/GCA_000339555.1_ASM33955v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49843 857110 SAMN02429070 ASM33955v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:31.873 Iceland oral cavity Illumina GAII single end reads Cornell University 50.0x 99.17 100 0.56 100 0.11 GCF_000339555.1 AHTB01 1828 1886 1886 25 4 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339575.1 HMT-686 SM1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans SM1 114 1994929 36.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/575/GCA_000339575.1_ASM33957v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49847 857108 SAMN02428981 ASM33957v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.467 China: Hong Kong oral cavity Illumina GAII single end reads Cornell University 50.0x 99.07 100 1.01 100 0.1 GCF_000339575.1 AHTD01 1862 1919 1919 25 4 27 1 Streptococcus_mutans_homd_HMT_686 GCA_000339595.1 HMT-686 8ID3 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 8ID3 100 1908740 36.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/595/GCA_000339595.1_ASM33959v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49757 857153 SAMN02429079 ASM33959v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.277 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.35 99.44 0 100 0.04 GCF_000339595.1 AHRB01 1801 1858 1858 25 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339615.1 HMT-686 SA38 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans SA38 91 1992890 36.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/615/GCA_000339615.1_ASM33961v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49855 857104 SAMN02428983 ASM33961v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.537 South Africa oral cavity Illumina GAII single end reads Cornell University 50.0x 99.16 100 0.96 100 0.04 GCF_000339615.1 AHRD01 1806 1862 1862 24 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339635.1 HMT-686 OMZ175 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans OMZ175 130 2003229 36.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/635/GCA_000339635.1_ASM33963v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49867 857099 SAMN02429035 ASM33963v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.533 oral cavity Illumina GAII single end reads Cornell University 50.0x 99.06 99.44 0.26 100 0.08 GCF_000339635.1 AHRI01 1878 1941 1941 27 3 32 1 Streptococcus_mutans_homd_HMT_686 GCA_000339655.1 HMT-686 1SM1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1SM1 102 2068485 36.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/655/GCA_000339655.1_ASM33965v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49761 857151 SAMN02429082 ASM33965v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.393 oral cavity Illumina GAII single end reads Cornell University 50.0x 99.1 100 0.59 100 0.08 GCF_000339655.1 AHRK01 1875 1932 1932 25 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339675.1 HMT-686 3SN1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 3SN1 142 2034346 36.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/675/GCA_000339675.1_ASM33967v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49765 857149 SAMN02429036 ASM33967v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.573 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.2 100 0 100 0.04 GCF_000339675.1 AHRM01 1914 1973 1973 27 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339695.1 HMT-686 11A1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 11A1 111 1921647 36.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/695/GCA_000339695.1_ASM33969v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49753 857155 SAMN02429037 ASM33969v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.603 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.26 100 0 100 0.06 GCF_000339695.1 AHRO01 1817 1875 1875 26 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339715.1 HMT-686 11SSST2 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 11SSST2 105 1969615 36.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/715/GCA_000339715.1_ASM33971v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49769 857147 SAMN02429084 ASM33971v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.477 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.14 100 0 100 0.12 GCF_000339715.1 AHRP01 1848 1911 1911 27 3 32 1 Streptococcus_mutans_homd_HMT_686 GCA_000339735.1 HMT-686 2VS1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 2VS1 98 1970005 36.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/735/GCA_000339735.1_ASM33973v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49775 857144 SAMN02429071 ASM33973v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:31.933 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 99.16 100 0.56 100 0.08 GCF_000339735.1 AHRS01 1854 1910 1910 25 3 27 1 Streptococcus_mutans_homd_HMT_686 GCA_000339755.1 HMT-686 NVAB Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NVAB 102 1944173 36.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/755/GCA_000339755.1_ASM33975v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49783 857140 SAMN02428929 ASM33975v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:26.097 USA oral cavity Illumina GAII single end reads Cornell University 50.0x 99.97 100 0 100 0.03 GCF_000339755.1 AHRW01 1846 1903 1903 26 3 28 0 Streptococcus_mutans_homd_HMT_686 GCA_000339775.1 HMT-686 A19 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans A19 108 1984020 36.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/775/GCA_000339775.1_ASM33977v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49791 857136 SAMN02428930 ASM33977v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:26.163 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.35 100 0 100 0.13 GCF_000339775.1 AHSA01 1862 1921 1921 27 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339795.1 HMT-686 U138 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans U138 153 1991956 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/795/GCA_000339795.1_ASM33979v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49793 857135 SAMN02429074 ASM33979v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.053 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.35 100 0 100 0.17 GCF_000339795.1 AHSB01 1861 1919 1919 26 4 27 1 Streptococcus_mutans_homd_HMT_686 GCA_000339815.1 HMT-686 G123 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans G123 122 1977039 36.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/815/GCA_000339815.1_ASM33981v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49795 857134 SAMN02428931 ASM33981v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:26.220 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.17 99.63 0.56 100 0.13 GCF_000339815.1 AHSC01 1857 1916 1916 25 5 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339835.1 HMT-686 M21 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans M21 106 1961974 36.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/835/GCA_000339835.1_ASM33983v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49797 857133 SAMN02429075 ASM33983v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.093 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.15 100 0.75 100 0.06 GCF_000339835.1 AHSD01 1835 1894 1894 25 4 29 1 Streptococcus_mutans_homd_HMT_686 GCA_000339855.1 HMT-686 N34 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans N34 102 1962026 36.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/855/GCA_000339855.1_ASM33985v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49801 857131 SAMN02428987 ASM33985v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.703 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.11 100 0.64 100 0.21 GCF_000339855.1 AHSF01 1832 1888 1888 24 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339875.1 HMT-686 NLML4 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NLML4 116 1968630 36.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/875/GCA_000339875.1_ASM33987v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49805 857129 SAMN02429028 ASM33987v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.277 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.18 100 0.56 100 0.13 GCF_000339875.1 AHSH01 1850 1907 1907 25 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339895.1 HMT-686 NLML5 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NLML5 105 1941389 36.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/895/GCA_000339895.1_ASM33989v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49807 857128 SAMN02428932 ASM33989v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:26.263 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.15 100 0.07 100 0.07 GCF_000339895.1 AHSI01 1810 1866 1866 24 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339915.1 HMT-686 NLML9 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NLML9 99 1996009 36.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/915/GCA_000339915.1_ASM33991v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49809 857127 SAMN02429076 ASM33991v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.140 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.17 100 0.37 100 0.11 GCF_000339915.1 AHSJ01 1882 1939 1939 26 3 27 1 Streptococcus_mutans_homd_HMT_686 GCA_000339935.1 HMT-686 M2A Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans M2A 115 1930238 36.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/935/GCA_000339935.1_ASM33993v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49811 857126 SAMN02428988 ASM33993v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.730 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.17 100 0 100 0.04 GCF_000339935.1 AHSK01 1816 1872 1872 24 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339955.1 HMT-686 N3209 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans N3209 113 1953403 36.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/955/GCA_000339955.1_ASM33995v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49813 857125 SAMN02429077 ASM33995v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.177 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.32 100 0 100 0.06 GCF_000339955.1 AHSL01 1822 1881 1881 26 4 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339975.1 HMT-686 N66 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans N66 113 2006044 36.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/975/GCA_000339975.1_ASM33997v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49815 857124 SAMN02428933 ASM33997v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:26.310 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.32 100 0 100 0.03 GCF_000339975.1 AHSM01 1904 1962 1962 26 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000339995.1 HMT-686 W6 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans W6 114 1991361 36.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/995/GCA_000339995.1_ASM33999v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49819 857122 SAMN02429078 ASM33999v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:32.220 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.16 100 0.37 100 0.11 GCF_000339995.1 AHSO01 1870 1927 1927 25 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000340015.1 HMT-686 SF1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans SF1 185 2081419 36.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/015/GCA_000340015.1_ASM34001v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49821 857121 SAMN02429030 ASM34001v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.347 USA oral cavity Illumina GAII single end reads Cornell University 50.0x 99.24 100 0.37 100 0.09 GCF_000340015.1 AHSP01 1949 2011 2011 30 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000340035.1 HMT-686 ST1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans ST1 131 1980457 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/035/GCA_000340035.1_ASM34003v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49827 857118 SAMN02429067 ASM34003v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:31.740 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.34 100 0 100 0.08 GCF_000340035.1 AHSS01 1869 1927 1927 26 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000340055.1 HMT-686 ST6 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans ST6 121 1925853 36.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/055/GCA_000340055.1_ASM34005v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49829 857117 SAMN02428976 ASM34005v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.250 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 99.19 100 0 100 0.03 GCF_000340055.1 AHST01 1827 1887 1887 27 4 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000340075.1 HMT-686 NLML1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NLML1 139 2036028 36.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/075/GCA_000340075.1_ASM34007v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49835 857114 SAMN02429023 ASM34007v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.113 United Kingdom oral cavity Illumina GAII single end reads Cornell University 50.0x 98.95 100 0.4 100 0.03 GCF_000340075.1 AHSW01 1868 1928 1928 27 4 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000340095.1 HMT-686 1ID3 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1ID3 90 1872370 36.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/095/GCA_000340095.1_ASM34009v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49755 857154 SAMN02429024 ASM34009v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:30.143 Brazil oral cavity Illumina GAII single end reads Cornell University 50.0x 98.98 95.44 0.45 99.93 0.07 GCF_000340095.1 AHSX01 1748 1808 1808 25 3 31 1 Streptococcus_mutans_homd_HMT_686 GCA_000340115.1 HMT-686 66-2A Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 66-2A 113 1953006 36.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/115/GCA_000340115.1_ASM34011v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49841 857111 SAMN02428979 ASM34011v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.380 Iceland oral cavity Illumina GAII single end reads Cornell University 50.0x 99 100 0.64 100 0.18 GCF_000340115.1 AHTA01 1817 1876 1876 25 4 29 1 Streptococcus_mutans_homd_HMT_686 GCA_000340135.1 HMT-686 SM4 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans SM4 152 1977578 36.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/135/GCA_000340135.1_ASM34013v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49845 857109 SAMN02428980 ASM34013v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.420 China: Hong Kong oral cavity Illumina GAII single end reads Cornell University 50.0x 99.2 100 0 100 0.05 GCF_000340135.1 AHTC01 1845 1907 1907 30 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000340155.1 HMT-686 24 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 24 119 2013675 36.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/155/GCA_000340155.1_ASM34015v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49849 857107 SAMN02428934 ASM34015v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:26.343 Iceland oral cavity Illumina GAII single end reads Cornell University 50.0x 99.16 100 0.37 100 0.11 GCF_000340155.1 AHTE01 1897 1955 1955 25 3 29 1 Streptococcus_mutans_homd_HMT_686 GCA_000340175.1 HMT-686 U2B Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans U2B 103 1960144 36.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/175/GCA_000340175.1_ASM34017v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA49851 857106 SAMN02428989 ASM34017v1 Contig Velvet v. 0.7.55 2013-12-02T10:55:28.767 Turkey Illumina GAII single end reads Cornell University 50.0x 99.35 100 0 100 0.91 GCF_000340175.1 AGWE01 1853 1910 1910 25 3 28 1 Streptococcus_mutans_homd_HMT_686 GCA_000340375.1 HMT-569 OT 569 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-569 Eggerthia catenaformis OT 569 8 1945158 33.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/375/GCA_000340375.1_Lact_cate_OT_569_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Eggerthia;s__Eggerthia catenaformis PRJNA64881 999415 SAMN02596729 Lact_cate_OT_569_V1 Scaffold allpaths v. R37654 2014-01-27T09:48:47.550 Illumina Broad Institute 400.0x 99.07 99.06 0 100 0.2 GCF_000340375.1 AGEJ01 1863 1958 1958 31 16 47 1 Eggerthia_catenaformis_homd_HMT_569 GCA_000340605.1 HMT-584 H1-T Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola H1-T 1 2929700 38.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/605/GCA_000340605.1_Trep_dent_H1-T_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64913 999431 SAMN02596722 Trep_dent_H1-T_V1 Chromosome ALLPATHS v. R37753 2014-01-27T09:48:47.117 Illumina Broad Institute 360.0x 97.26 100 0 99.81 0.31 GCF_000340605.1 AGDW01 2685 2747 2747 11 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000340645.1 HMT-584 H-22 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola H-22 1 2757856 38.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/645/GCA_000340645.1_Trep_dent_H-22_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64915 999432 SAMN02596721 Trep_dent_H-22_V1 Chromosome ALLPATHS v. R37753 2014-01-27T09:48:47.057 Illumina Broad Institute 200.0x 97.49 100 0 99.95 0.08 GCF_000340645.1 AGDV01 2500 2558 2558 7 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000340685.1 HMT-584 ATCC 35404 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola ATCC 35404 1 2771508 38.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/685/GCA_000340685.1_Trep_dent_ATCC_35404_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64911 999430 SAMN02596720 Trep_dent_ATCC_35404_V1 Chromosome ALLPATHS v. R37753 2014-01-27T09:48:46.990 Illumina Broad Institute 377.0x 99.98 100 0.81 99.38 0.29 GCF_000340685.1 AGDU01 2510 2572 2572 10 7 44 1 Treponema_denticola_homd_HMT_584 GCA_000340705.1 HMT-584 OTK Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola OTK 1 2857526 37.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/705/GCA_000340705.1_Trep_dent_OTK_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64919 999434 SAMN02596724 Trep_dent_OTK_V1 Chromosome ALLPATHS v. R37753 2014-01-27T09:48:47.230 Illumina Broad Institute 200.0x 97.05 100 0 99.95 0.05 GCF_000340705.1 AGDY01 2634 2696 2696 11 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000340725.1 HMT-584 AL-2 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola AL-2 1 2843090 38.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/725/GCA_000340725.1_Trep_dent_AL-2_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64903 999426 SAMN02596716 Trep_dent_AL-2_V1 Chromosome ALLPATHS v. R37753 2014-01-27T09:48:46.710 Illumina Broad Institute 200.0x 97.47 100 0 99.84 0.13 GCF_000340725.1 AGDQ01 2612 2671 2671 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000340745.1 HMT-584 US-Trep Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola US-Trep 2 2765731 38.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/745/GCA_000340745.1_Trep_dent_US-Trep_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64933 999440 SAMN02596727 Trep_dent_US-Trep_V1 Scaffold ALLPATHS v. R37753 2014-01-27T09:48:47.390 Illumina Broad Institute 200.0x 97.22 100 0 99.85 0.14 GCF_000340745.1 AGEB01 2538 2597 2597 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000344255.1 HMT-071 1366 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 1366 14 1871850 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/344/255/GCA_000344255.1_Streptococcus_tigurinus_1366 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA188400 1282665 SAMN02469809 Streptococcus tigurinus 1366 Contig Edena v. 3.130110 2013-12-19T13:09:35.126 Switzerland joint aspirate Illumina MiSeq Geneva University Hospitals 130.0x 92.9 99.87 0.24 99.99 0.05 GCF_000344255.1 AORX01 1820 1912 1912 41 4 46 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000344255.1 HMT-071 1366 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 1366 14 1871850 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/344/255/GCA_000344255.1_Streptococcus_tigurinus_1366 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA188400 1282665 SAMN02469809 Streptococcus tigurinus 1366 Contig Edena v. 3.130110 2013-12-19T13:09:35.126 Switzerland joint aspirate Illumina MiSeq Geneva University Hospitals 130.0x 92.9 99.87 0.24 99.99 0.05 GCF_000344255.1 AORX01 1820 1912 1912 41 4 46 1 Streptococcus_oralis_HMT_071_398_707 GCA_000344275.1 HMT-071 AZ_3a Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus AZ_3a 22 2184662 40.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/344/275/GCA_000344275.1_Streptococcus_tigurinus_AZ_3a d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_E PRJNA188401 1282664 SAMN02469808 Streptococcus tigurinus AZ_3a Contig Edena v. 3.130110 2013-12-19T13:09:35.050 Switzerland blood culture Illumina MiSeq Geneva University Hospitals 140.0x 93.1 99.87 0.3 99.97 0.06 GCF_000344275.1 AORU01 2136 2244 2244 56 4 47 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000344275.1 HMT-071 AZ_3a Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus AZ_3a 22 2184662 40.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/344/275/GCA_000344275.1_Streptococcus_tigurinus_AZ_3a d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_E PRJNA188401 1282664 SAMN02469808 Streptococcus tigurinus AZ_3a Contig Edena v. 3.130110 2013-12-19T13:09:35.050 Switzerland blood culture Illumina MiSeq Geneva University Hospitals 140.0x 93.1 99.87 0.3 99.97 0.06 GCF_000344275.1 AORU01 2136 2244 2244 56 4 47 1 Streptococcus_oralis_HMT_071_398_707 GCA_000344295.2 HMT-763 CC57C Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae CC57C 273 2187351 45.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/344/295/GCA_000344295.2_velvet d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae_B PRJNA189774 1073353 SAMN02469328 velvet Contig Velvet v. May-2012 2013-12-19T13:00:58.523 colon adenocarcinoma surgical section Illumina MiSeq BC Cancer Agency 200.0x 92.81 100 1.43 99.68 1.9 GCF_000344295.2 AOTD01 2181 2219 2219 5 2 30 1 Campylobacter_showae_homd_HMT_763 GCA_000347795.1 HMT-686 5DC8 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 5DC8 9 2010949 36.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/347/795/GCA_000347795.1_5dc8_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA179252 1257037 SAMN02469959 5dc8_V1 Contig SOAPdenovo v. 1.0; Maq v. 0.6.6; Phrap v. 1.080721 2013-12-19T13:09:45.880 United Kingdom:London root caries Illumina HiSeq Institute of Bioprocess and Biosystems Engineering 100.0x 99.33 99.99 0.37 99.99 0.12 GCF_000347795.1 AOBX01 1871 1980 1980 28 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_000347815.1 HMT-686 KK21 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans KK21 2 2034595 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/347/815/GCA_000347815.1_KK21_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA179253 1257038 SAMN02469962 KK21_V1 Contig SOAPdenovo v. 1.0; Maq v. 0.6.6; Phrap v. 1.080721 2013-12-19T13:09:46.120 Germany:Jena enamel caries of an adult Illumina HiSeq Institute of Bioprocess and Biosystems Engineering 100.0x 99.34 99.99 0.37 99.99 0.3 GCF_000347815.1 AOBY01 1896 2011 2011 32 15 67 1 Streptococcus_mutans_homd_HMT_686 GCA_000347835.1 HMT-686 KK23 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans KK23 38 1976204 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/347/835/GCA_000347835.1_KK23_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA179254 1257039 SAMN02469955 KK23_V1 Scaffold SOAPdenovo v. 1.0; Maq v. 0.6.6; Phrap v. 1.080721 2013-12-19T13:09:45.603 Germany:Jena enamel caries of a child Illumina HiSeq Institute of Bioprocess and Biosystems Engineering 100.0x 99.13 100 0.88 100 0.07 GCF_000347835.1 AOBZ01 1863 1920 1920 31 0 25 1 Streptococcus_mutans_homd_HMT_686 GCA_000347855.1 HMT-686 AC4446 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans AC4446 42 2003697 36.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/347/855/GCA_000347855.1_AC4446_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA179255 1257040 SAMN02469957 AC4446_V1 Contig SOAPdenovo v. 1.0; Maq v. 0.6.6; Phrap v. 1.080721 2013-12-19T13:09:45.767 Germany:Dillingen a confirmed case of infective endocarditis Illumina HiSeq Institute of Bioprocess and Biosystems Engineering 100.0x 99.19 99.78 3 99.98 2.26 GCF_000347855.1 AOCA01 1861 1968 1968 26 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_000347875.1 HMT-686 ATCC 25175 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans ATCC 25175 10 1999673 36.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/347/875/GCA_000347875.1_ATCC25175_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA179256 1257041 SAMN02469958 ATCC25175_V1 Contig SOAPdenovo v. 1.0; Maq v. 0.6.6; Phrap v. 1.080721 2013-12-19T13:09:45.820 carious dentine Illumina HiSeq Institute of Bioprocess and Biosystems Engineering 100.0x 99.97 99.19 0 99.96 0.05 GCF_000347875.1 AOCB01 1864 1971 1971 27 15 64 1 Streptococcus_mutans_homd_HMT_686 GCA_000347895.1 HMT-686 NCTC 11060 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NCTC 11060 36 2021313 37.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/347/895/GCA_000347895.1_NCTC11060_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA179257 1257042 SAMN02469960 NCTC11060_V1 Contig SOAPdenovo v. 1.0; Maq v. 0.6.6; Phrap v. 1.080721 2013-12-19T13:09:45.970 Denmark blood Illumina HiSeq Institute of Bioprocess and Biosystems Engineering 100.0x 99.1 100 3.26 100 4.41 GCF_000347895.1 AOCC01 1874 1970 1970 27 12 56 1 Streptococcus_mutans_homd_HMT_686 GCA_000347935.1 HMT-768 DSM 20742 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus DSM 20742 283 2096203 43.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/347/935/GCA_000347935.1_DSM20742_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA179259 1123317 SAMN02469963 DSM20742_V1 Contig SOAPdenovo v. 1.0 2013-12-19T13:09:46.170 dental plaque Illumina HiSeq Institute of Bioprocess and Biosystems Engineering 100.0x 99.97 97 0.09 96.26 3.03 GCF_000347935.1 AOCE01 2099 2153 2153 28 4 21 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000348705.1 HMT-734 PCS8235 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae PCS8235 2 2076531 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/348/705/GCA_000348705.1_ASM34870v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA89169 1159083 SAMN02436861 ASM34870v1 Chromosome Newbler v. 2.0.01.14 2013-12-04T15:03:56.973 blood 454 Washington University 16.7x 98.92 99.6 0.21 100 0.06 GCF_000348705.1 ALJW01 2088 2229 2229 78 9 53 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000348745.1 HMT-330 EPB Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-330 Micavibrio aeruginosavorus EPB 1 2458610 54.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/348/745/GCA_000348745.1_ASM34874v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Micavibrionales;f__Micavibrionaceae;g__Micavibrio;s__Micavibrio aeruginosavorus_A PRJNA163341 349215 SAMN02604326 ASM34874v1 Complete Genome 2014-01-30T15:13:24.970 Weizmann Institute of Science 90.81 0.72 99.99 0.32 GCF_000348745.1 2316 2367 2367 6 3 41 1 Micavibrio_aeruginosavorus_homd_HMT_330 GCA_000360565.1 HMT-550 M0250 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus M0250 2 2895690 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/360/565/GCA_000360565.1_Stap_aure_M0250_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA88945 1158518 SAMN00809170 Stap_aure_M0250_V1 Scaffold allpaths v. R42314 2012-03-07T09:48:30.157 USA: Boston, MA Illumina Broad Institute 195.0x 98.95 99.51 0.08 100 0.57 GCF_000360565.1 AJCK01 2682 2883 2883 120 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000361145.1 HMT-550 M0427 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus M0427 2 2838730 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/361/145/GCA_000361145.1_Stap_aure_M0427_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA88615 1157029 SAMN00792155 Stap_aure_M0427_V1 Scaffold allpaths v. R41759 2012-02-23T12:04:29.707 USA: Boston, MA Illumina Broad Institute 169.0x 98.95 99.51 0.08 100 0.53 GCF_000361145.1 AIWP01 2605 2805 2805 119 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000364325.1 HMT-674 10063974 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-674 Atopobium minutum 10063974 2 1706966 48.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/364/325/GCA_000364325.1_Atop_minu_V1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium;s__Atopobium minutum PRJNA64799 997872 SAMN02596754 Atop_minu_V1 Scaffold allpaths v. R39721 2014-01-27T09:48:49.507 Illumina Broad Institute 128.0x 99.77 100 0 99.95 0.45 GCF_000364325.1 AGXC01 1538 1601 1601 10 6 46 1 Atopobium_minutum_homd_HMT_674 GCA_000364825.1 HMT-822 Beijing/NITR203 Named Cultivated Pathogen (Abundance: Scarce) HMT-822 Mycobacterium tuberculosis Beijing/NITR203 1 4411128 65.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/364/825/GCA_000364825.1_ASM36482v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium tuberculosis PRJNA193385 1306400 SAMN02603651 ASM36482v1 Complete Genome CLC bio Genomicworkbench v. 6.01 2014-01-30T14:21:44.843 Illumina National Institute of Tuberculosis Research, Chennai, India 70.0x 99.9 99.41 0 100 0.88 GCF_000364825.1 4158 4250 4250 37 3 51 1 Mycobacterium_tuberculosis_homd_HMT_822 GCA_000364865.1 HMT-850 F0333 Named Cultivated Oral (Abundance: Scarce) HMT-850 Schaalia cardiffensis F0333 15 2214851 61.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/364/865/GCA_000364865.1_ASM36486v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia cardiffensis PRJNA53007 888050 SAMN00260255 ASM36486v1 Scaffold Newbler v. 2.3-04192010 2011-04-26T16:25:23.603 United Kingdom oral 454 Baylor College of Medicine 34.0x 96.94 98.58 2.01 99.9 0.17 GCF_000364865.1 AQHZ01 1815 1879 1879 10 3 50 1 Schaalia_cardiffensis_homd_HMT_850 GCA_000367205.1 HMT-552 44067 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum 44067 1 2526138 63.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/367/205/GCA_000367205.1_ASM36720v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA157751 1170318 SAMN02603001 ASM36720v1 Complete Genome Newbler v. 2.8; CLC Genomics Workbench v. 6.0.1 2014-01-30T11:19:24.063 454; SOLiD BAYGEN 375.0x 98.66 100 0 99.99 0.25 GCF_000367205.1 2298 2376 2376 22 9 46 1 Cutibacterium_avidum_homd_HMT_552 GCA_000367505.1 HMT-182 NBRC 109594 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-182 Anoxybacillus flavithermus NBRC 109594 90 2772624 41.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/367/505/GCA_000367505.1_ASM36750v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus;s__Anoxybacillus kestanbolensis PRJDB1085 1315967 SAMD00036730 ASM36750v1 Contig Velvet v. 1.1.02 2015-09-16T16:10:33.000 Illumina/Solexa Yamaguchi University 275.0x 99.44 0.56 99.98 0.01 GCF_000367505.1 BARH01 2811 3029 3029 122 14 80 2 Anoxybacillus_flavithermus_homd_HMT_182 GCA_000368045.1 HMT-297 CIP 64.6 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-297 Acinetobacter johnsonii CIP 64.6 11 3608403 41.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/368/045/GCA_000368045.1_Acin_john_CIP_64_6_V1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter johnsonii PRJNA183324 1217663 SAMN01828184 Acin_john_CIP_64_6_V1 Scaffold allpaths v. R43933 2012-12-10T11:54:18.726 Unknown Duodenum Illumina Broad Institute 261.0x 99.99 100 0.27 100 0.1 GCF_000368045.1 APON01 3472 3599 3599 25 24 77 1 Acinetobacter_johnsonii_homd_HMT_297 GCA_000368765.1 HMT-282 CIP 64.5 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-282 Acinetobacter junii CIP 64.5 7 3357744 39.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/368/765/GCA_000368765.1_Acin_juni_CIP_64_5_V1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter junii PRJNA183286 1217664 SAMN01828161 Acin_juni_CIP_64_5_V1 Scaffold allpaths v. R43241 2012-12-10T11:54:17.370 Unknown urine Illumina Broad Institute 133.0x 99.97 100 0.27 100 0.02 GCF_000368765.1 APPX01 3112 3229 3229 20 24 72 1 Acinetobacter_junii_homd_HMT_282 GCA_000368885.1 HMT-010 NIPH 2130 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-010 Acinetobacter radioresistens NIPH 2130 6 3164924 41.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/368/885/GCA_000368885.1_Acin_radi_NIPH_2130_V1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens PRJNA183278 1217674 SAMN01087836 Acin_radi_NIPH_2130_V1 Scaffold allpaths v. R43241 2012-07-13T10:18:16.670 Unknown urine Illumina Broad Institute 281.0x 98.44 100 0 100 0.07 GCF_000368885.1 APQE01 2933 3030 3030 14 17 65 1 Acinetobacter_radioresistens_homd_HMT_010 GCA_000368905.1 HMT-010 CIP 103788 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-010 Acinetobacter radioresistens CIP 103788 13 3195486 42.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/368/905/GCA_000368905.1_Acin_radi_CIP_103788_V1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens PRJNA183277 981334 SAMN01087835 Acin_radi_CIP_103788_V1 Scaffold allpaths v. R43388 2012-07-13T10:18:16.580 Unknown cotton Illumina Broad Institute 86.0x 99.99 100 0 100 0.01 GCF_000368905.1 APQF01 2947 3041 3041 15 14 64 1 Acinetobacter_radioresistens_homd_HMT_010 GCA_000369385.1 HMT-554 CIP 70.34 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-554 Acinetobacter baumannii CIP 70.34 23 4028903 39.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/369/385/GCA_000369385.1_Acin_baum_CIP_70_34T_V1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii PRJNA183249 575584 SAMN01828140 Acin_baum_CIP_70_34T_V1 Scaffold allpaths v. R43241 2012-12-10T11:54:15.846 Unknown urine Illumina Broad Institute 125.0x 99.99 99.63 0 100 0.12 GCF_000369385.1 APRG01 3753 3897 3897 41 26 76 1 Acinetobacter_baumannii_homd_HMT_554 GCA_000372365.1 HMT-531 DSM 8324 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans DSM 8324 33 2085887 44.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/372/365/GCA_000372365.1_ASM37236v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA165361 1120957 SAMN02256508 ASM37236v1 Contig Velvet v. 1.1.04; ALLPATHS v. r41043 2013-07-17T10:56:20.006 Denmark abscess Illumina DOE Joint Genome Institute 99.99 99.77 0 100 0.02 GCF_000372365.1 AQUU01 2016 2128 2128 57 7 47 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_000373045.1 HMT-214 DSM 19757 Named Cultivated Oral (Abundance: Scarce) HMT-214 Leptotrichia shahii DSM 19757 20 2144606 29.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/373/045/GCA_000373045.1_ASM37304v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia shahii PRJNA169703 1122172 SAMN02440425 ASM37304v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:07:13.543 Norway Illumina DOE Joint Genome Institute 99.98 100 1.14 99.96 0.26 GCF_000373045.1 ARDD01 1954 2034 2034 32 6 41 1 Leptotrichia_shahii_homd_HMT_214 GCA_000373085.1 HMT-976 DSM 17679 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-976 Phocaeicola massiliensis DSM 17679 94 4510688 42.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/373/085/GCA_000373085.1_ASM37308v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola massiliensis PRJNA169707 1121098 SAMN02441379 ASM37308v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:14:35.510 France Illumina DOE Joint Genome Institute 99.98 99.26 0.19 99.99 0.06 GCF_000373085.1 ARDF01 3860 3941 3941 18 7 55 1 Phocaeicola_massiliensis_homd_HMT_976 GCA_000373345.1 HMT-222 DSM 19758 Named Cultivated Oral (Abundance: Medium) HMT-222 Leptotrichia wadei DSM 19758 64 2316529 29.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/373/345/GCA_000373345.1_ASM37334v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei PRJNA169727 1122174 SAMN02440426 ASM37334v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:07:13.660 Missing Illumina DOE Joint Genome Institute 99.99 100 2.27 100 0.34 GCF_000373345.1 ARDS01 2087 2154 2154 16 7 43 1 Leptotrichia_wadei_homd_HMT_222 GCA_000373605.1 HMT-543 DSM 20563 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus DSM 20563 14 1938196 38.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/373/605/GCA_000373605.1_ASM37360v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA169750 1000570 SAMN02441718 ASM37360v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:21:16.570 Missing Illumina DOE Joint Genome Institute 99.99 100 0 99.97 0.04 GCF_000373605.1 AREF01 1857 1932 1932 35 4 35 1 Streptococcus_anginosus_homd_HMT_543 GCA_000373705.1 HMT-378 DSM 21469 Named Cultivated Oral (Abundance: Low) HMT-378 Prevotella micans DSM 21469 50 2435292 45.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/373/705/GCA_000373705.1_ASM37370v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella micans PRJNA169761 1122987 SAMN02441704 ASM37370v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:21:15.306 United Kingdom Illumina DOE Joint Genome Institute 99.95 99.29 0 99.48 0.11 GCF_000373705.1 AREK01 2004 2055 2055 5 2 43 1 Prevotella_micans_homd_HMT_378 GCA_000373785.1 HMT-484 DSM 14972 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-484 Erysipelothrix tonsillarum DSM 14972 4 1931022 36.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/373/785/GCA_000373785.1_ASM37378v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Erysipelothrix;s__Erysipelothrix tonsillarum PRJNA169768 1121874 SAMN02440433 ASM37378v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:07:14.333 Japan Illumina DOE Joint Genome Institute 99.99 100 0 97.27 0.53 GCF_000373785.1 AREO01 1789 1879 1879 31 3 55 1 GCA_000374605.1 HMT-842 DSM 20703 Named Cultivated Skin (Abundance: Medium) HMT-842 Campylobacter ureolyticus DSM 20703 35 1740590 28.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/374/605/GCA_000374605.1_ASM37460v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B ureolyticus PRJNA174981 1121102 SAMN02440444 ASM37460v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. R37654 2013-12-11T13:07:17.290 Canada Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 98.95 0 100 0.1 GCF_000374605.1 ARGD01 1771 1821 1821 6 2 41 1 Campylobacter_ureolyticus_homd_HMT_842 GCA_000375365.1 HMT-328 DSM 44356 Named Cultivated Skin (Abundance: Scarce) HMT-328 Corynebacterium mastitidis DSM 44356 39 2370005 69.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/375/365/GCA_000375365.1_ASM37536v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium mastitidis PRJNA169809 1121365 SAMN02441393 ASM37536v1 Contig Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:20:52.623 Spain Illumina DOE Joint Genome Institute 99.67 0 99.98 0.09 GCF_000375365.1 AQXB01 2216 2283 2283 12 5 49 1 Corynebacterium_mastitidis_homd_HMT_328 GCA_000375505.1 HMT-686 DSM 20523 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans DSM 20523 20 1988767 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/375/505/GCA_000375505.1_ASM37550v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA169765 1123310 SAMN02441733 ASM37550v1 Contig Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:21:17.686 Missing Illumina DOE Joint Genome Institute 99.99 100 0 100 0.06 GCF_000375505.1 AQWT01 1878 1951 1951 29 4 39 1 Streptococcus_mutans_homd_HMT_686 GCA_000375525.1 HMT-059 DSM 44285 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum DSM 44285 22 2458635 56.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/375/525/GCA_000375525.1_ASM37552v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA169811 1121367 SAMN02441734 ASM37552v1 Contig Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:21:17.780 France Illumina DOE Joint Genome Institute 99.99 99.78 0 99.99 0.09 GCF_000375525.1 AQXC01 2211 2269 2269 6 4 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_000376325.1 HMT-580 DSM 6644 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus DSM 6644 8 1954904 44.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/376/325/GCA_000376325.1_ASM37632v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA174983 1121268 SAMN02441382 ASM37632v1 Contig Velvet v. 1.1.04; ALLPATHS v. R37654 2013-12-11T13:14:36.536 USA Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 99.51 0.37 99.65 0.07 GCF_000376325.1 AQXN01 1920 1963 1963 5 2 35 1 Campylobacter_curvus_homd_HMT_580 GCA_000376705.1 HMT-530 HL096PA1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes HL096PA1 2 2549775 60.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/376/705/GCA_000376705.1_ASM37670v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA81129 1134454 SAMN02604074 ASM37670v1 Complete Genome 2014-01-30T14:54:20.353 UCLA David Geffen School of Medicine 99.72 98.87 0.03 100 0.15 GCF_000376705.1 2380 2460 2460 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_000377625.1 HMT-572 DSM 19559 Named Cultivated Oral (Abundance: Medium) HMT-572 Prevotella veroralis DSM 19559 28 2845746 41.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/377/625/GCA_000377625.1_ASM37762v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella veroralis PRJNA178044 1122993 SAMN02441351 ASM37762v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. R37654 2013-12-11T13:14:32.716 Missing Illumina HiSeq 2000 DOE Joint Genome Institute 99.94 99.32 0 99.98 0.06 GCF_000377625.1 ARIR01 2414 2477 2477 9 5 48 1 Prevotella_veroralis_homd_HMT_572 GCA_000377685.1 HMT-311 DSM 18711 Named Cultivated Oral (Abundance: High) HMT-311 Segatella oris DSM 18711 46 3063215 43.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/377/685/GCA_000377685.1_ASM37768v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oris PRJNA178048 1122989 SAMN02440460 ASM37768v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. R37654 2013-12-11T13:07:19.026 Missing Illumina HiSeq 2000 DOE Joint Genome Institute 99.98 99.32 0.34 99.92 0.66 GCF_000377685.1 ARIU01 2583 2648 2648 8 4 52 1 Segatella_oris_homd_HMT_311 GCA_000378085.1 HMT-658 DSM 19665 Named Cultivated Oral (Abundance: Medium) HMT-658 Hoylesella loescheii DSM 19665 31 3508589 46.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/378/085/GCA_000378085.1_ASM37808v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella loescheii PRJNA181369 1122985 SAMN02441341 ASM37808v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. R37654 2013-12-11T13:14:31.993 Missing Illumina HiSeq 2000 DOE Joint Genome Institute 99.96 99.66 0 99.79 0 GCF_000378085.1 ARJO01 2813 2870 2870 7 5 44 1 Hoylesella_loescheii_homd_HMT_658 GCA_000378725.1 HMT-836 DSM 7455 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-836 Peptoniphilus lacrimalis DSM 7455 21 1849203 30.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/378/725/GCA_000378725.1_ASM37872v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacrimalis PRJNA182433 1122949 SAMN02441667 ASM37872v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:21:12.593 Missing Illumina HiSeq 2000 DOE Joint Genome Institute 99.97 99.3 0 99.57 0.59 GCF_000378725.1 ARKX01 1728 1816 1816 45 4 38 1 Peptoniphilus_lacrimalis_homd_HMT_836 GCA_000378745.1 HMT-797 DSM 23384 Named Cultivated Vaginal (Abundance: Medium) HMT-797 Prevotella amnii DSM 23384 77 2391937 36.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/378/745/GCA_000378745.1_ASM37874v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella amnii PRJNA182435 1122979 SAMN02440476 ASM37874v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. R37654 2013-12-11T13:07:20.673 Sweden Illumina HiSeq 2000 DOE Joint Genome Institute 99.97 99.66 0.34 99.99 0.1 GCF_000378745.1 ARKY01 1961 2021 2021 14 1 44 1 Prevotella_amnii_homd_HMT_797 GCA_000379145.1 HMT-597 USDA 76 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-597 Bradyrhizobium elkanii USDA 76 2 9484767 63.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/379/145/GCA_000379145.1_ASM37914v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii PRJNA162247 398525 SAMN02261261 ASM37914v1 Scaffold Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap v. 4.24 2013-07-19T14:58:15.603 USA Virginia 454-GS-FLX-Titanium; Illumina JGI 99.98 100 0.6 100 1.34 GCF_000379145.1 ARAG01 8951 9067 9067 60 3 52 1 Bradyrhizobium_elkanii_homd_HMT_597 GCA_000379965.1 HMT-299 DSM 19126 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis DSM 19126 12 2650108 38.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/379/965/GCA_000379965.1_ASM37996v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA165427 1122988 SAMN02256415 ASM37996v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r41043 2013-07-17T10:56:11.873 France Human blood culture Illumina DOE Joint Genome Institute 99.98 99.32 0.34 99.93 0.01 GCF_000379965.1 ARBZ01 2060 2113 2113 5 6 41 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_000380305.1 HMT-619 JCVI SC001 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis JCVI SC001 1 2426396 48.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/380/305/GCA_000380305.1_PgingivalisJCVISC001v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA167667 1195243 SAMN02436407 PgingivalisJCVISC001v1.0 Chromosome SPAdes v. 2.1 2013-12-04T14:28:21.873 biofilm in a hospital bathroom sink drain Illumina GAII The J. Craig Venter Institute 237.0x 98.54 97.88 0.63 99.82 0.58 GCF_000380305.1 APMB01 2093 2151 2151 12 3 42 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000381525.1 HMT-542 DSM 2949 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius DSM 2949 68 2106935 35.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/381/525/GCA_000381525.1_ASM38152v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA183057 1035196 SAMN02441325 ASM38152v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r42328 2013-12-11T13:14:30.736 Missing Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 100 0 99.96 0.69 GCF_000381525.1 ARMA01 1927 2033 2033 61 5 39 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_000382385.1 HMT-289 DSM 19339 Named Cultivated Oral (Abundance: Medium) HMT-289 Segatella maculosa DSM 19339 60 3314235 47.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/382/385/GCA_000382385.1_ASM38238v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella maculosa PRJNA187117 1122986 SAMN02440499 ASM38238v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:07:23.246 United Kingdom Illumina HiSeq 2000 DOE Joint Genome Institute 99.96 99.32 0.34 99.88 0.23 GCF_000382385.1 ARNR01 2766 2826 2826 7 4 48 1 Segatella_maculosa_homd_HMT_289 GCA_000382445.1 HMT-976 DSM 17679 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-976 Phocaeicola massiliensis DSM 17679 15 4646209 43.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/382/445/GCA_000382445.1_Bact_mass_DSM_17679_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola massiliensis PRJNA170352 1121098 SAMN02596944 Bact_mass_DSM_17679_V1 Scaffold ALLPATHS v. R42785 2014-01-27T09:48:59.823 Illumina Broad Institute 137.0x 99.98 99.26 0.19 99.99 0.04 GCF_000382445.1 AQHY01 3955 4060 4060 16 20 68 1 Phocaeicola_massiliensis_homd_HMT_976 GCA_000382805.1 HMT-398 CECT 7746 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani CECT 7746 8 1981087 41.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/382/805/GCA_000382805.1_ASM38280v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_AC PRJEB1503 1297534 SAMEA2272693 ASM38280v1 Scaffold 2013-12-20T12:43:52.900 Spain:Valencia human tooth surface CSISP 93.71 99.83 0.2 99.99 0.07 GCF_000382805.1 CAUJ01 1916 1995 1995 38 3 37 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_000382805.1 HMT-398 CECT 7746 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani CECT 7746 8 1981087 41.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/382/805/GCA_000382805.1_ASM38280v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_AC PRJEB1503 1297534 SAMEA2272693 ASM38280v1 Scaffold 2013-12-20T12:43:52.900 Spain:Valencia human tooth surface CSISP 93.71 99.83 0.2 99.99 0.07 GCF_000382805.1 CAUJ01 1916 1995 1995 38 3 37 1 Streptococcus_oralis_HMT_071_398_707 GCA_000382825.1 HMT-398 7747 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani 7747 6 1884389 41.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/382/825/GCA_000382825.1_ASM38282v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJEB1510 1297857 SAMEA2272194 ASM38282v1 Scaffold 2013-12-20T12:43:07.933 CSISP 91.85 99.87 0.2 99.98 0.1 GCF_000382825.1 CAUK01 1779 1849 1849 40 3 26 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_000382825.1 HMT-398 7747 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani 7747 6 1884389 41.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/382/825/GCA_000382825.1_ASM38282v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJEB1510 1297857 SAMEA2272194 ASM38282v1 Scaffold 2013-12-20T12:43:07.933 CSISP 91.85 99.87 0.2 99.98 0.1 GCF_000382825.1 CAUK01 1779 1849 1849 40 3 26 1 Streptococcus_oralis_HMT_071_398_707 GCA_000382965.1 HMT-550 ST228 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus ST228 2 2790688 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/382/965/GCA_000382965.1_ASM38296v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJEA71349 1074919 SAMEA2272458 ASM38296v1 Complete Genome 2013-12-20T12:43:30.466 Swiss Institute of Bioinformatics - Vital-IT group 98.96 99.51 0.08 100 0.17 GCF_000382965.1 2546 2744 2744 118 16 63 1 Staphylococcus_aureus_homd_HMT_550 GCA_000382985.1 HMT-550 ST228 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus ST228 2 2796742 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/382/985/GCA_000382985.1_ASM38298v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJEA71351 1074919 SAMEA2272299 ASM38298v1 Complete Genome 2013-12-20T12:43:17.813 Swiss Institute of Bioinformatics - Vital-IT group 98.98 99.51 0.08 100 0.68 GCF_000382985.1 2552 2749 2749 117 16 63 1 Staphylococcus_aureus_homd_HMT_550 GCA_000383005.1 HMT-550 ST228 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus ST228 2 2783086 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/383/005/GCA_000383005.1_ASM38300v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJEA71357 1074919 SAMEA2272502 ASM38300v1 Complete Genome 2013-12-20T12:43:34.016 Swiss Institute of Bioinformatics - Vital-IT group 98.96 99.51 0.08 100 0.18 GCF_000383005.1 2538 2737 2737 118 16 64 1 Staphylococcus_aureus_homd_HMT_550 GCA_000385435.1 HMT-001 m07a Named Cultivated Zoonotic Pathogen (Abundance: Scarce) HMT-001 Bartonella schoenbuchensis m07a 5 1680471 37.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/385/435/GCA_000385435.1_m07aNrPeIrM01 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Bartonella;s__Bartonella schoenbuchensis PRJNA73949 1094496 SAMN02472035 m07aNrPeIrM01 Scaffold MIRA v. 3.1.15; phrap v. 1.080812 2013-12-19T13:52:18.627 Sweden blood 454 GS-FLX Titanium; Illumina GAIIx Uppsala University 97.34 99.38 0 100 0.02 GCF_000385435.1 AGWC01 1487 1544 1544 8 6 42 1 Bartonella_schoenbuchensis_homd_HMT_001 GCA_000385925.1 HMT-578 AS 1.3089 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus AS 1.3089 1 2142100 42.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/385/925/GCA_000385925.1_ASM38592v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_B PRJNA192658 1302863 SAMN02603400 ASM38592v1 Complete Genome Newbler v. 3.0 2014-01-30T14:21:26.946 454 Institute of Microbiology, Chinese Academy of Sciences 28.0x 92.93 99.13 0 99.99 0.07 GCF_000385925.1 2109 2207 2207 35 12 50 1 Streptococcus_cristatus_homd_HMT_578 GCA_000392435.1 HMT-988 TM71 Named NVP Cultivated in coculture Taxonomic Reference (Abundance: Scarce) HMT-988 Saccharimonas aalborgensis TM71 1 1013781 48.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/392/435/GCA_000392435.1_ASM39243v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas aalborgensis PRJNA201542 1332188 SAMN02602963 ASM39243v1 Complete Genome CLC genomics workbench v. 5.1 2014-01-30T11:19:20.240 Illumina HiSeq2000 Aalborg University 890.0x 67.13 0.93 99.88 0.33 GCF_000392435.1 1048 1104 1104 7 3 46 0 GCA_000392875.1 HMT-604 ATCC 19433 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-604 Enterococcus faecalis ATCC 19433 3 2881400 37.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/392/875/GCA_000392875.1_Ente_faec_ATCC_19433_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis PRJNA157741 1169286 SAMN00847602 Ente_faec_ATCC_19433_V1 Scaffold allpaths v. R42411 2012-03-30T15:50:27.073 Illumina Broad Institute 144.0x 99.99 99.63 0 99.98 0.44 GCF_000392875.1 ASDA01 2753 2913 2913 75 21 63 1 Enterococcus_faecalis_homd_HMT_604 GCA_000400875.1 HMT-420 4_8 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis 4_8 2 2275461 27.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/400/875/GCA_000400875.1_ASM40087v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA32481 469607 SAMN02603674 ASM40087v1 Complete Genome Newbler v. 2.3-PostRelease-11/19/2009 2014-01-30T14:21:46.153 454 Broad Institute 41.0x 96.87 100 0 100 0.77 GCF_000400875.1 2138 2221 2221 21 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_000403725.2 HMT-030 GD7 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-030 Corynebacterium afermentans GD7 14 2259786 65.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/403/725/GCA_000403725.2_GD7 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium afermentans PRJEB646 1232427 SAMEA2272017 GD7 Scaffold 2013-12-20T12:42:47.946 Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France 27.0x 99.98 96.59 0 99.21 0.02 GCF_000403725.2 CAVS02 2122 2191 2191 8 5 55 1 Corynebacterium_afermentans_homd_HMT_030 GCA_000406805.1 HMT-439 Chl2 Unnamed Cultivated Oral (Abundance: Scarce) HMT-439 Anaerolineae [G1] bacterium HMT-439 Chl2 113 1160015 53.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/406/805/GCA_000406805.1_Chl2 Undefined PRJNA194442 1311575 SAMN02470748 Chl2 Contig Velvet v. 1.2.06; AllPaths v. LG r39750; Newbler v. 2.6 2013-12-19T13:25:10.643 Illumina; 454 Oak Ridge National Laboratory 30.0x GCF_000406805.1 APVJ01 1011 1040 1040 3 5 20 1 Anaerolineae__G1__bacterium_HMT_439_homd_HMT_439 GCA_000407005.1 HMT-802 ATCC 43076 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-802 Enterococcus saccharolyticus ATCC 43076 4 2638500 37.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/407/005/GCA_000407005.1_Ente_sacc_ATCC43076_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_F;s__Enterococcus_F saccharolyticus PRJNA82535 1139996 SAMN02596896 Ente_sacc_ATCC43076_V1 Scaffold allpaths v. R39980 2014-01-27T09:48:56.970 illumina Broad Institute 141.0x 99.99 99.34 0.66 100 0 GCF_000407005.1 AHYT01 2588 2729 2729 57 21 62 1 Enterococcus_saccharolyticus_homd_HMT_802 GCA_000407285.1 HMT-802 ATCC 43076 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-802 Enterococcus saccharolyticus ATCC 43076 2 2604038 37.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/407/285/GCA_000407285.1_Ente_sacc_ATCC43076_V2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_F;s__Enterococcus_F saccharolyticus PRJNA191890 1139996 SAMN02596896 Ente_sacc_ATCC43076_V2 Scaffold allpaths v. R41070 2014-01-27T09:48:56.970 Illumina; PacBio Broad Institute 287.0x 99.99 99.34 0.66 100 0 GCF_000407285.1 ASWN01 2586 2688 2688 57 6 38 1 Enterococcus_saccharolyticus_homd_HMT_802 GCA_000411115.1 HMT-325 ATCC 51502 Named Cultivated Oral (Abundance: Medium) HMT-325 Capnocytophaga granulosa ATCC 51502 20 2746278 41.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/411/115/GCA_000411115.1_Capn_gran_ATCC_51502_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga granulosa PRJNA41985 641143 SAMN02595375 Capn_gran_ATCC_51502_V1 Scaffold newbler v. rd454_mapasm_08172010 2014-01-23T10:15:18.770 454 Broad Institute 99.0x 99.99 100 0.5 99.54 0.14 GCF_000411115.1 ADDA01 2500 2560 2560 10 6 43 1 Capnocytophaga_granulosa_homd_HMT_325 GCA_000411235.1 HMT-047 HFH0082 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HFH0082 1 2493224 59.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/411/235/GCA_000411235.1_Cory_sp_HFH0082_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA72477 1078764 SAMN02596730 Cory_sp_HFH0082_V1 Scaffold allpaths v. R42721 2014-01-27T09:48:47.637 Illumina Broad Institute 144.0x 100 0 100 0.03 GCF_000411235.1 AGEM01 2118 2193 2193 14 7 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_000411455.1 HMT-186 F0373 Unnamed Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-186 Microbacterium sp. HMT-186 F0373 7 3168064 69.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/411/455/GCA_000411455.1_Micr_sp_oral_taxon_186_F0373_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium sp000411455 PRJNA169458 1203549 SAMN02596977 Micr_sp_oral_taxon_186_F0373_V Scaffold allpaths v. R44024 2014-01-27T09:49:01.737 Illumina Broad Institute 139.0x 99.49 0 99.99 0.3 GCF_000411455.1 ATCC01 3002 3096 3096 12 6 75 1 Microbacterium_sp_HMT_186_homd_HMT_186 GCA_000411535.1 HMT-524 HPA0037 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica HPA0037 3 2071607 39.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/411/535/GCA_000411535.1_Veil_sp_HPA0037_V1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA169494 1203593 SAMN02596981 Veil_sp_HPA0037_V1 Scaffold allpaths v. R42768 2014-01-27T09:49:01.993 Illumina Broad Institute 288.0x 100 0 100 0.05 GCF_000411535.1 ATCG01 1854 1930 1930 18 9 48 1 Veillonella_atypica_homd_HMT_524 GCA_000411555.1 HMT-199 F0494 Unnamed Cultivated Oral (Abundance: Scarce) HMT-199 Lancefieldella sp. HMT-199 F0494 2 1665560 51.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/411/555/GCA_000411555.1_Atop_sp_oral_taxon_199_F0494_V1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__Lancefieldella sp000411555 PRJNA170346 1203602 SAMN02596982 Atop_sp_oral_taxon_199_F0494_V Scaffold allpaths v. R44024 2014-01-27T09:49:02.047 Illumina Broad Institute 142.0x 100 0 99.63 0.05 GCF_000411555.1 ATCH01 1474 1539 1539 6 12 46 1 Lancefieldella_sp_HMT_199_homd_HMT_199 GCA_000411575.1 HMT-700 F0502 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea F0502 8 2788212 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/411/575/GCA_000411575.1_Capn_sp_oral_taxon_336_F0502_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA170347 1203603 SAMN02596983 Capn_sp_oral_taxon_336_F0502_V Scaffold allpaths v. R44024 2014-01-27T09:49:02.103 Illumina Broad Institute 130.0x 100 0 99.99 0.18 GCF_000411575.1 ATCI01 2332 2416 2416 7 24 52 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_000412775.1 HMT-550 CA-347 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus CA-347 2 2875156 32.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/412/775/GCA_000412775.1_ASM41277v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA197422 1323661 SAMN02603909 ASM41277v1 Complete Genome Celera Assembler v. 7.0; ABySS v. 1.3.5; PBJelly v. 12.6.4; Argus MapSolver v. 3.2.0 2014-01-30T14:54:06.587 Illumina; PacBio TGen North 97.49 99.51 0.13 100 0.91 GCF_000412775.1 2699 2882 2882 105 16 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000412995.1 HMT-029 F0403 Named Cultivated Oral (Abundance: Low) HMT-029 Treponema vincentii clade-029 F0403 3 2693493 45.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/412/995/GCA_000412995.1_Trep_vinc_F0403_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema vincentii PRJNA169493 1125702 SAMN02596984 Trep_vinc_F0403_V1 Scaffold allpaths v. R42721 2014-01-27T09:49:02.160 Illumina Broad Institute 142.0x 100 0.81 99.23 1.6 GCF_000412995.1 ATFC01 2435 2496 0 4 8 48 1 Treponema_vincentii_HMT_029_432 GCA_000412995.1 HMT-029 F0403 Named Cultivated Oral (Abundance: Low) HMT-029 Treponema vincentii clade-029 F0403 3 2693493 45.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/412/995/GCA_000412995.1_Trep_vinc_F0403_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema vincentii PRJNA169493 1125702 SAMN02596984 Trep_vinc_F0403_V1 Scaffold allpaths v. R42721 2014-01-27T09:49:02.160 Illumina Broad Institute 142.0x 100 0.81 99.23 1.6 GCF_000412995.1 ATFC01 2435 2496 0 4 8 48 1 Treponema_vincentii_clade_029_homd_HMT_029 GCA_000413015.1 HMT-440 ATCC 35535 Named Cultivated Oral (Abundance: Medium) HMT-440 Treponema socranskii subsp. paredis ATCC 35535 2 2742149 48.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/015/GCA_000413015.1_Trep_socr_subsp_paredis_ATCC_35535_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D paredis PRJNA169492 1125701 SAMN02596985 Trep_socr_subsp_paredis_ATCC_3 Scaffold allpaths v. R42721 2014-01-27T09:49:02.270 Illumina Broad Institute 281.0x 92.78 100 0 99.78 0.27 GCF_000413015.1 ATFD01 2423 2483 0 2 9 48 1 Treponema_socranskii_HMT_438_440_769 GCA_000413035.1 HMT-667 ATCC 700293 Named Cultivated Oral (Abundance: Medium) HMT-667 Treponema medium ATCC 700293 1 2727508 44.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/035/GCA_000413035.1_Trep_medi_ATCC_700293_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema medium PRJNA169490 1125700 SAMN02596986 Trep_medi_ATCC_700293_V1 Scaffold allpaths v. R42721 2014-01-27T09:49:02.323 Illumina Broad Institute 143.0x 99.98 100 0 99.41 1.59 GCF_000413035.1 ATFE01 2333 2395 2395 7 5 49 1 Treponema_medium_homd_HMT_667 GCA_000413055.1 HMT-664 ATCC 51939 Named Cultivated Oral (Abundance: Medium) HMT-664 Treponema maltophilum ATCC 51939 1 2530388 47.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/055/GCA_000413055.1_Trep_malt_ATCC_51939_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_C;s__Treponema_C maltophilum PRJNA169489 1125699 SAMN02596987 Trep_malt_ATCC_51939_V1 Scaffold allpaths v. R42721 2014-01-27T09:49:02.376 Illumina Broad Institute 143.0x 100 0 99.64 1.14 GCF_000413055.1 ATFF01 2284 2339 2339 2 6 46 1 GCA_000413075.1 HMT-584 SP44 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola SP44 8 2824736 38.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/075/GCA_000413075.1_Trep_dent_SP44_F0466_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64929 999439 SAMN02596781 Trep_dent_SP44__F0466_V1 Scaffold allpaths v. R42721 2014-01-27T09:48:51.120 Illumina Broad Institute 145.0x 96.94 100 0 99.92 0.06 GCF_000413075.1 AHAD01 2593 2652 2652 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000413095.1 HMT-584 SP32 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola SP32 6 2990277 38.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/095/GCA_000413095.1_Trep_dent_SP32_F0464_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola_A PRJNA64923 999436 SAMN02596780 Trep_dent_SP32__F0464_V1 Scaffold allpaths v. R42721 2014-01-27T09:48:51.073 Illumina Broad Institute 140.0x 94.22 100 0 99.97 0.41 GCF_000413095.1 AHAC01 2781 2840 2840 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000413115.1 HMT-584 SP23 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola SP23 3 2825999 38.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/115/GCA_000413115.1_Trep_dent_SP23_F0463_V1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA64921 999435 SAMN02596779 Trep_dent_SP23__F0463_V1 Scaffold allpaths v. R42721 2014-01-27T09:48:51.023 Illumina Broad Institute 142.0x 96.94 100 0 99.92 0.06 GCF_000413115.1 AHAB01 2607 2666 2666 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_000413315.1 HMT-192 F0372 Unnamed Cultivated Oral (Abundance: Scarce) HMT-192 Brooklawnia sp. HMT-192 F0372 2 2711056 61.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/315/GCA_000413315.1_Prop_sp_oral_taxon_192_F0372_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Brooklawnia;s__Brooklawnia sp000413315 PRJNA170349 1203605 SAMN02596989 Prop_sp_oral_taxon_192_F0372_V Scaffold allpaths v. R44024 2014-01-27T09:49:02.543 Illumina Broad Institute 142.0x 99.34 0.33 99.99 1.72 GCF_000413315.1 ATFL01 2512 2586 2586 14 12 47 1 Brooklawnia_sp_HMT_192_homd_HMT_192 GCA_000413335.1 HMT-552 HGH0353 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum HGH0353 2 2741290 63.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/335/GCA_000413335.1_Prop_sp_HGH0353_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA169460 1203571 SAMN02596990 Prop_sp_HGH0353_V1 Scaffold allpaths v. R43375 2014-01-27T09:49:02.590 Illumina Broad Institute 168.0x 99.78 0.66 99.98 0.35 GCF_000413335.1 ATFM01 2504 2588 2588 28 5 50 1 Cutibacterium_avidum_homd_HMT_552 GCA_000413355.1 HMT-705 HGA0225 Named Cultivated Oral (Abundance: Low) HMT-705 Hoylesella oralis HGA0225 7 2857367 44.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/355/GCA_000413355.1_Prev_oral_HGA0225_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella phocaeensis PRJNA169459 1203550 SAMN02596991 Prev_oral_HGA0225_V1 Scaffold allpaths v. R42768 2014-01-27T09:49:02.633 Illumina Broad Institute 279.0x 99.87 99.29 0.36 99.16 0 GCF_000413355.1 ATFN01 2348 2421 2421 7 9 56 1 Hoylesella_oralis_homd_HMT_705 GCA_000413375.1 HMT-354 HFH0086 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis HFH0086 1 2377736 63.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/375/GCA_000413375.1_Derm_sp_HFH0086_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA169448 1203568 SAMN02596992 Derm_sp_HFH0086_V1 Scaffold allpaths v. R42768 2014-01-27T09:49:02.683 Illumina Broad Institute 139.0x 94.15 0.15 100 0.05 GCF_000413375.1 ATFO01 2133 2197 2197 6 9 48 1 Dermabacter_hominis_homd_HMT_354 GCA_000413395.1 HMT-969 CC31F Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-969 Bacteroides stercoris CC31F 10 4102660 46.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/395/GCA_000413395.1_Bact_ster_CC31F_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris PRJNA71531 1073351 SAMN02596993 Bact_ster_CC31F_V1 Scaffold allpaths v. R45561 2014-01-27T09:49:02.730 Illumina Broad Institute 39.0x 98.88 99.26 0.5 99.92 0.59 GCF_000413395.1 ATFP01 3473 3547 3547 15 3 56 0 Bacteroides_stercoris_homd_HMT_969 GCA_000413475.1 HMT-644 ATCC 27335 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius ATCC 27335 10 1951449 37.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/475/GCA_000413475.1_Stre_inte_ATCC_27335_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA197004 1095731 SAMN02596988 Stre_inte_ATCC_27335_V1 Contig allpaths v. R44024 2014-01-27T09:49:02.443 Illumina Broad Institute 143.0x 99.99 100 0 100 0.22 GCF_000413475.1 ATFK01 1869 1976 1976 32 12 62 1 Streptococcus_intermedius_homd_HMT_644 GCA_000418345.1 HMT-550 Bmb9393 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus Bmb9393 2 2983456 32.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/418/345/GCA_000418345.1_ASM41834v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA196937 1280 SAMN02603524 ASM41834v1 Complete Genome Newbler v. 2.5.3; Celera software v.7 2014-01-30T14:21:36.850 Brazil: Rio de Janeiro 454 GS FLX Titanium LNCC 25.0x 99.47 99.51 0.08 100 0.52 GCF_000418345.1 2808 3009 3009 121 16 63 1 Staphylococcus_aureus_homd_HMT_550 GCA_000418475.1 HMT-749 LOCK900 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-749 Lacticaseibacillus rhamnosus LOCK900 1 2883376 46.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/418/475/GCA_000418475.1_ASM41847v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus PRJNA196481 1316933 SAMN02603328 ASM41847v1 Complete Genome Newbler De Novo Assembler v. 2.6 2014-01-30T11:19:49.553 Sanger dideoxy sequencing; 454; Illumina IBB PAS 81.0x 97.7 99.46 0 99.97 0.07 GCF_000418475.1 2650 2759 2759 34 15 59 1 Lacticaseibacillus_rhamnosus_homd_HMT_749 GCA_000420105.1 HMT-704 ATCC 23714 Named Cultivated Oral (Abundance: Scarce) HMT-704 Metamycoplasma orale ATCC 23714 21 710549 25.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/420/105/GCA_000420105.1_ASM42010v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma orale PRJNA183029 1266996 SAMN02441597 ASM42010v1 Contig Unknown program v. before 2013-04-01 2013-12-11T13:21:07.700 Illumina HiSeq 2000 DOE Joint Genome Institute 99.97 99.25 0 93.33 0.01 GCF_000420105.1 ATUH01 1211 1251 1251 3 3 33 1 GCA_000420505.1 HMT-198 DSM 21503 Named Cultivated Oral (Abundance: Scarce) HMT-198 Alloscardovia omnicolens DSM 21503 43 1847146 46.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/420/505/GCA_000420505.1_ASM42050v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia;s__Alloscardovia omnicolens PRJNA185547 1120979 SAMN02441248 ASM42050v1 Contig Unknown program v. before 2013-04-02 2013-12-11T13:14:25.826 Sweden Illumina HiSeq 2000 DOE Joint Genome Institute 100 0 98.28 0.13 GCF_000420505.1 ATVB01 1554 1613 1613 9 3 46 1 Alloscardovia_omnicolens_homd_HMT_198 GCA_000420605.1 HMT-333 DSM 45435 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-333 Corynebacterium massiliense DSM 45435 26 2183019 65.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/420/605/GCA_000420605.1_ASM42060v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium massiliense PRJNA185571 1121364 SAMN02441587 ASM42060v1 Scaffold Unknown program v. before 2013-04-10 2013-12-11T13:21:07.040 France Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 97.53 0 99.98 0.05 GCF_000420605.1 ATVG01 1959 2024 2024 6 5 53 1 Corynebacterium_massiliense_homd_HMT_333 GCA_000421205.1 HMT-291 DSM 20614 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola DSM 20614 57 3056806 50.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/421/205/GCA_000421205.1_ASM42120v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA195802 1122982 SAMN02440901 ASM42120v1 Scaffold Unknown program v. before 2013-05-22 2013-12-11T13:13:58.723 Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 99.21 0 99.98 0.83 GCF_000421205.1 ATWK01 2489 2548 2548 8 3 47 1 Prevotella_denticola_homd_HMT_291 GCA_000421785.1 HMT-745 DSM 20565 Named Cultivated Pathogen (Abundance: Scarce) HMT-745 Streptococcus pyogenes DSM 20565 31 1858737 38.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/421/785/GCA_000421785.1_ASM42178v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes PRJNA188899 1123316 SAMN02440590 ASM42178v1 Contig Unknown program v. before 2013-04-04 2013-12-11T13:07:30.260 Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 100 0 99.99 0.53 GCF_000421785.1 ATXR01 1833 1919 1919 50 5 30 1 Streptococcus_pyogenes_homd_HMT_745 GCA_000422605.1 HMT-569 DSM 20559 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-569 Eggerthia catenaformis DSM 20559 37 1921006 32.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/422/605/GCA_000422605.1_ASM42260v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Eggerthia;s__Eggerthia catenaformis PRJNA185584 999415 SAMN02440847 ASM42260v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. r42328 2013-12-11T13:07:49.670 Illumina HiSeq 2000 DOE Joint Genome Institute 99.07 99.06 9.91 100 5.52 GCF_000422605.1 AUGJ01 1861 1931 1931 26 3 40 1 Eggerthia_catenaformis_homd_HMT_569 GCA_000425005.1 HMT-678 DSM 22971 Named Cultivated Oral (Abundance: Medium) HMT-678 Solobacterium moorei DSM 22971 169 2335946 37.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/425/005/GCA_000425005.1_ASM42500v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia;s__Bulleidia moorei PRJNA188328 1123263 SAMN02441153 ASM42500v1 Scaffold Unknown program v. before 2013-05-01 2013-12-11T13:14:19.443 Japan Illumina HiSeq 2000 DOE Joint Genome Institute 99.98 100 0 97.32 0.56 GCF_000425005.1 AUKY01 2264 2353 2353 43 3 42 1 Solobacterium_moorei_homd_HMT_678 GCA_000425825.1 HMT-243 DSM 19772 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-243 Jeotgalicoccus marinus DSM 19772 26 2109822 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/425/825/GCA_000425825.1_ASM42582v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus;s__Jeotgalicoccus marinus PRJNA188917 1122128 SAMN02441531 ASM42582v1 Scaffold Unknown program v. before 2013-03-26 2013-12-11T13:21:03.286 China Illumina HiSeq 2000 DOE Joint Genome Institute 98.85 1.15 99.81 1.24 GCF_000425825.1 AUEE01 2187 2270 2270 28 5 49 1 Jeotgalicoccus_marinus_homd_HMT_243 GCA_000426405.1 HMT-890 DSM 20096 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-890 Bifidobacterium subtile DSM 20096 32 2765266 60.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/426/405/GCA_000426405.1_ASM42640v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium subtile PRJNA195781 1121110 SAMN02440843 ASM42640v1 Contig Unknown program v. before 2013-05-13 2013-12-11T13:07:49.390 Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 99.44 3.48 98.91 1.2 GCF_000426405.1 AUFH01 2254 2322 2322 17 2 48 1 Bifidobacterium_subtile_homd_HMT_890 GCA_000426585.1 HMT-553 DSM 16972 Named Cultivated Oral (Abundance: Medium) HMT-553 Segatella baroniae DSM 16972 47 3128717 53.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/426/585/GCA_000426585.1_ASM42658v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella baroniae PRJNA195801 1122980 SAMN02440845 ASM42658v1 Scaffold Unknown program v. before 2013-05-22 2013-12-11T13:07:49.533 United Kingdom Illumina HiSeq 2000 DOE Joint Genome Institute 99.95 99.32 0.51 99.21 0.11 GCF_000426585.1 AUFQ01 2494 2555 2555 6 7 47 1 Segatella_baroniae_homd_HMT_553 GCA_000426605.1 HMT-191 DSM 21887 Named Cultivated Oral (Abundance: Scarce) HMT-191 Propionibacterium acidifaciens DSM 21887 85 3043901 70.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/426/605/GCA_000426605.1_ASM42660v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionibacterium;s__Propionibacterium acidifaciens PRJNA195803 1122994 SAMN02441526 ASM42660v1 Scaffold Unknown program v. before 2013-05-13 2013-12-11T13:21:02.893 United Kingdom Illumina HiSeq 2000 DOE Joint Genome Institute 98.46 0.33 100 0.52 GCF_000426605.1 AUFR01 2554 2630 2630 23 4 48 1 Propionibacterium_acidifaciens_homd_HMT_191 GCA_000426665.1 HMT-124 DSM 19719 Named Cultivated Oral (Abundance: Low) HMT-124 Selenomonas artemidis DSM 19719 35 2350599 56.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/426/665/GCA_000426665.1_ASM42666v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda artemidis PRJNA195808 1123249 SAMN02440643 ASM42666v1 Scaffold Unknown program v. before 2013-05-24 2013-12-11T13:07:34.823 Illumina HiSeq 2000 DOE Joint Genome Institute 99.65 0.05 99.86 0.3 GCF_000426665.1 AUFU01 2183 2255 2255 17 3 51 1 Selenomonas_artemidis_homd_HMT_124 GCA_000428105.1 HMT-787 DSM 20611 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-787 Bacteroides pyogenes DSM 20611 73 3427038 45.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/428/105/GCA_000428105.1_ASM42810v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes PRJNA174175 1121100 SAMN02441225 ASM42810v1 Scaffold Unknown program v. before 2013-04-23 2013-12-11T13:14:24.250 Illumina HiSeq 2000 DOE Joint Genome Institute 99.96 99.25 0 99.97 0.03 GCF_000428105.1 ATZH01 2814 2897 2897 14 7 61 1 Bacteroides_pyogenes_homd_HMT_787 GCA_000428965.1 HMT-224 DSM 21651 Named Cultivated Oral (Abundance: Medium) HMT-224 Leptotrichia hofstadii DSM 21651 18 2560738 30.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/428/965/GCA_000428965.1_ASM42896v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia hofstadii PRJNA185361 1122171 SAMN02440610 ASM42896v1 Scaffold Unknown program v. before 2013-04-25 2013-12-11T13:07:31.963 Norway Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 100 2.27 99.99 0.21 GCF_000428965.1 AUAY01 2407 2470 2470 17 2 43 1 Leptotrichia_hofstadii_homd_HMT_224 GCA_000429225.1 HMT-888 DSM 19115 Named Cultivated Oral (Abundance: High) HMT-888 Actinomyces dentalis DSM 19115 91 3531393 73.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/429/225/GCA_000429225.1_ASM42922v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces dentalis PRJNA185529 1120941 SAMN02440612 ASM42922v1 Scaffold Unknown program v. before 2013-04-02 2013-12-11T13:07:32.153 United Kingdom Illumina HiSeq 2000 DOE Joint Genome Institute 99.53 2.25 100 1.45 GCF_000429225.1 AUBL01 2841 2917 2917 14 3 58 1 Actinomyces_dentalis_homd_HMT_888 GCA_000429245.1 HMT-617 DSM 6843 Named Cultivated Oral (Abundance: Medium) HMT-617 Schaalia georgiae DSM 6843 23 2498023 69.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/429/245/GCA_000429245.1_ASM42924v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia georgiae PRJNA185530 1120942 SAMN02441198 ASM42924v1 Scaffold Unknown program v. before 2013-03-11 2013-12-11T13:14:22.246 USA Illumina HiSeq 2000 DOE Joint Genome Institute 100 0.47 99.99 0.09 GCF_000429245.1 AUBM01 2081 2143 2143 7 3 51 1 GCA_000429265.1 HMT-618 DSM 6844 Named Cultivated Oral (Abundance: Medium) HMT-618 Actinomyces gerencseriae DSM 6844 28 3420019 70.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/429/265/GCA_000429265.1_ASM42926v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces gerencseriae PRJNA185531 1120943 SAMN02441199 ASM42926v1 Scaffold Unknown program v. before 2013-04-09 2013-12-11T13:14:22.333 USA Illumina HiSeq 2000 DOE Joint Genome Institute 100 0.71 99.99 1.1 GCF_000429265.1 AUBN01 2815 2892 2892 18 4 54 1 Actinomyces_gerencseriae_homd_HMT_618 GCA_000430565.1 HMT-798 DSM 22865 Named Cultivated Vaginal (Abundance: Medium) HMT-798 Prevotella timonensis DSM 22865 124 3156061 42.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/430/565/GCA_000430565.1_ASM43056v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella timonensis PRJNA188813 1122992 SAMN02440805 ASM43056v1 Scaffold Unknown program v. before 2013-04-04 2013-12-11T13:07:46.380 France Illumina HiSeq 2000 DOE Joint Genome Institute 99.97 99.11 0 99.96 0.1 GCF_000430565.1 AUMG01 2663 2736 2736 27 1 44 1 Prevotella_timonensis_homd_HMT_798 GCA_000431415.1 HMT-542 na Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius na 90 1900981 36.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/431/415/GCA_000431415.1_MGS621 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJEB962 1263100 SAMEA3138458 MGS621 Scaffold 2014-11-21T08:58:48.000 derived from human gut metagenome DTU 32.0x 99.12 100 0 98.05 0.03 GCF_000431415.1 CAYH01 1721 1758 1758 29 0 7 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_000433275.1 HMT-118 na Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus na 45 1773580 45.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/433/275/GCA_000433275.1_MGS218 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJEB764 1263072 SAMEA3138551 MGS218 Scaffold 2014-11-21T08:58:53.300 derived from human gut metagenome DTU 39.0x 97.76 96.1 0.63 99.75 1.22 GCF_000433275.1 CBAF01 1704 1804 1804 58 1 40 1 Dialister_invisus_homd_HMT_118 GCA_000433695.1 HMT-420 na Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis na 172 2159799 26.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/433/695/GCA_000433695.1_MGS649 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJEB972 1262900 SAMEA3138572 MGS649 Scaffold 2014-11-21T08:58:54.263 derived from human gut metagenome DTU 81.0x 98.86 0.57 99.99 0.07 GCF_000433695.1 CBBC01 2121 2157 2157 18 0 17 1 Fusobacterium_animalis_homd_HMT_420 GCA_000438335.1 HMT-736 na Named Cultivated Oral (Abundance: Medium) HMT-736 Dialister pneumosintes na 70 1245617 35.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/438/335/GCA_000438335.1_MGS588 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Allisonella;s__Allisonella pneumosinta PRJEB946 1262871 SAMEA3138801 MGS588 Scaffold 2014-11-21T08:59:07.530 derived from human gut metagenome DTU 14.0x 94.09 0 90.17 1.36 GCF_000438335.1 CBKO01 1204 1257 1257 16 0 36 1 Dialister_pneumosintes_homd_HMT_736 GCA_000438685.2 HMT-825 N1-011A Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-825 Listeria monocytogenes N1-011A 2 3243301 37.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/438/685/GCA_000438685.2_ASM43868v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes_B PRJNA203445 1639 SAMN02203128 ASM43868v2 Complete Genome HGAP v. 1.4 2013-06-13T11:17:57.730 USA Environment PacBio RS University of California at Davis 100.0x 99.51 99.45 0 100 0.52 GCF_000438685.2 3219 3451 3451 146 18 67 1 Listeria_monocytogenes_homd_HMT_825 GCA_000439045.1 HMT-768 ATCC 33478 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus ATCC 33478 54 2133594 43.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/439/045/GCA_000439045.1_ASM43904v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA185220 1123317 SAMN02440709 ASM43904v1 Contig Unknown program v. before 2013-05-28 2013-12-11T13:07:39.693 Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 98.88 0 99.99 0.13 GCF_000439045.1 AUUD01 1991 2063 2063 35 3 33 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000439065.1 HMT-643 DSM 20706 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia DSM 20706 21 2564533 43.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/439/065/GCA_000439065.1_ASM43906v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA185645 1122984 SAMN02440707 ASM43906v1 Scaffold Unknown program v. before 2013-03-11 2013-12-11T13:07:39.556 Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 99.32 0 99.93 0.04 GCF_000439065.1 AUTZ01 2172 2230 2230 11 2 44 1 Prevotella_intermedia_homd_HMT_643 GCA_000442105.1 HMT-272 F0290 Named Cultivated Oral (Abundance: Scarce) HMT-272 Phocaeicola abscessus F0290 30 2502741 47.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/442/105/GCA_000442105.1_BactbactF0290v01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola abscessus PRJNA53013 888054 SAMN02436397 BactbactF0290v01 Contig Celera Assembler v. 6.1 2013-12-04T14:28:21.297 Illumina Baylor College of Medicine 31.0x 96.28 0.37 91.22 0 GCF_000442105.1 AUTU01 2086 2142 2142 8 1 46 1 Phocaeicola_abscessus_homd_HMT_272 GCA_000442155.1 HMT-071 2425 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 2425 15 1871835 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/442/155/GCA_000442155.1_2425.1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA202967 1333864 SAMN02469816 2425.1 Contig Edena v. 3.130110 2013-12-19T13:09:35.603 Switzerland prosthetic joint infection Illumina MiSeq Geneva University Hospitals, Genomic Research Laboratory 120.0x 92.9 99.87 0.24 99.99 0.06 GCF_000442155.1 ASWZ01 1822 1914 1914 41 4 46 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000442155.1 HMT-071 2425 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 2425 15 1871835 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/442/155/GCA_000442155.1_2425.1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA202967 1333864 SAMN02469816 2425.1 Contig Edena v. 3.130110 2013-12-19T13:09:35.603 Switzerland prosthetic joint infection Illumina MiSeq Geneva University Hospitals, Genomic Research Laboratory 120.0x 92.9 99.87 0.24 99.99 0.06 GCF_000442155.1 ASWZ01 1822 1914 1914 41 4 46 1 Streptococcus_oralis_HMT_071_398_707 GCA_000442175.1 HMT-071 2426 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 2426 25 1882877 40.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/442/175/GCA_000442175.1_2426.1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA202968 1333865 SAMN02469815 2426.1 Contig Edena v. 3.130110 2013-12-19T13:09:35.536 Switzerland prosthetic joint infection Illumina MiSeq Geneva University Hospitals, Genomic Research Laboratory 80.0x 92.9 99.87 0.24 99.99 0.05 GCF_000442175.1 ASXA01 1834 1929 1929 42 5 47 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000442175.1 HMT-071 2426 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 2426 25 1882877 40.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/442/175/GCA_000442175.1_2426.1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA202968 1333865 SAMN02469815 2426.1 Contig Edena v. 3.130110 2013-12-19T13:09:35.536 Switzerland prosthetic joint infection Illumina MiSeq Geneva University Hospitals, Genomic Research Laboratory 80.0x 92.9 99.87 0.24 99.99 0.05 GCF_000442175.1 ASXA01 1834 1929 1929 42 5 47 1 Streptococcus_oralis_HMT_071_398_707 GCA_000444425.1 HMT-676 BB2000 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-676 Proteus mirabilis BB2000 1 3846754 38.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/444/425/GCA_000444425.1_ASM44442v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus;s__Proteus mirabilis PRJNA183065 1266738 SAMN02603303 ASM44442v1 Complete Genome Galaxy v. May 2012 2014-01-30T11:19:47.990 USA: Maryland Sanger dideoxy sequencing; 454; Illumina Harvard University 98.9 100 0 100 0.33 GCF_000444425.1 3396 3571 3571 68 24 82 1 Proteus_mirabilis_homd_HMT_676 GCA_000448565.1 HMT-411 HSISM1 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis HSISM1 1 2334592 44.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/448/565/GCA_000448565.1_HSISM1_1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000448565 PRJNA196120 1316408 SAMN02471220 HSISM1_1.0 Chromosome Celera Assembler v. 6.1; SSPACE v. 1.1 2013-12-19T13:34:52.713 Netherlands ileostomy effluent evening sample obtained from a 79 year-old male ileostomist p 454; Illumina HiSeq Top Institute Food and Nutrition (TIFN) 472.0x 97.8 0.29 95.65 0.34 GCF_000448565.1 ASKI01 2228 2309 2309 33 2 45 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_000448685.2 HMT-755 HSISS4 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius HSISS4 1 2100988 40.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/448/685/GCA_000448685.2_ASM44868v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA196127 1304 SAMN02471219 ASM44868v2 Complete Genome ABySS v. 1.5.1. 2013-12-19T13:34:52.666 Netherlands ileostomy effluent evening sample obtained from a 79 year-old male ileostomist p Illumina HiSeq; PacBio Top Institute Food and Nutrition (TIFN) 144.0x 96.06 99.68 1.02 99.98 0.07 GCF_000448685.2 1876 1999 1999 36 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_000448705.1 HMT-161 HSIVP1 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula HSIVP1 1 2177985 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/448/705/GCA_000448705.1_HSIVP1_1.0 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA196131 1316254 SAMN02471223 HSIVP1_1.0 Chromosome Celera Assembler v. 6.1; SSPACE v. 1.1 2013-12-19T13:34:52.873 Netherlands ileostomy effluent evening sample obtained from a 79 year-old male ileostomist p 454; Illumina HiSeq Top Institute Food and Nutrition (TIFN) 476.0x 96.47 99.4 0 99.96 0.25 GCF_000448705.1 ASKE01 2036 2110 2110 20 5 48 1 Veillonella_parvula_homd_HMT_161 GCA_000452385.2 HMT-550 Tager 104 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus Tager 104 1 2820837 32.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/452/385/GCA_000452385.2_ASM45238v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA213989 1381115 SAMN02393830 ASM45238v2 Complete Genome CLC Bio v. 7.0; SSPACE v. 2.0; SMRT Analysis v. 2.0 2013-11-05T16:40:31.876 USA cutaneous abscess Illumina; Pacific Biosciences Auburn University 98.6 99.51 0.78 100 1.07 GCF_000452385.2 2658 2865 2865 124 23 59 1 Staphylococcus_aureus_homd_HMT_550 GCA_000455445.1 HMT-798 4401737 Named Cultivated Vaginal (Abundance: Medium) HMT-798 Prevotella timonensis 4401737 25 3217068 44.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/455/445/GCA_000455445.1_4401737 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella timonensis PRJEB81 1122992 SAMEA2272439 4401737 Scaffold 2013-12-20T12:43:28.750 ebi 68.0x 99.97 99.29 0 99.97 0.1 GCF_000455445.1 CBQQ01 2676 2754 2754 29 4 44 1 Prevotella_timonensis_homd_HMT_798 GCA_000455865.1 HMT-953 ChDC F145 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii ChDC F145 164 2280257 26.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/455/865/GCA_000455865.1_ASM45586v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA193582 1307441 SAMN02469579 ASM45586v1 Contig SOAPdenovo v. 1.05 2013-12-19T13:01:17.100 subgingival plaque of oral cavity Illumina HiSeq Dental School of Chosun University 1848.0x 97.64 98.88 0.37 100 0.14 GCF_000455865.1 ATKE01 2097 2153 2153 20 2 33 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_000455885.1 HMT-953 ChDC F174 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii ChDC F174 118 2465770 26.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/455/885/GCA_000455885.1_ASM45588v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA193583 1307442 SAMN02469580 ASM45588v1 Contig SOAPdenovo v. 1.05 2013-12-19T13:01:17.153 subgingival plaque of oral cavity Illumina HiSeq Dental School of Chosun University 1938.0x 97.91 100 0 100 0.35 GCF_000455885.1 ATKF01 2278 2326 2326 18 1 28 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_000455905.1 HMT-953 ChDC F206 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii ChDC F206 173 2362473 27.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/455/905/GCA_000455905.1_ASM45590v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA193584 1307443 SAMN02469581 ASM45590v1 Contig SOAPdenovo v. 1.05 2013-12-19T13:01:17.207 subgingival plaque of oral cavity Illumina HiSeq Dental School of Chosun University 1879.0x 97.77 100 0 99.99 0.08 GCF_000455905.1 ATKH01 2253 2304 2304 21 0 29 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_000455925.1 HMT-953 ChDC F300 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii ChDC F300 148 2441149 26.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/455/925/GCA_000455925.1_ASM45592v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA193585 1307444 SAMN02469577 ASM45592v1 Contig SOAPdenovo v. 1.05 2013-12-19T13:01:16.993 subgingival plaque of oral cavity Illumina HiSeq Dental School of Chosun University 1676.0x 97.71 98.88 1.12 100 0.39 GCF_000455925.1 ATKG01 2374 2426 2426 19 2 30 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_000455945.1 HMT-698 ChDC F316 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto ChDC F316 83 2162122 26.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/455/945/GCA_000455945.1_ASM45594v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA193580 1307428 SAMN02469582 ASM45594v1 Contig SOAPdenovo v. 1.05 2013-12-19T13:01:17.260 subgingival plaque of oral cavity Illumina HiSeq Dental School of Chosun University 1433.0x 98.88 100 0 100 0.13 GCF_000455945.1 ATKC01 2054 2106 2106 18 0 33 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_000455965.1 HMT-200 ChDC F8 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii ChDC F8 186 1989265 26.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/455/965/GCA_000455965.1_ASM45596v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA193577 1307427 SAMN02469575 ASM45596v1 Contig SOAPdenovo v. 1.05 2013-12-19T13:01:16.830 subgingival plaque of oral cavity Illumina HiSeq Dental School of Chosun University 2360.0x 97.47 98.88 0.37 99.93 0.05 GCF_000455965.1 ATKB01 1790 1840 1840 20 0 29 1 Fusobacterium_vincentii_homd_HMT_200 GCA_000455985.1 HMT-420 ChDC F324 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis ChDC F324 123 2265718 26.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/455/985/GCA_000455985.1_ASM45598v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA193581 1307429 SAMN02469583 ASM45598v1 Contig SOAPdenovo v. 1.05 2013-12-19T13:01:17.320 oral cavity Illumina HiSeq Dental School of Chosun University 1995.0x 96.91 100 0 100 0.21 GCF_000455985.1 ATKD01 2151 2207 2207 19 0 36 1 Fusobacterium_animalis_homd_HMT_420 GCA_000462955.1 HMT-550 6850 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 6850 1 2736560 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/462/955/GCA_000462955.1_ASM46295v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA216988 1392476 SAMN02604264 ASM46295v1 Complete Genome Newbler v. 2.0.00.20 FLX 2014-01-30T15:13:21.470 454 GS-FLX; Sanger University of Wuerzburg 98.7 98.95 0.22 100 0.1 GCF_000462955.1 2521 2715 2715 119 16 58 1 Staphylococcus_aureus_homd_HMT_550 GCA_000463015.1 HMT-717 B4 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-717 Variovorax paradoxus B4 2 7148516 67.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/015/GCA_000463015.1_ASM46301v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax;s__Variovorax paradoxus_E PRJNA178088 1246301 SAMN02603275 ASM46301v1 Complete Genome Roche Newbler v. 2.3 2014-01-30T11:19:45.983 Sanger dideoxy sequencing; 454 Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory 93.65 100 0 100 1.03 GCF_000463015.1 6688 6790 6790 38 6 57 1 Variovorax_paradoxus_homd_HMT_717 GCA_000463055.1 HMT-550 CN1 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus CN1 3 2757070 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/055/GCA_000463055.1_ASM46305v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA162343 1193576 SAMN02603420 ASM46305v1 Complete Genome 2014-01-30T14:21:28.577 Integrated Genomics 98.95 99.51 0.08 100 0.13 GCF_000463055.1 2526 2713 2713 114 15 57 1 Staphylococcus_aureus_homd_HMT_550 GCA_000463355.1 HMT-644 B196 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius B196 1 1996214 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/355/GCA_000463355.1_ASM46335v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA50415 862967 SAMN02603659 ASM46335v1 Complete Genome 2014-01-30T14:21:45.300 National Microbiology Laboratory, Public Health Agency of Canada 98.37 99.88 0 100 0.27 GCF_000463355.1 1884 1994 1994 36 12 61 1 Streptococcus_intermedius_homd_HMT_644 GCA_000463385.1 HMT-644 C270 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius C270 1 1960728 37.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/385/GCA_000463385.1_ASM46338v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA50413 862966 SAMN02603658 ASM46338v1 Complete Genome 2014-01-30T14:21:45.250 National Microbiology Laboratory, Public Health Agency of Canada 98.4 99.88 0.07 99.99 0.25 GCF_000463385.1 1842 1953 1953 37 12 61 1 Streptococcus_intermedius_homd_HMT_644 GCA_000463395.1 HMT-576 C232 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus C232 1 1935414 38.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/395/GCA_000463395.1_ASM46339v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA42135 696216 SAMN02603657 ASM46339v1 Complete Genome 2014-01-30T14:21:45.190 National Microbiology Laboratory, Public Health Agency of Canada 99.97 98.91 0 99.96 0.39 GCF_000463395.1 1932 2042 2042 37 12 60 1 Streptococcus_constellatus_homd_HMT_576 GCA_000463425.1 HMT-576 C1050 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus C1050 1 1991156 38.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/425/GCA_000463425.1_ASM46342v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA50421 862969 SAMN02603661 ASM46342v1 Complete Genome 2014-01-30T14:21:45.403 National Microbiology Laboratory, Public Health Agency of Canada 99.97 99.26 0.35 99.98 1.72 GCF_000463425.1 1981 2094 2094 40 12 60 1 Streptococcus_constellatus_homd_HMT_576 GCA_000463445.1 HMT-576 C818 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus C818 1 1935662 38.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/445/GCA_000463445.1_ASM46344v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA50419 862968 SAMN02603660 ASM46344v1 Complete Genome 2014-01-30T14:21:45.350 National Microbiology Laboratory, Public Health Agency of Canada 99.97 98.91 0 99.97 0.3 GCF_000463445.1 1931 2041 2041 37 12 60 1 Streptococcus_constellatus_homd_HMT_576 GCA_000463465.1 HMT-543 C1051 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus C1051 1 1911706 38.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/465/GCA_000463465.1_ASM46346v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA50423 862970 SAMN02603662 ASM46346v1 Complete Genome 2014-01-30T14:21:45.457 National Microbiology Laboratory, Public Health Agency of Canada 95.71 100 0 99.99 0.22 GCF_000463465.1 1849 1955 1955 35 12 58 1 Streptococcus_anginosus_homd_HMT_543 GCA_000463505.1 HMT-543 C238 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus C238 1 2233640 38.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/505/GCA_000463505.1_ASM46350v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus whileyi PRJNA50425 862971 SAMN02603663 ASM46350v1 Complete Genome 2014-01-30T14:21:45.510 National Microbiology Laboratory, Public Health Agency of Canada 99.58 99.29 0.47 99.95 0.49 GCF_000463505.1 2190 2313 2313 52 12 58 1 Streptococcus_anginosus_homd_HMT_543 GCA_000463895.2 HMT-986 JGI 0001002-L20 Phylotype Uncultivated Taxonomic Reference (Abundance: Scarce) HMT-986 Saccharimonadota [C1 O1 F1 G1] bacterium HMT-986 JGI 0001002-L20 68 752653 46.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/895/GCA_000463895.2_ASM46389v2 Undefined PRJNA176055 1094954 SAMN02440694 ASM46389v2 Contig Velvet v. 1.1.04; ALLPATHS v. R37654 2013-12-11T13:07:38.883 Illumina HiSeq 2000 DOE Joint Genome Institute GCF_000463895.1 AUNW02 825 0 0 5 3 31 0 Saccharimonadales__F2_G1_HMT_986_989 GCA_000464455.1 HMT-769 VPI DR56BR1116 Named Cultivated Oral (Abundance: Medium) HMT-769 Treponema socranskii subsp. socranskii VPI DR56BR1116 74 2804628 49.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/464/455/GCA_000464455.1_TrepsocrDR56BR1116v1.0 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D socranskii PRJNA78911 1125725 SAMN00792340 TrepsocrDR56BR1116v1.0 Contig Celera Assembler v. 6.1 2012-02-24T11:44:02.657 Illumina J. Craig Venter Institute 32.0x 99.97 99.3 0 99.3 0.44 GCF_000464455.1 AUZJ01 2484 2537 0 3 3 46 1 Treponema_socranskii_subsp_socranskii_homd_HMT_769 GCA_000464455.1 HMT-769 VPI DR56BR1116 Named Cultivated Oral (Abundance: Medium) HMT-769 Treponema socranskii subsp. socranskii VPI DR56BR1116 74 2804628 49.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/464/455/GCA_000464455.1_TrepsocrDR56BR1116v1.0 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D socranskii PRJNA78911 1125725 SAMN00792340 TrepsocrDR56BR1116v1.0 Contig Celera Assembler v. 6.1 2012-02-24T11:44:02.657 Illumina J. Craig Venter Institute 32.0x 99.97 99.3 0 99.3 0.44 GCF_000464455.1 AUZJ01 2484 2537 0 3 3 46 1 Treponema_socranskii_HMT_438_440_769 GCA_000464495.1 HMT-114 TM11 Named Cultivated Skin (Abundance: High) HMT-114 Cutibacterium granulosum TM11 98 2140355 64.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/464/495/GCA_000464495.1_TM11_assembly2012 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium granulosum PRJNA189037 1292373 SAMN02393704 TM11_assembly2012 Contig Newbler v. Feb-2013 2013-11-05T14:39:45.776 prostate, prostatectomy specimen Illumina HiSeq Aarhus University 92.0x 98.88 98.46 0 98.99 0.49 GCF_000464495.1 AOST01 1797 1866 1866 18 3 47 1 Cutibacterium_granulosum_homd_HMT_114 GCA_000465255.1 HMT-641 KR494 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae KR494 1 1856176 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/465/255/GCA_000465255.1_ASM46525v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJNA203127 1334187 SAMN02603575 ASM46525v1 Complete Genome SOAPdenovo v. 1.05 2014-01-30T14:21:40.007 Illumina Lund University 400.0x 95.44 99.66 1.44 100 0.85 GCF_000465255.1 1736 1845 1845 30 20 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_000466165.1 HMT-183 F0552 Unnamed Cultivated Oral (Abundance: Medium) HMT-183 Peptidiphaga sp. HMT-183 F0552 73 2366015 67.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/165/GCA_000466165.1_ASM46616v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Peptidiphaga;s__Peptidiphaga sp000466165 PRJNA173932 1227261 SAMN02436889 ASM46616v1 Scaffold Newbler v. MapAsmResearch-10/14/2011 2013-12-04T15:03:58.610 United Kingdom subgingival plaque biofilm of oral cavity Illumina Washington University 120.5x 98.75 0 100 0.17 GCF_000466165.1 AWSB01 1968 2026 2026 6 3 48 1 Peptidiphaga_sp_HMT_183_homd_HMT_183 GCA_000466185.1 HMT-866 F0530 Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii F0530 29 2090952 57.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/185/GCA_000466185.1_ASM46618v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJNA198881 1321817 SAMN02436719 ASM46618v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:48.780 oral cavity- mouth Illumina Washington University 191.0x 100 0.55 99.36 0.42 GCF_000466185.1 AWSC01 1712 1775 1775 9 3 50 1 Actinomyces_graevenitzii_homd_HMT_866 GCA_000466265.1 HMT-172 F0311 Unnamed Cultivated Oral (Abundance: High) HMT-172 Schaalia sp. HMT-172 F0311 215 2469990 66.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/265/GCA_000466265.1_ASM46626v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000466265 PRJNA198883 1321775 SAMN02436818 ASM46626v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:54.487 oral cavity- mouth Illumina Washington University 161.0x 99.53 0.57 99.97 0.27 GCF_000466265.1 AWSF01 2065 2126 2126 9 2 49 1 Schaalia_sp_HMT_172_homd_HMT_172 GCA_000466335.1 HMT-458 W10330 Unnamed Cultivated Oral (Abundance: Medium) HMT-458 Aggregatibacter sp. HMT-458 W10330 45 2016624 43.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/335/GCA_000466335.1_ASM46633v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter sp000466335 PRJNA198875 1321772 SAMN02436891 ASM46633v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:58.787 oral cavity - mouth Illumina Washington University 198.0x 99.66 0 100 0.04 GCF_000466335.1 AWSH01 1864 1960 1960 46 4 45 1 Aggregatibacter_sp_HMT_458_homd_HMT_458 GCA_000466405.1 HMT-810 F0209 Named Cultivated Vaginal (Abundance: Scarce) HMT-810 Olegusella massiliensis F0209 38 1947547 49.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/405/GCA_000466405.1_ASM46640v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olegusella;s__Olegusella sp000466405 PRJNA198876 1321773 SAMN02436885 ASM46640v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:58.293 oral cavity- mouth Illumina Washington University 205.0x 100 0 99.47 1.04 GCF_000466405.1 AWSK01 1675 1737 1737 14 3 45 0 GCA_000466425.1 HMT-863 F0517 Unnamed Cultivated Oral (Abundance: Medium) HMT-863 Capnocytophaga sp. HMT-863 F0517 103 2724306 41.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/425/GCA_000466425.1_ASM46642v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sp000466425 PRJNA173935 1227266 SAMN02436819 ASM46642v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:54.547 USA supragingival plaque biofilm of a molar Illumina Washington University 145.0x 100 0 99.98 0.18 GCF_000466425.1 AWSR01 2524 2579 2579 8 2 44 1 GCA_000466585.1 HMT-876 F0540 Unnamed Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-876 Clostridiales [F3 G1] bacterium HMT-876 F0540 57 4767532 32.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/585/GCA_000466585.1_ASM46658v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AT;s__Clostridium_AT sp000466585 PRJNA198885 1321778 SAMN02436756 ASM46658v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:50.960 oral cavity- mouth Illumina Washington University 83.0x 97.24 4.72 99.33 3.72 GCF_000466585.1 AWSZ01 4599 4704 4704 74 2 28 1 GCA_000466645.1 HMT-433 UNSW3 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 UNSW3 61 1907025 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/645/GCA_000466645.1_UNSW3 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJNA177553 1242966 SAMN02471187 UNSW3 Contig Velvet v. Feb-2012 2013-12-19T13:34:50.920 Illumina HiSeq The University of New South Wales 200.0x 88.82 99.51 0.12 99.98 0.05 GCF_000466645.1 ANNE01 1935 1985 1985 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_000466645.1 HMT-433 UNSW3 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 UNSW3 61 1907025 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/645/GCA_000466645.1_UNSW3 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJNA177553 1242966 SAMN02471187 UNSW3 Contig Velvet v. Feb-2012 2013-12-19T13:34:50.920 Illumina HiSeq The University of New South Wales 200.0x 88.82 99.51 0.12 99.98 0.05 GCF_000466645.1 ANNE01 1935 1985 1985 4 2 43 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_000466665.1 HMT-433 UNSW1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 UNSW1 72 1937132 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/665/GCA_000466665.1_UNSW1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA177554 1242967 SAMN02471188 UNSW1 Contig Velvet v. Feb-2012 2013-12-19T13:34:50.980 Illumina HiSeq The University of New South Wales 200.0x 88.47 99.51 0.74 99.99 0.12 GCF_000466665.1 ANNF01 1882 1933 0 4 2 44 1 Campylobacter_concisus_HMT_433_575 GCA_000466665.1 HMT-433 UNSW1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 UNSW1 72 1937132 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/665/GCA_000466665.1_UNSW1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA177554 1242967 SAMN02471188 UNSW1 Contig Velvet v. Feb-2012 2013-12-19T13:34:50.980 Illumina HiSeq The University of New South Wales 200.0x 88.47 99.51 0.74 99.99 0.12 GCF_000466665.1 ANNF01 1882 1933 0 4 2 44 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_000466685.1 HMT-433 UNSWCS Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 UNSWCS 177 2108730 39.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/685/GCA_000466685.1_UNSWCS d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_A PRJNA177555 1242968 SAMN02471190 UNSWCS Contig Velvet v. Feb-2012 2013-12-19T13:34:51.080 Illumina HiSeq The University of New South Wales 200.0x 88.68 99.51 0.25 99.96 0.03 GCF_000466685.1 ANNG01 2164 2213 0 4 2 42 1 Campylobacter_concisus_HMT_433_575 GCA_000466685.1 HMT-433 UNSWCS Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 UNSWCS 177 2108730 39.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/685/GCA_000466685.1_UNSWCS d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_A PRJNA177555 1242968 SAMN02471190 UNSWCS Contig Velvet v. Feb-2012 2013-12-19T13:34:51.080 Illumina HiSeq The University of New South Wales 200.0x 88.68 99.51 0.25 99.96 0.03 GCF_000466685.1 ANNG01 2164 2213 0 4 2 42 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_000466705.1 HMT-433 ATCC 51561 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 ATCC 51561 69 1995701 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/705/GCA_000466705.1_ATCC51561 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA177641 1243032 SAMN02471186 ATCC51561 Contig Velvet v. Feb-2012 2013-12-19T13:34:50.863 Illumina HiSeq The University of New South Wales 200.0x 88.65 99.51 0.12 99.95 0.01 GCF_000466705.1 ANNH01 1937 1985 0 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_000466705.1 HMT-433 ATCC 51561 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 ATCC 51561 69 1995701 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/705/GCA_000466705.1_ATCC51561 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA177641 1243032 SAMN02471186 ATCC51561 Contig Velvet v. Feb-2012 2013-12-19T13:34:50.863 Illumina HiSeq The University of New South Wales 200.0x 88.65 99.51 0.12 99.95 0.01 GCF_000466705.1 ANNH01 1937 1985 0 4 2 41 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_000466745.1 HMT-575 ATCC 51562 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 ATCC 51562 21 1841750 37.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/745/GCA_000466745.1_ATCC51562 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_B PRJNA177556 1242969 SAMN02471191 ATCC51562 Contig Velvet v. Feb-2012 2013-12-19T13:34:51.123 Illumina HiSeq The University of New South Wales 200.0x 93.87 99.51 0 99.91 0.08 GCF_000466745.1 ANNI01 1842 1888 0 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_000466745.1 HMT-575 ATCC 51562 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 ATCC 51562 21 1841750 37.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/745/GCA_000466745.1_ATCC51562 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_B PRJNA177556 1242969 SAMN02471191 ATCC51562 Contig Velvet v. Feb-2012 2013-12-19T13:34:51.123 Illumina HiSeq The University of New South Wales 200.0x 93.87 99.51 0 99.91 0.08 GCF_000466745.1 ANNI01 1842 1888 0 4 2 39 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_000466785.3 HMT-608 3872 Named Cultivated Oral (Abundance: Scarce) HMT-608 Limosilactobacillus fermentum 3872 2 2330492 50.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/785/GCA_000466785.3_ASM46678v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus fermentum PRJNA213970 1381124 SAMN02314197 ASM46678v3 Complete Genome SMRTpipe v. APR-2015 2013-08-08T18:12:02.590 Russia milk from female IonTorrent; PacBio Kingston University 116.6x 99.41 99.18 0.82 99.99 0.02 GCF_000466785.3 2325 2431 2431 31 15 59 1 Limosilactobacillus_fermentum_homd_HMT_608 GCA_000466825.2 HMT-060 090104 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum 090104 48 2328061 55.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/825/GCA_000466825.2_ASM46682v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA213995 1381111 SAMN02298815 ASM46682v2 Contig IonTorrent Assembler v. 3.4.2.0 2013-08-01T15:34:10.413 Russia healthy person IonTorrent Kingston Uniiversity 25.5x 98.41 97.36 1.09 96.52 0.47 GCF_000466825.2 AVFF01 2231 2290 2290 6 5 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_000467795.1 HMT-619 F0568 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis F0568 154 2334744 48.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/795/GCA_000467795.1_ASM46779v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA173937 1227269 SAMN02436723 ASM46779v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:49.053 USA subgingival plaque biofilm Illumina Washington University 168.0x 98.57 99.92 0 99.99 0.03 GCF_000467795.1 AWUU01 1997 2058 2058 11 3 46 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000467815.1 HMT-619 F0569 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis F0569 111 2249227 48.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/815/GCA_000467815.1_ASM46781v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA173938 1227270 SAMN02436724 ASM46781v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:49.120 USA subgingival plaque biofilm Illumina Washington University 175.0x 98.45 99.92 0.16 99.99 0.02 GCF_000467815.1 AWUV01 1891 1956 1956 15 3 46 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000467835.1 HMT-619 F0570 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis F0570 117 2282791 48.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/835/GCA_000467835.1_ASM46783v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA173939 1227271 SAMN02436747 ASM46783v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:50.430 USA subgingival plaque biofilm Illumina Washington University 172.0x 98.53 99.61 0 99.99 0.03 GCF_000467835.1 AWUW01 1955 2016 2016 13 3 44 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000467855.2 HMT-278 W7784 Unnamed Cultivated Oral (Abundance: Medium) HMT-278 Porphyromonas sp. HMT-278 W7784 38 2158216 55.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/855/GCA_000467855.2_ASM46785v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas sp000467855 PRJNA173940 1227272 SAMN02436880 ASM46785v2 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:58.023 Finland dental plaque biofilm of the third molar Illumina Washington University 181.0x 98.81 0.16 99.75 0.03 GCF_000467855.2 AWUX01 1659 1719 1719 7 5 47 1 Porphyromonas_sp_HMT_278_homd_HMT_278 GCA_000467895.1 HMT-314 F0091 Unnamed Cultivated Oral (Abundance: Medium) HMT-469 Prevotella melaninogenica F0091 132 3193725 41.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/895/GCA_000467895.1_ASM46789v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp000467895 PRJNA173942 1227276 SAMN02436813 ASM46789v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:54.220 USA subgingival plaque biofilm Illumina Washington University 125.0x 98.31 0 99.95 0.06 GCF_000467895.1 AWUZ01 2591 2652 2652 14 2 44 1 Prevotella_sp_HMT_314_homd_HMT_314 GCA_000467915.2 HMT-768 W1703 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus W1703 83 2112484 43.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/915/GCA_000467915.2_ASM46791v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA173941 1227275 SAMN02436725 ASM46791v2 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:49.180 United Kingdom dental plaque biofilm of the third molar tooth of an individual diagnosed with p Illumina Washington University 188.0x 98.8 99.25 0 100 0.1 GCF_000467915.2 AWVA01 1960 2033 2033 31 3 38 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000467935.1 HMT-113 W5053 Unnamed Cultivated Oral (Abundance: Scarce) HMT-113 Peptoniphilaceae [G1] bacterium HMT-113 W5053 129 2088253 37.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/935/GCA_000467935.1_ASM46793v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__W5053;s__W5053 sp000467935 PRJNA198890 1321784 SAMN02436814 ASM46793v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:54.277 oral cavity- mouth Illumina Washington University 190.0x 98.43 0.7 98.58 1.07 GCF_000467935.1 AWVB01 2015 2092 2092 31 3 42 1 Peptoniphilaceae__G1__bacterium_HMT_113_homd_HMT_113 GCA_000467955.1 HMT-619 F0185 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis F0185 113 2246368 48.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/955/GCA_000467955.1_ASM46795v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA198891 1321821 SAMN02436815 ASM46795v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:54.333 oral cavity- mouth Illumina Washington University 177.0x 98.46 99.92 0 100 0.03 GCF_000467955.1 AWVC01 1897 1957 1957 11 3 45 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000467975.1 HMT-619 F0566 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis F0566 192 2306092 48.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/975/GCA_000467975.1_ASM46797v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA198892 1321822 SAMN02436881 ASM46797v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:58.080 oral cavity- mouth Illumina Washington University 172.0x 98.58 99.92 0.16 100 0.02 GCF_000467975.1 AWVD01 1944 2006 2006 13 3 45 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000467995.1 HMT-619 W4087 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis W4087 114 2216597 48.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/995/GCA_000467995.1_ASM46799v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA198893 1321823 SAMN02436749 ASM46799v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:50.547 oral cavity- mouth Illumina Washington University 180.0x 98.65 99.92 0 99.99 0.04 GCF_000467995.1 AWVE01 1870 1932 1932 13 3 45 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000468035.1 HMT-892 F0426 Unnamed Cultivated Oral (Abundance: Low) HMT-892 Selenomonas sp. HMT-892 F0426 40 2314792 55.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/035/GCA_000468035.1_ASM46803v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda sp000468035 PRJNA198895 1321786 SAMN02436726 ASM46803v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:49.250 oral cavity- mouth Illumina Washington University 172.0x 99.31 0.05 99.99 0.29 GCF_000468035.1 AWVG01 2120 2199 2199 23 4 51 1 GCA_000468055.1 HMT-653 ATCC 700332 Named Cultivated Oral (Abundance: Medium) HMT-653 Treponema lecithinolyticum ATCC 700332 21 2340885 43.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/055/GCA_000468055.1_ASM46805v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_C;s__Treponema_C lecithinolyticum PRJNA198879 1321815 SAMN02436727 ASM46805v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:49.310 oral cavity- mouth Illumina Washington University 170.0x 99.3 0 99.94 0.23 GCF_000468055.1 AWVH01 2041 2092 2092 3 3 44 1 GCA_000468115.1 HMT-769 ATCC 35536 Named Cultivated Oral (Abundance: Medium) HMT-769 Treponema socranskii subsp. socranskii ATCC 35536 84 2826695 49.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/115/GCA_000468115.1_TsocrATCC35536v1.0 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D socranskii PRJNA216958 1125725 SAMN02344580 TsocrATCC35536v1.0 Contig Newbler v. 2.6 2013-09-04T11:05:15.103 Illumina The J. Craig Venter Institute 85.0x 92.24 99.28 0 99.2 0.44 GCF_000468115.1 AVQI01 2504 2557 0 3 3 46 1 Treponema_socranskii_subsp_socranskii_homd_HMT_769 GCA_000468115.1 HMT-769 ATCC 35536 Named Cultivated Oral (Abundance: Medium) HMT-769 Treponema socranskii subsp. socranskii ATCC 35536 84 2826695 49.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/115/GCA_000468115.1_TsocrATCC35536v1.0 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D socranskii PRJNA216958 1125725 SAMN02344580 TsocrATCC35536v1.0 Contig Newbler v. 2.6 2013-09-04T11:05:15.103 Illumina The J. Craig Venter Institute 85.0x 92.24 99.28 0 99.2 0.44 GCF_000468115.1 AVQI01 2504 2557 0 3 3 46 1 Treponema_socranskii_HMT_438_440_769 GCA_000468135.1 HMT-303 F0068 Named Cultivated Oral (Abundance: Medium) HMT-303 Hoylesella pleuritidis F0068 51 2709958 44.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/135/GCA_000468135.1_PpleuF0068v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pleuritidis PRJNA72901 1081904 SAMN02436482 PpleuF0068v1.0 Contig Newbler v. 2.6 2013-12-04T14:28:26.516 454 J. Craig Venter Institute 56.0x 98.83 98.65 0 99.99 0.06 GCF_000468135.1 AWET01 2307 2366 2366 8 3 47 1 Hoylesella_pleuritidis_homd_HMT_303 GCA_000468535.1 HMT-386 ChDC B134 Named Cultivated Oral (Abundance: Scarce) HMT-386 Anaerosphaera mikwangii ChDC B134 5 1499757 30.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/535/GCA_000468535.1_ASM46853v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerosphaera;s__Anaerosphaera mikwangii PRJNA210514 1354300 SAMN02469576 ASM46853v1 Contig SOAPdenovo v. 1.04 2013-12-19T13:01:16.900 South Korea oral cavity Illumina HiSeq KCOM and Dental School of Chosun University 215.0x 98.95 0 100 0.55 GCF_000468535.1 AUQY01 1394 1471 1471 17 12 47 1 Anaerosphaera_mikwangii_homd_HMT_386 GCA_000468635.1 HMT-553 F0067 Named Cultivated Oral (Abundance: Medium) HMT-553 Segatella baroniae F0067 44 3024338 53.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/635/GCA_000468635.1_PbaroF0067v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella baroniae PRJNA78601 1115809 SAMN00828753 PbaroF0067v1.0 Contig Newbler v. 2.6 2012-03-15T11:25:02.346 454 J. Craig Venter Institute 38.0x 98.31 99.32 0.51 96.06 0 GCF_000468635.1 AWEY01 2391 2450 2450 6 3 49 1 Segatella_baroniae_homd_HMT_553 GCA_000468755.1 HMT-806 F0195 Named Cultivated Oral (Abundance: Scarce) HMT-806 Olsenella profusa F0195 73 2724935 64.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/755/GCA_000468755.1_OprofF0195v1.0 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_F;s__Olsenella_F profusa PRJNA78893 1125712 SAMN00792224 OprofF0195v1.0 Contig Newbler v. 2.6 2012-02-23T16:16:15.607 Illumina J. Craig Venter Institute 46.0x 98.93 100 0 99.37 0.43 GCF_000468755.1 AWEZ01 2572 2639 2639 14 3 50 0 Olsenella_profusa_homd_HMT_806 GCA_000468815.1 HMT-674 BV3Ac4 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-674 Atopobium minutum BV3Ac4 8 1717627 48.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/815/GCA_000468815.1_AspBV3AC4v1.0 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium;s__Atopobium minutum PRJNA89625 1111121 SAMN00829142 AspBV3AC4v1.0 Contig Newbler v. 2.6 2012-03-20T16:04:02.507 454 JCVI 49.0x 100 0 99.97 0.54 GCF_000468815.1 AWUQ01 1576 1634 1634 9 3 45 1 Atopobium_minutum_homd_HMT_674 GCA_000468895.1 HMT-777 BV3C21 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-777 Jonquetella anthropi BV3C21 29 1654274 59.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/895/GCA_000468895.1_JspBV3C21v1.0 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Jonquetella;s__Jonquetella anthropi PRJNA89629 1111126 SAMN00829156 JspBV3C21v1.0 Contig Newbler v. 2.6 2012-03-20T16:18:08.863 454 JCVI 52.0x 100 0 99.97 0.16 GCF_000468895.1 AWWC01 1506 1573 1573 12 3 51 1 Jonquetella_anthropi_homd_HMT_777 GCA_000469365.1 HMT-558 ATCC 14869 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-558 Levilactobacillus brevis ATCC 14869 86 2473047 46.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/365/GCA_000469365.1_ASM46936v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis PRJNA38325 649758 SAMN02436750 ASM46936v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:50.606 gastrointestinal tract Illumina WUGSC 119.0x 99.99 96.98 0.99 99.77 0.22 GCF_000469365.1 AWVK01 2396 2481 2481 30 3 51 1 Levilactobacillus_brevis_homd_HMT_558 GCA_000469385.1 HMT-879 F0557 Unnamed Cultivated Oral (Abundance: Medium) HMT-879 Leptotrichia sp. HMT-879 F0557 79 2415750 29.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/385/GCA_000469385.1_ASM46938v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia sp000469385 PRJNA173936 1227268 SAMN02436883 ASM46938v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:58.187 USA subgingival plaque biofilm Illumina Washington University 165.0x 100 1.14 99.93 0.12 GCF_000469385.1 AWVL01 2279 2324 2324 16 3 25 1 GCA_000469405.1 HMT-222 F0279 Named Cultivated Oral (Abundance: Medium) HMT-222 Leptotrichia wadei F0279 74 2353455 29.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/405/GCA_000469405.1_ASM46940v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei PRJNA53015 888055 SAMN02436884 ASM46940v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:58.240 USA supragingival plaque biofilm of a molar Illumina Washington University 169.0x 97.44 100 3 99.99 0.2 GCF_000469405.1 AWVM01 2159 2205 2205 15 4 26 1 Leptotrichia_wadei_homd_HMT_222 GCA_000469465.1 HMT-555 ATCC 700627 Named Cultivated Oral (Abundance: Scarce) HMT-555 Gemella bergeri ATCC 700627 89 1604508 30.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/465/GCA_000469465.1_ASM46946v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella bergeri PRJNA198886 1321820 SAMN02436752 ASM46946v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:50.740 blood Illumina Washington University 249.0x 98.28 0 100 0.15 GCF_000469465.1 AWVP01 1480 1538 1538 21 4 32 1 GCA_000469505.1 HMT-215 W9775 Unnamed Cultivated Oral (Abundance: High) HMT-215 Pseudoleptotrichia sp. HMT-215 W9775 54 2308492 31.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/505/GCA_000469505.1_ASM46950v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia_A;s__Leptotrichia_A sp000469505 PRJNA198887 1321779 SAMN02436816 ASM46950v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:54.380 oral cavity- mouth Illumina Washington University 173.0x 100 2.81 99.94 0.6 GCF_000469505.1 AWVR01 2139 2196 2196 19 3 34 1 Pseudoleptotrichia_sp_HMT_215_homd_HMT_215 GCA_000469525.1 HMT-225 F0581 Unnamed Cultivated Oral (Abundance: Medium) HMT-225 Leptotrichia sp. HMT-225 F0581 174 2400083 29.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/525/GCA_000469525.1_ASM46952v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia massiliensis PRJNA198878 1321774 SAMN02436812 ASM46952v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:54.170 oral cavity- mouth Illumina Washington University 166.0x 100 1.7 99.99 0.29 GCF_000469525.1 AWVS01 2225 2267 2267 14 3 24 1 Leptotrichia_sp_HMT_225_homd_HMT_225 GCA_000469545.1 HMT-131 W9106 Unnamed Cultivated Oral (Abundance: Scarce) HMT-131 Mitsuokella sp. HMT-131 W9106 25 2313357 56.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/545/GCA_000469545.1_ASM46954v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__AWVT01;s__AWVT01 sp000469545 PRJNA198888 1321781 SAMN02436729 ASM46954v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:49.430 oral cavity- mouth Illumina Washington University 172.0x 98.91 0.08 100 0.07 GCF_000469545.1 AWVT01 2112 2186 2186 20 3 50 1 Mitsuokella_sp_HMT_131_homd_HMT_131 GCA_000469565.1 HMT-078 F0263 Unnamed Cultivated Oral (Abundance: Medium) HMT-078 Oribacterium sp. HMT-078 F0263 69 2694758 54.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/565/GCA_000469565.1_ASM46956v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium sp000160135 PRJNA198889 1321782 SAMN02436879 ASM46956v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:57.973 oral cavity- mouth Illumina Washington University 148.0x 98.09 0 95.91 0.11 GCF_000469565.1 AWVU01 2336 2436 2436 50 2 47 1 Oribacterium_sp_HMT_078_homd_HMT_078 GCA_000469705.1 HMT-529 CIP 76.13 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-529 Lactobacillus acidophilus CIP 76.13 34 1951821 34.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/705/GCA_000469705.1_LaCIP7613V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus PRJEB1532 1423717 SAMEA2272342 LaCIP7613V1 Scaffold 2013-12-20T12:43:21.423 INRA STLO 464.0x 99.98 98.3 0.06 99.87 0.65 GCF_000469705.1 CBLQ01 1859 1961 1961 40 3 58 1 Lactobacillus_acidophilus_homd_HMT_529 GCA_000469905.1 HMT-646 AA417 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae AA417 1 1991234 48.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/905/GCA_000469905.1_AA417 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB1646 1305791 SAMEA2272445 AA417 Scaffold 2013-12-20T12:43:29.266 ebi 172.0x 98.33 98.81 0 100 0.28 GCF_000469905.1 CBQY01 1949 2014 2014 13 3 48 1 Kingella_kingae_homd_HMT_646 GCA_000470115.1 HMT-646 KK199 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK199 1 1991254 48.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/470/115/GCA_000470115.1_KK199 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB1628 1305776 SAMEA2272761 KK199 Scaffold 2013-12-20T12:43:59.280 ebi 154.0x 98.37 98.85 0 100 0.32 GCF_000470115.1 CBTF01 1946 2011 2011 13 3 48 1 Kingella_kingae_homd_HMT_646 GCA_000470155.1 HMT-646 KK145 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK145 1 1991194 48.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/470/155/GCA_000470155.1_KK145 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB1617 1305593 SAMEA2272028 KK145 Scaffold 2013-12-20T12:42:49.253 ebi 229.0x 98.38 98.85 0 100 0.32 GCF_000470155.1 CBSI01 1947 2012 2012 13 3 48 1 Kingella_kingae_homd_HMT_646 GCA_000470255.1 HMT-646 KK12 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK12 1 1991016 48.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/470/255/GCA_000470255.1_KK12 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB1638 1305786 SAMEA2272103 KK12 Scaffold 2013-12-20T12:42:58.073 ebi 140.0x 98.39 98.85 0 100 0.25 GCF_000470255.1 CBSF01 1933 1999 1999 14 3 48 1 Kingella_kingae_homd_HMT_646 GCA_000470275.1 HMT-646 KK156 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK156 1 1991357 48.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/470/275/GCA_000470275.1_KK156 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB1618 1305594 SAMEA2272055 KK156 Scaffold 2013-12-20T12:42:53.036 ebi 214.0x 98.39 98.85 0 100 0.38 GCF_000470275.1 CBSJ01 1933 1998 1998 13 3 48 1 Kingella_kingae_homd_HMT_646 GCA_000470415.1 HMT-646 KK107 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK107 1 1991285 48.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/470/415/GCA_000470415.1_KK107 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB1645 1305790 SAMEA2272676 KK107 Scaffold 2013-12-20T12:43:49.863 ebi 115.0x 98.36 98.63 0 100 0.26 GCF_000470415.1 CBSN01 1949 2014 2014 13 3 48 1 Kingella_kingae_homd_HMT_646 GCA_000470475.1 HMT-646 KK83 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK83 1 1991029 48.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/470/475/GCA_000470475.1_KK83 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB1616 1305592 SAMEA2272003 KK83 Scaffold 2013-12-20T12:42:45.880 ebi 35.0x 98.33 98.63 0 99.99 0.26 GCF_000470475.1 CBSH01 1964 2029 2029 14 3 47 1 Kingella_kingae_homd_HMT_646 GCA_000470675.1 HMT-646 KK6 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK6 1 1991268 48.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/470/675/GCA_000470675.1_ASM47067v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB1643 1305789 SAMEA2272499 ASM47067v1 Scaffold 2013-12-20T12:43:33.853 ebi 98.31 98.85 0 100 0.4 GCF_000470675.1 CBSC01 1949 2014 2014 13 3 48 1 Kingella_kingae_homd_HMT_646 GCA_000470845.1 HMT-550 SA957 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus SA957 1 2789538 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/470/845/GCA_000470845.1_ASM47084v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA167119 1201010 SAMN00996491 ASM47084v1 Complete Genome 2012-05-17T09:05:32.640 Chang Gung Memorial Hospital 98.64 99.51 0.22 100 0.12 GCF_000470845.1 2551 2747 2747 119 16 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_000470865.1 HMT-550 SA40 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus SA40 1 2728308 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/470/865/GCA_000470865.1_ASM47086v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA167373 1194085 SAMN02603110 ASM47086v1 Complete Genome 2014-01-30T11:19:32.830 Chang Gung Memorial Hospital 98.68 99.49 0.22 100 0.12 GCF_000470865.1 2459 2655 2655 118 16 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_000471945.1 HMT-895 ATCC 27673 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-895 Bifidobacterium animalis ATCC 27673 1 1963012 60.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/471/945/GCA_000471945.1_ASM47194v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis PRJNA133057 1167629 SAMN02603715 ASM47194v1 Complete Genome Newbler v. 2.3 2014-01-30T14:21:48.207 454 GS FLX Penn State 50.0x 99.53 99.71 0 99.57 1.01 GCF_000471945.1 1606 1681 1681 9 12 53 1 Bifidobacterium_animalis_homd_HMT_895 GCA_000472405.1 HMT-530 DSM 1897 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes DSM 1897 10 2478994 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/472/405/GCA_000472405.1_ASM47240v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA169817 1122995 SAMN02440711 ASM47240v1 Contig Velvet v. 1.1.04; ALLPATHS v. r41043 2013-12-11T13:07:39.843 Illumina DOE Joint Genome Institute 99.99 99.43 0.03 100 0.11 GCF_000472405.1 AWZZ01 2303 2378 2378 23 4 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_000473485.1 HMT-571 ATCC 25416 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-571 Burkholderia cepacia ATCC 25416 4 8612710 66.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/473/485/GCA_000473485.1_ASM47348v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia cepacia PRJNA66169 983594 SAMN02440719 ASM47348v1 Scaffold ALLPATHS v. R37654 2013-12-11T13:07:40.513 454-GS-FLX-Titanium; Illumina GAII; Sanger JGI 99.99 100 0.4 100 0.1 GCF_000473485.1 AXBO01 7771 7936 7936 59 26 79 1 Burkholderia_cepacia_homd_HMT_571 GCA_000474055.1 HMT-543 SK52 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus SK52 24 1900641 38.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/474/055/GCA_000474055.1_ASM47405v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJDB75 1000570 SAMD00036758 ASM47405v1 Contig Newbler v. 2.6.0 2015-09-16T16:10:39.000 Roche 454 Pediatric Dentistry, Tokyo Dental College 35.0x 99.99 99.82 0 99.95 0.03 GCF_000474055.1 BAST01 1841 1944 1944 52 3 47 1 Streptococcus_anginosus_homd_HMT_543 GCA_000474075.1 HMT-576 SK53 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus SK53 89 1855617 37.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/474/075/GCA_000474075.1_ASM47407v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJDB76 1095730 SAMD00036759 ASM47407v1 Contig Newbler v. 2.6.0 2015-09-16T16:10:40.000 Roche 454 Pediatric Dentistry, Tokyo Dental College 35.0x 99.99 99.35 0.5 99.97 0.26 GCF_000474075.1 BASU01 1791 1904 1904 62 3 47 1 Streptococcus_constellatus_homd_HMT_576 GCA_000474095.1 HMT-543 SK54 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus SK54 30 1900949 38.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/474/095/GCA_000474095.1_ASM47409v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJDB77 1095731 SAMD00036760 ASM47409v1 Contig Newbler v. 2.6.0 2015-09-16T16:10:40.000 Roche 454 Pediatric Dentistry, Tokyo Dental College 35.0x 87.47 100 0 99.96 0.03 GCF_000474095.1 BASV01 1851 1955 1955 53 3 47 1 Streptococcus_anginosus_homd_HMT_543 GCA_000474135.1 HMT-576 CCUG 46377 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus CCUG 46377 66 1950566 37.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/474/135/GCA_000474135.1_ASM47413v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJDB79 1035184 SAMD00036762 ASM47413v1 Contig Newbler v. 2.6.0 2015-09-16T16:10:41.000 Roche 454 Pediatric Dentistry, Tokyo Dental College 35.0x 96.49 99.17 0.35 99.78 0.45 GCF_000474135.1 BASX01 1963 2051 2051 36 3 48 1 Streptococcus_constellatus_homd_HMT_576 GCA_000474155.1 HMT-543 T5 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus T5 42 1789216 39.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/474/155/GCA_000474155.1_ASM47415v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJDB80 1163302 SAMD00036763 ASM47415v1 Contig Newbler v. 2.6.0 2015-09-16T16:10:41.000 Roche 454 Pediatric Dentistry, Tokyo Dental College 35.0x 96.1 99.82 0 99.96 0.04 GCF_000474155.1 BASY01 1705 1796 1796 41 3 46 1 Streptococcus_anginosus_homd_HMT_543 GCA_000477535.1 HMT-307 F0493 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae F0493 32 3099908 41.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/535/GCA_000477535.1_PsaliF0493v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA217512 1395125 SAMN02339451 PsaliF0493v1.0 Contig Newbler v. 2.6 2013-08-29T13:00:04.333 USA 454 The J. Craig Venter Institute 52.0x 97.03 99.24 0.34 99.96 0.15 GCF_000477535.1 AWGW01 2584 2651 2651 11 3 52 1 Segatella_salivae_homd_HMT_307 GCA_000477655.1 HMT-530 KPL2009 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes KPL2009 4 2491109 60.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/655/GCA_000477655.1_Prop_sp_KPL2009_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA170375 1203635 SAMN02597010 Prop_sp_KPL2009_V1 Scaffold allpaths v. R46652 2014-01-27T09:49:03.513 Illumina Broad Institute 284.0x 98.94 0.03 100 0.13 GCF_000477655.1 AXMD01 2307 2385 2385 23 7 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_000477675.1 HMT-552 KPL2005 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum KPL2005 6 2569252 63.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/675/GCA_000477675.1_Prop_sp_KPL2005_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA170373 1203633 SAMN02597012 Prop_sp_KPL2005_V1 Scaffold allpaths v. R46652 2014-01-27T09:49:03.603 Illumina Broad Institute 281.0x 100 0 100 0.09 GCF_000477675.1 AXMF01 2340 2425 2425 24 12 48 1 Cutibacterium_avidum_homd_HMT_552 GCA_000477695.1 HMT-552 KPL1852 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum KPL1852 4 2527710 63.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/695/GCA_000477695.1_Prop_sp_KPL1852_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA169465 1203576 SAMN02597016 Prop_sp_KPL1852_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.777 Illumina Broad Institute 137.0x 100 0 100 0.16 GCF_000477695.1 AXMJ01 2306 2385 2385 23 9 46 1 Cutibacterium_avidum_homd_HMT_552 GCA_000477715.1 HMT-114 KPL1844 Named Cultivated Skin (Abundance: High) HMT-114 Cutibacterium granulosum KPL1844 4 2127845 64.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/715/GCA_000477715.1_Prop_sp_KPL1844_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium granulosum PRJNA169462 1203573 SAMN02597019 Prop_sp_KPL1844_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.927 Illumina Broad Institute 275.0x 98.79 1.97 98.65 0.31 GCF_000477715.1 AXMM01 1792 1864 1864 18 6 47 1 Cutibacterium_granulosum_homd_HMT_114 GCA_000477735.1 HMT-552 KPL1838 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum KPL1838 3 2533889 63.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/735/GCA_000477735.1_Prop_sp_KPL1838_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA169461 1203572 SAMN02597020 Prop_sp_KPL1838_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.970 Illumina Broad Institute 133.0x 100 0 100 0.12 GCF_000477735.1 AXMN01 2297 2381 2381 23 14 46 1 Cutibacterium_avidum_homd_HMT_552 GCA_000477755.1 HMT-530 KPL2008 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes KPL2008 2 2560551 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/755/GCA_000477755.1_Prop_sp_KPL2008_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA170374 1203634 SAMN02597011 Prop_sp_KPL2008_V1 Contig allpaths v. R46652 2014-01-27T09:49:03.560 Illumina Broad Institute 284.0x 100 0 100 0.12 GCF_000477755.1 AXME01 2365 2446 2446 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_000477775.1 HMT-530 KPL2003 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes KPL2003 2 2493425 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/775/GCA_000477775.1_Prop_sp_KPL2003_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA170371 1203631 SAMN02597013 Prop_sp_KPL2003_V1 Contig allpaths v. R46652 2014-01-27T09:49:03.647 Illumina Broad Institute 285.0x 99.43 0.03 100 0.09 GCF_000477775.1 AXMG01 2303 2383 2383 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_000477795.1 HMT-552 KPL2000 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum KPL2000 3 2562188 63.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/795/GCA_000477795.1_Prop_sp_KPL2000_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA170369 1203629 SAMN02597014 Prop_sp_KPL2000_V1 Contig allpaths v. R46499 2014-01-27T09:49:03.690 Illumina Broad Institute 137.0x 100 0 100 0.11 GCF_000477795.1 AXMH01 2335 2417 2417 24 9 48 1 Cutibacterium_avidum_homd_HMT_552 GCA_000477835.1 HMT-530 KPL1849 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes KPL1849 2 2472171 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/835/GCA_000477835.1_Prop_sp_KPL1849_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA169464 1203575 SAMN02597017 Prop_sp_KPL1849_V1 Contig allpaths v. R46499 2014-01-27T09:49:03.820 Illumina Broad Institute 280.0x 100 0 99.88 0.08 GCF_000477835.1 AXMK01 2285 2364 2364 23 9 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_000477855.1 HMT-530 KPL1847 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes KPL1847 4 2483868 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/855/GCA_000477855.1_Prop_sp_KPL1847_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA169463 1203574 SAMN02597018 Prop_sp_KPL1847_V1 Contig allpaths v. R46499 2014-01-27T09:49:03.867 Illumina Broad Institute 278.0x 100 0 99.88 0.07 GCF_000477855.1 AXML01 2283 2368 2368 23 15 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_000477875.1 HMT-019 KPL2004 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL2004 6 2575948 59.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/875/GCA_000477875.1_Cory_sp_KPL2004_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA170372 1203632 SAMN02596994 Cory_sp_KPL2004_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:02.787 Illumina Broad Institute 180.0x 99.78 0 99.99 0.04 GCF_000477875.1 AXLN01 2380 2450 2450 7 11 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_000477895.1 HMT-019 KPL1998 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL1998 4 2568130 59.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/895/GCA_000477895.1_Cory_sp_KPL1998_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA170367 1203627 SAMN02596995 Cory_sp_KPL1998_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:02.853 Illumina Broad Institute 132.0x 99.78 0 99.99 0.04 GCF_000477895.1 AXLO01 2380 2450 2450 7 11 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_000477915.1 HMT-019 KPL1996 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL1996 3 2576022 59.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/915/GCA_000477915.1_Cory_sp_KPL1996_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA170365 1203625 SAMN02596996 Cory_sp_KPL1996_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:02.897 Illumina Broad Institute 141.0x 99.78 0 99.99 0.04 GCF_000477915.1 AXLP01 2384 2458 2458 7 15 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_000477935.1 HMT-060 KPL1995 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL1995 1 2313371 55.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/935/GCA_000477935.1_Cory_sp_KPL1995_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA170364 1203624 SAMN02596997 Cory_sp_KPL1995_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:02.950 Illumina Broad Institute 143.0x 99.67 0.33 100 0.36 GCF_000477935.1 AXLQ01 2062 2129 2129 6 12 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_000477955.1 HMT-060 KPL1989 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL1989 3 2317860 55.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/955/GCA_000477955.1_Cory_sp_KPL1989_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA170362 1203622 SAMN02596998 Cory_sp_KPL1989_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:02.990 Illumina Broad Institute 251.0x 99.67 0.33 100 0.36 GCF_000477955.1 AXLR01 2061 2130 2130 6 15 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_000477975.1 HMT-019 KPL1986 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL1986 1 2568149 59.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/975/GCA_000477975.1_Cory_sp_KPL1986_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA170359 1203619 SAMN02596999 Cory_sp_KPL1986_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.033 Illumina Broad Institute 141.0x 99.78 0 99.99 0.04 GCF_000477975.1 AXLS01 2384 2453 2453 7 10 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_000477995.1 HMT-783 KPL1860 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii KPL1860 8 2484887 58.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/477/995/GCA_000477995.1_Cory_sp_KPL1860_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA169447 1203567 SAMN02597000 Cory_sp_KPL1860_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.077 Illumina Broad Institute 144.0x 99.78 0 100 0.03 GCF_000477995.1 AXLT01 2330 2408 2408 10 16 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_000478035.1 HMT-783 KPL1857 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii KPL1857 4 2489851 58.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/478/035/GCA_000478035.1_Cory_sp_KPL1857_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA169444 1203564 SAMN02597002 Cory_sp_KPL1857_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.160 Illumina Broad Institute 284.0x 99.78 0 100 0.03 GCF_000478035.1 AXLV01 2338 2415 2415 11 14 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_000478055.1 HMT-783 KPL1856 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii KPL1856 6 2465753 58.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/478/055/GCA_000478055.1_Cory_sp_KPL1856_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA169443 1203563 SAMN02597003 Cory_sp_KPL1856_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.203 Illumina Broad Institute 147.0x 99.78 0 100 0.03 GCF_000478055.1 AXLW01 2324 2396 2396 10 10 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_000478095.1 HMT-019 KPL1824 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL1824 2 2638979 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/478/095/GCA_000478095.1_Cory_sp_KPL1824_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA169441 1203561 SAMN02597005 Cory_sp_KPL1824_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.300 Illumina Broad Institute 140.0x 99.78 0 99.99 0.34 GCF_000478095.1 AXLY01 2460 2536 2536 7 16 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_000478115.1 HMT-783 KPL1821 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii KPL1821 7 2470873 58.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/478/115/GCA_000478115.1_Cory_sp_KPL1821_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA169440 1203560 SAMN02597006 Cory_sp_KPL1821_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.343 Illumina Broad Institute 287.0x 99.78 0 100 0.03 GCF_000478115.1 AXLZ01 2329 2399 2399 10 8 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_000478135.1 HMT-019 KPL1818 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL1818 6 2588539 59.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/478/135/GCA_000478135.1_Cory_sp_KPL1818_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA169439 1203559 SAMN02597007 Cory_sp_KPL1818_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.387 Illumina Broad Institute 142.0x 99.78 0 100 0.32 GCF_000478135.1 AXMA01 2408 2487 2487 8 18 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_000478155.1 HMT-783 KPL1817 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii KPL1817 10 2453143 58.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/478/155/GCA_000478155.1_Cory_sp_KPL1817_V1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA169438 1203558 SAMN02597008 Cory_sp_KPL1817_V1 Scaffold allpaths v. R46499 2014-01-27T09:49:03.430 Illumina Broad Institute 144.0x 99.78 0 100 0.03 GCF_000478155.1 AXMB01 2319 2387 2387 10 6 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_000478925.1 HMT-543 MAS624 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus MAS624 1 2122284 38.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/478/925/GCA_000478925.1_ASM47892v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus whileyi PRJDB81 1353243 SAMD00061060 ASM47892v1 Complete Genome Newbler v. 2.6.0 2016-09-28T01:02:14.918 Roche 454; Illumina; Sanger Pediatric Dentistry, Tokyo Dental College 80.0x 99.35 100 0 99.97 0.2 GCF_000478925.1 2108 2232 2232 43 15 65 1 Streptococcus_anginosus_homd_HMT_543 GCA_000479025.1 HMT-188 F0184 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria F0184 32 2603188 56.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/479/025/GCA_000479025.1_ASM47902v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA52997 888019 SAMN02436738 ASM47902v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:49.943 oral cavity - mouth Illumina Washington University 153.0x 97.41 98.34 0 100 0.02 GCF_000479025.1 AXZG01 2264 2330 2330 13 4 48 1 Rothia_aeria_homd_HMT_188 GCA_000479185.1 HMT-202 CTI-6 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum CTI-6 79 2447188 26.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/479/185/GCA_000479185.1_Fuso_nucl_CTI-6_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA197117 1316587 SAMN02597022 Fuso_nucl_CTI-6_V1 Contig velvet v. 1.1.06 2014-01-27T09:49:04.087 Illumina Broad Institute 146.0x 92.37 100 0 99.98 0.01 GCF_000479185.1 AXNV01 2383 2441 2441 24 2 31 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_000479205.1 HMT-200 CTI-7 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii CTI-7 46 2143762 27.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/479/205/GCA_000479205.1_Fuso_nucl_CTI-7_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA197118 1316588 SAMN02597021 Fuso_nucl_CTI-7_V1 Scaffold allpaths v. R45561 2014-01-27T09:49:04.023 Illumina Broad Institute 57.0x 92.46 98.88 2.25 99.96 1.7 GCF_000479205.1 AXNU01 1974 2047 2047 17 8 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_000479225.1 HMT-420 CTI-5 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis CTI-5 33 2391779 27.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/479/225/GCA_000479225.1_Fuso_nucl_CTI-5_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA197116 1316586 SAMN02597023 Fuso_nucl_CTI-5_V1 Scaffold allpaths v. R45561 2014-01-27T09:49:04.130 Illumina Broad Institute 38.0x 91.77 100 0 100 0.67 GCF_000479225.1 AXNW01 2299 2362 2362 17 6 39 1 Fusobacterium_animalis_homd_HMT_420 GCA_000479245.1 HMT-420 CTI-3 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis CTI-3 6 2205574 27.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/479/245/GCA_000479245.1_Fuso_nucl_CTI-3_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA170358 1204476 SAMN02597024 Fuso_nucl_CTI-3_V1 Scaffold allpaths v. R45374 2014-01-27T09:49:04.173 Illumina Broad Institute 140.0x 91.77 100 0 100 0.03 GCF_000479245.1 AXNX01 2050 2127 2127 19 11 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_000479265.1 HMT-698 CTI-2 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto CTI-2 50 2284954 28.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/479/265/GCA_000479265.1_Fuso_nucl_CTI-2_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA170357 1204475 SAMN02597025 Fuso_nucl_CTI-2_V1 Scaffold allpaths v. R46212 2014-01-27T09:49:04.217 Illumina Broad Institute 36.0x 98.87 98.88 0.72 99.99 0.57 GCF_000479265.1 AXNY01 2088 2166 2166 18 10 49 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_000479285.1 HMT-420 CTI-1 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis CTI-1 8 2429447 27.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/479/285/GCA_000479285.1_Fuso_nucl_CTI-1_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA170356 1204474 SAMN02597026 Fuso_nucl_CTI-1_V1 Scaffold allpaths v. R45561 2014-01-27T09:49:04.260 Illumina Broad Institute 112.0x 91.71 100 0 100 0.24 GCF_000479285.1 AXNZ01 2258 2331 2331 20 7 45 1 Fusobacterium_animalis_homd_HMT_420 GCA_000479315.1 HMT-456 na Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis na 1 2023580 42.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/479/315/GCA_000479315.1_ASM47931v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA214028 1156431 SAMN02343234 ASM47931v1 Complete Genome gsAssembler v. 2.6; CLCgenomics workbench v. 6.0 2013-09-03T03:28:04.046 ABI 3730; 454 GS FLX Titanium plus; Illumina Hiseq 2000 Kyung Hee University 1000.0x 97 99.83 0 99.99 0.03 GCF_000479315.1 1875 2010 0 37 13 84 1 Streptococcus_ilei_homd_HMT_456 GCA_000479335.1 HMT-456 I-G2 Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis I-G2 1 1992567 42.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/479/335/GCA_000479335.1_ASM47933v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA214027 1156431 SAMN02299294 ASM47933v1 Complete Genome gsAssembler v. 2.6; CLCgenomics workbench v. 6.0 2013-08-02T04:15:31.710 ABI 3730; 454 GS FLX Titanium plus; Illumina Hiseq 2000 Kyung Hee University 1000.0x 99.83 0 99.99 0.07 GCF_000479335.1 1861 1965 0 35 9 59 1 Streptococcus_ilei_homd_HMT_456 GCA_000482365.1 HMT-785 DSM 23387 Named Cultivated Vaginal (Abundance: Medium) HMT-785 Porphyromonas uenonis DSM 23387 29 2254407 53.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/482/365/GCA_000482365.1_ASM48236v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas uenonis PRJNA200603 1122976 SAMN02440769 ASM48236v1 Scaffold Unknown program v. before 2013-07-04 2013-12-11T13:07:43.650 USA Illumina HiSeq 2000 DOE Joint Genome Institute 99.94 99.92 0 99.9 0.05 GCF_000482365.1 AXVC01 1752 1820 1820 13 7 47 1 Porphyromonas_uenonis_homd_HMT_785 GCA_000485555.1 HMT-754 ATCC 23064 Named Cultivated Oral (Abundance: Medium) HMT-754 Metamycoplasma salivarium ATCC 23064 17 713526 26.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/485/555/GCA_000485555.1_ASM48555v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma salivarium PRJNA183034 1266997 SAMN02441084 ASM48555v1 Contig Unknown program v. before 2013-05-17 2013-12-11T13:14:12.860 Illumina HiSeq 2000 DOE Joint Genome Institute 99.98 100 0.75 95.92 0.57 GCF_000485555.1 AXZE01 1272 1311 1311 2 3 33 1 Metamycoplasma_salivarium_homd_HMT_754 GCA_000485885.1 HMT-550 Z172 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus Z172 3 3018303 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/485/885/GCA_000485885.1_ASM48588v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA222409 1406863 SAMN02370325 ASM48588v1 Complete Genome Celera Assembler v. 7.0 2013-09-30T23:55:06.097 Taiwan blood Illumina; PacBio National Health Research Institutes 99.46 99.51 0.08 100 0.3 GCF_000485885.1 2854 3058 3058 124 16 63 1 Staphylococcus_aureus_homd_HMT_550 GCA_000487975.1 HMT-005 NIPH 512 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-005 Acinetobacter lwoffii NIPH 512 12 3384618 43.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/487/975/GCA_000487975.1_Acin_lwof_CIP64_10_V2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter lwoffii PRJNA219244 981327 SAMN02356578 Acin_lwof_CIP64_10_V2 Scaffold allpaths v. R47584 2013-09-16T08:53:56.536 Unknown Unknown Illumina Broad Institute 147.0x 99.99 99.93 0.27 99.99 0.16 GCF_000487975.1 AYHO01 3235 3357 3357 25 17 79 1 Acinetobacter_lwoffii_homd_HMT_005 GCA_000488855.1 HMT-557 ATCC 33089 Named Cultivated Oral (Abundance: Medium) "HMT-557 Peptostreptococcaceae [G9 ""Eubacterium""] brachy ATCC 33089" 19 1544525 37.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/488/855/GCA_000488855.1_ASM48885v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Gallibacter;s__Gallibacter brachus PRJNA198877 1321814 SAMN02436867 ASM48885v1 Scaffold Velvet v. 1.1.06 2013-12-04T15:03:57.346 oral cavity- mouth Illumina Washington University 258.0x 96.1 0 98.26 0.95 GCF_000488855.1 AXUD01 1385 1437 1437 13 3 35 1 Gallibacter_brachus_homd_HMT_557 GCA_000493795.1 HMT-111 A293 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra A293 49 1680794 28.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/493/795/GCA_000493795.1_PM_A293 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA222594 1408286 SAMN02471847 PM_A293 Scaffold CLC Genomics Workbench v. 5.1.5 2013-12-19T13:43:38.320 United Kingdom abdominal abscess Illumina HiSeq University of Malaya 2000.0x 97.28 98.17 0.61 99.01 0.77 GCF_000493795.1 AXUQ01 1540 1627 1627 39 7 40 1 Parvimonas_micra_homd_HMT_111 GCA_000494875.1 HMT-076 SP1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri SP1 1 2559946 32.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/494/875/GCA_000494875.1_ASM49487v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA184845 1276282 SAMN02603493 ASM49487v1 Complete Genome Newbler v. 2.3 2014-01-30T14:21:33.480 454 Kyung Hee University 84.89 99.73 0 100 0.1 GCF_000494875.1 2474 2589 2589 51 16 47 1 Staphylococcus_warneri_homd_HMT_076 GCA_000496535.1 HMT-686 PKUSS-HG01 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-HG01 12 2002612 36.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/496/535/GCA_000496535.1_Streptococcus_mutans_PKUSS-HG01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA219430 1403829 SAMN02469427 Streptococcus mutans PKUSS-HG0 Contig SOAPdenovo v. 2.01 2013-12-19T13:01:07.170 China: Beijing dental plaque Illumina Beijing Institute of Genomics, Chinese Academy of Sciences 200.0x 99.3 100 0 100 0.11 GCF_000496535.1 AXSW01 1895 1972 1972 30 3 43 1 Streptococcus_mutans_homd_HMT_686 GCA_000496555.1 HMT-686 PKUSS-LG01 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-LG01 14 2001391 36.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/496/555/GCA_000496555.1_Streptococcus_mutans_PKUSS-LG01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA221218 1404260 SAMN02469428 Streptococcus mutans PKUSS-LG0 Contig SOAPdenovo v. 2.01 2013-12-19T13:01:07.273 China: Beijing dental plaque Illumina Institute of Genomics, Chinese Academy of Sciences, Beijing 200.0x 99.3 100 0 100 0.07 GCF_000496555.1 AXSX01 1889 1958 1958 29 3 36 1 Streptococcus_mutans_homd_HMT_686 GCA_000499705.1 HMT-116 CR01 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis CR01 8 2503772 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/499/705/GCA_000499705.1_ScapHOJ_3778_PRJEB1494 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJEB1494 1296619 SAMEA3138827 ScapHOJ_3778_PRJEB1494 Scaffold 2014-11-21T08:59:09.237 HOSPICES CIVILS DE LYON 48.0x 98.9 99.81 0.36 99.98 0.19 GCF_000499705.1 CBUB01 2386 2498 2498 48 4 59 1 GCA_000503875.1 HMT-991 RAAC1_SR1_1 Phylotype Uncultivated Taxonomic Reference (Abundance: Scarce) HMT-991 Absconditicoccaceae [G2] bacterium HMT-991 RAAC1_SR1_1 1 1177760 31.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/503/875/GCA_000503875.1_ASM50387v1 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__UBA5124;s__UBA5124 sp000503875 PRJNA217185 1394709 SAMN00998488 ASM50387v1 Complete Genome idba_ud v. 1.1.0 2012-05-24T19:05:02.753 USA: Rifle, Colorado subsurface aquifer sediment Illumina hiSeq University of California, Berkeley 58.0x 84.33 1.72 97.75 1.04 GCF_000503875.1 2292 2333 2333 1 2 37 1 GCA_000503915.1 HMT-989 RAAC3_TM7_1 Phylotype Uncultivated Taxonomic Reference (Abundance: Scarce) HMT-989 Saccharimonadales [F2 G1] UBA1020 bacterium RAAC3 RAAC3_TM7_1 1 845464 49.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/503/915/GCA_000503915.1_ASM50391v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__UBA1020;g__UBA1020;s__UBA1020 sp000503915 PRJNA217186 1394711 SAMN00998488 ASM50391v1 Complete Genome idba_ud v. 1.1.0 2012-05-24T19:05:02.753 USA: Rifle, Colorado subsurface aquifer sediment Illumina hiSeq University of California, Berkeley 58.0x 65.9 0 99.74 0.17 GCF_000503915.1 916 966 966 5 3 42 0 Saccharimonadales__F2_G1_HMT_986_989 GCA_000503975.1 HMT-619 SJD2 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis SJD2 117 2329548 48.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/503/975/GCA_000503975.1_SJD2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA205615 1211023 SAMN02470968 SJD2 Scaffold SOAPdenovo v. 1.3 2013-12-19T13:34:36.826 China subgingival dental plaque Illumina GAIIx Shanghai Jiao Tong University School of Medicine 122.0x 98.43 99.92 0.31 99.99 0.1 GCF_000503975.1 ASYL01 2025 2090 2090 14 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000504265.1 HMT-659 R7A Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-659 Mesorhizobium japonicum R7A 1 6529530 62.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/504/265/GCA_000504265.1_ASM50426v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium japonicum PRJNA74389 935547 SAMN02597167 ASM50426v1 Scaffold ALLPATHS v. R37654 2014-01-27T12:23:41.220 New Zealand 454-GS-FLX-Titanium; Illumina JGI 98.63 99.92 0.41 100 0 GCF_000504265.1 AZAM01 6236 6356 6356 50 8 61 1 Mesorhizobium_japonicum_homd_HMT_659 GCA_000504685.1 HMT-577 CC92I Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens CC92I 9 2214907 55.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/504/685/GCA_000504685.1_Eike_corr_CC92I_V1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA71555 1073362 SAMN00103446 Eike_corr_CC92I_V1 Scaffold allpaths v. R46499 2011-03-29T23:52:10.170 missing missing Illumina Broad Institute 267.0x 95.64 96.49 0.45 99.99 0.18 GCF_000504685.1 AZGQ01 2082 2161 2161 13 12 53 1 Eikenella_corrodens_homd_HMT_577 GCA_000505785.1 HMT-857 DE442 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-857 Rhodobacter capsulatus DE442 40 3760501 66.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/505/785/GCA_000505785.1_ASM50578v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter;s__Rhodobacter capsulatus_B PRJNA225629 1415160 SAMN02471349 ASM50578v1 Scaffold Velvet v. Sep-2013 2013-12-19T13:34:59.607 USA Illumina MiSeq University of British Columbia 198.0x 93.12 98.18 0.48 99.96 0.52 GCF_000505785.1 AYPR01 3542 3627 3627 27 3 54 1 Rhodobacter_capsulatus_homd_HMT_857 GCA_000506565.2 HMT-857 R121 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-857 Rhodobacter capsulatus R121 36 3760694 66.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/506/565/GCA_000506565.2_ASM50656v2 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter;s__Rhodobacter capsulatus_B PRJNA225632 1415163 SAMN02471351 ASM50656v2 Scaffold Velvet v. Sep-2013 2013-12-19T13:34:59.720 Illumina MiSeq University of British Columbia 212.0x 93.12 97.05 0.48 99.92 0.54 GCF_000506565.2 AYQC01 3534 3619 3619 27 3 54 1 Rhodobacter_capsulatus_homd_HMT_857 GCA_000506685.1 HMT-425 22725 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 22725 117 2230983 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/506/685/GCA_000506685.1_Spspn.str22725_v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA225867 1415759 SAMN02470838 Spspn.str22725_v1.0 Contig GS De Novo Assembler v. 2.8 2013-12-19T13:25:17.533 Russia nasopharynx from a pediatric patient 454 Research Institute of Physical-Chemical Medicine, Moscow, Russia 18.0x 97.23 99.82 0.2 99.99 0.1 GCF_000506685.1 AYRO01 2216 2329 2329 65 3 44 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_000506705.1 HMT-425 1321 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 1321 103 2146559 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/506/705/GCA_000506705.1_Spspn.str1321_v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA225870 1415760 SAMN02470847 Spspn.str1321_v1.0 Contig GS De Novo Assembler v. 2.8 2013-12-19T13:25:18.477 Russia nasopharynx from a pediatric patient 454 Research Institute of Physical-Chemical Medicine, Moscow, Russia 38.0x 98.5 99.82 0.2 99.99 0.12 GCF_000506705.1 AYRP01 2092 2211 2211 72 3 43 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_000506745.1 HMT-425 5247 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 5247 122 2122333 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/506/745/GCA_000506745.1_Spspn.str5247_v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA225872 1415761 SAMN02470842 Spspn.str5247_v1.0 Contig GS De Novo Assembler v. 2.8 2013-12-19T13:25:17.993 Russia nasopharynx from a pediatric patient 454 Research Institute of Physical-Chemical Medicine, Moscow, Russia 17.0x 96.8 99.74 0.2 99.99 0.08 GCF_000506745.1 AYRQ01 2052 2168 2168 67 3 45 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_000507745.1 HMT-758 CC94A Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis CC94A 7 2507043 43.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/507/745/GCA_000507745.1_Stre_sang_CC94A_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA71581 1073373 SAMN01162043 Stre_sang_CC94A_V1 Scaffold allpaths v. R46499 2012-09-05T09:05:35.127 missing missing Illumina Broad Institute 135.0x 96.61 100 0.25 99.99 0.11 GCF_000507745.1 AZJC01 2377 2497 2497 34 21 64 1 Streptococcus_sanguinis_homd_HMT_758 GCA_000507765.1 HMT-411 CC87K Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CC87K 6 2189561 41.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/507/765/GCA_000507765.1_Stre_para_CC87K_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_J PRJNA71579 1073372 SAMN01162070 Stre_para_CC87K_V1 Scaffold allpaths v. R46499 2012-09-05T09:05:36.427 missing missing Illumina Broad Institute 285.0x 94.2 100 0.07 100 0 GCF_000507765.1 AZJD01 2057 2144 2144 35 8 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_000507825.1 HMT-693 CC14M Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens CC14M 35 2986732 43.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/507/825/GCA_000507825.1_Prev_nigr_CC14M_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA71565 1073366 SAMN01162077 Prev_nigr_CC14M_V1 Scaffold allpaths v. R46499 2012-09-05T09:05:36.777 missing missing Illumina Broad Institute 107.0x 98.18 99.65 0.68 99.96 0.19 GCF_000507825.1 AZJH01 2591 2653 2653 9 9 43 1 Prevotella_nigrescens_homd_HMT_693 GCA_000507905.1 HMT-705 CC98A Named Cultivated Oral (Abundance: Low) HMT-705 Hoylesella oralis CC98A 6 2990162 44.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/507/905/GCA_000507905.1_Prev_oral_CC98A_V1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella phocaeensis PRJNA71567 1073367 SAMN01162055 Prev_oral_CC98A_V1 Scaffold allpaths v. R46499 2012-09-05T09:05:35.760 missing missing Illumina Broad Institute 141.0x 97.5 99.29 0.36 99.41 0 GCF_000507905.1 AZJG01 2488 2556 2556 8 9 50 1 Hoylesella_oralis_homd_HMT_705 GCA_000508285.1 HMT-343 NBRC 15126 = ATCC 27061 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-343 Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 1 6683584 67.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/508/285/GCA_000508285.1_ASM50828v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter;s__Achromobacter xylosoxidans PRJNA209573 1216976 SAMN02641513 ASM50828v1 Complete Genome SOAPdenovo v. 2.0 2014-02-13T12:40:41.363 missing missing Illumina HiSeq 2000 Institute of Microbiology, Chinese Academy of Sciences 150.0x 99.99 99.53 0.58 100 0.13 GCF_000508285.1 6029 6136 6136 32 11 63 1 Achromobacter_xylosoxidans_homd_HMT_343 GCA_000510425.1 HMT-694 ATCC 33099 Named Cultivated Oral (Abundance: Medium) HMT-694 Hornefia nodatum ATCC 33099 29 1829558 38.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/510/425/GCA_000510425.1_EnATCC33099v1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Hornefia;s__Hornefia nodata PRJNA89653 1161902 SAMN00829151 EnATCC33099v1.0 Contig Newbler v. 2.6 2012-03-20T16:18:05.987 454 JCVI 36.0x 98.94 0 98.96 1.6 GCF_000510425.1 AZKM01 1634 1704 1704 27 3 39 1 Hornefia_nodatum_homd_HMT_694 GCA_000511675.1 HMT-827 NBRC 105692 Named Cultivated Pathogen (Abundance: Scarce) HMT-827 Yersinia pestis NBRC 105692 142 4506724 47.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/511/675/GCA_000511675.1_ASM51167v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;s__Yersinia pestis PRJDB274 1218101 SAMD00041801 ASM51167v1 Contig Newbler v. 2.6 2015-10-09T01:00:42.000 not applicable 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 128.0x 99.99 99.87 0.41 100 0.13 GCF_000511675.1 BAUR01 3923 4134 4134 146 3 61 1 Yersinia_pestis_homd_HMT_827 GCA_000511735.1 HMT-787 JCM 6292 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-787 Bacteroides pyogenes JCM 6292 112 3405221 45.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/511/735/GCA_000511735.1_ASM51173v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes PRJDB556 1235809 SAMD00013505 ASM51173v1 Contig Newbler v. 2.8 2014-03-26T08:16:35.446 Ion PGM The University of Tokyo 38.1x 99.96 95.32 0 92.94 1.37 GCF_000511735.1 BAIQ01 3274 3367 3367 29 3 60 1 Bacteroides_pyogenes_homd_HMT_787 GCA_000511755.1 HMT-787 JCM 6294 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-787 Bacteroides pyogenes JCM 6294 107 3404843 45.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/511/755/GCA_000511755.1_ASM51175v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes PRJDB557 1121100 SAMD00016376 ASM51175v1 Contig Newbler v. 2.8 2014-03-26T08:16:35.373 Ion PGM The University of Tokyo 32.9x 99.96 97.24 0 92.12 1.72 GCF_000511755.1 BAIR01 3323 3417 3417 29 3 61 1 Bacteroides_pyogenes_homd_HMT_787 GCA_000511775.1 HMT-787 JCM 10003 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-787 Bacteroides pyogenes JCM 10003 95 3379354 46.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/511/775/GCA_000511775.1_ASM51177v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes_A PRJDB560 1235813 SAMD00016596 ASM51177v1 Contig Newbler v. 2.8 2014-03-26T08:16:35.580 Ion PGM The University of Tokyo 36.8x 99.96 96.04 0.19 95.97 2.76 GCF_000511775.1 BAIU01 3292 3381 3381 30 3 55 1 Bacteroides_pyogenes_homd_HMT_787 GCA_000512995.1 HMT-083 MSX33 Unnamed Cultivated Oral (Abundance: Medium) HMT-083 Lachnoanaerobaculum sp. HMT-083 MSX33 99 2871049 36.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/512/995/GCA_000512995.1_LspMSX33v1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum sp000296385 PRJNA165899 936596 SAMN02597440 LspMSX33v1.0 Contig Newbler v. 2.6 2014-01-27T12:59:06.633 Illumina JCVI 91.0x 99.37 0 98.2 0 GCF_000512995.1 AZXX01 2617 2683 2683 17 2 46 1 Lachnoanaerobaculum_sp_HMT_083_homd_HMT_083 GCA_000516535.1 HMT-845 DSM 19756 Named Cultivated Oral (Abundance: Medium) HMT-845 Pseudoleptotrichia goodfellowii DSM 19756 1 2281162 31.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/516/535/GCA_000516535.1_ASM51653v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Pseudoleptotrichia;s__Pseudoleptotrichia goodfellowii PRJNA43669 714315 SAMN02597279 ASM51653v1 Scaffold Unknown program v. before 2010-01-29 2014-01-27T12:23:50.650 Germany 454-GS-FLX-Titanium; Illumina DOE Joint Genome Institute 99.98 100 1.14 99.97 0.59 GCF_000516535.1 AZXW01 2235 2306 2306 22 8 40 1 Pseudoleptotrichia_goodfellowii_homd_HMT_845 GCA_000517765.1 HMT-071 BS29a Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus BS29a 26 1937191 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/517/765/GCA_000517765.1_SspBS29av1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA165933 1161415 SAMN02597443 SspBS29av1.0 Contig Newbler v. 2.6 2014-01-27T12:59:07.647 Illumina JCVI 88.0x 99.87 0.2 99.99 0.05 GCF_000517765.1 AZYV01 1827 1903 1903 43 3 29 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000517765.1 HMT-071 BS29a Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus BS29a 26 1937191 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/517/765/GCA_000517765.1_SspBS29av1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA165933 1161415 SAMN02597443 SspBS29av1.0 Contig Newbler v. 2.6 2014-01-27T12:59:07.647 Illumina JCVI 88.0x 99.87 0.2 99.99 0.05 GCF_000517765.1 AZYV01 1827 1903 1903 43 3 29 1 Streptococcus_oralis_HMT_071_398_707 GCA_000517785.1 HMT-887 AS16 Named Cultivated Oral (Abundance: Scarce) HMT-887 Veillonella denticariosi AS16 22 1946140 43.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/517/785/GCA_000517785.1_VspAS16v1.0 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella denticariosi PRJNA165949 936589 SAMN02597445 VspAS16v1.0 Contig Newbler v. 2.6 2014-01-27T12:59:08.067 Illumina JCVI 85.0x 100 0 99.99 0.13 GCF_000517785.1 AZYX01 1747 1800 1800 18 2 32 1 Veillonella_denticariosi_homd_HMT_887 GCA_000517825.1 HMT-469 ICM33 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica ICM33 110 3192877 40.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/517/825/GCA_000517825.1_PspICM33v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA165919 1161412 SAMN02597447 PspICM33v1.0 Contig SPAdes v. 2.0 2014-01-27T12:59:08.210 Illumina JCVI 81.0x 99.32 0 99.96 0.03 GCF_000517825.1 JACD01 2524 2582 2582 10 3 44 1 Prevotella_melaninogenica_homd_HMT_469 GCA_000517885.1 HMT-921 FSL R5-808 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-921 Paenibacillus glucanolyticus FSL R5-808 89 6448388 48.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/517/885/GCA_000517885.1_ASM51788v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus glucanolyticus PRJNA173824 1227076 SAMN02597348 ASM51788v1 Contig Velvet v. Dec-2011 2014-01-27T12:59:00.673 USA pasteurized milk Illumina HiSeq Cornell University 40.0x 99.85 0.16 100 0.56 GCF_000517885.1 ASPT01 5931 6080 6080 71 4 73 1 Paenibacillus_glucanolyticus_homd_HMT_921 GCA_000518545.1 HMT-583 ATCC 51272 Named Cultivated Oral (Abundance: Scarce) HMT-583 Hallella dentalis ATCC 51272 58 3266753 56.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/518/545/GCA_000518545.1_ASM51854v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella seregens PRJNA204116 1336250 SAMN02584977 ASM51854v1 Scaffold Unknown program v. before 2013-10-16 2014-01-15T11:51:46.113 missing Illumina HiSeq 2000 DOE Joint Genome Institute 99.98 99.32 0 99.96 0.17 GCF_000518545.1 JADU01 2534 2597 2597 4 6 52 1 Hallella_dentalis_homd_HMT_583 GCA_000519165.1 HMT-643 ATCC 25611 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia ATCC 25611 22 2573247 43.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/519/165/GCA_000519165.1_ASM51916v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA169798 1122984 SAMN02584920 ASM51916v1 Scaffold Velvet v. 1.1.04; ALLPATHS v. R41043 2014-01-15T11:51:40.656 missing Illumina DOE Joint Genome Institute 99.99 99.32 0 99.93 0.04 GCF_000519165.1 JAEZ01 2178 2239 2239 11 5 44 1 Prevotella_intermedia_homd_HMT_643 GCA_000520055.1 HMT-574 RM13516 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-574 Escherichia coli RM13516 3 5559008 50.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/520/055/GCA_000520055.1_ASM52005v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli PRJNA178650 1248915 SAMN02641384 ASM52005v1 Complete Genome Newbler v. v2.3; Velvet v. v1.0.13; Geneious v. v5.1 2014-02-13T10:20:18.913 Belgium feces 454; Illumina; PacBio USDA, ARS, WRRC, PSM 98.41 99.62 0.59 100 0.49 GCF_000520055.1 5334 5744 5744 286 22 101 1 Escherichia_coli_homd_HMT_574 GCA_000522565.1 HMT-686 B05Sm11 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B05Sm11 53 2036366 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/522/565/GCA_000522565.1_out_k25_n4_samp01-contigs.fa d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA173247 1225187 SAMN02641534 out__k25_n4_samp01-contigs.fa Contig ABySS v. 1.2.7 2014-02-13T12:40:43.140 USA oral cavity Illumina HiSeq New York University College of Dentistry 100.0x 99.14 100 3.75 100 3.22 GCF_000522565.1 ALYO01 1904 1999 1999 26 12 56 1 Streptococcus_mutans_homd_HMT_686 GCA_000522585.1 HMT-686 B13Sm1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B13Sm1 46 2151929 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/522/585/GCA_000522585.1_out_k45_n4_samp02-contigs.fa d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA173248 1225188 SAMN02641535 out__k45_n4_samp02-contigs.fa Contig ABySS v. 1.2.7 2014-02-13T12:40:43.237 USA oral cavity Illumina HiSeq New York University College of Dentistry 100.0x 99.28 100 2.43 100 1.93 GCF_000522585.1 ALYP01 2003 2114 2114 28 18 64 1 Streptococcus_mutans_homd_HMT_686 GCA_000522625.1 HMT-686 B084SM-A Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B084SM-A 61 2048211 36.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/522/625/GCA_000522625.1_out_k35_n4_samp04-contigs.fa d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA173250 1225190 SAMN02641537 out__k35_n4_samp04-contigs.fa Contig ABySS v. 1.2.7 2014-02-13T12:40:43.357 USA oral cavity Illumina HiSeq New York University College of Dentistry 100.0x 99.29 100 1.12 100 2.23 GCF_000522625.1 ALYR01 1901 2009 2009 31 18 58 1 Streptococcus_mutans_homd_HMT_686 GCA_000522765.1 HMT-686 B04Sm5 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B04Sm5 81 2077621 37.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/522/765/GCA_000522765.1_out_k25_n4_samp13-contigs.fa d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA173258 1225197 SAMN02641544 out__k25_n4_samp13-contigs.fa Contig ABySS v. 1.2.7 2014-02-13T12:40:43.810 USA oral cavity Illumina HiSeq New York University College of Dentistry 100.0x 99.16 100 1.95 100 3.24 GCF_000522765.1 ALYY01 1907 2019 2019 26 24 61 1 Streptococcus_mutans_homd_HMT_686 GCA_000522845.1 HMT-686 B88SM-A Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B88SM-A 75 2061948 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/522/845/GCA_000522845.1_out_k27_n4_samp17-contigs.fa d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA173262 1225201 SAMN02641548 out__k27_n4_samp17-contigs.fa Contig ABySS v. 1.2.7 2014-02-13T12:40:44.060 USA oral cavity Illumina HiSeq New York University College of Dentistry 100.0x 99.29 100 4.31 100 4.84 GCF_000522845.1 ALZC01 1928 2015 2015 25 9 52 1 Streptococcus_mutans_homd_HMT_686 GCA_000522885.1 HMT-686 B23Sm1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B23Sm1 87 2095411 37.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/522/885/GCA_000522885.1_out_k43_n4_samp19-contigs.fa d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA173265 1225202 SAMN02641550 out__k43_n4_samp19-contigs.fa Contig ABySS v. 1.2.7 2014-02-13T12:40:44.197 USA oral cavity Illumina HiSeq New York University College of Dentistry 100.0x 99.11 100 3 100 4.77 GCF_000522885.1 ALZE01 1963 2062 2062 30 11 57 1 Streptococcus_mutans_homd_HMT_686 GCA_000523555.1 HMT-202 13_3C Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum 13_3C 13 2631404 28.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/523/555/GCA_000523555.1_Fuso_nucl_13_3C_V1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA212676 1357398 SAMN00690715 Fuso_nucl_13_3C_V1 Scaffold allpaths v. R47129 2011-08-06T12:47:08.890 missing missing Illumina Broad Institute 142.0x 92.31 100 0 100 0.59 GCF_000523555.1 JAOZ01 2432 2519 2519 23 16 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_000524215.1 HMT-420 CM1 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis CM1 155 2442599 26.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/524/215/GCA_000524215.1_FspCM1v1.0 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA165905 936561 SAMN02641565 FspCM1v1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:45.370 missing missing Illumina JCVI 74.0x 100 0.16 99.99 0.37 GCF_000524215.1 JANB01 2288 2348 2348 21 5 33 1 Fusobacterium_animalis_homd_HMT_420 GCA_000524235.1 HMT-202 OBRC1 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum OBRC1 87 2497272 26.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/524/235/GCA_000524235.1_FspOBRC1v1.0 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA165911 1032505 SAMN02641567 FspOBRC1v1.0 Contig SPAdes v. 2.0 2014-02-13T12:40:45.507 missing missing Illumina JCVI 90.0x 100 0 99.99 0.38 GCF_000524235.1 JANA01 2428 2494 2494 22 2 41 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_000524255.1 HMT-576 AS20 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus AS20 17 1855240 37.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/524/255/GCA_000524255.1_SspAS20v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA165935 936578 SAMN02641574 SspAS20v1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:46.617 missing missing Illumina JCVI 86.0x 99 0 99.9 0.13 GCF_000524255.1 JANS01 1776 1851 1851 34 3 37 1 Streptococcus_constellatus_homd_HMT_576 GCA_000524275.1 HMT-071 BS21 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus BS21 24 1859121 41.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/524/275/GCA_000524275.1_SspBS21v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA165937 1161414 SAMN02641575 SspBS21v1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:46.883 missing missing Illumina JCVI 86.0x 99.87 0.2 99.99 0.05 GCF_000524275.1 JANT01 1758 1840 1840 38 3 40 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000524275.1 HMT-071 BS21 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus BS21 24 1859121 41.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/524/275/GCA_000524275.1_SspBS21v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA165937 1161414 SAMN02641575 SspBS21v1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:46.883 missing missing Illumina JCVI 86.0x 99.87 0.2 99.99 0.05 GCF_000524275.1 JANT01 1758 1840 1840 38 3 40 1 Streptococcus_oralis_HMT_071_398_707 GCA_000524295.1 HMT-095 MSX8B Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-095 Shuttleworthia satelles MSX8B 38 2102620 51.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/524/295/GCA_000524295.1_SspMSX8Bv1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Shuttleworthia;s__Shuttleworthia satelles PRJNA165923 936574 SAMN02641571 SspMSX8Bv1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:46.093 missing missing Illumina JCVI 81.0x 98.74 0.29 97.85 0.06 GCF_000524295.1 JAQT01 1845 1909 1909 16 2 45 1 Shuttleworthia_satelles_homd_HMT_095 GCA_000524335.1 HMT-038 MSTE5 Named Cultivated Oral (Abundance: Scarce) HMT-038 Olsenella uli MSTE5 14 2153240 64.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/524/335/GCA_000524335.1_OulMSTE5v1.0 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella;s__Olsenella uli PRJNA165915 1190621 SAMN02641569 OulMSTE5v1.0 Contig SPAdes v. 2.0 2014-02-13T12:40:45.650 missing missing Illumina JCVI 73.0x 99.07 99.19 0 99.92 0.41 GCF_000524335.1 JANC01 1916 1978 1978 13 3 45 1 Olsenella_uli_homd_HMT_038 GCA_000524355.1 HMT-524 ICM51a Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica ICM51a 53 2157029 38.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/524/355/GCA_000524355.1_VspICM51av1.0 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA165917 936591 SAMN02641570 VspICM51av1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:45.730 missing missing Illumina JCVI 85.0x 100 0 100 0.04 GCF_000524355.1 JAPX01 1995 2059 2059 19 4 40 1 Veillonella_atypica_homd_HMT_524 GCA_000524395.1 HMT-202 CM22 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum CM22 87 2438137 26.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/524/395/GCA_000524395.1_FspCM22v1.0 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA165909 936563 SAMN02641566 FspCM22v1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:45.440 missing missing Illumina JCVI 85.0x 100 0 99.99 0.5 GCF_000524395.1 JAQC01 2361 2430 2430 29 3 36 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_000525775.1 HMT-042 ATCC 33093 Named Cultivated Oral (Abundance: Medium) HMT-042 Mogibacterium timidum ATCC 33093 30 1806210 44.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/525/775/GCA_000525775.1_MtimATCC33093v1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium timidum PRJNA219678 1401079 SAMN02641586 MtimATCC33093v1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:48.960 missing missing Illumina J. Craig Venter Institute 85.0x 98.58 0 98.08 0.12 GCF_000525775.1 JALU01 1608 1667 1667 15 3 40 1 Mogibacterium_timidum_homd_HMT_042 GCA_000525815.1 HMT-825 FSL F6-684 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-825 Listeria monocytogenes FSL F6-684 34 2845956 37.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/525/815/GCA_000525815.1_LmonocytogenesType d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes PRJNA184060 1273540 SAMN02742052 LmonocytogenesType Contig MIRA v. 3.4.1 2014-05-01T14:21:04.816 IonTorrent Cornell University 46.0x 99.95 97.21 0.27 99.72 2.52 GCF_000525815.1 AODC01 3094 3293 3293 127 9 62 1 Listeria_monocytogenes_homd_HMT_825 GCA_000525935.1 HMT-241 FSL F6-1036 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-241 Brochothrix thermosphacta FSL F6-1036 67 2529115 36.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/525/935/GCA_000525935.1_BthermosphactaTYPE d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta PRJNA182539 1121126 SAMN02641490 BthermosphactaTYPE Contig MIRA v. 3.4.1 2014-02-13T12:40:38.806 missing missing IonTorrent Cornell University 47.0x 99.92 97.15 0.33 89.9 0.31 GCF_000525935.1 AODI01 2844 2975 2975 49 10 71 1 Brochothrix_thermosphacta_homd_HMT_241 GCA_000526055.1 HMT-467 ATCC 35585 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci ATCC 35585" 18 1728669 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/526/055/GCA_000526055.1_EsuATCC35585v1.0 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA53047 888727 SAMN02641587 EsuATCC35585v1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:49.053 missing missing Illumina JCVI 87.0x 100 0.71 99.72 0.12 GCF_000526055.1 JATQ01 1592 1661 1661 24 4 40 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_000526095.1 HMT-071 CM6 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus CM6 27 1921648 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/526/095/GCA_000526095.1_SspCM6v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA165939 936580 SAMN02641576 SspCM6v1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:47.197 missing missing Illumina JCVI 110.0x 99.87 0.2 100 0.02 GCF_000526095.1 JATS01 1845 1934 1934 42 4 42 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000526095.1 HMT-071 CM6 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus CM6 27 1921648 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/526/095/GCA_000526095.1_SspCM6v1.0 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA165939 936580 SAMN02641576 SspCM6v1.0 Contig Celera Assembler v. 6.1 2014-02-13T12:40:47.197 missing missing Illumina JCVI 110.0x 99.87 0.2 100 0.02 GCF_000526095.1 JATS01 1845 1934 1934 42 4 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_000529525.1 HMT-815 JMR01 Named Cultivated Oral (Abundance: Scarce) HMT-815 Methanobrevibacter oralis JMR01 14 2107831 28.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/529/525/GCA_000529525.1_Methanobrevibacter_oralis_JMR01 d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanocatella;s__Methanocatella oralis PRJEB4880 1415626 SAMEA3138857 Methanobrevibacter oralis JMR0 Scaffold 2014-11-21T08:59:11.203 URMITE 36.0x 99.84 96.8 0 90.13 2.59 GCF_000529525.1 CBWS01 2275 2311 2311 3 2 31 0 Methanobrevibacter_oralis_homd_HMT_815 GCA_000542395.1 HMT-128 UCIM6116 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis UCIM6116 47 2554377 33.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/542/395/GCA_000542395.1_Stap_lugd_UCIM6116_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA224001 1409679 SAMN02381740 Stap_lugd_UCIM6116_V1 Scaffold allpaths v. R48275 2013-10-23T13:29:47.660 USA: Irvine, CA blood Illumina Broad Institute 123.0x 99.45 99.61 0 100 0.05 GCF_000542395.1 JBHB01 2391 2517 2517 83 8 34 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_000559965.1 HMT-550 M52055 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus M52055 2 2876258 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/559/965/GCA_000559965.1_Stap_aure_M52055_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA224362 1410732 SAMN02383652 Stap_aure_M52055_V1 Scaffold allpaths v. R48140 2013-10-24T16:09:54.863 USA: Irvine, CA nares Illumina Broad Institute 74.0x 99.93 99.51 0.64 100 0.15 GCF_000559965.1 JDIJ01 2654 2850 2850 117 16 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_000560145.1 HMT-550 W48872 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus W48872 1 2859671 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/560/145/GCA_000560145.1_Stap_aure_W48872_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA224374 1410743 SAMN02383663 Stap_aure_W48872_V1 Scaffold allpaths v. R48140 2013-10-24T16:09:55.496 USA: Irvine, CA nares Illumina Broad Institute 86.0x 99.93 99.51 0.64 100 0.15 GCF_000560145.1 JDIS01 2637 2834 2834 118 16 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_000560365.1 HMT-550 M64191 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus M64191 2 2876914 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/560/365/GCA_000560365.1_Stap_aure_M64191_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA224386 1410755 SAMN02383675 Stap_aure_M64191_V1 Scaffold allpaths v. R48140 2013-10-24T16:09:56.216 USA: Irvine, CA nares Illumina Broad Institute 89.0x 99.93 99.51 0.64 100 0.15 GCF_000560365.1 JDJD01 2656 2853 2853 117 17 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_000560505.1 HMT-550 H81437 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus H81437 2 2872973 32.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/560/505/GCA_000560505.1_Stap_aure_H81437_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA224394 1410763 SAMN02383683 Stap_aure_H81437_V1 Scaffold allpaths v. R48140 2013-10-24T16:09:56.770 USA: Irvine, CA nares Illumina Broad Institute 68.0x 99.93 99.51 0.64 100 0.15 GCF_000560505.1 JDJK01 2653 2848 2848 116 16 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_000561065.1 HMT-550 H21935 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus H21935 2 2872947 32.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/561/065/GCA_000561065.1_Stap_aure_H21935_V1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA224426 1410795 SAMN02383715 Stap_aure_H21935_V1 Scaffold allpaths v. R48140 2013-10-24T16:09:58.623 USA: Irvine, CA nares Illumina Broad Institute 89.0x 99.93 99.51 0.64 100 0.15 GCF_000561065.1 JDKM01 2650 2845 2845 116 16 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_000565015.1 HMT-283 ATCC 51270 Named Cultivated Oral (Abundance: Medium) HMT-283 Porphyromonas catoniae ATCC 51270 25 2040170 50.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/565/015/GCA_000565015.1_PcatATCC51270v1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas catoniae PRJNA52993 887901 SAMN02344579 PcatATCC51270v1.0 Contig Celera Assembler v. 6.1 2013-09-04T11:05:14.870 Illumina Baylor College of Medicine 308.0x 95.05 0 99.86 0.1 GCF_000565015.1 JDFF01 1626 1683 1683 6 4 46 1 Porphyromonas_catoniae_homd_HMT_283 GCA_000568515.1 HMT-559 NBIMC_P1-C3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-559 Afipia broomeae NBIMC_P1-C3 69 4996806 61.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/568/515/GCA_000568515.1_NBIMC_P1-C3 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia;s__Afipia broomeae PRJNA197276 1320554 SAMN02951893 NBIMC_P1-C3 Contig CLC NGS Cell v. 6.0 2014-08-05T08:58:08.650 USA blood Illumina MiSeq FDA 141.0x 100 0.95 99.97 1.12 GCF_000568515.1 AVBM01 4768 4858 4858 32 3 54 1 Afipia_broomeae_homd_HMT_559 GCA_000568595.1 HMT-559 NBIMC_P1-C1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-559 Afipia broomeae NBIMC_P1-C1 90 5133308 61.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/568/595/GCA_000568595.1_NBIMC_P1-C1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia;s__Afipia broomeae PRJNA197274 1320552 SAMN02951891 NBIMC_P1-C1 Contig CLC NGS Cell v. 6.0 2014-08-05T08:58:01.403 USA blood Illumina MiSeq FDA 160.0x 100 1.27 99.89 1.95 GCF_000568595.1 AVBK01 4903 4997 4997 36 3 54 1 Afipia_broomeae_homd_HMT_559 GCA_000568615.1 HMT-559 NBIMC_P1-C2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-559 Afipia broomeae NBIMC_P1-C2 66 4996867 61.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/568/615/GCA_000568615.1_NBIMC_P1-C2 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia;s__Afipia broomeae PRJNA197275 1320553 SAMN02951892 NBIMC_P1-C2 Contig CLC NGS Cell v. 6.0 2014-08-05T08:58:04.750 USA blood Illumina MiSeq FDA 154.0x 100 0.95 99.96 1.14 GCF_000568615.1 AVBL01 4765 4855 4855 32 3 54 1 Afipia_broomeae_homd_HMT_559 GCA_000590475.1 HMT-477 28a24 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-477 Stutzerimonas stutzeri 28a24 1 4731359 60.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/590/475/GCA_000590475.1_ASM59047v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;s__Stutzerimonas stutzeri_D PRJNA240232 316 SAMN02673421 ASM59047v1 Complete Genome HGAP v. 2.0 2014-03-05T14:57:28.196 Israel soil PacBio; Illumina University of Arizona 150.0x 82.45 99.8 0.14 99.99 0.07 GCF_000590475.1 4297 4416 4416 46 12 60 1 Stutzerimonas_stutzeri_homd_HMT_477 GCA_000599605.1 HMT-410 HJM029 Unnamed Cultivated Oral (Abundance: Medium) HMT-410 Prevotella sp. HMT-410 HJM029 150 3023893 45.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/599/605/GCA_000599605.1_HJM029 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp000599605 PRJNA230851 1433844 SAMN02437139 HJM029 Scaffold Velvet v. 1.2.10 2013-12-04T20:12:48.456 China: Shanghai human dental abscess Illumina HiSeq Huashan Hospital, Fudan University 100.0x 98.58 0 99.92 0.07 GCF_000599605.1 AZHT01 2677 2744 2744 9 6 51 1 Prevotella_sp_HMT_410_homd_HMT_410 GCA_000600355.1 HMT-690 B35 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum B35 40 2088497 34.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/600/355/GCA_000600355.1_FNF_B35 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA186622 1226633 SAMN02700144 FNF_B35 Contig Newbler v. MapAsmResearch-04/28/2011 2014-03-25T16:52:16.240 USA: Kansas bovine liver abscess 454 University of Missouri-Columbia 59.0x 98.96 100 0 100 0.12 GCF_000600355.1 AOJP01 1898 1974 1974 18 9 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_000604045.1 HMT-531 HK1651 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HK1651 1 2105503 44.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/604/045/GCA_000604045.1_ASM60404v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA239703 272556 SAMN02673418 ASM60404v1 Complete Genome Phred/Phrap/Consed v. 14 2014-03-05T14:10:43.520 Denmark periodontal plaque Sanger Oklahoma University Health Sciences Center 9.9x 99.1 99.66 0 100 0.12 GCF_000604045.1 1996 2130 2130 60 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_000613325.1 HMT-572 JCM 6290 Named Cultivated Oral (Abundance: Medium) HMT-572 Prevotella veroralis JCM 6290 65 2834450 41.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/325/GCA_000613325.1_ASM61332v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella veroralis PRJDB555 1122993 SAMD00011136 ASM61332v1 Contig Newbler v. 2.8 2014-04-10T13:07:10.040 Ion PGM The University of Tokyo 45.0x 99.94 96.48 0 95 2.36 GCF_000613325.1 BAIP01 2706 2765 2765 8 5 45 1 Prevotella_veroralis_homd_HMT_572 GCA_000613405.1 HMT-600 JCM 12259 Named Cultivated Oral (Abundance: Scarce) HMT-600 Hoylesella enoeca JCM 12259 117 2784020 46.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/405/GCA_000613405.1_ASM61340v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella enoeca PRJDB563 1235815 SAMD00011231 ASM61340v1 Contig Newbler v. 2.8 2014-04-10T13:07:10.303 Ion PGM The University of Tokyo 45.0x 96.24 0 94.92 0.53 GCF_000613405.1 BAIX01 2766 2828 2828 7 3 50 2 Hoylesella_enoeca_homd_HMT_600 GCA_000613445.1 HMT-795 JCM 12083 Named Cultivated Oral (Abundance: Medium) HMT-795 Hoylesella shahii JCM 12083 142 3489881 44.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/445/GCA_000613445.1_ASM61344v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella shahii PRJDB565 1122991 SAMD00012546 ASM61344v1 Contig Newbler v. 2.8 2014-04-10T13:07:10.410 Ion PGM The University of Tokyo 32.0x 99.95 97.4 0.34 92.27 1.07 GCF_000613445.1 BAIZ01 3313 3371 3371 10 3 44 1 Hoylesella_shahii_homd_HMT_795 GCA_000613485.1 HMT-658 JCM 12249 Named Cultivated Oral (Abundance: Medium) HMT-658 Hoylesella loescheii JCM 12249 47 3475255 46.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/485/GCA_000613485.1_ASM61348v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella loescheii PRJDB567 1122985 SAMD00006080 ASM61348v1 Contig Newbler v. 2.8 2014-04-10T13:07:10.510 Ion PGM The University of Tokyo 29.0x 99.96 97.36 0.34 91.1 1.58 GCF_000613485.1 BAJB01 3330 3385 3385 7 3 44 1 Hoylesella_loescheii_homd_HMT_658 GCA_000613505.1 HMT-311 JCM 12252 Named Cultivated Oral (Abundance: High) HMT-311 Segatella oris JCM 12252 94 3077999 43.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/505/GCA_000613505.1_ASM61350v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oris PRJDB568 1122989 SAMD00006051 ASM61350v1 Contig Newbler v. 2.8 2014-04-10T13:07:10.463 Ion PGM The University of Tokyo 37.0x 99.95 96.72 0.68 85.75 2.1 GCF_000613505.1 BAJC01 3005 3068 3068 8 4 50 1 Segatella_oris_homd_HMT_311 GCA_000613565.1 HMT-553 JCM 13447 Named Cultivated Oral (Abundance: Medium) HMT-553 Segatella baroniae JCM 13447 94 3116148 53.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/565/GCA_000613565.1_ASM61356v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella baroniae PRJDB571 1122980 SAMD00009302 ASM61356v1 Contig Newbler v. 2.8 2014-04-10T13:07:10.116 Ion PGM The University of Tokyo 35.0x 99.95 95.33 0.51 86.69 3.21 GCF_000613565.1 BAJF01 3047 3104 3104 6 3 47 1 Segatella_baroniae_homd_HMT_553 GCA_000613585.1 HMT-291 JCM 13449 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola JCM 13449 82 3111749 49.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/585/GCA_000613585.1_ASM61358v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJDB574 1122982 SAMD00003335 ASM61358v1 Contig Newbler v. 2.8 2014-04-10T13:07:12.000 Ion PGM The University of Tokyo 41.0x 99.96 97.02 0.34 95.85 2.84 GCF_000613585.1 BAJG01 2801 2864 2864 8 5 49 1 Prevotella_denticola_homd_HMT_291 GCA_000613625.1 HMT-665 JCM 13450 Named Cultivated Oral (Abundance: Scarce) HMT-665 Hoylesella marshii JCM 13450 80 2518161 47.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/625/GCA_000613625.1_ASM61362v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella marshii PRJDB576 862515 SAMD00009951 ASM61362v1 Contig Newbler v. 2.8 2014-04-10T13:07:11.840 Ion PGM The University of Tokyo 46.0x 99.97 98.73 0.84 94.92 1.21 GCF_000613625.1 BAJI01 2390 2479 2479 39 3 46 1 Hoylesella_marshii_homd_HMT_665 GCA_000613705.1 HMT-785 JCM 13868 Named Cultivated Vaginal (Abundance: Medium) HMT-785 Porphyromonas uenonis JCM 13868 112 2260105 52.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/705/GCA_000613705.1_ASM61370v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas uenonis PRJDB580 1122976 SAMD00011592 ASM61370v1 Contig Newbler v. 2.8 2014-04-10T13:07:11.143 Ion PGM The University of Tokyo 55.0x 99.94 96.95 0 89.62 1.36 GCF_000613705.1 BAJM01 2090 2151 2151 12 3 45 1 Porphyromonas_uenonis_homd_HMT_785 GCA_000613725.1 HMT-303 JCM 14110 Named Cultivated Oral (Abundance: Medium) HMT-303 Hoylesella pleuritidis JCM 14110 49 2560108 44.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/725/GCA_000613725.1_ASM61372v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pleuritidis PRJDB581 1236494 SAMD00012129 ASM61372v1 Contig Newbler v. 2.8 2014-04-10T13:07:11.010 Ion PGM The University of Tokyo 28.0x 97.92 0.17 93.66 2.82 GCF_000613725.1 BAJN01 2348 2403 2403 5 3 46 1 Hoylesella_pleuritidis_homd_HMT_303 GCA_000613765.1 HMT-797 JCM 14753 Named Cultivated Vaginal (Abundance: Medium) HMT-797 Prevotella amnii JCM 14753 159 2372746 36.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/765/GCA_000613765.1_ASM61376v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella amnii PRJDB583 1122979 SAMD00008982 ASM61376v1 Contig Newbler v. 2.8 2014-04-10T13:07:10.903 Ion PGM The University of Tokyo 64.0x 99.97 99.49 0.34 99.93 0.36 GCF_000613765.1 BAJP01 2076 2142 2142 14 3 48 1 Prevotella_amnii_homd_HMT_797 GCA_000613785.1 HMT-288 JCM 14966 Named Cultivated Oral (Abundance: Medium) HMT-288 Segatella oulorum JCM 14966 138 2827758 46.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/785/GCA_000613785.1_ASM61378v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oulorum PRJDB584 1236497 SAMD00009236 ASM61378v1 Contig Newbler v. 2.8 2014-04-10T13:07:10.800 Ion PGM The University of Tokyo 54.0x 99.94 96.32 0.11 95.44 3.12 GCF_000613785.1 BAJQ01 2777 2842 2842 9 3 52 1 Segatella_oulorum_homd_HMT_288 GCA_000613925.1 HMT-298 JCM 15637 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola JCM 15637 55 2949807 41.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/925/GCA_000613925.1_ASM61392v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJDB591 1236504 SAMD00008973 ASM61392v1 Contig Newbler v. 2.8 2014-04-10T13:07:11.296 Ion PGM The University of Tokyo 51.0x 99.93 98.06 0 95.33 0.62 GCF_000613925.1 BAJX01 2598 2668 2668 23 3 43 1 Prevotella_histicola_homd_HMT_298 GCA_000613965.1 HMT-289 JCM 15638 Named Cultivated Oral (Abundance: Medium) HMT-289 Segatella maculosa JCM 15638 133 3296416 47.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/965/GCA_000613965.1_ASM61396v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella maculosa PRJDB593 1122986 SAMD00006259 ASM61396v1 Contig Newbler v. 2.8 2014-04-10T13:07:11.250 Ion PGM The University of Tokyo 39.0x 99.95 97.33 0.51 93.23 1.77 GCF_000613965.1 BAJZ01 3146 3210 3210 7 4 52 1 Segatella_maculosa_homd_HMT_289 GCA_000613985.1 HMT-299 JCM 15639 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis JCM 15639 22 2647472 38.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/613/985/GCA_000613985.1_ASM61398v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJDB594 1122988 SAMD00015843 ASM61398v1 Contig Newbler v. 2.8 2014-04-10T13:07:12.056 Ion PGM The University of Tokyo 49.0x 99.98 99 0.34 96.82 0.25 GCF_000613985.1 BAKD01 2250 2302 2302 5 3 43 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_000614005.1 HMT-798 JCM 15640 Named Cultivated Vaginal (Abundance: Medium) HMT-798 Prevotella timonensis JCM 15640 179 3116396 42.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/614/005/GCA_000614005.1_ASM61400v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella timonensis PRJDB595 1122992 SAMD00009486 ASM61400v1 Contig Newbler v. 2.8 2014-04-10T13:07:12.130 Ion PGM The University of Tokyo 40.0x 99.95 97.59 0 97.87 2.15 GCF_000614005.1 BAKE01 2967 3039 3039 22 2 47 1 Prevotella_timonensis_homd_HMT_798 GCA_000614025.1 HMT-943 JCM 15754 Named Cultivated Oral (Abundance: Medium) HMT-943 Prevotella aurantiaca JCM 15754 148 3002170 38.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/614/025/GCA_000614025.1_ASM61402v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella aurantiaca PRJDB596 1236508 SAMD00012187 ASM61402v1 Contig Newbler v. 2.8 2014-04-10T13:07:12.210 Ion PGM The University of Tokyo 46.0x 98.57 0 99.47 0.97 GCF_000614025.1 BAKF01 2737 2790 2790 7 3 42 1 Prevotella_aurantiaca_homd_HMT_943 GCA_000614105.1 HMT-378 JCM 16134 Named Cultivated Oral (Abundance: Low) HMT-378 Prevotella micans JCM 16134 108 2426740 45.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/614/105/GCA_000614105.1_ASM61410v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella micans PRJDB598 1122987 SAMD00008960 ASM61410v1 Contig Newbler v. 2.8 2014-04-10T13:07:12.316 Ion PGM The University of Tokyo 53.0x 99.95 96.4 0 91.94 2.65 GCF_000614105.1 BAKH01 2270 2321 2321 4 3 43 1 Prevotella_micans_homd_HMT_378 GCA_000614205.1 HMT-781 JCM 17484 Named Cultivated Oral (Abundance: Medium) HMT-781 Hoylesella saccharolytica JCM 17484 82 2975513 43.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/614/205/GCA_000614205.1_ASM61420v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella saccharolytica PRJDB604 1236516 SAMD00006087 ASM61420v1 Contig Newbler v. 2.8 2014-04-10T13:07:12.640 Ion PGM The University of Tokyo 48.0x 98.5 0 93.75 0.68 GCF_000614205.1 BAKN01 2730 2788 2788 6 3 48 1 Hoylesella_saccharolytica_homd_HMT_781 GCA_000614245.1 HMT-782 JCM 17724 Named Cultivated Oral (Abundance: Low) HMT-782 Prevotella fusca JCM 17724 116 3173817 43.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/614/245/GCA_000614245.1_ASM61424v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella fusca PRJDB605 1236517 SAMD00011176 ASM61424v1 Contig Newbler v. 2.8 2014-04-10T13:07:12.696 Ion PGM The University of Tokyo 38.0x 99.96 97.31 0 89.58 3.42 GCF_000614245.1 BAKO01 3079 3137 3137 8 4 45 1 Prevotella_fusca_homd_HMT_782 GCA_000614285.1 HMT-885 JCM 17725 Named Cultivated Oral (Abundance: Medium) HMT-885 Prevotella scopos JCM 17725 113 3184425 40.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/614/285/GCA_000614285.1_ASM61428v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella scopos PRJDB606 1236518 SAMD00009021 ASM61428v1 Contig Newbler v. 2.8 2014-04-10T13:07:12.743 Ion PGM The University of Tokyo 44.0x 99.95 97.67 0.17 94.47 2.25 GCF_000614285.1 BAKP01 2855 2919 2919 13 4 46 1 Prevotella_scopos_homd_HMT_885 GCA_000614665.1 HMT-731 JCM 1662 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-731 Klebsiella pneumoniae JCM 1662 201 5470076 57.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/614/665/GCA_000614665.1_ASM61466v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella pneumoniae PRJDB619 1162296 SAMD00009972 ASM61466v1 Contig Newbler v. 2.8 2014-04-10T13:07:13.236 Ion PGM The University of Tokyo 20.0x 99.94 95.81 1.25 91.83 3.9 GCF_000614665.1 BAKZ01 6203 6396 6396 131 3 58 1 Klebsiella_pneumoniae_homd_HMT_731 GCA_000614705.1 HMT-554 JCM 6841 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-554 Acinetobacter baumannii JCM 6841 118 3932397 39.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/614/705/GCA_000614705.1_ASM61470v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii PRJDB620 575584 SAMD00012912 ASM61470v1 Contig Newbler v. 2.8 2014-04-10T13:07:13.306 Ion PGM The University of Tokyo 28.0x 99.97 98.45 0 99.83 1.66 GCF_000614705.1 BALA01 4039 4140 4140 41 3 56 1 Acinetobacter_baumannii_homd_HMT_554 GCA_000615125.1 HMT-615 JCM 1131 Named Cultivated Vaginal (Abundance: High) HMT-615 Lactobacillus gasseri JCM 1131 20 1823247 35.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/615/125/GCA_000615125.1_ASM61512v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus gasseri PRJDB635 324831 SAMD00003499 ASM61512v1 Contig Newbler v. 2.8 2014-04-10T13:07:14.020 Ion PGM The University of Tokyo 58.0x 99.98 99.17 0 99.6 0.55 GCF_000615125.1 BALQ01 1825 1913 1913 33 3 51 1 Lactobacillus_gasseri_homd_HMT_615 GCA_000615165.1 HMT-529 JCM 1132 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-529 Lactobacillus acidophilus JCM 1132 26 1947720 34.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/615/165/GCA_000615165.1_ASM61516v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus PRJDB636 1423717 SAMD00013701 ASM61516v1 Contig Newbler v. 2.8 2014-04-10T13:07:14.076 Ion PGM The University of Tokyo 53.0x 99.98 98.08 0.06 98.8 0.88 GCF_000615165.1 BALR01 1962 2053 2053 39 3 48 1 Lactobacillus_acidophilus_homd_HMT_529 GCA_000615205.1 HMT-568 JCM 1134 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-568 Lacticaseibacillus casei JCM 1134 178 2780019 47.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/615/205/GCA_000615205.1_ASM61520v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus casei PRJDB638 1423732 SAMD00015724 ASM61520v1 Contig Newbler v. 2.8 2014-04-10T13:07:14.133 Ion PGM The University of Tokyo 40.0x 99.97 96.73 0.36 99.12 2.7 GCF_000615205.1 BALS01 3004 3083 3083 29 2 47 1 Lacticaseibacillus_casei_homd_HMT_568 GCA_000615245.1 HMT-749 JCM 1136 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-749 Lacticaseibacillus rhamnosus JCM 1136 63 2934843 46.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/615/245/GCA_000615245.1_ASM61524v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus PRJDB639 1423797 SAMD00000741 ASM61524v1 Contig Newbler v. 2.8 2014-04-10T13:07:14.193 Ion PGM The University of Tokyo 38.0x 99.97 99.12 0 97.64 1.01 GCF_000615245.1 BALT01 2988 3075 3075 33 3 50 1 Lacticaseibacillus_rhamnosus_homd_HMT_749 GCA_000615325.1 HMT-861 JCM 1149 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-861 Lactiplantibacillus plantarum JCM 1149 39 3209456 44.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/615/325/GCA_000615325.1_ASM61532v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum PRJDB641 525338 SAMD00012694 ASM61532v1 Contig Newbler v. 2.8 2014-04-10T13:07:14.330 Ion PGM The University of Tokyo 34.0x 99.97 96.14 2.16 99.99 4.08 GCF_000615325.1 BALV01 3326 3425 3425 44 2 52 1 Lactiplantibacillus_plantarum_homd_HMT_861 GCA_000615405.1 HMT-804 JCM 5805 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-804 Lactococcus lactis JCM 5805 88 2527003 35.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/615/405/GCA_000615405.1_ASM61540v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis PRJDB643 1236944 SAMD00008943 ASM61540v1 Contig Newbler v. 2.8 2014-04-10T13:07:14.443 Ion PGM The University of Tokyo 43.0x 99.97 99.62 0.57 100 1.37 GCF_000615405.1 BALX01 2641 2734 2734 43 4 45 1 Lactococcus_lactis_homd_HMT_804 GCA_000620985.1 HMT-241 DSM 20171 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-241 Brochothrix thermosphacta DSM 20171 29 2503118 36.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/620/985/GCA_000620985.1_ASM62098v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta PRJNA221000 1121126 SAMN02743972 ASM62098v1 Scaffold vpAllpaths v. r46652 2014-05-05T12:54:51.890 Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 99.45 0 99.95 0.27 GCF_000620985.1 JHZM01 2409 2505 2505 50 6 39 1 Brochothrix_thermosphacta_homd_HMT_241 GCA_000622045.1 HMT-690 HUN048 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum HUN048 17 2033981 35.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/622/045/GCA_000622045.1_ASM62204v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA223481 1410656 SAMN02744026 ASM62204v1 Scaffold vpAllpaths v. r46652 2014-05-05T12:57:52.263 Illumina HiSeq 2000 DOE Joint Genome Institute 98.63 100 0 100 0.06 GCF_000622045.1 JHWT01 1872 1940 1940 17 4 46 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_000622145.1 HMT-104 ATCC BAA-599 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-104 Paracoccus yeei ATCC BAA-599 70 4428895 67.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/622/145/GCA_000622145.1_ASM62214v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus yeei PRJNA234040 1446473 SAMN02744027 ASM62214v1 Scaffold vpAllpaths v. r46652 2014-05-05T12:57:55.580 Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 99.55 0.61 99.99 1 GCF_000622145.1 JHWH01 4169 4259 4259 24 7 58 1 Paracoccus_yeei_homd_HMT_104 GCA_000622225.1 HMT-245 ATCC BAA-692 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-245 Roseomonas mucosa ATCC BAA-692 77 4864580 70.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/622/225/GCA_000622225.1_ASM62222v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas mucosa PRJNA234425 1448136 SAMN02744033 ASM62222v1 Scaffold vpAllpaths v. r46652 2014-05-05T12:58:15.833 Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 100 0.5 100 0.47 GCF_000622225.1 JHWD01 4397 4486 4486 24 4 60 1 Roseomonas_mucosa_homd_HMT_245 GCA_000626595.1 HMT-669 510612 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 510612 1 2188020 51.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/626/595/GCA_000626595.1_ASM62659v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA239655 487 SAMN02709031 ASM62659v1 Complete Genome Newbler v. 2.6 2014-03-27T01:38:44.386 China throat swab Sanger dideoxy sequencing; 454 Institute of Pathogen Biology, CAMS 99.07 99.62 0.21 99.98 0 GCF_000626595.1 2067 2181 2181 42 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_000649085.1 HMT-128 VCU150 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis VCU150 28 2536050 33.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/649/085/GCA_000649085.1_gslvcu150v01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA53783 904354 SAMN00116873 gslvcu150v01 Contig Newbler v. 2.3 2010-10-29T12:02:16.340 missing missing 454 GS FLX Titanium J. Craig Venter Institute 30.0x 99.48 99.61 0 100 0.51 GCF_000649085.1 JIBS01 2383 2530 2530 84 4 58 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_000649125.1 HMT-128 VCU148 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis VCU148 56 2514513 33.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/649/125/GCA_000649125.1_gslvcu148v01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA53779 904352 SAMN00116837 gslvcu148v01 Contig Newbler v. 2.3 2010-10-29T11:44:03.713 missing missing 454 GS FLX Titanium J. Craig Venter Institute 24.0x 99.42 99.61 0 100 0.06 GCF_000649125.1 JIBR01 2376 2522 2522 83 4 58 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_000667805.1 HMT-822 H37Rv Named Cultivated Pathogen (Abundance: Scarce) HMT-822 Mycobacterium tuberculosis H37Rv 7 4412618 65.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/667/805/GCA_000667805.1_Myco_tube_H37Rv_V2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium tuberculosis PRJNA218189 83332 SAMN02349330 Myco_tube_H37Rv_V2 Scaffold allpaths v. R44024 2013-09-06T07:06:04.966 Unknown Likely Sputum Illumina Broad Institute 132.0x 99.99 99.94 0 100 0.77 GCF_000667805.1 JLDD01 4112 4205 4205 36 3 53 1 Mycobacterium_tuberculosis_homd_HMT_822 GCA_000684935.1 HMT-753 NBRC 102416 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-753 Cronobacter sakazakii NBRC 102416 100 4548307 56.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/684/935/GCA_000684935.1_ASM68493v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter;s__Cronobacter sakazakii PRJDB277 1218104 SAMD00000350 ASM68493v1 Contig Newbler v. 2.6 2014-04-18T00:00:00.000 NA 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 140.0x 99.99 99.67 0.1 100 0.04 GCF_000684935.1 BAWU01 4239 4421 4421 109 4 68 1 Cronobacter_sakazakii_homd_HMT_753 GCA_000686605.1 HMT-768 DSM 20742 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus DSM 20742 54 2138493 43.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/686/605/GCA_000686605.1_ASM68660v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA234798 1123317 SAMN02743354 ASM68660v1 Scaffold Unknown program v. before 2014-04-08 2014-05-02T17:18:44.013 dental plaque Illumina HiSeq 2000 DOE Joint Genome Institute 99.99 98.88 0 99.99 0.14 GCF_000686605.1 JMLC01 1997 2072 2072 35 5 34 1 Streptococcus_sobrinus_homd_HMT_768 GCA_000688415.1 HMT-060 DSM 44287 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum DSM 44287 13 2261008 55.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/688/415/GCA_000688415.1_ASM68841v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA215660 1121368 SAMN02743909 ASM68841v1 Contig vpAllpaths v. r46652 2014-05-05T12:16:15.460 USA Illumina HiSeq 2000 DOE Joint Genome Institute 99.67 0 99.99 0.02 GCF_000688415.1 JIAH01 2046 2106 2106 6 6 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_000688775.2 HMT-707 VT 162 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis VT 162 1 2041142 41.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/688/775/GCA_000688775.2_ASM68877v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000688775 PRJNA227244 1419814 SAMN02401018 ASM68877v2 Complete Genome Velvet v. 1.2.10 2013-11-10T08:41:42.943 saliva Illumina Institute of Human Microbiology LLC 345.0x 99.87 0.2 100 0.05 1998 2072 2072 38 3 32 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_000688775.2 HMT-707 VT 162 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis VT 162 1 2041142 41.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/688/775/GCA_000688775.2_ASM68877v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000688775 PRJNA227244 1419814 SAMN02401018 ASM68877v2 Complete Genome Velvet v. 1.2.10 2013-11-10T08:41:42.943 saliva Illumina Institute of Human Microbiology LLC 345.0x 99.87 0.2 100 0.05 1998 2072 2072 38 3 32 1 Streptococcus_oralis_HMT_071_398_707 GCA_000691525.1 HMT-692 ATCC 25795 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-692 Mycolicibacterium neoaurum ATCC 25795 42 5468381 66.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/691/525/GCA_000691525.1_ATCC25795_good_1_paired_assembly d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium neoaurum PRJNA244824 1265312 SAMN02729281 ATCC25795_good_1 (paired) asse Contig CLC NGS Cell v. 3.2 Mar-2013 2014-04-17T11:16:55.953 Japan soil Illumina HiSeq East China University of Science and Technology 400.0x 99.99 99.62 1.25 100 0 GCF_000691525.1 JMDW01 5179 5255 5255 24 3 48 1 Mycolicibacterium_neoaurum_homd_HMT_692 GCA_000691645.1 HMT-690 BL Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BL 235 2458422 34.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/691/645/GCA_000691645.1_FnecBLv1.0 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA232676 1441732 SAMN02781279 FnecBLv1.0 Contig Velvet v. 1.2.09 2014-05-15T15:46:09.807 USA liver Illumina MiSeq Newport Laboratories, A Sanofi Company 22.3x 99.65 100 1.12 100 0.29 GCF_000691645.1 JAAC01 2164 2221 2221 14 3 39 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_000691705.1 HMT-690 DAB Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum DAB 254 2520035 34.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/691/705/GCA_000691705.1_FnecDABv1.0 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA232680 1441735 SAMN02781283 FnecDABv1.0 Contig Velvet v. 1.2.09 2014-05-15T15:46:22.757 USA jaw abscess Illumina MiSeq Newport Laboratories, A Sanofi Company 17.9x 98.91 100 0 100 0.28 GCF_000691705.1 JAAF01 2223 2264 2264 15 3 22 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_000691745.1 HMT-690 DJ-2 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum DJ-2 226 2520807 33.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/691/745/GCA_000691745.1_FnecDJ-2v1.0 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA232682 1441737 SAMN02781280 FnecDJ-2v1.0 Contig Velvet v. 1.2.09 2014-05-15T15:46:12.567 USA jaw Illumina MiSeq Newport Laboratories, A Sanofi company 26.0x 99.16 100 0.56 100 0.67 GCF_000691745.1 JAAH01 2235 2297 2297 17 4 40 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_000692055.1 HMT-116 TE8 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis TE8 8 2516639 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/692/055/GCA_000692055.1_Staphylococcus_sp._strain_TE8_genome d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA240948 1472720 SAMN02736786 Staphylococcus sp. strain TE8 Scaffold Newbler v. 2.9 2014-04-24T07:32:33.153 India: New Delhi Healthy human skin surface 454 Institute of Genomics and Integrative Biology 109.0x 99.81 0.36 99.99 0.06 GCF_000692055.1 JMGB01 2442 2555 2555 50 4 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_000698365.1 HMT-641 CGSHiCZ412602 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CGSHiCZ412602 1 1811802 38.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/698/365/GCA_000698365.1_ASM69836v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJNA189674 1295140 SAMN02800345 ASM69836v1 Complete Genome RS_HGAP_Assembly.2 v. 2.1.1 2014-05-27T10:54:04.680 Czech Republic middle ear fluid, child Pacific Biosciences RSII Center for Genomic Science 97 99.67 0 100 0 GCF_000698365.1 1680 1792 1792 31 21 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_000698925.1 HMT-658 ATCC 15930 Named Cultivated Oral (Abundance: Medium) HMT-658 Hoylesella loescheii ATCC 15930 54 3475052 46.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/698/925/GCA_000698925.1_ASM69892v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella loescheii PRJNA198894 1122985 SAMN02840639 ASM69892v1 Scaffold Velvet v. 1.1.06 2014-06-05T18:19:05.600 oral cavity- mouth Illumina Washington University 115.0x 99.98 99.66 0 99.77 0 GCF_000698925.1 JNGW01 2766 2820 2820 7 3 43 1 Hoylesella_loescheii_homd_HMT_658 GCA_000700805.1 HMT-279 KLE 1280 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri KLE 1280 7 2204202 55.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/700/805/GCA_000700805.1_ASM70080v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA64723 997829 SAMN02849569 ASM70080v1 Scaffold Newbler v. MapAsmResearch-10/14/2011 2014-06-10T16:27:13.463 oral Illumina Washington University Genome Center 73.3x 98.87 0 99.95 0.09 GCF_000700805.1 JNOS01 1679 1742 1742 7 6 49 1 Porphyromonas_pasteri_homd_HMT_279 GCA_000701685.1 HMT-757 ATCC 700632 Named Cultivated Oral (Abundance: Medium) HMT-757 Gemella sanguinis ATCC 700632 27 1795494 29.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/701/685/GCA_000701685.1_ASM70168v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella sanguinis PRJNA223062 1408440 SAMN02841211 ASM70168v1 Scaffold Unknown program v. before 2014-03-12 2014-06-06T17:47:16.753 Illumina HiSeq 2000 DOE Joint Genome Institute 98.56 0 100 0.07 GCF_000701685.1 JNJO01 1661 1725 1725 24 3 36 1 Gemella_sanguinis_homd_HMT_757 GCA_000709495.1 HMT-530 hdn-1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes hdn-1 1 2494562 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/709/495/GCA_000709495.1_ASM70949v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA184921 1276648 SAMN03081471 ASM70949v1 Complete Genome CLC Genomics Workbench v. 6.0.1 2014-09-26T10:52:29.813 IonTorrent; SOLiD BAYGEN 82.0x 99.96 99.43 0.03 100 0.65 GCF_000709495.1 2302 2382 2382 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_000711965.1 HMT-645 DSM 43320 Named Cultivated Oral (Abundance: Low) HMT-645 Actinomyces israelii DSM 43320 102 4025772 71.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/711/965/GCA_000711965.1_ASM71196v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces israelii PRJNA215659 1120944 SAMN02745698 ASM71196v1 Scaffold Unknown program v. before 2014-04-21 2014-05-06T01:38:43.280 USA: Rochester, MN Illumina HiSeq 2000 DOE Joint Genome Institute 100 1.78 100 0.84 GCF_000711965.1 JONS01 3303 3379 3379 18 1 56 1 Actinomyces_israelii_homd_HMT_645 GCA_000722675.1 HMT-707 SK141 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SK141 11 1873971 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/722/675/GCA_000722675.1_ASM72267v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_G PRJNA242575 1303 SAMN02836942 ASM72267v1 Contig Newbler v. 1.1.03.24 2014-06-03T12:04:37.940 Denmark: Aarhus dental biofilm 454 Aarhus University 15.0x 94.62 99.75 0.65 99.89 0.1 GCF_000722675.1 JPGA01 1829 1956 1956 55 12 59 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_000722675.1 HMT-707 SK141 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SK141 11 1873971 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/722/675/GCA_000722675.1_ASM72267v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_G PRJNA242575 1303 SAMN02836942 ASM72267v1 Contig Newbler v. 1.1.03.24 2014-06-03T12:04:37.940 Denmark: Aarhus dental biofilm 454 Aarhus University 15.0x 94.62 99.75 0.65 99.89 0.1 GCF_000722675.1 JPGA01 1829 1956 1956 55 12 59 1 Streptococcus_oralis_HMT_071_398_707 GCA_000722685.1 HMT-677 SK667 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK667 15 2136987 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/722/685/GCA_000722685.1_ASM72268v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_M PRJNA242573 28037 SAMN02836937 ASM72268v1 Contig Newbler v. 1.1.03.24 2014-06-03T12:04:37.473 Denmark: Aarhus blood 454 Aarhus University 15.0x 93.23 99.22 0.46 99.99 0.03 GCF_000722685.1 JPFV01 1961 2092 2092 56 17 57 1 Streptococcus_mitis_homd_HMT_677 GCA_000722695.1 HMT-677 SK629 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK629 27 2213700 39.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/722/695/GCA_000722695.1_ASM72269v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_O PRJNA242570 28037 SAMN02836936 ASM72269v1 Contig Newbler v. 1.1.03.24 2014-06-03T12:04:37.370 Denmark: Aarhus buccal mucosa of child 454 Aarhus University 15.0x 93.13 99.77 0.2 99.99 0.13 GCF_000722695.1 JPFU01 2054 2222 2222 100 11 56 1 Streptococcus_mitis_homd_HMT_677 GCA_000722705.1 HMT-677 SK642 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK642 11 1989639 39.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/722/705/GCA_000722705.1_ASM72270v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_P PRJNA242572 28037 SAMN02836938 ASM72270v1 Contig Newbler v. 1.1.03.24 2014-06-03T12:04:37.573 Denmark: Aarhus buccal mucosa of child 454 Aarhus University 15.0x 93.1 99.82 0.2 99.99 0.01 GCF_000722705.1 JPFW01 1827 1935 1935 51 6 50 1 Streptococcus_mitis_homd_HMT_677 GCA_000722755.1 HMT-677 SK578 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK578 16 2080791 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/722/755/GCA_000722755.1_ASM72275v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CM PRJNA242567 28037 SAMN02836940 ASM72275v1 Contig Newbler v. 1.1.03.24 2014-06-03T12:04:37.720 Switzerland: Lausanne blood 454 Aarhus University 15.0x 94.2 99.53 0.83 99.98 0.58 GCF_000722755.1 JPFY01 1954 2067 2067 45 11 56 1 Streptococcus_mitis_homd_HMT_677 GCA_000722765.2 HMT-677 SK637 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK637 1 1942107 40.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/722/765/GCA_000722765.2_ASM72276v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AQ PRJNA242571 28037 SAMN02836939 ASM72276v2 Complete Genome Newbler v. 1.1.03.24 2014-06-03T12:04:37.637 Denmark: Aarhus buccal mucosa of child 454; Sanger Aarhus University 15.0x 94.22 99.68 0.2 99.99 0.13 GCF_000722765.2 1797 1915 1915 45 12 60 1 Streptococcus_mitis_homd_HMT_677 GCA_000722775.1 HMT-677 SK608 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK608 15 2127862 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/722/775/GCA_000722775.1_ASM72277v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AV PRJNA242555 28037 SAMN02836941 ASM72277v1 Contig Newbler v. 1.1.03.24 2014-06-03T12:04:37.847 Denmark: Aarhus Pharynx of child 454 Aarhus University 15.0x 93.9 99.64 0.3 99.94 0.01 GCF_000722775.1 JPFZ01 1947 2014 0 0 12 54 1 Streptococcus_mitis_homd_HMT_677 GCA_000722845.1 HMT-707 SK143 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SK143 7 2043121 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/722/845/GCA_000722845.1_ASM72284v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BV PRJNA242576 1303 SAMN02836943 ASM72284v1 Contig Newbler v. 1.1.03.24 2014-06-03T12:04:38.133 Sweden: Malmo oral cavity 454 Aarhus University 15.0x 95.01 99.82 0.2 99.98 0.03 GCF_000722845.1 JPGB01 1958 2069 2069 39 11 60 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_000722845.1 HMT-707 SK143 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SK143 7 2043121 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/722/845/GCA_000722845.1_ASM72284v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BV PRJNA242576 1303 SAMN02836943 ASM72284v1 Contig Newbler v. 1.1.03.24 2014-06-03T12:04:38.133 Sweden: Malmo oral cavity 454 Aarhus University 15.0x 95.01 99.82 0.2 99.98 0.03 GCF_000722845.1 JPGB01 1958 2069 2069 39 11 60 1 Streptococcus_oralis_HMT_071_398_707 GCA_000723465.1 HMT-962 80/3 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-962 Hominimerdicola aceti 80/3 2 2968500 42.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/723/465/GCA_000723465.1_Rb803 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola;s__Hominimerdicola aceti PRJEA88543 1160721 SAMEA3139031 Rb803 Complete Genome 2014-11-21T08:59:26.563 washed fiber of faecal sample Institute of Food Research 50.0x 98.63 0 99.95 2.83 GCF_000723465.1 2745 2838 2838 24 12 56 1 Hominimerdicola_aceti_homd_HMT_962 GCA_000724065.1 HMT-692 DSM 44074 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-692 Mycolicibacterium neoaurum DSM 44074 10 5536033 66.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/724/065/GCA_000724065.1_PRJEB1060_assembly_1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium neoaurum PRJEB1060 1795 SAMEA3139061 PRJEB1060_assembly_1 Scaffold 2014-11-21T08:59:28.693 ebi 9.0x 99.95 98.96 1.56 100 0.06 GCF_000724065.1 CCDR01 5274 5353 5353 24 5 49 1 Mycolicibacterium_neoaurum_homd_HMT_692 GCA_000724165.1 HMT-677 SK271 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK271 14 1944576 40.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/724/165/GCA_000724165.1_ASM72416v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA242568 28037 SAMN02698681 ASM72416v1 Contig Newbler v. 1.1.03.24 2014-03-24T19:57:16.210 Sweden: Goteborg Human oral cavity 454 Aarhus University 15.0x 95.94 99.74 0.2 99.97 0.39 GCF_000724165.1 JPGW01 1792 1913 1913 44 19 57 1 Streptococcus_mitis_homd_HMT_677 GCA_000724645.1 HMT-411 C1A Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis C1A 79 2039661 42.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/724/645/GCA_000724645.1_ASM72464v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA246621 1318 SAMN02768894 ASM72464v1 Scaffold CLC NGS Cell v. 7.0 2014-05-10T04:00:25.796 Malaysia: Kuala Lumpur sputum Illumina MiSeq University of Malaya 68.7x 94.18 96.83 0.17 99.87 0.03 GCF_000724645.1 JMRV01 1937 2009 2009 34 4 33 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_000724775.3 HMT-614 RB-21 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-614 Lysinibacillus fusiformis RB-21 1 4843789 37.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/724/775/GCA_000724775.3_ASM72477v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus;s__Lysinibacillus fusiformis PRJNA253769 28031 SAMN02892976 ASM72477v3 Complete Genome HGAP v. 2 2014-06-27T04:14:50.140 Malaysia soil PacBio RSII University of Malaya 104.3x 97.3 99.34 1.66 100 0.38 GCF_000724775.3 4742 4985 4985 92 42 108 1 Lysinibacillus_fusiformis_homd_HMT_614 GCA_000730485.1 HMT-530 ATCC 6919 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes ATCC 6919 260 2602215 60.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/730/485/GCA_000730485.1_ASM73048v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA247994 1747 SAMN02782297 ASM73048v1 Contig MIRA v. 3.2.1 2014-05-16T14:23:25.023 missing facial acne Illumina MiSeq University of California, Los Angeles 73.1x 99.97 99.43 2.8 99.99 0.84 GCF_000730485.1 JNHS01 2441 2518 2518 24 4 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_000735365.1 HMT-865 ATCC 33433 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-865 Kluyvera ascorbata ATCC 33433 253 4932354 54.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/735/365/GCA_000735365.1_GKAS_DRAFTv1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera;s__Kluyvera ascorbata PRJNA65517 1006000 SAMN02743264 GKAS_DRAFTv1 Contig Newbler v. 2.5.3 2014-05-02T15:18:36.926 USA:North Carolina human sputum 454 UW-GEL 9.0x 99.28 0.59 100 0.13 GCF_000735365.1 JMPL01 4622 4809 4809 128 3 55 1 Kluyvera_ascorbata_homd_HMT_865 GCA_000736475.1 HMT-076 NGS-ED-1001 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NGS-ED-1001 12 2510278 32.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/736/475/GCA_000736475.1_ASM73647v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA255947 1292 SAMN02937305 ASM73647v1 Contig Spades v. 3.10 2014-07-24T11:54:41.663 United Kingdom: Edinburgh blood Illumina MiSeq Cork Institute of Technology 142.0x 99.65 99.73 0.06 99.99 0.27 GCF_000736475.1 JPOW01 2404 2530 2530 53 11 61 1 Staphylococcus_warneri_homd_HMT_076 GCA_000737145.1 HMT-554 ATCC 19606 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-554 Acinetobacter baumannii ATCC 19606 2 3955221 39.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/737/145/GCA_000737145.1_ASM73714v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii PRJNA243515 575584 SAMN02767370 ASM73714v1 Scaffold Newbler v. 2.6; Velvet v. 1.1.05; AllPaths v. 39750; phredPhrap v. SPS-4.24 2014-05-07T14:45:08.070 unknown unknown 454; Illumina Los Alamos National Laboratory 313.0x 99.99 99.63 0 100 0.12 GCF_000737145.1 JMRY01 3725 3835 3835 41 7 61 1 Acinetobacter_baumannii_homd_HMT_554 GCA_000738165.1 HMT-454 Cj19409 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-454 Corynebacterium macclintockiae Cj19409 44 2356729 61.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/165/GCA_000738165.1_Cj19409 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macclintockiae PRJNA238244 38289 SAMN02641052 Cj19409 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:28.940 USA:Pacific Norwthwest Spine Illumina MiSeq University of Washington 105.0x 87.45 99.55 0 99.95 0.05 GCF_000738165.1 JFCI01 2030 2096 0 6 9 50 1 Corynebacterium_macclintockiae_homd_HMT_454 GCA_000738175.1 HMT-047 Cj47444 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium Cj47444 63 2423808 62.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/175/GCA_000738175.1_Cj47444 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_C PRJNA238244 38289 SAMN02641058 Cj47444 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:29.140 USA:Pacific Norwthwest Pleural fluid Illumina MiSeq University of Washington 131.0x 91.98 99.77 0.06 99.94 0.41 GCF_000738175.1 JFCH01 2085 2157 0 6 12 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_000738185.1 HMT-454 Cj14566 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-454 Corynebacterium macclintockiae Cj14566 49 2331521 61.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/185/GCA_000738185.1_Cj14566 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macclintockiae PRJNA238244 38289 SAMN02641050 Cj14566 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:28.830 USA:Pacific Norwthwest unknown Illumina MiSeq University of Washington 98.0x 87.53 99.55 0 99.8 0.02 GCF_000738185.1 JFCF01 1996 2064 0 6 8 53 1 Corynebacterium_macclintockiae_homd_HMT_454 GCA_000738195.1 HMT-454 Cj16348 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-454 Corynebacterium macclintockiae Cj16348 49 2332166 61.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/195/GCA_000738195.1_Cj16348 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macclintockiae PRJNA238244 38289 SAMN02641051 Cj16348 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:28.897 USA:Pacific Norwthwest unknown Illumina MiSeq University of Washington 113.0x 87.5 100 0 99.81 0.11 GCF_000738195.1 JFCG01 2004 2072 0 6 8 53 1 Corynebacterium_macclintockiae_homd_HMT_454 GCA_000738245.1 HMT-454 Cj30184 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-454 Corynebacterium macclintockiae Cj30184 263 2411235 61.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/245/GCA_000738245.1_Cj30184 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macclintockiae PRJNA238244 38289 SAMN02641054 Cj30184 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:29.027 USA:Pacific Norwthwest unknown Illumina MiSeq University of Washington 55.0x 87.57 99.55 3.3 99.94 1.17 GCF_000738245.1 JFCK01 2088 2153 0 6 3 55 1 Corynebacterium_macclintockiae_homd_HMT_454 GCA_000738255.1 HMT-454 Cj21382 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-454 Corynebacterium macclintockiae Cj21382 80 2269861 61.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/255/GCA_000738255.1_Cj21382 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macclintockiae PRJNA238244 38289 SAMN02641053 Cj21382 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:28.997 USA:Pacific Norwthwest Humeral membrane Illumina MiSeq University of Washington 31.0x 87.63 99.55 0 99.97 0.02 GCF_000738255.1 JFCJ01 1970 2020 0 6 3 40 1 Corynebacterium_macclintockiae_homd_HMT_454 GCA_000738265.1 HMT-454 Cj37130 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-454 Corynebacterium macclintockiae Cj37130 30 2302511 61.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/265/GCA_000738265.1_Cj37130 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macclintockiae PRJNA238244 38289 SAMN02641056 Cj37130 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:29.073 USA:Pacific Norwthwest Knee bursa Illumina MiSeq University of Washington 124.0x 87.41 100 0 99.96 0.02 GCF_000738265.1 JFCQ01 1973 2043 0 6 12 51 1 Corynebacterium_macclintockiae_homd_HMT_454 GCA_000738305.1 HMT-454 Cj38002 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-454 Corynebacterium macclintockiae Cj38002 36 2305843 62.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/305/GCA_000738305.1_Cj38002 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macclintockiae PRJNA238244 38289 SAMN02641057 Cj38002 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:29.113 USA:Pacific Norwthwest unknown Illumina MiSeq University of Washington 121.0x 87.6 99.55 0 99.7 0.06 GCF_000738305.1 JFCP01 1968 2035 0 6 8 52 1 Corynebacterium_macclintockiae_homd_HMT_454 GCA_000738325.1 HMT-454 Cj47446 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-454 Corynebacterium macclintockiae Cj47446 65 2376707 61.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/325/GCA_000738325.1_Cj47446 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macclintockiae PRJNA238244 38289 SAMN02641060 Cj47446 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:29.203 USA:Pacific Norwthwest Decubitus ulcer Illumina MiSeq University of Washington 116.0x 87.89 99.77 0 99.93 0.15 GCF_000738325.1 JFCN01 2026 2096 0 6 12 51 1 Corynebacterium_macclintockiae_homd_HMT_454 GCA_000738335.1 HMT-454 Cj47453 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-454 Corynebacterium macclintockiae Cj47453 41 2385811 61.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/335/GCA_000738335.1_Cj47453 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macclintockiae PRJNA238244 38289 SAMN02641062 Cj47453 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:29.253 USA:Pacific Norwthwest Pleural fluid Illumina MiSeq University of Washington 84.0x 87.59 100 0 99.93 0.06 GCF_000738335.1 JFCL01 2061 2134 0 9 12 51 1 Corynebacterium_macclintockiae_homd_HMT_454 GCA_000738385.1 HMT-047 Cj47445 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium Cj47445 75 2503067 61.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/385/GCA_000738385.1_Cj47445 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium PRJNA238244 38289 SAMN02641059 Cj47445 Scaffold ABySS v. 1.3.5 2014-02-12T17:45:29.166 USA:Pacific Norwthwest blood Illumina MiSeq University of Washington 125.0x 96.85 99.55 0.9 99.89 0.51 GCF_000738385.1 JFCO01 2137 2205 0 7 9 51 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_000738405.1 HMT-047 Cj47447 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium Cj47447 84 2411939 61.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/738/405/GCA_000738405.1_Cj47447 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium PRJNA238244 38289 SAMN02641061 Cj47447 Contig ABySS v. 1.3.5 2014-02-12T17:45:29.230 USA:Pacific Norwthwest blood Illumina MiSeq University of Washington 154.0x 96.7 99.55 0.9 99.73 0.79 GCF_000738405.1 JFCM01 2074 2150 0 7 14 54 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_000739375.1 HMT-858 TK102 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-858 Comamonas testosteroni TK102 1 6062703 61.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/739/375/GCA_000739375.1_ASM73937v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas testosteroni_B PRJNA216961 1392005 SAMN03081477 ASM73937v1 Complete Genome 2014-09-26T10:52:47.623 Shizuoka University 92.86 100 0.93 100 0.43 GCF_000739375.1 5463 5625 5625 35 27 99 1 Comamonas_testosteroni_homd_HMT_858 GCA_000739415.1 HMT-619 HG66 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis HG66 1 2441780 48.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/739/415/GCA_000739415.1_ASM73941v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA245225 837 SAMN02732406 ASM73941v1 Chromosome SMRT analysis v. 2.0.1 2014-04-23T15:45:38.930 unknown PacBio University of Louisville 99.79 99.92 0.31 99.99 0.39 GCF_000739415.1 2048 2130 2130 16 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_000740035.1 HMT-858 NBRC 14951 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-858 Comamonas testosteroni NBRC 14951 65 5406468 61.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/740/035/GCA_000740035.1_ASM74003v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas testosteroni PRJDB2973 285 SAMD00018645 ASM74003v1 Contig newbler v. 2.8 2014-07-17T00:00:00.000 USA:Berkeley 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 118.0x 99.99 99.85 0.46 100 0.1 GCF_000740035.1 BBJZ01 4869 4970 4970 35 3 62 1 Comamonas_testosteroni_homd_HMT_858 GCA_000740455.1 HMT-833 25240 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 25240 1 1941566 41.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/740/455/GCA_000740455.1_ASM74045v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA244569 480 SAMN02870719 ASM74045v1 Complete Genome Newbler v. 2.6; Velvet v. 1.1.05; Allpaths v. 39750; Phrap v. SPS - 4.24 2014-06-24T15:39:34.403 unknown unknown Illumina; 454 Los Alamos National Laboratory 317.0x 99.2 99.73 0.27 100 0.02 GCF_000740455.1 1741 1815 1815 11 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_000740775.1 HMT-316 CCUG 52307 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-316 Haematobacter missouriensis CCUG 52307 136 3958808 64.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/740/775/GCA_000740775.1_ASM74077v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Haematobacter;s__Haematobacter missouriensis PRJNA239788 366616 SAMN02670966 ASM74077v1 Contig SOAPdenovo v. 1.05 2014-03-03T07:15:44.830 USA: Missouri blood Illumina MiSeq Huazhong Agricultural University 278.6x 99.99 99.39 1.01 99.99 0.21 GCF_000740775.1 JFGS01 3798 3877 3877 24 3 51 1 Haematobacter_missouriensis_homd_HMT_316 GCA_000741245.1 HMT-862 LMG 13197 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-862 Bifidobacterium longum LMG 13197 8 2384703 60.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/741/245/GCA_000741245.1_Biflon_sub.lon d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum PRJNA239849 1679 SAMN02673437 Biflon_sub.lon Contig Mira v. 4.0 2014-03-05T15:00:53.990 missing Adult intestine Ion Torrent University of Parma 34.8x 99.98 99.65 0 99.65 0.37 GCF_000741245.1 JGYZ01 1942 2039 2039 13 8 75 1 Bifidobacterium_longum_homd_HMT_862 GCA_000741405.1 HMT-891 LMG 21589 Named Cultivated Vaginal (Abundance: Medium) HMT-891 Bifidobacterium scardovii LMG 21589 34 3141793 64.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/741/405/GCA_000741405.1_Bifsca d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium scardovii PRJNA239864 158787 SAMN02673452 Bifsca Contig Mira v. 4.0 2014-03-05T15:00:55.040 missing Human blood Ion Torrent University of Parma 68.6x 99.99 99.54 2.15 99.96 0.59 GCF_000741405.1 JGZO01 2531 2605 2605 13 3 57 1 Bifidobacterium_scardovii_homd_HMT_891 GCA_000741485.1 HMT-895 LMG 10508 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-895 Bifidobacterium animalis LMG 10508 13 1915007 60.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/741/485/GCA_000741485.1_Bifani_sub.ani d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis PRJNA239836 302912 SAMN02673424 Bifani_sub.ani Contig Mira v. 4.0 2014-03-05T15:00:52.920 missing Rat feces Ion Torrent University of Parma 61.2x 99.98 100 0 99.96 0.55 GCF_000741485.1 JGYM01 1538 1605 1605 8 5 53 1 Bifidobacterium_animalis_homd_HMT_895 GCA_000741775.1 HMT-890 LMG 11597 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-890 Bifidobacterium subtile LMG 11597 27 2790088 60.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/741/775/GCA_000741775.1_Bifsub d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium subtile PRJNA239867 77635 SAMN02673455 Bifsub Contig Mira v. 4.0 2014-03-05T15:00:55.310 missing Sewage Ion Torrent University of Parma 123.7x 99.99 99.35 3.48 98.48 1.13 GCF_000741775.1 JGZR01 2273 2341 2341 17 2 48 1 Bifidobacterium_subtile_homd_HMT_890 GCA_000741825.1 HMT-023 2167 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-023 Delftia acidovorans 2167 1 6777958 66.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/741/825/GCA_000741825.1_ASM74182v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas acidovorans PRJNA244541 80866 SAMN02867546 ASM74182v1 Scaffold Newbler v. 2.6; Velvet v. 1.1.05; AllPaths v. 39750; phredPhrap v. SPS-4.24 2014-06-19T14:52:56.316 unknown unknown 454; Illumina Los Alamos National Laboratory 469.0x 99.99 99.85 0.21 100 0.16 GCF_000741825.1 JOUB01 6022 6130 6130 32 5 70 1 Delftia_acidovorans_homd_HMT_023 GCA_000741965.1 HMT-649 ATCC 23970 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica ATCC 23970 1 2182033 52.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/741/965/GCA_000741965.1_ASM74196v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA244570 546265 SAMN02870721 ASM74196v1 Scaffold Newbler v. 2.6; Velvet v. 1.1.05; AllPaths v. 39750; phredPhrap v. SPS-4.24 2014-06-24T16:10:48.556 unknown unknown 454; Illumina Los Alamos National Laboratory 337.0x 99.98 99.92 0 100 0.14 GCF_000741965.1 JOVI01 1992 2084 2084 20 12 59 1 Neisseria_lactamica_homd_HMT_649 GCA_000742135.1 HMT-731 ATCC 13883 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-731 Klebsiella pneumoniae ATCC 13883 5 5545784 57.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/742/135/GCA_000742135.1_ASM74213v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella pneumoniae PRJNA244567 573 SAMN02870152 ASM74213v1 Scaffold Newbler v. 2.6; Velvet v. 1.1.05; AllPaths v. 39750; phredPhrap v. SPS-4.24 2014-06-23T17:48:19.346 unknown unknown 454; Illumina Los Alamos National Laboratory 560.0x 99.99 100 0.97 100 0.58 GCF_000742135.1 JOOW01 5156 5387 5387 134 19 77 1 Klebsiella_pneumoniae_homd_HMT_731 GCA_000742895.1 HMT-824 Vollum Named Cultivated Pathogen (Abundance: Scarce) HMT-824 Bacillus anthracis Vollum 3 5506189 35.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/742/895/GCA_000742895.1_ASM74289v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis PRJNA243521 261591 SAMN02736982 ASM74289v1 Complete Genome Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 44837; Phrap v. SPS - 4.24 2014-04-24T16:35:42.233 unknown unknown Illumina; 454 Los Alamos National Laboratory 99.99 99.22 0.15 99.99 0.14 GCF_000742895.1 5752 6007 6007 126 33 95 1 Bacillus_anthracis_homd_HMT_824 GCA_000743455.1 HMT-854 ATCC 27511 Named Cultivated Oral (Abundance: Scarce) HMT-854 Ralstonia pickettii ATCC 27511 1 4765599 63.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/743/455/GCA_000743455.1_RPT d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;s__Ralstonia pickettii PRJNA244358 329 SAMN02870864 RPT Scaffold Newbler v. 2.6; Velvet v. 1.1.05; AllPaths v. 39750; phredPhrap v. SPS - 4.24 2014-06-24T18:17:49.713 unknown unknown 454; Illumina Los Alamos National Laboratory 321.0x 99.99 99.94 0.01 99.99 0.01 GCF_000743455.1 JOVL01 4382 4473 4473 32 5 53 1 Ralstonia_pickettii_homd_HMT_854 GCA_000743465.1 HMT-825 FSL F6-684 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-825 Listeria monocytogenes FSL F6-684 1 2852103 38.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/743/465/GCA_000743465.1_LMD d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes PRJNA244568 1273540 SAMN02870153 LMD Scaffold Newbler v. 2.6; Velvet v. 1.1.05; AllPaths v. 39750; phredPhrap v. SPS - 4.24 2014-06-23T18:07:41.216 unknown unknown 454; Illumina Los Alamos National Laboratory 315.0x 99.99 99.45 0.27 100 0.52 GCF_000743465.1 JOOX01 2780 2978 2978 128 11 58 1 Listeria_monocytogenes_homd_HMT_825 GCA_000746485.1 HMT-718 ATCC 33392 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae ATCC 33392 19 2136084 39.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/746/485/GCA_000746485.1_ASM74648v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA66117 888828 SAMN00621707 ASM74648v1 Contig Celera Assembler v. 6.1 2011-05-26T16:55:02.853 skin, finger 454 J. Craig Venter Institute 15.0x 99.99 99.77 0.23 100 1.39 GCF_000746485.1 AFQS01 2002 2126 2126 55 15 53 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_000747315.1 HMT-835 IMMIB RIV-2301 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-835 Corynebacterium mucifaciens IMMIB RIV-2301 2 2328278 65.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/747/315/GCA_000747315.1_ASM74731v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium mucifaciens PRJNA257688 401472 SAMN02953970 ASM74731v1 Complete Genome Newbler v. 2.8 2014-08-07T05:51:08.010 Germany: Bonn blood culture Illumina Bielefeld University 370.5x 98.64 0 99.92 0.47 GCF_000747315.1 2295 2370 2370 9 12 53 1 Corynebacterium_mucifaciens_homd_HMT_835 GCA_000751135.1 HMT-646 na Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae na 33 2128528 46.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/751/135/GCA_000751135.1_Kingella_kingae_KK247_ d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB6199 504 SAMEA2618372 Kingella kingae KK247* Contig 2014-07-01T08:05:57.690 URMITE 123.0x 98.44 98.87 0.68 100 0.48 GCF_000751135.1 CCJT01 2169 2240 2240 16 6 48 1 Kingella_kingae_homd_HMT_646 GCA_000751855.1 HMT-405 Pharynx Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis Pharynx 78 2130549 45.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/751/855/GCA_000751855.1_Kingella_negevensis d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJEB6958 1522312 SAMEA2697679 Kingella negevensis Contig 2014-08-13T08:06:00.247 URMITE 126.0x 91.76 0.23 100 0.04 GCF_000751855.1 CCNJ01 2114 2189 2189 16 7 51 1 Kingella_negevensis_homd_HMT_405 GCA_000755145.1 HMT-743 OMZ 758 Named Cultivated Oral (Abundance: Scarce) HMT-743 Treponema putidum OMZ 758 2 2800562 37.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/755/145/GCA_000755145.1_ASM75514v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B putidum PRJNA257943 221027 SAMN02980915 ASM75514v1 Complete Genome 454 Newbler v. 2.7 2014-08-11T00:37:20.767 Switzerland periodontitis lesion 454 The University of Hong Kong 54.0x 99.97 98.39 0 99.9 0.45 GCF_000755145.1 2631 2700 2700 17 6 45 1 Treponema_putidum_homd_HMT_743 GCA_000755185.1 HMT-031 ATCC 6931 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum ATCC 6931 1 2471920 58.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/755/185/GCA_000755185.1_ASM75518v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA244546 1487956 SAMN02902856 ASM75518v1 Complete Genome Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 44837; Phrap v. SPS - 4.24 2014-07-03T17:30:19.940 unknown unknown Illumina Los Alamos National Laboratory 309.0x 100 0 100 0.06 GCF_000755185.1 2117 2202 2202 14 15 55 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_000758765.1 HMT-859 S7-1-13 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-859 Anaerococcus lactolyticus S7-1-13 44 1936866 34.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/758/765/GCA_000758765.1_04_NF40_HMP1630v01 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus lactolyticus PRJNA187461 1284686 SAMN02850926 04_NF40_HMP1630v01 Contig Celera v. 7.0 2014-06-11T15:29:53.610 missing vagina Illumina JCVI 72.4x 97.57 99.39 0.61 99.41 0.2 GCF_000758765.1 JRMW01 1792 1868 1868 28 4 43 1 Anaerococcus_lactolyticus_homd_HMT_859 GCA_000759045.1 HMT-556 DNF00188 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-556 Prevotella bivia DNF00188 158 2527024 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/045/GCA_000759045.1_04_NF_x40_HMP1651v01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella bivia PRJNA187523 1287476 SAMN02850947 04_NF_x40_HMP1651v01 Contig Newbler v. 2.9 2014-06-11T15:29:55.043 missing vagina Illumina JCVI 69.8x 98.91 99.66 0.54 99.99 0.06 GCF_000759045.1 JRNF01 2143 2193 2193 7 3 39 1 Prevotella_bivia_homd_HMT_556 GCA_000759055.1 HMT-184 DNF00037 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-184 Corynebacterium tuscaniense DNF00037 82 2227780 59.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/055/GCA_000759055.1_04_NF40_HMP2129v01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuscaniense PRJNA219660 1401064 SAMN02850961 04_NF40_HMP2129v01 Contig Newbler v. 2.9 2014-06-11T15:29:56.257 missing vagina Illumina J. Craig Venter Institute 70.8x 98.19 98.33 0 100 0.08 GCF_000759055.1 JRNG01 2083 2137 2137 7 3 43 1 Corynebacterium_tuscaniense_homd_HMT_184 GCA_000759075.1 HMT-298 DNF00424 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola DNF00424 109 3059956 41.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/075/GCA_000759075.1_04_NF40_HMP2132v01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA219666 1236504 SAMN02850967 04_NF40_HMP2132v01 Contig SPAdes v. 3.0.0 2014-06-11T15:29:56.660 missing vagina Illumina J. Craig Venter Institute 80.6x 97.88 99.32 0.42 99.79 0.13 GCF_000759075.1 JRNJ01 2532 2611 2611 24 6 48 1 Prevotella_histicola_homd_HMT_298 GCA_000759125.1 HMT-120 DNF00585 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus DNF00585 49 2357406 32.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/125/GCA_000759125.1_04_NF40_HMP2135v01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA219669 1401071 SAMN02850970 04_NF40_HMP2135v01 Contig Newbler v. 2.9 2014-06-11T15:29:56.980 missing vagina Illumina J. Craig Venter Institute 73.5x 97.11 99.62 0.08 99.97 0.01 GCF_000759125.1 JRNK01 2334 2420 2420 66 2 17 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_000759165.1 HMT-556 DNF00650 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-556 Prevotella bivia DNF00650 173 2408181 39.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/165/GCA_000759165.1_04_NF40_HMP2136v01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella bivia PRJNA219670 1401072 SAMN02850971 04_NF40_HMP2136v01 Contig Newbler v. 2.9 2014-06-11T15:29:57.103 missing vagina Illumina J. Craig Venter Institute 81.1x 98.94 99.66 0 99.99 0.06 GCF_000759165.1 JRNM01 2060 2117 2117 12 3 41 1 Prevotella_bivia_homd_HMT_556 GCA_000759185.1 HMT-562 DNF00853 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-562 Hoylesella buccalis DNF00853 97 2954213 45.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/185/GCA_000759185.1_04_NF40_HMP2137v01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp000479005 PRJNA219672 1401074 SAMN02850973 04_NF40_HMP2137v01 Contig SPAdes v. 3.0.0 2014-06-11T15:29:57.293 missing vagina Illumina J. Craig Venter Institute 78.7x 93.85 99.29 0 99.76 0.06 GCF_000759185.1 JRNN01 2512 2585 2585 18 7 47 1 Hoylesella_buccalis_homd_HMT_562 GCA_000759205.1 HMT-291 DNF00960 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola DNF00960 126 3050207 49.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/205/GCA_000759205.1_04_NF40_HMP2139v01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA219676 1401077 SAMN02850976 04_NF40_HMP2139v01 Contig Newbler v. 2.9 2014-06-11T15:29:57.567 missing vagina Illumina J. Craig Venter Institute 77.7x 98.3 99.32 0.11 99.99 0.98 GCF_000759205.1 JRNO01 2488 2544 2544 9 3 43 1 Prevotella_denticola_homd_HMT_291 GCA_000759245.1 HMT-556 DNF00320 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-556 Prevotella bivia DNF00320 179 2584224 40.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/245/GCA_000759245.1_04_NF40_HMP647v01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella bivia PRJNA219665 1401068 SAMN02850966 04_NF40_HMP647v01 Contig Newbler v. 2.9 2014-06-11T15:29:56.593 missing vagina Illumina J. Craig Venter Institute 70.6x 98.76 99.66 0.61 100 0.07 GCF_000759245.1 JRNQ01 2203 2264 2264 17 3 40 1 Prevotella_bivia_homd_HMT_556 GCA_000759265.1 HMT-562 DNF00985 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-562 Hoylesella buccalis DNF00985 102 2756480 45.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/265/GCA_000759265.1_04_NF40_HMP2140v01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp000479005 PRJNA219677 1401078 SAMN02850977 04_NF40_HMP2140v01 Contig Newbler v. 2.9 2014-06-11T15:29:57.653 missing vagina Illumina J. Craig Venter Institute 78.9x 93.59 99.29 0 99.94 0.04 GCF_000759265.1 JRNP01 2298 2355 2355 6 3 47 1 Hoylesella_buccalis_homd_HMT_562 GCA_000759315.1 HMT-797 DNF00058 Named Cultivated Vaginal (Abundance: Medium) HMT-797 Prevotella amnii DNF00058 179 2450252 36.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/315/GCA_000759315.1_04_NF40_HMP9302v01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella amnii PRJNA219662 1401066 SAMN02850963 04_NF40_HMP9302v01 Contig Newbler v. 2.9 2014-06-11T15:29:56.407 missing vagina Illumina J. Craig Venter Institute 82.1x 98.46 99.49 0.11 99.56 0.26 GCF_000759315.1 JRNU01 2081 2136 2136 11 3 40 1 Prevotella_amnii_homd_HMT_797 GCA_000759555.1 HMT-601 SEI Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis SEI 2 2538314 32.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/759/555/GCA_000759555.1_ASM75955v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA244351 1282 SAMN02928813 ASM75955v1 Complete Genome Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 39750; Phrap v. SPS - 4.24 2014-07-21T14:29:38.480 unknown clinical isolate Illumina; 454 Los Alamos National Laboratory 336.0x 99.36 99.81 0 99.98 0.05 GCF_000759555.1 2345 2510 2510 86 19 59 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_000763245.3 HMT-536 CCBH4851 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-536 Pseudomonas aeruginosa CCBH4851 1 6834257 66.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/763/245/GCA_000763245.3_ASM76324v3 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa PRJNA257157 287 SAMN02947975 ASM76324v3 Complete Genome Canu v. 1.5; A5Miseq v. Feb-2015 2014-07-31T08:39:23.706 Brazil catheter tip PacBio; Illumina MiSeq Instituto Oswaldo Cruz 78.0x 99.4 99.68 0.9 100 1.22 GCF_000763245.3 6309 6486 6486 90 12 74 1 Pseudomonas_aeruginosa_homd_HMT_536 GCA_000763635.1 HMT-476 C6A Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava C6A 34 2138952 49.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/763/635/GCA_000763635.1_ASM76363v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA246622 488 SAMN02996611 ASM76363v1 Contig CLC Genomic Workbench v. MAY-2014 2014-08-18T05:45:23.110 Malaysia sputum Illumina MiSeq University of Malaya 58.4x 100 0 100 0.01 GCF_000763635.1 JQHF01 1983 2077 2077 37 3 53 1 Neisseria_subflava_homd_HMT_476 GCA_000763685.1 HMT-188 C6B Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria C6B 38 2644345 56.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/763/685/GCA_000763685.1_ASM76368v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA246623 172042 SAMN02996612 ASM76368v1 Contig CLC Genomic Workbench v. MAY-2014 2014-08-18T05:48:42.910 Malaysia sputum Illumina MiSeq University of Malaya 97.5x 97.51 98.34 0 100 0.04 GCF_000763685.1 JQHE01 2316 2384 2384 13 4 50 1 Rothia_aeria_homd_HMT_188 GCA_000763705.1 HMT-120 C10D Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus C10D 42 2440251 32.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/763/705/GCA_000763705.1_ASM76370v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA246629 1283 SAMN02996615 ASM76370v1 Contig CLC Genomic Workbench v. MAY-2014 2014-08-18T05:55:18.080 Malaysia sputum Illumina MiSeq Universiti of Malaya 71.9x 97.91 99.62 0.08 99.99 0.03 GCF_000763705.1 JQHB01 2351 2490 2490 73 6 59 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_000763725.1 HMT-120 C10F Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus C10F 40 2458301 32.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/763/725/GCA_000763725.1_ASM76372v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA246630 1283 SAMN02996616 ASM76372v1 Contig CLC Genomic Workbench v. MAY-2014 2014-08-18T05:57:30.923 Malaysia sputum Illumina MiSeq Universiti of Malaya 65.2x 97.91 99.62 0.08 99.99 0.11 GCF_000763725.1 JQHA01 2371 2511 2511 74 6 59 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_000763765.1 HMT-188 C6D Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria C6D 31 2639435 56.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/763/765/GCA_000763765.1_ASM76376v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA246626 172042 SAMN02954007 ASM76376v1 Contig CLC Genomic Workbench v. MAY-2014 2014-08-07T09:51:48.990 Malaysia: Kuala Lumpur sputum Illumina MiSeq University of Malaya 59.4x 97.55 98.34 0 100 0.03 GCF_000763765.1 JPVS01 2319 2388 2388 13 4 51 1 Rothia_aeria_homd_HMT_188 GCA_000766665.1 HMT-833 25239 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 25239 1 1887974 41.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/766/665/GCA_000766665.1_ASM76666v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA235932 480 SAMN02595593 ASM76666v1 Complete Genome HGAP v. 1.4; Quiver 2014-01-24T00:05:27.563 PacBio RS II Griffith University 211.0x 99.25 99.72 0.28 100 0.01 GCF_000766665.1 1702 1775 1775 10 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_000767075.1 HMT-641 Hi375 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae Hi375 1 1850897 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/767/075/GCA_000767075.1_ASM76707v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA263041 727 SAMN03093440 ASM76707v1 Complete Genome RS_HGAP_Assembly.3 v. 3 2014-10-03T14:53:46.640 Finland middle ear PacBio Drexel University College of Medicine 66.0x 99.35 99.77 0 100 0 GCF_000767075.1 1738 1850 1850 33 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_000767835.1 HMT-767 HKU4 Named Cultivated Oral (Abundance: Scarce) HMT-767 Streptococcus sinensis HKU4 116 2061843 42.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/767/835/GCA_000767835.1_ASM76783v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sinensis PRJNA251999 176090 SAMN02848449 ASM76783v1 Contig SOAPec v. 2 2014-06-09T14:45:04.770 Hong Kong blood culture of a patient with infective endocarditis Illumina HiSeq The University of Hong Kong 10.0x 99.63 0.12 99.99 1.02 GCF_000767835.1 JPEN01 1938 2022 2022 33 3 47 1 Streptococcus_sinensis_homd_HMT_767 GCA_000770985.1 HMT-891 DSM 13734 Named Cultivated Vaginal (Abundance: Medium) HMT-891 Bifidobacterium scardovii DSM 13734 136 3146618 64.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/770/985/GCA_000770985.1_DSM-13734 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium scardovii PRJNA237576 1150461 SAMN02442005 DSM-13734 Contig SOAPdenovo v. 2.01 2013-12-11T22:08:32.040 Illumina HiSeq Key Laboratory of Dairy BiotecInner Mongolia Agricultural University 278.3x 99.99 100 3.3 99.98 0.97 GCF_000770985.1 JDTN01 2546 2617 2617 13 2 55 1 Bifidobacterium_scardovii_homd_HMT_891 GCA_000771185.1 HMT-890 DSM 20096 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-890 Bifidobacterium subtile DSM 20096 75 2761997 60.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/771/185/GCA_000771185.1_DSM-20096 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium subtile PRJNA237576 1121110 SAMN02442015 DSM-20096 Contig SOAPdenovo v. 2.01 2013-12-11T22:08:32.733 Illunima Hiseq Key Laboratory of Dairy BiotecInner Mongolia Agricultural University 278.3x 99.99 98.98 3.03 98.81 1.07 GCF_000771185.1 JDTX01 2239 2307 2307 17 2 48 1 Bifidobacterium_subtile_homd_HMT_890 GCA_000771305.1 HMT-889 DSM 20213 Named Cultivated Vaginal (Abundance: Medium) HMT-889 Bifidobacterium breve DSM 20213 29 2257131 58.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/771/305/GCA_000771305.1_DSM-20213 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium breve PRJNA237576 518634 SAMN02442021 DSM-20213 Contig SOAPdenovo v. 2.01 2013-12-11T22:08:33.106 Illunima Hiseq Key Laboratory of Dairy BiotecInner Mongolia Agricultural University 278.3x 99.99 100 0 99.96 0.1 GCF_000771305.1 JDUD01 1923 1990 1990 12 2 52 1 Bifidobacterium_breve_homd_HMT_889 GCA_000771725.1 HMT-588 DSM 20436 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-588 Bifidobacterium dentium DSM 20436 32 2614783 58.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/771/725/GCA_000771725.1_DSM-20436 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium PRJNA237576 1150423 SAMN02442045 DSM-20436 Contig SOAPdenovo v. 2.01 2013-12-11T22:08:34.580 Illunima Miseq Key Laboratory of Dairy BiotecInner Mongolia Agricultural University 278.3x 99.99 100 0 99.98 0.58 GCF_000771725.1 JDUY01 2126 2198 2198 9 6 56 1 Bifidobacterium_dentium_homd_HMT_588 GCA_000775415.1 HMT-354 1368 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis 1368 26 2510630 62.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/775/415/GCA_000775415.1_DHOM_v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA235370 1450519 SAMN02614628 DHOM_v1 Scaffold Newbler v. 2.8 2014-01-31T15:58:15.220 Spain: Leon blood Illumina Bielefeld University 193.1x 95.44 94.15 0 100 0.13 GCF_000775415.1 JDRS01 2250 2314 2314 8 6 49 1 Dermabacter_hominis_homd_HMT_354 GCA_000785515.1 HMT-755 NCTC 8618 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius NCTC 8618 1 2188923 40.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/785/515/GCA_000785515.1_ASM78551v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA266841 1304 SAMN03174835 ASM78551v1 Complete Genome Newbler v. 2.3; MIRA v. 4.0 2014-11-10T17:27:34.003 United Kingdom Oral cavity Sanger dideoxy sequencing; 454; IonTorrent University of Otago 26.0x 99.99 99.34 0.15 99.99 0.01 GCF_000785515.1 1992 2111 2111 32 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_000786395.1 HMT-529 ATCC 4356 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-529 Lactobacillus acidophilus ATCC 4356 20 1956698 34.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/786/395/GCA_000786395.1_ASM78639v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus PRJNA263693 1579 SAMN03105773 ASM78639v1 Contig Newbler v. 2.6; Mauve v. 2.3 2014-10-12T22:16:18.523 missing missing 454 Facultad Ciencias Exactas y Naturales-UBA 20.0x 99.97 98.94 0.06 99.89 0.51 GCF_000786395.1 JRUT01 1884 1989 1989 41 4 59 1 Lactobacillus_acidophilus_homd_HMT_529 GCA_000786505.1 HMT-822 49-02 Named Cultivated Pathogen (Abundance: Scarce) HMT-822 Mycobacterium tuberculosis 49-02 1 4412379 65.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/786/505/GCA_000786505.1_MT49-02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium tuberculosis PRJEB4916 1427516 SAMEA3865285 MT49-02 Complete Genome 2016-02-05T08:07:27.990 JLU 47.0x 99.91 99.94 0 100 0.43 GCF_000786505.1 4061 4117 0 0 3 52 1 Mycobacterium_tuberculosis_homd_HMT_822 GCA_000787195.2 HMT-669 L91543 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis L91543 1 2173191 51.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/787/195/GCA_000787195.2_ASM78719v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA268105 487 SAMN03203069 ASM78719v2 Complete Genome SmrtPipe v. 1.87.139483 2014-11-20T14:01:33.726 United Kingdom not known IonTorrent; PacBio RSII Andrey V Karlyshev 81.8x 97.33 99.76 0.21 99.99 0.3 GCF_000787195.2 2030 2122 2122 20 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_000788015.1 HMT-731 ATCC 13883 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-731 Klebsiella pneumoniae ATCC 13883 87 5725870 57.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/788/015/GCA_000788015.1_ASM78801v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella pneumoniae PRJNA261239 72407 SAMN03076179 ASM78801v1 Scaffold CLC NGS Cell v. 7.5 2014-09-23T10:35:11.413 not collected not collected Illumina MiSeq Miami University 160.0x 99.16 100 0.02 100 0.08 GCF_000788015.1 JSZI01 5456 5689 5689 150 10 72 1 Klebsiella_pneumoniae_homd_HMT_731 GCA_000789275.1 HMT-468 168 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-468 Bacillus subtilis 168 1 4215619 43.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/789/275/GCA_000789275.1_ASM78927v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis PRJNA268543 224308 SAMN03222589 ASM78927v1 Complete Genome CLC NGS Cell v. unknown 2014-11-26T02:19:13.556 France laboratory strain Illumina HiSeq Medical University of Gdansk 10.0x 99.99 99.81 0.25 100 0.05 GCF_000789275.1 4213 4431 4431 100 30 87 1 Bacillus_subtilis_homd_HMT_468 GCA_000800235.1 HMT-669 NM3686 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis NM3686 1 2195266 51.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/800/235/GCA_000800235.1_ASM80023v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA260345 487 SAMN03020302 ASM80023v1 Complete Genome HGAP v. 2.0 2014-09-05T07:49:26.530 Brazil missing PacBio University of Pittsburgh 173.0x 97.26 99.83 0.21 99.99 0 GCF_000800235.1 2040 2131 2131 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_000800275.1 HMT-669 M7124 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M7124 1 2179483 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/800/275/GCA_000800275.1_ASM80027v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA260327 1095685 SAMN03020254 ASM80027v1 Complete Genome HGAP v. 2.0 2014-09-04T23:17:01.493 Saudi Arabia: Mecca missing PacBio University of Pittsburgh 131.0x 97.28 99.83 0.21 99.99 0.01 GCF_000800275.1 2010 2106 2106 19 15 61 1 Neisseria_meningitidis_homd_HMT_669 GCA_000800295.1 HMT-111 KCOM 1535; ChDC B708 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra KCOM 1535; ChDC B708 1 1627009 28.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/800/295/GCA_000800295.1_ASM80029v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA264589 33033 SAMN03135876 ASM80029v1 Complete Genome ALLPATHS_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-10-22T23:32:49.107 Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 97.47 98.48 0.61 99.51 0.96 GCF_000800295.1 1484 1571 1571 34 11 41 1 Parvimonas_micra_homd_HMT_111 GCA_000800315.1 HMT-669 NM3682 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis NM3682 1 2196674 51.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/800/315/GCA_000800315.1_ASM80031v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA260393 487 SAMN03020600 ASM80031v1 Complete Genome HGAP v. 2.0 2014-09-05T12:47:57.890 United Kingdom: Scotland human PacBio University of Pittsburgh 60.0x 97.29 99.83 0.21 100 0 GCF_000800315.1 2044 2135 2135 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_000800335.1 HMT-825 NTSN Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-825 Listeria monocytogenes NTSN 1 2904500 38.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/800/335/GCA_000800335.1_ASM80033v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes_B PRJNA267024 1639 SAMN03177401 ASM80033v1 Complete Genome Newbler v. 2.3 2014-11-12T20:24:06.820 China:Jiangsu 454 Yangzhou University 29.0x 99.51 99.45 0 99.98 0.78 GCF_000800335.1 2805 2982 2982 91 18 67 1 Listeria_monocytogenes_homd_HMT_825 GCA_000800355.1 HMT-669 NM3683 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis NM3683 1 2199215 51.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/800/355/GCA_000800355.1_ASM80035v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA260444 487 SAMN03022885 ASM80035v1 Complete Genome HGAP v. 2.0 2014-09-06T10:58:17.510 Canada missing PacBio University of Pittsburgh 89.0x 97.28 99.83 0.21 100 0 GCF_000800355.1 2041 2136 2136 19 14 61 1 Neisseria_meningitidis_homd_HMT_669 GCA_000800415.1 HMT-669 M10208 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M10208 1 2183230 51.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/800/415/GCA_000800415.1_ASM80041v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA260446 487 SAMN03022902 ASM80041v1 Complete Genome HGAP v. 2.0 2014-09-06T12:42:18.453 Chile missing PacBio University of Pittsburgh 55.0x 97.27 99.62 0 99.93 0.03 GCF_000800415.1 2082 2174 2174 20 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_000803625.1 HMT-952 TM7x Unnamed Cultivated Oral (Abundance: Medium) HMT-952 Nanosynbacter lyticus TM7x 1 705138 44.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/803/625/GCA_000803625.1_ASM80362v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter lyticus PRJNA241438 2093824 SAMN02693873 ASM80362v1 Complete Genome SPAdes v. v3.0 2014-03-21T17:00:53.720 USA: Los Angeles, CA Illumina J. Craig Venter Institute 250.0x 65.38 0 99.94 0.37 GCF_000803625.1 711 761 761 4 3 43 0 Nanosynbacter_lyticus_homd_HMT_952 GCA_000805675.1 HMT-053 ATCC 23348 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-053 Corynebacterium minutissimum ATCC 23348 38 2663401 59.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/805/675/GCA_000805675.1_ASM80567v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium minutissimum PRJNA264738 38301 SAMN03140311 ASM80567v1 Contig SPAdes v. v3.0.0 2014-10-23T14:23:05.156 United Kingdom: London skin Illumina HiSeq Centers for Disease Control & Prevention 250.0x 99.99 99.78 0 99.99 0.05 GCF_000805675.1 JSEF01 2459 2524 2524 8 4 51 2 Corynebacterium_minutissimum_homd_HMT_053 GCA_000807675.2 HMT-655 ATCC 8486 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-655 Eubacterium limosum ATCC 8486 1 4422837 47.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/807/675/GCA_000807675.2_ASM80767v2 d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__Eubacterium limosum PRJNA270275 1736 SAMN03265381 ASM80767v2 Complete Genome SMRT Analysis v. 2.3.0 2014-12-14T02:52:34.506 Germany human intestinal content PacBio; Illumina MiSeq Korean Advanced Institute of Science and Technology 200.0x 99.3 0 100 1.16 GCF_000807675.2 4127 4316 4316 111 16 61 1 Eubacterium_limosum_homd_HMT_655 GCA_000814045.1 HMT-576 KCOM 1650 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus KCOM 1650 5 1965746 38.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/814/045/GCA_000814045.1_ASM81404v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA270120 76860 SAMN03263055 ASM81404v1 Contig Allpaths-LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T20:26:08.623 South Korea: Gwangju IIIumina HiSeq Chosun University 1331.0x 97.81 99 0.12 99.98 0.1 GCF_000814045.1 JWIY01 1908 1989 1989 33 6 41 1 Streptococcus_constellatus_homd_HMT_576 GCA_000814205.1 HMT-634 34983 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-634 Enterobacter hormaechei 34983 4 5063734 54.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/814/205/GCA_000814205.1_ASM81420v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter hormaechei PRJNA259658 301105 SAMN03067416 ASM81420v1 Complete Genome HGAP v. 3 2014-09-12T11:50:17.580 USA bodily fluid Pacbio RS JCVI 8.2x 99.9 99.97 0.67 100 0.15 GCF_000814205.1 4747 4990 4990 132 25 85 1 Enterobacter_hormaechei_homd_HMT_634 GCA_000814775.1 HMT-690 B35 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum B35 42 2054808 34.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/814/775/GCA_000814775.1_ASM81477v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA173652 1226633 SAMN01983953 ASM81477v1 Contig Newbler v. 2.3 2013-03-18T14:54:12.190 USA: Kansas cattle 454 Frederick National Laboratory for Cancer Research 10.0x 98.92 97.47 0 98.64 3.08 GCF_000814775.1 AUZI01 2316 2382 2382 18 3 44 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_000816205.1 HMT-895 KLDS2.0603 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-895 Bifidobacterium animalis KLDS2.0603 1 1946899 60.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/816/205/GCA_000816205.1_ASM81620v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis PRJNA225662 1316911 SAMN02726251 ASM81620v1 Complete Genome phred v. 0.020425.c; Phrap v. 0.990329; consed v. 20.0 2014-04-12T08:35:25.410 China adult feces 454; ABI 3730 Northeast Agricultural University in Peoples Republic of China 66.0x 99.98 100 0 99.83 0.18 GCF_000816205.1 1564 1641 1641 9 14 53 1 Bifidobacterium_animalis_homd_HMT_895 GCA_000817005.1 HMT-734 NT_110_58 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae NT_110_58 1 2287774 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/817/005/GCA_000817005.1_ASM81700v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA244310 1313 SAMN02725063 ASM81700v1 Complete Genome RS_HGAP_Assembly.2 v. v2 2013 2014-04-10T11:43:02.463 Switzerland nasopharynx Pacific Biosciences University of Bern 137.0x 97.94 99.37 0.29 99.99 0.61 GCF_000817005.1 2246 2401 2401 84 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_000817065.1 HMT-686 UA159-FR Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UA159-FR 1 2031692 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/817/065/GCA_000817065.1_ASM81706v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA231968 1437447 SAMN03278343 ASM81706v1 Complete Genome Celera Assembler v. 7.0; SOAPdenovo v. 1.05 2015-01-08T12:25:08.230 PACBIO RS; Hiseq 2000 Jilin University 99.34 100 0 100 0.06 GCF_000817065.1 1897 2010 2010 32 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_000818035.1 HMT-598 ATCC 29315 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata ATCC 29315 1 2256647 54.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/818/035/GCA_000818035.1_ASM81803v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA247711 546263 SAMN02797820 ASM81803v1 Complete Genome SMRT analysis v2.1.1 v. 2013 2014-05-22T02:45:05.350 USA throat PacBio INRS-Institut Armand Frappier 99.99 99.68 0.85 99.98 0.66 GCF_000818035.1 2153 2245 2245 17 12 62 1 Neisseria_elongata_homd_HMT_598 GCA_000818055.1 HMT-895 BF052 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-895 Bifidobacterium animalis BF052 1 1938624 60.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/818/055/GCA_000818055.1_ASM81805v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis PRJNA252546 302911 SAMN02941905 ASM81805v1 Complete Genome Vector NTI v. 11.5 2014-07-28T00:43:38.680 Thailand:Nakhonratchasima feces of breast-fed infant Illumina Suranaree University of Technology 37.6x 99.99 100 0 99.88 0.25 GCF_000818055.1 1558 1633 1633 9 12 53 1 Bifidobacterium_animalis_homd_HMT_895 GCA_000826045.1 HMT-945 G321 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus G321 27 2037768 40.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/826/045/GCA_000826045.1_Haemophilus_parahaemolyticus_G321 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus_B PRJEB7536 1430896 SAMEA3105057 Haemophilus parahaemolyticus G Contig 2014-10-29T11:20:23.317 URMITE 135.0x 95.3 99.2 0.08 99.99 0.1 GCF_000826045.1 CDBC01 2017 2089 2089 20 4 47 1 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_000828735.1 HMT-799 SV3F4 Named Cultivated Vaginal (Abundance: Medium) HMT-799 Ureaplasma parvum SV3F4 1 727289 25.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/828/735/GCA_000828735.1_ASM82873v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum PRJDB1737 38504 SAMD00000347 ASM82873v1 Complete Genome HGAP v. 0.0.1 2014-04-28T00:00:00.000 Japan PacBio RS GIRC 197.0x 99.51 98.33 0 95.34 0.01 GCF_000828735.1 1217 1258 1258 4 6 30 1 Ureaplasma_parvum_homd_HMT_799 GCA_000829035.1 HMT-716 JCM 8130 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-716 Lacticaseibacillus paracasei JCM 8130 3 3017804 46.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/829/035/GCA_000829035.1_ASM82903v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei PRJDB478 47714 SAMD00010723 ASM82903v1 Complete Genome Newbler v. 1.1.02.15; phrap v. 0.990329 2014-03-26T08:12:23.606 454FLX; 3730xl Kyushu University 29.6x 99.99 99.46 0 99.99 0.24 GCF_000829035.1 2945 3055 3055 32 15 62 1 Lacticaseibacillus_paracasei_homd_HMT_716 GCA_000829055.1 HMT-568 ATCC 393 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-568 Lacticaseibacillus casei ATCC 393 3 2952961 47.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/829/055/GCA_000829055.1_ASM82905v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus casei PRJDB480 1423732 SAMD00061035 ASM82905v1 Complete Genome phrap v. 0.990329 2016-09-28T01:01:55.493 3730xl Kyushu University 5.9x 99.97 97.74 0.36 99.99 0.37 GCF_000829055.1 2890 2994 2994 29 15 59 1 Lacticaseibacillus_casei_homd_HMT_568 GCA_000832565.1 HMT-824 SK-102 Named Cultivated Pathogen (Abundance: Scarce) HMT-824 Bacillus anthracis SK-102 3 5505665 35.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/832/565/GCA_000832565.1_ASM83256v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis PRJNA238068 1392 SAMN03012770 ASM83256v1 Complete Genome Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 44837; Phrap v. SPS - 4.24; HGAP v. 2.2.0 2014-08-28T12:25:40.370 USA: New Jersey Wool from Pakistan Illumina; PacBio; 454 Los Alamos National Laboratory 479.0x 99.99 99.23 0.15 100 0.13 GCF_000832565.1 5736 5993 5993 126 33 97 1 Bacillus_anthracis_homd_HMT_824 GCA_000832825.1 HMT-824 HD571 Named Cultivated Pathogen (Abundance: Scarce) HMT-824 Bacillus anthracis HD571 2 5312179 35.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/832/825/GCA_000832825.1_ASM83282v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis PRJNA238070 1428 SAMN03085882 ASM83282v1 Complete Genome Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 44837; Phrap v. SPS - 4.24; HGAP v. 2.2.0 2014-10-01T17:59:54.127 Unknown Unknown Illumina; PacBio; 454 Los Alamos National Laboratory 496.0x 91.68 99.23 0 100 0.09 GCF_000832825.1 5345 5492 0 0 42 104 1 Bacillus_anthracis_homd_HMT_824 GCA_000833575.1 HMT-063 IBS B52218 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-063 Corynebacterium singulare IBS B52218 1 2830519 60.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/833/575/GCA_000833575.1_ASM83357v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium singulare PRJNA246651 161899 SAMN03177398 ASM83357v1 Complete Genome Newbler v. v. 2.8 2014-11-12T18:52:49.760 France: Institute of Bacteriol semen Illumina Bielefeld University 206.9x 99.78 0.55 100 0.23 GCF_000833575.1 2592 2665 2665 7 12 53 1 Corynebacterium_singulare_homd_HMT_063 GCA_000834845.1 HMT-827 Angola Named Cultivated Pathogen (Abundance: Scarce) HMT-827 Yersinia pestis Angola 4 4674610 47.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/834/845/GCA_000834845.1_ASM83484v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;s__Yersinia pestis PRJNA240101 349746 SAMN03177051 ASM83484v1 Complete Genome Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 44837; Phrap v. SPS - 4.24; HGAP v. 2.2.0 2014-11-12T13:42:33.320 Unknown Unknown Illumina; PacBio; 454 Los Alamos National Laboratory 367.0x 99.85 98.85 0.07 100 0.39 GCF_000834845.1 4305 4675 4675 279 22 68 1 Yersinia_pestis_homd_HMT_827 GCA_000835975.1 HMT-804 JCM 5805 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-804 Lactococcus lactis JCM 5805 88 2545792 35.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/835/975/GCA_000835975.1_ASM83597v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis PRJDB3260 1360 SAMD00023525 ASM83597v1 Contig GS De Novo Assembler v. 2.6 2015-01-27T09:49:31.000 NA 454 GS FLX Kirin 60.0x 99.99 99.24 0.58 100 0.59 GCF_000835975.1 BBSI01 2568 2668 2668 43 4 52 1 Lactococcus_lactis_homd_HMT_804 GCA_000836095.1 HMT-005 NBRC 109760 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-005 Acinetobacter lwoffii NBRC 109760 100 3298884 43.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/836/095/GCA_000836095.1_ASM83609v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter lwoffii PRJDB1754 28090 SAMD00019884 ASM83609v1 Contig newbler v. 2.6 2014-09-09T00:00:00.000 NA Illumina HiSeq 1000 National Institute of Technology and Evaluation 120.0x 99.98 99.93 0.27 99.99 0.13 GCF_000836095.1 BBSQ01 3155 3235 3235 19 2 58 1 Acinetobacter_lwoffii_homd_HMT_005 GCA_000931485.1 HMT-567 9557 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae 9557 85 2747651 33.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/931/485/GCA_000931485.1_ASM93148v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA273366 29380 SAMN03290999 ASM93148v1 Contig Velvet v. 1.2.07 2015-01-22T10:07:05.623 China: Hangzhou cerebrospinal fluid Illumina HiSeq The First Affiliated Hospital, School of Medicine, Zhejiang University 456.5x 98.6 99.81 0.03 100 0.21 GCF_000931485.1 JXXP01 2627 2761 2761 73 10 50 1 Staphylococcus_caprae_homd_HMT_567 GCA_000931575.1 HMT-641 477 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 477 1 1846259 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/931/575/GCA_000931575.1_ASM93157v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA235929 727 SAMN02595602 ASM93157v1 Complete Genome HGAP v. 1 2014-01-24T00:18:49.657 finnish OM study group PacBio Griffith University 150.0x 97.91 99.66 0 100 0 GCF_000931575.1 1744 1859 1859 35 20 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_000931605.1 HMT-641 C486 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae C486 1 1846503 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/931/605/GCA_000931605.1_ASM93160v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJNA235929 727 SAMN02595604 ASM93160v1 Complete Genome HGAP v. 1 2014-01-24T00:18:49.913 Dr Arnold Smith PacBio Griffith University 150.0x 97.25 99.77 0.23 100 0.02 GCF_000931605.1 1715 1824 1824 32 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_000931625.1 HMT-641 723 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 723 1 1887620 38.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/931/625/GCA_000931625.1_ASM93162v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA235929 727 SAMN02595605 ASM93162v1 Complete Genome HGAP v. 1 2014-01-24T00:18:50.007 finnish OM study group PacBio Griffith University 150.0x 98.6 99.66 0 100 0 GCF_000931625.1 1796 1909 1909 34 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_000931755.1 HMT-554 NBRC 109757 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-554 Acinetobacter baumannii NBRC 109757 53 3926017 39.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/931/755/GCA_000931755.1_ASM93175v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii PRJDB1754 470 SAMD00019507 ASM93175v1 Contig newbler v. 2.6 2014-08-25T00:00:00.000 NA Illumina HiSeq 1000 National Institute of Technology and Evaluation 75.0x 99.99 99.63 0 100 0.09 GCF_000931755.1 BBTN01 3701 3792 3792 41 3 46 1 Acinetobacter_baumannii_homd_HMT_554 GCA_000935585.1 HMT-216 KY4 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-216 Acidovorax temperans KY4 141 4475784 62.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/935/585/GCA_000935585.1_ASM93558v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax;s__Acidovorax temperans PRJNA270288 80878 SAMN03265417 ASM93558v1 Contig CLC NGS Cell v. 7.0 2014-12-14T08:48:48.680 Malaysia lake water Illumina HiSeq University of Malaya 59.0x 95.97 99.68 1.18 100 0.12 GCF_000935585.1 JXYQ01 4045 4126 4126 31 4 45 1 Acidovorax_temperans_homd_HMT_216 GCA_000953455.1 HMT-740 na Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-740 Pseudomonas oleovorans na 1 4696984 62.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/953/455/GCA_000953455.1_Ppseudo_Pac d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E oleovorans PRJEB5292 301 SAMEA2536150 Ppseudo_Pac Complete Genome 2014-05-16T08:06:08.230 CEBITEC 80.0x 97.11 99.51 1.63 100 0.33 GCF_000953455.1 4425 4736 4736 230 12 68 1 Pseudomonas_oleovorans_homd_HMT_740 GCA_000955645.1 HMT-643 ZT Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia ZT 168 2790340 43.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/955/645/GCA_000955645.1_PiZT d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA208776 1347790 SAMN02212661 PiZT Contig Newbler v. 2.5.3 2013-06-24T22:30:11.077 China: Shanghai root canal 454 Bio-X Institutes, Shanghai Jiao Tong University 65.0x 96.31 99.32 0.47 99.63 0.06 GCF_000955645.1 ATMK01 2392 2454 2454 10 5 46 1 Prevotella_intermedia_homd_HMT_643 GCA_000959885.1 HMT-578 CC5A Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus CC5A 7 2026543 42.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/959/885/GCA_000959885.1_ASM95988v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_H PRJNA274768 45634 SAMN03334893 ASM95988v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:42.197 USA: New York, Buffalo oral cavity Illumina MiSeq University at Buffalo 100.0x 94.99 100 0 99.99 0.09 GCF_000959885.1 JYGJ01 1924 2036 2036 32 13 66 1 Streptococcus_cristatus_homd_HMT_578 GCA_000959895.1 HMT-578 CR3 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus CR3 5 1998501 42.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/959/895/GCA_000959895.1_ASM95989v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus PRJNA274768 45634 SAMN03334894 ASM95989v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:42.500 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 99.98 100 0 99.98 0.03 GCF_000959895.1 JYGK01 1890 2002 2002 36 15 60 1 Streptococcus_cristatus_homd_HMT_578 GCA_000959925.1 HMT-622 G9B Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii G9B 2 2197447 40.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/959/925/GCA_000959925.1_ASM95992v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA274768 1302 SAMN03334895 ASM95992v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:42.670 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 96.14 100 0.37 99.99 0.66 GCF_000959925.1 JYGL01 2085 2178 2178 27 8 57 1 Streptococcus_gordonii_homd_HMT_622 GCA_000959965.1 HMT-622 UB10712 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii UB10712 7 2188318 40.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/959/965/GCA_000959965.1_ASM95996v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA274768 1302 SAMN03334897 ASM95996v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:44.390 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 95.56 100 0.05 100 0.44 GCF_000959965.1 JYGN01 2050 2170 2170 40 12 67 1 Streptococcus_gordonii_homd_HMT_622 GCA_000959975.1 HMT-707 OP51 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OP51 10 1844175 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/959/975/GCA_000959975.1_ASM95997v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_G PRJNA274768 1891914 SAMN03334898 ASM95997v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:45.940 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 94.62 99.87 0.6 99.88 0.1 GCF_000959975.1 JYGO01 1775 1918 1918 53 21 68 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_000959975.1 HMT-707 OP51 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OP51 10 1844175 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/959/975/GCA_000959975.1_ASM95997v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_G PRJNA274768 1891914 SAMN03334898 ASM95997v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:45.940 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 94.62 99.87 0.6 99.88 0.1 GCF_000959975.1 JYGO01 1775 1918 1918 53 21 68 1 Streptococcus_oralis_HMT_071_398_707 GCA_000960005.1 HMT-677 OT25 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis OT25 3 1915198 40.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/960/005/GCA_000960005.1_ASM96000v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CK PRJNA274768 28037 SAMN03334899 ASM96000v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:46.027 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 94.42 99.82 0.4 99.9 0.02 GCF_000960005.1 JYGP01 1826 1967 1967 65 12 63 1 Streptococcus_mitis_homd_HMT_677 GCA_000960025.1 HMT-677 SK137 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK137 7 1984405 40.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/960/025/GCA_000960025.1_ASM96002v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_DH PRJNA274768 28037 SAMN03334900 ASM96002v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:46.103 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 95.16 99.78 0.2 99.99 0.5 GCF_000960025.1 JYGQ01 1876 1994 1994 43 12 62 1 Streptococcus_mitis_homd_HMT_677 GCA_000960035.1 HMT-707 SK141 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SK141 5 1859497 41.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/960/035/GCA_000960035.1_ASM96003v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_G PRJNA274768 1891914 SAMN03334901 ASM96003v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:46.196 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 94.58 99.87 0.6 99.91 0.1 GCF_000960035.1 JYGR01 1810 1921 1921 55 4 51 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_000960035.1 HMT-707 SK141 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SK141 5 1859497 41.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/960/035/GCA_000960035.1_ASM96003v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_G PRJNA274768 1891914 SAMN03334901 ASM96003v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:46.196 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 94.58 99.87 0.6 99.91 0.1 GCF_000960035.1 JYGR01 1810 1921 1921 55 4 51 1 Streptococcus_oralis_HMT_071_398_707 GCA_000960065.1 HMT-677 SK145 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK145 8 1973165 40.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/960/065/GCA_000960065.1_ASM96006v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_DH PRJNA274768 28037 SAMN03334902 ASM96006v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:46.263 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 95.1 99.82 0.2 99.99 0.02 GCF_000960065.1 JYGS01 1860 1978 1978 46 9 62 1 Streptococcus_mitis_homd_HMT_677 GCA_000960085.1 HMT-444 UC921A Named Cultivated Oral (Abundance: High) HMT-444 Streptococcus infantis clade-444 UC921A 11 1791991 39.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/960/085/GCA_000960085.1_ASM96008v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_C PRJNA274768 68892 SAMN03334903 ASM96008v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:46.377 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 90.71 100 0.76 99.99 0.19 GCF_000960085.1 JYGT01 1758 1878 0 37 13 69 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_000960085.1 HMT-444 UC921A Named Cultivated Oral (Abundance: High) HMT-444 Streptococcus infantis clade-444 UC921A 11 1791991 39.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/960/085/GCA_000960085.1_ASM96008v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_C PRJNA274768 68892 SAMN03334903 ASM96008v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:46.377 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 90.71 100 0.76 99.99 0.19 GCF_000960085.1 JYGT01 1758 1878 0 37 13 69 1 Streptococcus_infantis_clade_444_homd_HMT_444 GCA_000960105.1 HMT-071 UC5873 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus UC5873 10 1835325 41.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/960/105/GCA_000960105.1_ASM96010v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BK PRJNA274768 1077464 SAMN03334904 ASM96010v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:47.707 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 92.68 99.87 0.4 100 0.13 GCF_000960105.1 JYGU01 1796 1908 1908 46 8 57 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_000960105.1 HMT-071 UC5873 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus UC5873 10 1835325 41.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/960/105/GCA_000960105.1_ASM96010v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BK PRJNA274768 1077464 SAMN03334904 ASM96010v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:47.707 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 92.68 99.87 0.4 100 0.13 GCF_000960105.1 JYGU01 1796 1908 1908 46 8 57 1 Streptococcus_oralis_HMT_071_398_707 GCA_000963255.1 HMT-431 UC6950A Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 UC6950A 29 2024688 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/963/255/GCA_000963255.1_ASM96325v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_F PRJNA274768 68892 SAMN03334905 ASM96325v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:47.790 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 88.41 100 0 100 0.02 GCF_000963255.1 JYOV01 1901 2021 0 51 10 58 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_000963255.1 HMT-431 UC6950A Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 UC6950A 29 2024688 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/963/255/GCA_000963255.1_ASM96325v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_F PRJNA274768 68892 SAMN03334905 ASM96325v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:47.790 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 88.41 100 0 100 0.02 GCF_000963255.1 JYOV01 1901 2021 0 51 10 58 1 Streptococcus_infantis_clade_431_homd_HMT_431 GCA_000963265.1 HMT-755 UC3162 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius UC3162 23 2164807 40.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/963/265/GCA_000963265.1_ASM96326v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA274768 1304 SAMN03334908 ASM96326v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:48.170 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 95.93 99.9 0.15 99.99 0.06 GCF_000963265.1 JYOY01 1938 2076 2076 41 26 70 1 Streptococcus_salivarius_homd_HMT_755 GCA_000963275.1 HMT-411 MGH413 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis MGH413 2 2098457 41.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/963/275/GCA_000963275.1_ASM96327v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_B PRJNA274768 1318 SAMN03334906 ASM96327v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:47.867 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 94.11 100 0.07 100 0.02 GCF_000963275.1 JYOW01 1957 2058 2058 34 8 58 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_000963335.1 HMT-755 KB005 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius KB005 21 2293898 39.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/963/335/GCA_000963335.1_ASM96333v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA274768 1304 SAMN03334907 ASM96333v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:48.070 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 95.91 99.88 0.25 100 0.59 GCF_000963335.1 JYOX01 2085 2219 2219 52 15 66 1 Streptococcus_salivarius_homd_HMT_755 GCA_000963345.1 HMT-622 I141 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii I141 10 2228772 40.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/963/345/GCA_000963345.1_ASM96334v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA274768 1302 SAMN03334909 ASM96334v1 Contig MyPro v. Jan-2015 2015-02-09T16:38:48.240 USA: New York, Buffalo oral cavity Illumina HiSeq University at Buffalo 100.0x 95.57 100 0 100 0.09 GCF_000963345.1 JYOZ01 2116 2221 2221 32 10 62 1 Streptococcus_gordonii_homd_HMT_622 GCA_000968335.1 HMT-641 2019 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 2019 1 1969659 38.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/968/335/GCA_000968335.1_ASM96833v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_H PRJNA175345 1232659 SAMN03450976 ASM96833v1 Complete Genome DNASTAR Seqman Pro v. 2010 2015-03-30T09:55:45.757 Sanger dideoxy sequencing; 454 The Research Institute at Nationwide Childrens Hospital and The Ohio State University, Department of Microbiology and DNA Facility, The University of Iowa, Carver College of Medicine and State 97 99.67 0 100 0.04 GCF_000968335.1 1910 2023 2023 34 20 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_000970665.2 HMT-622 IE35 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii IE35 1 2190105 40.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/970/665/GCA_000970665.2_ASM97066v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA279321 1302 SAMN03445771 ASM97066v2 Complete Genome Velvet v. 1.2.10 2015-03-24T22:50:39.113 India: Tamil Nadu, Chennai blood from a patient with infective endocarditis Illumina HiSeq University of Madras 3050.0x 95.18 100 0 100 0.02 GCF_000970665.2 2065 2158 2158 25 9 58 1 Streptococcus_gordonii_homd_HMT_622 GCA_000971845.1 HMT-049 ITA105 Named Cultivated Skin (Abundance: High) HMT-049 Corynebacterium kroppenstedtii ITA105 33 2574614 56.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/971/845/GCA_000971845.1_Corkro_ITA105.1.0 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium parakroppenstedtii PRJNA274824 161879 SAMN03333058 Corkro_ITA105.1.0 Contig MIRA v. 3.4.1.1 2015-02-07T07:42:18.836 Spain: Leon clinical swab from womens breast Ion Torrent ITACYL 107.8x 92.67 97.41 0 99.95 0.57 GCF_000971845.1 JYCR01 2262 2333 2333 15 7 48 1 Corynebacterium_kroppenstedtii_homd_HMT_049 GCA_000971855.1 HMT-049 ITA205 Named Cultivated Skin (Abundance: High) HMT-049 Corynebacterium kroppenstedtii ITA205 14 2514376 56.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/971/855/GCA_000971855.1_Corkro_ITA205.1.0 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium parakroppenstedtii PRJNA274886 161879 SAMN03333293 Corkro_ITA205.1.0 Contig MIRA v. 4.0.5 2015-02-09T06:53:48.770 Spain: Leon Clinical Swab Ion Torrent AC-Gen Reading Life 50.2x 92.67 96.51 0 99.97 1.16 GCF_000971855.1 JYDD01 2183 2253 2253 15 6 48 1 Corynebacterium_kroppenstedtii_homd_HMT_049 GCA_000972725.1 HMT-120 Sh29/312/L2 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus Sh29/312/L2 1 2561368 32.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/972/725/GCA_000972725.1_ASM97272v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA279309 1283 SAMN03436301 ASM97272v1 Complete Genome Mira v. 4.0.2; spades v. 3.1.1; CLC Genomics Workbench v. 7.5 ; Geneious 8.0.5 2015-03-20T19:41:34.533 Brazil: Sao Paulo blood Ion Torrent PGM platform USP 160.0x 99.33 99.43 0 99.94 0.21 GCF_000972725.1 2500 2675 2675 96 16 62 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_000973085.1 HMT-844 SN35 Named Cultivated Vaginal (Abundance: Medium) HMT-844 Sneathia vaginalis SN35 1 1330224 28.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/973/085/GCA_000973085.1_ASM97308v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia;s__Sneathia vaginalis PRJNA276758 187101 SAMN03380727 ASM97308v1 Complete Genome Newbler v. 2.6 2015-03-01T17:58:49.150 USA amniotic fluid Sanger dideoxy sequencing; 454 Vaginal Human Microbiome Consortium 200.0x 98.88 0 99.91 0.58 GCF_000973085.1 1271 1324 1324 10 6 36 1 Sneathia_vaginalis_homd_HMT_844 GCA_000982825.1 HMT-753 ATCC 29544 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-753 Cronobacter sakazakii ATCC 29544 4 4663565 56.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/982/825/GCA_000982825.1_ASM98282v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter;s__Cronobacter sakazakii PRJNA276173 28141 SAMN03371468 ASM98282v1 Complete Genome HGAP v. 2.0 2015-02-24T04:39:12.843 USA:Tennessee primary hospital lab PacBio Food-borne Pathogen Omics Research Center 73.0x 99.99 99.97 0.2 100 0.06 GCF_000982825.1 4428 4656 4656 121 22 84 1 Cronobacter_sakazakii_homd_HMT_753 GCA_000988215.1 HMT-832 TD1 Named Cultivated Skin/Ear (Abundance: Medium) HMT-832 Corynebacterium otitidis TD1 148 2144430 71.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/988/215/GCA_000988215.1_ASM98821v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium otitidis PRJNA282675 29321 SAMN03573806 ASM98821v1 Contig SPAdes v. 3.5 2015-04-29T13:41:08.000 USA: Richmond central line catheter tip culture Nextera paired-end; Illumina CDPH 50.0x 98.74 97.54 0.15 99.99 0.75 GCF_000988215.1 LBNF01 1865 1936 1936 8 2 60 1 Corynebacterium_otitidis_homd_HMT_832 GCA_000993765.1 HMT-745 AP1 Named Cultivated Pathogen (Abundance: Scarce) HMT-745 Streptococcus pyogenes AP1 1 1908294 38.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/993/765/GCA_000993765.1_ASM99376v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes PRJNA242701 1314 SAMN02716635 ASM99376v1 Complete Genome Velvet v. 1.0.20 2014-04-03T07:39:11.030 Czech Republic:Prague blood Illumina MiSeq COMBACTE 238.0x 99.99 100 0 100 0.6 GCF_000993765.1 1889 2012 2012 50 15 57 1 Streptococcus_pyogenes_homd_HMT_745 GCA_001005065.1 HMT-891 DSM 13734 Named Cultivated Vaginal (Abundance: Medium) HMT-891 Bifidobacterium scardovii DSM 13734 57 3143954 64.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/005/065/GCA_001005065.1_ASM100506v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium scardovii PRJNA279230 1150461 SAMN03443793 ASM100506v1 Contig Velvet v. 1.2.10 2015-03-24T06:55:33.813 Sweden blood Illumina MiSeq The First Affiliated Hospital, College of Medicine, Zhejiang University 736.0x 99.99 100 2.15 99.99 0.36 GCF_001005065.1 LBIB01 2517 2591 2591 13 2 58 1 Bifidobacterium_scardovii_homd_HMT_891 GCA_001006485.1 HMT-613 ATCC 43037 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia ATCC 43037 141 3281748 47.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/006/485/GCA_001006485.1_ASM100648v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJNA266975 28112 SAMN03176940 ASM100648v1 Contig SPAdes v. 3.1.0. 2014-11-12T11:21:33.420 USA Human periodontal pocket Illumina MiSeq BOKU Vienna 190.0x 99.99 98.91 0.86 99.95 0.48 GCF_001006485.1 JUET01 2729 2805 2805 26 5 44 1 Tannerella_forsythia_homd_HMT_613 GCA_001007025.1 HMT-733 Wien1 Named Cultivated Pathogen (Abundance: Scarce) HMT-733 Chlamydia pneumoniae Wien1 1 1228125 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/007/025/GCA_001007025.1_Wien1 d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila;s__Chlamydophila pneumoniae PRJEB8246 83558 SAMEA3212833 Wien1 Complete Genome 2015-05-06T08:06:49.660 Austria:Vienna host cartoid artery University of Vienna 196.0x 99.95 99.49 0 99.02 0.1 GCF_001007025.1 1050 1095 1095 3 3 38 1 Chlamydia_pneumoniae_homd_HMT_733 GCA_001007045.1 HMT-733 K7 Named Cultivated Pathogen (Abundance: Scarce) HMT-733 Chlamydia pneumoniae K7 1 1228523 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/007/045/GCA_001007045.1_K7 d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila;s__Chlamydophila pneumoniae PRJEB8246 83558 SAMEA3212826 K7 Complete Genome 2015-05-06T08:06:48.780 Finland respiratory tract University of Vienna 195.0x 99.95 99.49 0 99.02 0.1 GCF_001007045.1 1054 1099 1099 3 3 38 1 Chlamydia_pneumoniae_homd_HMT_733 GCA_001007065.1 HMT-733 CWL011 Named Cultivated Pathogen (Abundance: Scarce) HMT-733 Chlamydia pneumoniae CWL011 1 1228579 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/007/065/GCA_001007065.1_CWL011 d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila;s__Chlamydophila pneumoniae PRJEB8246 83558 SAMEA3212821 CWL011 Complete Genome 2015-05-06T08:06:48.330 USA:Atlanta throat University of Vienna 58.0x 99.95 99.49 0 99.02 0.1 GCF_001007065.1 1052 1097 1097 3 3 38 1 Chlamydia_pneumoniae_homd_HMT_733 GCA_001007085.1 HMT-733 Wien3 Named Cultivated Pathogen (Abundance: Scarce) HMT-733 Chlamydia pneumoniae Wien3 1 1228576 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/007/085/GCA_001007085.1_Wien3 d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila;s__Chlamydophila pneumoniae PRJEB8246 83558 SAMEA3212835 Wien3 Complete Genome 2015-05-06T08:06:49.800 Austria:Vienna infrarenal artery University of Vienna 244.0x 99.95 99.49 0 99.02 0.1 GCF_001007085.1 1052 1097 1097 3 3 38 1 Chlamydia_pneumoniae_homd_HMT_733 GCA_001007145.1 HMT-733 PB2 Named Cultivated Pathogen (Abundance: Scarce) HMT-733 Chlamydia pneumoniae PB2 1 1228126 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/007/145/GCA_001007145.1_PB2 d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila;s__Chlamydophila pneumoniae PRJEB8246 83558 SAMEA3212830 PB2 Complete Genome 2015-05-06T08:06:49.083 Germany:Luebeck PBMC University of Vienna 196.0x 99.95 99.49 0 99.02 0.1 GCF_001007145.1 1052 1097 1097 3 3 38 1 Chlamydia_pneumoniae_homd_HMT_733 GCA_001008205.1 HMT-851 11P18 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus 11P18 40 1785806 38.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/008/205/GCA_001008205.1_ASM100820v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA282951 726 SAMN03580969 ASM100820v1 Contig Newbler v. 2.3 2015-05-04T13:00:04.117 USA: NY, Buffalo nasopharynx 454 University of Iowa 21.0x 95.34 99.66 0.23 100 0 GCF_001008205.1 LCTK01 1655 1733 1733 27 4 46 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_001008215.1 HMT-851 1P26 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus 1P26 63 1869699 38.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/008/215/GCA_001008215.1_ASM100821v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus sp000242295 PRJNA282677 726 SAMN03573808 ASM100821v1 Contig Newbler v. 2.3 2015-04-29T14:11:05.177 USA: NY, Buffalo nasopharynx 454 University of Iowa 6.0x 95.66 99.66 0.42 100 0.04 GCF_001008215.1 LCTI01 1795 1882 1882 31 7 48 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_001008225.1 HMT-851 3P5 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus 3P5 73 1836392 38.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/008/225/GCA_001008225.1_ASM100822v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_M PRJNA282678 726 SAMN03573809 ASM100822v1 Contig Newbler v. 2.3 2015-04-29T14:11:07.230 USA: NY, Buffalo nasopharynx 454 University of Iowa 20.0x 95.66 99.66 0.08 100 0.3 GCF_001008225.1 LCTJ01 1713 1806 1806 40 4 48 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_001008275.1 HMT-851 27P25 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus 27P25 63 1876155 38.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/008/275/GCA_001008275.1_ASM100827v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_M PRJNA282658 726 SAMN03573714 ASM100827v1 Contig Newbler v. 2.3 2015-04-29T12:34:10.433 USA: NY, Buffalo nasopharynx 454 University of Iowa 26.0x 95.51 99.6 0.84 100 0.09 GCF_001008275.1 LCTH01 1750 1837 1837 33 6 47 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_001011095.1 HMT-756 Ren Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-756 Ligilactobacillus salivarius Ren 3 1978364 33.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/011/095/GCA_001011095.1_ASM101109v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius PRJNA247452 1194971 SAMN02584770 ASM101109v1 Complete Genome SMRT analysis v. 2.2.0 2014-01-14T22:27:05.120 China: Guangxi human feces Illumina; PacBio China Agricultural University 98.06 99.48 0 99.99 0.04 GCF_001011095.1 1907 2039 2039 33 21 77 1 Ligilactobacillus_salivarius_homd_HMT_756 GCA_001018775.2 HMT-550 NRS149 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus NRS149 1 2764708 32.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/018/775/GCA_001018775.2_ASM101877v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA231221 1280 SAMN03255453 ASM101877v2 Complete Genome HGAP v. 2 2014-12-08T12:49:40.670 Missing human PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 13.1x 98.95 99.51 0.08 100 0.12 GCF_001018775.2 2529 2725 2725 116 19 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_001019115.2 HMT-076 FDAARGOS_39 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri FDAARGOS_39 6 2598175 32.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/019/115/GCA_001019115.2_ASM101911v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA231221 2201033 SAMN03255478 ASM101911v2 Contig HGAP v. 2 2014-12-08T12:49:53.210 France wound from outpatient PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 1076.0x 99.73 1.26 100 0.96 GCF_001019115.2 JYAQ02 2514 2648 2648 52 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_001021895.1 HMT-550 CA15 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus CA15 2 2864278 32.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/021/895/GCA_001021895.1_ASM102189v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA246386 1280 SAMN02767179 ASM102189v1 Complete Genome HGAP v. v2 2014-05-07T12:35:30.757 Colombia blood PacBio South American MRSA Consortium 293.5x 99.91 99.37 0.08 100 0.13 GCF_001021895.1 2646 2841 2841 114 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_001023515.1 HMT-209 J5-51 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus J5-51 141 3794153 66.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/023/515/GCA_001023515.1_ASM102351v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA266489 680496 SAMN03165360 ASM102351v1 Contig Velvet v. 1.2.09 2014-11-06T03:59:04.510 China: Shaoguan, Guangdong wastewater sludge Illumina GAIIx Peking University 160.0x 94.28 0.6 92.79 1.14 GCF_001023515.1 JSYI01 3536 3739 3739 153 3 46 1 Acidovorax_ebreus_homd_HMT_209 GCA_001025175.1 HMT-889 JCM 1192 Named Cultivated Vaginal (Abundance: Medium) HMT-889 Bifidobacterium breve JCM 1192 1 2269415 58.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/025/175/GCA_001025175.1_ASM102517v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium breve PRJDB57 518634 SAMD00061041 ASM102517v1 Complete Genome phrap v 0.990329 2016-09-28T01:01:59.460 3730xl Graduate School of Frontier Sciences, University of Tokyo 8.9x 99.99 100 0 99.94 0.1 GCF_001025175.1 1930 2001 2001 12 4 54 1 Bifidobacterium_breve_homd_HMT_889 GCA_001027105.1 HMT-550 DSM 20231 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus DSM 20231 2 2782562 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/027/105/GCA_001027105.1_ASM102710v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA283471 1280 SAMN03651231 ASM102710v1 Complete Genome HGAP3 v. 2.3.0 2015-05-10T23:13:33.000 unknown clinical PacBio Okinawa Institute of Advanced Sciences 210.0x 99.99 99.51 0.08 100 0.11 GCF_001027105.1 2529 2723 2723 112 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_001027985.1 HMT-882 DSM 6035 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-882 Limosilactobacillus panis DSM 6035 219 2082789 47.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/027/985/GCA_001027985.1_ASM102798v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus panis PRJNA284098 1423782 SAMN03658566 ASM102798v1 Contig Velvet v. 1.2.07 2015-05-15T03:38:14.000 Germany sourdough Illumina MiSeq The First Affiliated Hospital, College of Medicine, Zhejiang University 1366.0x 99.97 99.46 2.28 99.85 1.65 GCF_001027985.1 LDPB01 1937 2075 2075 64 12 61 1 Limosilactobacillus_panis_homd_HMT_882 GCA_001028645.1 HMT-116 AYP1020 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis AYP1020 2 2503265 32.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/028/645/GCA_001028645.1_ASM102864v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA232502 72758 SAMN02739579 ASM102864v1 Complete Genome HGAP v. 1.1 2014-04-28T21:35:02.280 Australia blood Pacific Biosciences Department of Microbiology, Monash University 164.0x 99.67 99.81 0.1 100 0.02 GCF_001028645.1 2369 2498 2498 47 19 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_001029815.1 HMT-669 B6116/77 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis B6116/77 1 2187672 51.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/029/815/GCA_001029815.1_ASM102981v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA235933 487 SAMN02595590 ASM102981v1 Complete Genome HGAP v. 1 2014-01-24T00:04:53.937 Iceland Pacific Biosciences RS Griffith University 140.0x 97.39 99.83 0.21 99.99 0 GCF_001029815.1 2035 2125 2125 18 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001042595.1 HMT-588 JCM 1195 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-588 Bifidobacterium dentium JCM 1195 1 2635669 58.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/042/595/GCA_001042595.1_ASM104259v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium PRJDB59 1150423 SAMD00061043 ASM104259v1 Complete Genome phrap v 0.990329 2016-09-28T01:02:01.170 3730xl Graduate School of Frontier Sciences, University of Tokyo 9.3x 99.99 100 0 99.98 0.63 GCF_001042595.1 2137 2212 2212 9 9 56 1 Bifidobacterium_dentium_homd_HMT_588 GCA_001042635.1 HMT-891 JCM 12489 Named Cultivated Vaginal (Abundance: Medium) HMT-891 Bifidobacterium scardovii JCM 12489 1 3158347 64.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/042/635/GCA_001042635.1_ASM104263v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium scardovii PRJDB62 1150461 SAMD00061046 ASM104263v1 Complete Genome phrap v 0.990329; Newbler v 1.1.02.15 2016-09-28T01:02:03.163 3730xl; 454FLX Graduate School of Frontier Sciences, University of Tokyo 37.8x 99.99 100 2.15 99.99 0.35 GCF_001042635.1 2528 2606 2606 13 6 58 1 Bifidobacterium_scardovii_homd_HMT_891 GCA_001042655.1 HMT-829 JCM 11026 Named Cultivated Vaginal (Abundance: High) HMT-829 Gardnerella vaginalis JCM 11026 1 1667406 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/042/655/GCA_001042655.1_ASM104265v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium vaginale PRJDB63 585528 SAMD00061047 ASM104265v1 Complete Genome phrap v 0.990329 2016-09-28T01:02:04.100 3730xl Graduate School of Frontier Sciences, University of Tokyo 11.8x 99.99 99.55 0 100 0.57 GCF_001042655.1 1268 1335 1335 15 6 45 1 Gardnerella_vaginalis_homd_HMT_829 GCA_001042675.1 HMT-586 JCM 12538 Named Cultivated Oral (Abundance: Scarce) HMT-586 Parascardovia denticolens JCM 12538 1 1890857 58.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/042/675/GCA_001042675.1_ASM104267v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia denticolens PRJDB64 864564 SAMD00061048 ASM104267v1 Complete Genome phrap v 0.990329 2016-09-28T01:02:05.100 3730xl Graduate School of Frontier Sciences, University of Tokyo 10.6x 99.99 99.77 0 99.93 0.2 GCF_001042675.1 1523 1578 1578 5 4 45 1 Parascardovia_denticolens_homd_HMT_586 GCA_001042695.1 HMT-642 JCM 12537 Named Cultivated Oral (Abundance: Scarce) HMT-642 Scardovia inopinata JCM 12537 1 1797862 48.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/042/695/GCA_001042695.1_ASM104269v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia inopinata PRJDB65 1150468 SAMD00061049 ASM104269v1 Complete Genome phrap v 0.990329 2016-09-28T01:02:06.076 3730xl Graduate School of Frontier Sciences, University of Tokyo 10.7x 99.99 99.3 0.47 96.92 0.41 GCF_001042695.1 1460 1522 1522 11 4 46 1 Scardovia_inopinata_homd_HMT_642 GCA_001042925.1 HMT-536 DSM 50071 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-536 Pseudomonas aeruginosa DSM 50071 30 6291043 66.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/042/925/GCA_001042925.1_G1273 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa PRJNA274345 287 SAMN03328803 G1273 Contig SPAdes v. 2.5.1 2015-02-04T05:09:56.793 missing missing Illumina MiSeq Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM 48.7x 99.99 99.68 0.11 100 0.05 GCF_001042925.1 JYLC01 5718 5920 5920 126 5 70 1 Pseudomonas_aeruginosa_homd_HMT_536 GCA_001043455.1 HMT-821 CIP 54.2 Named Cultivated Pathogen (Abundance: Scarce) HMT-821 Haemophilus ducreyi CIP 54.2 1 1557754 39.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/043/455/GCA_001043455.1_ASM104345v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B;s__Haemophilus_B ducreyi PRJNA270894 730 SAMN03271828 ASM104345v1 Chromosome Velvet v. 1.10.2 2014-12-21T14:52:30.476 not collected Illumina Indiana University School of Medicine 99.99 99.49 0 100 0.04 GCF_001043455.1 1508 1578 1578 17 0 52 1 Haemophilus_ducreyi_homd_HMT_821 GCA_001045685.1 HMT-536 DSM 50071 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-536 Pseudomonas aeruginosa DSM 50071 1 6317050 66.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/045/685/GCA_001045685.1_ASM104568v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa PRJNA285827 1123015 SAMN03761153 ASM104568v1 Complete Genome HGAP3 v. 2.3.0 2015-06-04T03:24:16.000 missing missing PacBio Okinawa Institute of Advanced Sciences 843.0x 99.99 99.68 0.11 100 0.19 GCF_001045685.1 5730 5945 5945 126 12 76 1 Pseudomonas_aeruginosa_homd_HMT_536 GCA_001047275.1 HMT-621 35/02 Named Cultivated Pathogen (Abundance: Scarce) HMT-621 Neisseria gonorrhoeae 35/02 1 2173235 52.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/047/275/GCA_001047275.1_ASM104727v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria gonorrhoeae PRJNA278367 485 SAMN03459417 ASM104727v1 Complete Genome Prokka v. 1.11 2015-04-03T14:35:04.617 USA Missing PacBio Centers for Disease Control and Prevention 262.0x 99.38 99.82 0.21 100 0.1 GCF_001047275.1 2159 2248 2248 20 12 56 1 Neisseria_gonorrhoeae_homd_HMT_621 GCA_001049775.1 HMT-814 44061 Named Cultivated Vaginal (Abundance: High) HMT-814 Fannyhessea vaginae 44061 41 1483295 42.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/049/775/GCA_001049775.1_ASM104977v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Fannyhessea;s__Fannyhessea vaginae PRJNA288564 82135 SAMN03801594 ASM104977v1 Contig GS De Novo Assembler v. JUNE-2015 2015-06-30T11:39:03.000 Sweden: Goteborg Vaginal specimen 454 Medical Diagnostic Laboratories 18.0x 96.76 98.39 0 92.89 1.54 GCF_001049775.1 LFWE01 1248 1306 1306 8 3 46 1 Fannyhessea_vaginae_homd_HMT_814 GCA_001051895.1 HMT-127 As3 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis As3 15 1983631 31.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/051/895/GCA_001051895.1_ASM105189v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA272632 1290 SAMN03490874 ASM105189v1 Contig MIRA v. 4.0 2015-04-17T16:13:10.000 USA whole mosquito body Illumina MiSeq The Pennsylvania State University 100.0x 99.07 91.31 0.59 87.55 0.01 GCF_001051895.1 LFKS01 1903 1964 0 0 8 52 1 Staphylococcus_hominis_homd_HMT_127 GCA_001051905.1 HMT-127 As1 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis As1 17 2113143 31.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/051/905/GCA_001051905.1_ASM105190v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA272632 1290 SAMN03433700 ASM105190v1 Contig MIRA v. 2014-08-01 2015-03-19T11:34:07.167 USA: PA, University Park whole mosquito body Illumina MiSeq The Pennsylvania State University 100.0x 99.01 98.24 0.59 99.97 0 GCF_001051905.1 LFKQ01 2037 2107 0 0 12 57 1 Staphylococcus_hominis_homd_HMT_127 GCA_001051915.1 HMT-127 As2 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis As2 16 2124015 31.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/051/915/GCA_001051915.1_ASM105191v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA272632 1290 SAMN03659004 ASM105191v1 Contig MIRA v. 4.0 2015-05-15T14:52:08.217 USA: PA, State College whole mosquito body Illumina MiSeq The Pennsylvania State University 100.0x 99.06 99.38 0.67 99.96 0 GCF_001051915.1 LFKR01 2049 2150 2150 58 10 32 1 Staphylococcus_hominis_homd_HMT_127 GCA_001052115.1 HMT-757 1094_BTHU Named Cultivated Oral (Abundance: Medium) HMT-757 Gemella sanguinis 1094_BTHU 118 1905481 29.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/052/115/GCA_001052115.1_ASM105211v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella sanguinis PRJNA267549 84135 SAMN03197056 ASM105211v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:02.207 USA: WA missing Illumina HiSeq University of Washington 12.0x 97.45 98.56 0 100 0.22 GCF_001052115.1 JWDE01 1791 1842 1842 24 6 20 1 Gemella_sanguinis_homd_HMT_757 GCA_001052555.1 HMT-059 1274_CJEI Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum 1274_CJEI 68 2466773 56.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/052/555/GCA_001052555.1_ASM105255v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA267549 43769 SAMN03197244 ASM105255v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:14.897 USA: WA missing Illumina HiSeq University of Washington 18.0x 97.8 99.67 0 100 0.1 GCF_001052555.1 JVVY01 2231 2283 2283 7 3 41 1 Corynebacterium_propinquum_homd_HMT_059 GCA_001053035.1 HMT-718 1209_HPAR Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 1209_HPAR 81 1975962 39.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/053/035/GCA_001053035.1_ASM105303v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_J PRJNA267549 729 SAMN03197171 ASM105303v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:10.380 USA: WA missing Illumina HiSeq University of Washington 19.0x 92.36 99.89 0.03 100 0.05 GCF_001053035.1 JVYT01 1872 1935 1935 25 7 30 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001053405.1 HMT-072 1327_CAUR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 1327_CAUR 94 2914153 59.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/053/405/GCA_001053405.1_ASM105340v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA267549 43770 SAMN03197307 ASM105340v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:19.970 USA: WA missing Illumina HiSeq University of Washington 23.0x 98.71 98.79 0.09 99.99 0.03 GCF_001053405.1 JVTN01 2711 2784 2784 9 6 57 1 Corynebacterium_striatum_homd_HMT_072 GCA_001053435.1 HMT-072 1329_CAUR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 1329_CAUR 94 2905202 59.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/053/435/GCA_001053435.1_ASM105343v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA267549 43770 SAMN03197309 ASM105343v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:20.043 USA: WA missing Illumina HiSeq University of Washington 22.0x 98.75 99.23 0.09 99.96 0.02 GCF_001053435.1 JVTL01 2693 2763 2763 9 6 54 1 Corynebacterium_striatum_homd_HMT_072 GCA_001053535.1 HMT-718 137_HINF Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 137_HINF 117 2175985 39.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/053/535/GCA_001053535.1_ASM105353v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA267549 729 SAMN03197326 ASM105353v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:21.053 USA: WA missing Illumina HiSeq University of Washington 29.0x 96.13 99.66 0.11 100 0.16 GCF_001053535.1 JVSU01 2054 2119 2119 31 5 28 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001053555.1 HMT-059 143_CAUR Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum 143_CAUR 82 2521392 56.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/053/555/GCA_001053555.1_ASM105355v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA267549 43769 SAMN03197333 ASM105355v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:21.637 USA: WA missing Illumina HiSeq University of Washington 22.0x 97.31 99.56 0 99.98 0.05 GCF_001053555.1 JVSN01 2287 2337 2337 6 3 40 1 Corynebacterium_propinquum_homd_HMT_059 GCA_001053575.1 HMT-718 146_HPAR Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 146_HPAR 41 2028731 39.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/053/575/GCA_001053575.1_ASM105357v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_S PRJNA267549 729 SAMN03197335 ASM105357v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:21.847 USA: WA missing Illumina HiSeq University of Washington 86.0x 94.36 99.89 0.23 100 0.04 GCF_001053575.1 JVSL01 1961 2061 2061 45 11 43 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001053915.1 HMT-718 1128_HPAR Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 1128_HPAR 56 1978251 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/053/915/GCA_001053915.1_ASM105391v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA267549 729 SAMN03197082 ASM105391v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:04.113 USA: WA missing Illumina HiSeq University of Washington 10.0x 93.49 99.89 0.68 100 1.5 GCF_001053915.1 JWCE01 1857 1932 1932 29 14 31 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001053985.1 HMT-198 1173_BLON Named Cultivated Oral (Abundance: Scarce) HMT-198 Alloscardovia omnicolens 1173_BLON 30 1792971 46.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/053/985/GCA_001053985.1_ASM105398v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia;s__Alloscardovia omnicolens PRJNA267549 419015 SAMN03197130 ASM105398v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:07.263 USA: WA missing Illumina HiSeq University of Washington 26.0x 98.55 99.94 0 96.16 0.06 GCF_001053985.1 JWAI01 1503 1566 1566 10 8 44 1 Alloscardovia_omnicolens_homd_HMT_198 GCA_001054195.1 HMT-783 1237_CAUR Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii 1237_CAUR 48 2355597 58.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/054/195/GCA_001054195.1_ASM105419v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA267549 169292 SAMN03197202 ASM105419v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:12.280 USA: WA missing Illumina HiSeq University of Washington 45.0x 83.7 99.53 0 99.98 0.05 GCF_001054195.1 JVXO01 2206 2261 2261 9 4 41 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_001054395.1 HMT-059 149_CJEI Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum 149_CJEI 67 2553120 56.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/054/395/GCA_001054395.1_ASM105439v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA267549 43769 SAMN03197338 ASM105439v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:22.087 USA: WA missing Illumina HiSeq University of Washington 11.0x 97.31 99.78 0 99.98 0.09 GCF_001054395.1 JVSI01 2310 2371 2371 6 12 42 1 Corynebacterium_propinquum_homd_HMT_059 GCA_001054455.1 HMT-718 156_HINF Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 156_HINF 41 1990134 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/054/455/GCA_001054455.1_ASM105445v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA267549 727 SAMN03197346 ASM105445v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:22.613 USA: WA missing Illumina HiSeq University of Washington 21.0x 85.22 99.89 0.45 100 1.48 GCF_001054455.1 JVSA01 1890 1983 1983 29 14 49 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001054475.1 HMT-718 155_HPAR Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 155_HPAR 61 1968517 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/054/475/GCA_001054475.1_ASM105447v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA267549 729 SAMN03197345 ASM105447v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:22.550 USA: WA missing Illumina HiSeq University of Washington 51.0x 93.38 99.89 0 100 0.02 GCF_001054475.1 JVSB01 1877 1940 1940 29 4 29 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001055095.1 HMT-718 432_HPAR Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 432_HPAR 26 1965853 39.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/055/095/GCA_001055095.1_ASM105509v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_Z PRJNA267549 729 SAMN03197626 ASM105509v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:13.130 USA: WA missing Illumina HiSeq University of Washington 11.0x 94.27 99.89 0.45 100 1.82 GCF_001055095.1 JVHG01 1848 1934 1934 23 9 53 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001055405.1 HMT-072 587_CAUR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 587_CAUR 184 2784991 59.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/055/405/GCA_001055405.1_ASM105540v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA267549 43770 SAMN03197788 ASM105540v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:23.057 USA: WA missing Illumina HiSeq University of Washington 11.0x 98.78 99.78 0.09 100 0.07 GCF_001055405.1 JVBA01 2578 2630 2630 9 3 39 1 Corynebacterium_striatum_homd_HMT_072 GCA_001055565.1 HMT-718 159_HINF Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 159_HINF 38 1946952 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/055/565/GCA_001055565.1_ASM105556v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA267549 727 SAMN03197350 ASM105556v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:22.850 USA: WA missing Illumina HiSeq University of Washington 29.0x 85.37 99.66 0.68 100 1.61 GCF_001055565.1 JVRW01 1821 1912 1912 26 20 44 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001055595.1 HMT-718 174_HPAR Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 174_HPAR 105 2184270 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/055/595/GCA_001055595.1_ASM105559v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA267549 729 SAMN03197365 ASM105559v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:23.850 USA: WA missing Illumina HiSeq University of Washington 47.0x 96.13 99.66 0.11 100 0.16 GCF_001055595.1 JVRH01 2057 2129 2129 31 9 31 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001055885.1 HMT-718 209_HPAR Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 209_HPAR 23 1997176 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/055/885/GCA_001055885.1_ASM105588v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AF PRJNA267549 729 SAMN03197401 ASM105588v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:26.340 USA: WA missing Illumina HiSeq University of Washington 28.0x 94.44 99.89 0 100 0 GCF_001055885.1 JVPX01 1884 1965 1965 25 8 47 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001056455.1 HMT-198 350_GVAG Named Cultivated Oral (Abundance: Scarce) HMT-198 Alloscardovia omnicolens 350_GVAG 21 1875004 46.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/056/455/GCA_001056455.1_ASM105645v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia;s__Alloscardovia omnicolens PRJNA267549 419015 SAMN03197541 ASM105645v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:07.677 USA: WA missing Illumina HiSeq University of Washington 12.0x 98.79 99.94 0 96.65 0.07 GCF_001056455.1 JVKN01 1581 1644 1644 9 8 45 1 Alloscardovia_omnicolens_homd_HMT_198 GCA_001056905.1 HMT-198 476_GVAG Named Cultivated Oral (Abundance: Scarce) HMT-198 Alloscardovia omnicolens 476_GVAG 25 1759239 46.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/056/905/GCA_001056905.1_ASM105690v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia;s__Alloscardovia omnicolens PRJNA267549 419015 SAMN03197668 ASM105690v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:15.827 USA: WA missing Illumina HiSeq University of Washington 25.0x 98.72 99.94 0 97.7 0.05 GCF_001056905.1 JVFQ01 1446 1512 1512 9 10 46 1 Alloscardovia_omnicolens_homd_HMT_198 GCA_001057005.1 HMT-718 488_HPAR Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 488_HPAR 70 2111613 39.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/057/005/GCA_001057005.1_ASM105700v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA267549 729 SAMN03197680 ASM105700v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:16.883 USA: WA missing Illumina HiSeq University of Washington 34.0x 96.83 99.89 0 100 0.04 GCF_001057005.1 JVFE01 1953 2014 2014 27 5 28 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001057035.1 HMT-700 490_CAPN Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea 490_CAPN 72 2516120 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/057/035/GCA_001057035.1_ASM105703v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA267549 1018 SAMN03197683 ASM105703v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:17.063 USA: WA missing Illumina HiSeq University of Washington 10.0x 96.53 100 0 99.99 0.02 GCF_001057035.1 JVFB01 2086 2130 2130 8 2 33 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_001057055.1 HMT-180 493_CFLA Unnamed Cultivated Oral (Abundance: Medium) HMT-180 Schaalia sp. HMT-180 493_CFLA 58 2354316 66.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/057/055/GCA_001057055.1_ASM105705v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000185285 PRJNA267549 1711 SAMN03197686 ASM105705v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:17.230 USA: WA missing Illumina HiSeq University of Washington 9.0x 80.46 99.53 0.47 99.98 0.05 GCF_001057055.1 JVEY01 1993 2061 2061 10 12 45 1 Schaalia_sp_HMT_180_homd_HMT_180 GCA_001057485.1 HMT-633 598_FBAL Named Cultivated Oral (Abundance: High) HMT-633 Cardiobacterium hominis 598_FBAL 178 2561486 59.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/057/485/GCA_001057485.1_ASM105748v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium hominis PRJNA267549 2718 SAMN03197797 ASM105748v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:23.583 USA: WA missing Illumina HiSeq University of Washington 31.0x 97.07 98.85 0.59 95.16 0.82 GCF_001057485.1 JVAR01 2366 2442 2442 11 6 58 1 Cardiobacterium_hominis_homd_HMT_633 GCA_001057555.1 HMT-633 612_ETAR Named Cultivated Oral (Abundance: High) HMT-633 Cardiobacterium hominis 612_ETAR 192 2541982 59.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/057/555/GCA_001057555.1_ASM105755v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium hominis PRJNA267549 2718 SAMN03197813 ASM105755v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:24.570 USA: WA missing Illumina HiSeq University of Washington 25.0x 97.06 99 0.59 95.16 0.77 GCF_001057555.1 JVAB01 2369 2432 2432 11 3 48 1 Cardiobacterium_hominis_homd_HMT_633 GCA_001058435.1 HMT-718 777_HPAR Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 777_HPAR 36 2001598 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/058/435/GCA_001058435.1_ASM105843v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA267549 729 SAMN03197987 ASM105843v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:35.680 USA: WA missing Illumina HiSeq University of Washington 14.0x 93.38 99.89 0.83 100 1.38 GCF_001058435.1 JUTJ01 1897 2012 2012 31 9 74 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001058455.1 HMT-072 797_CAUR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 797_CAUR 114 2743259 59.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/058/455/GCA_001058455.1_ASM105845v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA267549 43770 SAMN03198009 ASM105845v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:37.087 USA: WA missing Illumina HiSeq University of Washington 31.0x 98.76 99.67 0.09 99.99 0.12 GCF_001058455.1 JUSN01 2514 2575 2575 8 6 46 1 Corynebacterium_striatum_homd_HMT_072 GCA_001058525.1 HMT-031 805_CJEI Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum 805_CJEI 49 2516436 58.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/058/525/GCA_001058525.1_ASM105852v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA267549 2715677 SAMN03198019 ASM105852v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:37.796 USA: WA missing Illumina HiSeq University of Washington 14.0x 100 0 100 0.05 GCF_001058525.1 JUSD01 2217 2279 2279 15 3 43 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_001059125.1 HMT-718 781_HINF Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 781_HINF 45 1986583 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/059/125/GCA_001059125.1_ASM105912v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA267549 727 SAMN03197992 ASM105912v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:35.983 USA: WA missing Illumina HiSeq University of Washington 22.0x 85.53 99.81 0.15 100 0 GCF_001059125.1 JUTE01 1884 1973 1973 31 5 52 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001059185.1 HMT-036 839_HINF Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 839_HINF 47 1937310 38.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/059/185/GCA_001059185.1_ASM105918v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA267549 727 SAMN03198046 ASM105918v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:39.563 USA: WA missing Illumina HiSeq University of Washington 51.0x 90.86 99.49 0.38 100 0.14 GCF_001059185.1 JURC01 1821 1905 1905 33 5 45 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_001059425.1 HMT-513 933_AAPH Unnamed Cultivated Oral (Abundance: Low) HMT-513 Aggregatibacter sp. HMT-513 933_AAPH 38 1934895 42.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/059/425/GCA_001059425.1_ASM105942v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_A PRJNA267549 739 SAMN03198152 ASM105942v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:46.387 USA: WA missing Illumina HiSeq University of Washington 18.0x 94.89 99.89 0 100 0.01 GCF_001059425.1 JUNA01 1780 1858 1858 30 14 33 1 Aggregatibacter_sp_HMT_513_homd_HMT_513 GCA_001059475.1 HMT-891 981_BLON Named Cultivated Vaginal (Abundance: Medium) HMT-891 Bifidobacterium scardovii 981_BLON 150 3121288 64.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/059/475/GCA_001059475.1_ASM105947v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium scardovii PRJNA267549 158787 SAMN03198202 ASM105947v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:49.900 USA: WA missing Illumina HiSeq University of Washington 14.0x 99.2 100 2.38 99.87 0.84 GCF_001059475.1 JULC01 2506 2567 2567 13 2 45 1 Bifidobacterium_scardovii_homd_HMT_891 GCA_001059615.1 HMT-450 945_CAUR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 945_CAUR 138 2807048 61.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/059/615/GCA_001059615.1_ASM105961v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA267549 169292 SAMN03198165 ASM105961v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:47.313 USA: WA missing Illumina HiSeq University of Washington 15.0x 89.41 99.78 0.2 99.99 0.77 GCF_001059615.1 JUMN01 2577 2629 0 8 3 40 1 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_001059615.1 HMT-450 945_CAUR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 945_CAUR 138 2807048 61.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/059/615/GCA_001059615.1_ASM105961v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA267549 169292 SAMN03198165 ASM105961v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:47.313 USA: WA missing Illumina HiSeq University of Washington 15.0x 89.41 99.78 0.2 99.99 0.77 GCF_001059615.1 JUMN01 2577 2629 0 8 3 40 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001059665.1 HMT-072 962_CAUR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 962_CAUR 141 2834694 59.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/059/665/GCA_001059665.1_ASM105966v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA267549 43770 SAMN03198182 ASM105966v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:48.597 USA: WA missing Illumina HiSeq University of Washington 17.0x 98.66 99.78 0.65 99.98 0.58 GCF_001059665.1 JULW01 2616 2676 2676 10 2 47 1 Corynebacterium_striatum_homd_HMT_072 GCA_001059815.1 HMT-718 901_HPAR Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 901_HPAR 86 1905798 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/059/815/GCA_001059815.1_ASM105981v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp927911595 PRJNA267549 729 SAMN03198109 ASM105981v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:43.407 USA: WA missing Illumina HiSeq University of Washington 24.0x 94.23 99.89 0.38 100 0.12 GCF_001059815.1 JUOR01 1802 1854 1854 23 3 25 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001059955.1 HMT-072 963_CAUR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 963_CAUR 151 2830184 59.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/059/955/GCA_001059955.1_ASM105995v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA267549 43770 SAMN03198183 ASM105995v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:48.660 USA: WA missing Illumina HiSeq University of Washington 20.0x 98.67 99.78 0.65 99.99 0.57 GCF_001059955.1 JULV01 2612 2672 2672 10 3 46 1 Corynebacterium_striatum_homd_HMT_072 GCA_001060175.1 HMT-101 1044_NMEN Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava 1044_NMEN 84 2233620 49.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/060/175/GCA_001060175.1_ASM106017v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA267549 487 SAMN03197010 ASM106017v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:34:57.893 USA: WA missing Illumina HiSeq University of Washington 42.0x 88.07 99.92 0 100 0.03 GCF_001060175.1 JWEY01 2130 2183 2183 18 3 31 1 Neisseria_perflava_homd_HMT_101 GCA_001060545.1 HMT-681 1211_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 1211_RMUC 33 2277731 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/060/545/GCA_001060545.1_ASM106054v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA267549 43675 SAMN03197174 ASM106054v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:10.590 USA: WA missing Illumina HiSeq University of Washington 24.0x 95.21 99.33 0 100 0.02 GCF_001060545.1 JVYQ01 1748 1816 1816 13 5 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001060545.1 HMT-681 1211_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 1211_RMUC 33 2277731 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/060/545/GCA_001060545.1_ASM106054v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA267549 43675 SAMN03197174 ASM106054v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:10.590 USA: WA missing Illumina HiSeq University of Washington 24.0x 95.21 99.33 0 100 0.02 GCF_001060545.1 JVYQ01 1748 1816 1816 13 5 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_001061215.1 HMT-476 1210_NMEN Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava 1210_NMEN 84 2281658 49.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/061/215/GCA_001061215.1_ASM106121v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA267549 487 SAMN03197173 ASM106121v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:10.517 USA: WA missing Illumina HiSeq University of Washington 12.0x 88.02 100 0.11 100 0.13 GCF_001061215.1 JVYR01 2196 2250 2250 18 3 32 1 Neisseria_subflava_homd_HMT_476 GCA_001061305.1 HMT-587 1234_RDEN Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa 1234_RDEN 93 2491306 53.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/061/305/GCA_001061305.1_ASM106130v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA267549 2047 SAMN03197199 ASM106130v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:12.080 USA: WA missing Illumina HiSeq University of Washington 39.0x 96.56 99.34 0.66 100 0.97 GCF_001061305.1 JVXR01 2135 2195 2195 13 6 40 1 Rothia_dentocariosa_homd_HMT_587 GCA_001061435.1 HMT-598 1279_NMEN Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata 1279_NMEN 114 2365781 54.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/061/435/GCA_001061435.1_ASM106143v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA267549 88719 SAMN03197249 ASM106143v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:15.236 USA: WA missing Illumina HiSeq University of Washington 18.0x 96.56 99.91 0 99.99 0.17 GCF_001061435.1 JVVT01 2288 2354 2354 16 9 40 1 Neisseria_elongata_homd_HMT_598 GCA_001061655.1 HMT-681 138_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 138_RMUC 38 2308239 59.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/061/655/GCA_001061655.1_ASM106165v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197327 ASM106165v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:21.117 USA: WA missing Illumina HiSeq University of Washington 35.0x 94.5 99.33 0 100 0.02 GCF_001061655.1 JVST01 1754 1826 1826 13 9 48 2 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001061655.1 HMT-681 138_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 138_RMUC 38 2308239 59.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/061/655/GCA_001061655.1_ASM106165v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197327 ASM106165v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:21.117 USA: WA missing Illumina HiSeq University of Washington 35.0x 94.5 99.33 0 100 0.02 GCF_001061655.1 JVST01 1754 1826 1826 13 9 48 2 Rothia_mucilaginosa_HMT_147_681 GCA_001061665.1 HMT-147 141_RMUC Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 141_RMUC 16 2236745 61.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/061/665/GCA_001061665.1_ASM106166v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA267549 43675 SAMN03197331 ASM106166v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:21.420 USA: WA missing Illumina HiSeq University of Washington 23.0x 89.68 99.11 0 100 0.01 GCF_001061665.1 JVSP01 1743 1813 1813 12 7 50 1 Rothia_mucilaginosa_clade_147_homd_HMT_147 GCA_001061665.1 HMT-147 141_RMUC Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 141_RMUC 16 2236745 61.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/061/665/GCA_001061665.1_ASM106166v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA267549 43675 SAMN03197331 ASM106166v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:21.420 USA: WA missing Illumina HiSeq University of Washington 23.0x 89.68 99.11 0 100 0.01 GCF_001061665.1 JVSP01 1743 1813 1813 12 7 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_001061795.1 HMT-101 1045_NMEN Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava 1045_NMEN 81 2246977 49.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/061/795/GCA_001061795.1_ASM106179v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA267549 487 SAMN03197011 ASM106179v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:34:58.007 USA: WA missing Illumina HiSeq University of Washington 37.0x 88.11 99.92 0 100 0.03 GCF_001061795.1 JWEX01 2131 2194 2194 18 9 35 1 Neisseria_perflava_homd_HMT_101 GCA_001061885.1 HMT-180 1083_KSED Unnamed Cultivated Oral (Abundance: Medium) HMT-180 Schaalia sp. HMT-180 1083_KSED 104 2371643 66.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/061/885/GCA_001061885.1_ASM106188v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000185285 PRJNA267549 1276 SAMN03197046 ASM106188v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:01.383 USA: WA missing Illumina HiSeq University of Washington 42.0x 82.16 100 0.59 99.99 0.12 GCF_001061885.1 JWDO01 2011 2071 2071 9 3 47 1 Schaalia_sp_HMT_180_homd_HMT_180 GCA_001062425.1 HMT-587 1233_RDEN Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa 1233_RDEN 121 2476244 53.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/062/425/GCA_001062425.1_ASM106242v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA267549 2047 SAMN03197198 ASM106242v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:12.017 USA: WA missing Illumina HiSeq University of Washington 22.0x 96.56 99.34 0.66 100 1.02 GCF_001062425.1 JVXS01 2125 2180 2180 13 2 39 1 Rothia_dentocariosa_homd_HMT_587 GCA_001062855.1 HMT-681 175_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 175_RMUC 28 2292653 59.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/062/855/GCA_001062855.1_ASM106285v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197366 ASM106285v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:23.917 USA: WA missing Illumina HiSeq University of Washington 13.0x 94.54 99.33 0.67 100 0.01 GCF_001062855.1 JVRG01 1734 1805 1805 13 9 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001062855.1 HMT-681 175_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 175_RMUC 28 2292653 59.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/062/855/GCA_001062855.1_ASM106285v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197366 ASM106285v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:23.917 USA: WA missing Illumina HiSeq University of Washington 13.0x 94.54 99.33 0.67 100 0.01 GCF_001062855.1 JVRG01 1734 1805 1805 13 9 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_001063405.1 HMT-101 433_NMEN Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava 433_NMEN 51 2397512 49.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/063/405/GCA_001063405.1_ASM106340v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA267549 487 SAMN03197627 ASM106340v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:13.190 USA: WA missing Illumina HiSeq University of Washington 12.0x 88.24 99.7 0 100 0.11 GCF_001063405.1 JVHF01 2340 2425 2425 19 15 50 1 Neisseria_perflava_homd_HMT_101 GCA_001063455.1 HMT-682 480_NMEN Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa 480_NMEN 145 2444482 51.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/063/455/GCA_001063455.1_ASM106345v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA267549 1056807 SAMN03197673 ASM106345v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:16.310 USA: WA missing Illumina HiSeq University of Washington 19.0x 94.94 99.65 0 99.99 0 GCF_001063455.1 JVFL01 2132 2218 2218 16 9 60 1 Neisseria_mucosa_homd_HMT_682 GCA_001063545.1 HMT-681 509_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 509_RMUC 35 2374318 59.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/063/545/GCA_001063545.1_ASM106354v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197702 ASM106354v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:18.190 USA: WA missing Illumina HiSeq University of Washington 18.0x 94.49 99.33 0 100 0.08 GCF_001063545.1 JVEI01 1829 1901 1901 14 10 47 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001063545.1 HMT-681 509_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 509_RMUC 35 2374318 59.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/063/545/GCA_001063545.1_ASM106354v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197702 ASM106354v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:18.190 USA: WA missing Illumina HiSeq University of Washington 18.0x 94.49 99.33 0 100 0.08 GCF_001063545.1 JVEI01 1829 1901 1901 14 10 47 1 Rothia_mucilaginosa_HMT_147_681 GCA_001063695.1 HMT-116 558_SAUR Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis 558_SAUR 40 2584863 32.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/063/695/GCA_001063695.1_ASM106369v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA267549 29388 SAMN03197757 ASM106369v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:21.317 USA: WA missing Illumina HiSeq University of Washington 14.0x 98.91 99.81 0.64 99.99 0.32 GCF_001063695.1 JVCF01 2467 2557 2557 50 4 35 1 Staphylococcus_capitis_homd_HMT_116 GCA_001063785.1 HMT-633 599_SSED Named Cultivated Oral (Abundance: High) HMT-633 Cardiobacterium hominis 599_SSED 151 2565097 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/063/785/GCA_001063785.1_ASM106378v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium hominis PRJNA267549 2718 SAMN03197798 ASM106378v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:23.667 USA: WA missing Illumina HiSeq University of Washington 12.0x 97.05 99 0.59 93.94 0.8 GCF_001063785.1 JVAQ01 2375 2456 2456 11 6 63 1 Cardiobacterium_hominis_homd_HMT_633 GCA_001063965.1 HMT-013 203_NMEN Named Cultivated Oral (Abundance: Medium) HMT-013 Neisseria bacilliformis 203_NMEN 72 2400000 59.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/063/965/GCA_001063965.1_ASM106396v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria bacilliformis PRJNA267549 267212 SAMN03197396 ASM106396v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:25.957 USA: WA missing Illumina HiSeq University of Washington 19.0x 97.01 99.38 0.38 99.98 0.01 GCF_001063965.1 JVQC01 2163 2263 2263 10 21 68 1 Neisseria_bacilliformis_homd_HMT_013 GCA_001063995.1 HMT-681 207_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 207_RMUC 13 2323428 59.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/063/995/GCA_001063995.1_ASM106399v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA267549 43675 SAMN03197400 ASM106399v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:26.250 USA: WA missing Illumina HiSeq University of Washington 16.0x 94.44 99.33 0 100 0.03 GCF_001063995.1 JVPY01 1775 1848 1848 13 10 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001063995.1 HMT-681 207_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 207_RMUC 13 2323428 59.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/063/995/GCA_001063995.1_ASM106399v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA267549 43675 SAMN03197400 ASM106399v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:26.250 USA: WA missing Illumina HiSeq University of Washington 16.0x 94.44 99.33 0 100 0.03 GCF_001063995.1 JVPY01 1775 1848 1848 13 10 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_001064185.1 HMT-180 262_KSED Unnamed Cultivated Oral (Abundance: Medium) HMT-180 Schaalia sp. HMT-180 262_KSED 76 2452806 66.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/185/GCA_001064185.1_ASM106418v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000185285 PRJNA267549 1276 SAMN03197455 ASM106418v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:30.360 USA: WA missing Illumina HiSeq University of Washington 48.0x 82.71 100 0.47 99.99 0.05 GCF_001064185.1 JVNV01 2105 2171 2171 10 7 48 1 Schaalia_sp_HMT_180_homd_HMT_180 GCA_001064265.1 HMT-681 268_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 268_RMUC 14 2275643 59.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/265/GCA_001064265.1_ASM106426v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA267549 43675 SAMN03197461 ASM106426v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:30.767 USA: WA missing Illumina HiSeq University of Washington 14.0x 95.39 99.33 0 100 0.09 GCF_001064265.1 JVNP01 1756 1829 1829 13 6 53 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001064265.1 HMT-681 268_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 268_RMUC 14 2275643 59.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/265/GCA_001064265.1_ASM106426v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA267549 43675 SAMN03197461 ASM106426v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:30.767 USA: WA missing Illumina HiSeq University of Washington 14.0x 95.39 99.33 0 100 0.09 GCF_001064265.1 JVNP01 1756 1829 1829 13 6 53 1 Rothia_mucilaginosa_HMT_147_681 GCA_001064485.1 HMT-587 316_RDEN Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa 316_RDEN 47 2504054 53.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/485/GCA_001064485.1_ASM106448v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA267549 2047 SAMN03197506 ASM106448v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:40:42.160 USA: WA missing Illumina HiSeq University of Washington 68.0x 96.46 99.34 0.33 100 0.06 GCF_001064485.1 JVLW01 2131 2205 2205 12 12 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_001064575.1 HMT-681 328_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 328_RMUC 224 2337099 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/575/GCA_001064575.1_ASM106457v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197517 ASM106457v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:40:51.327 USA: WA missing Illumina HiSeq University of Washington 11.0x 94.57 99.33 0.67 99.98 0.06 GCF_001064575.1 JVLL01 1824 1881 1881 12 2 42 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001064575.1 HMT-681 328_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 328_RMUC 224 2337099 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/575/GCA_001064575.1_ASM106457v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197517 ASM106457v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:40:51.327 USA: WA missing Illumina HiSeq University of Washington 11.0x 94.57 99.33 0.67 99.98 0.06 GCF_001064575.1 JVLL01 1824 1881 1881 12 2 42 1 Rothia_mucilaginosa_HMT_147_681 GCA_001064585.1 HMT-681 329_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 329_RMUC 102 2359913 59.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/585/GCA_001064585.1_ASM106458v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197518 ASM106458v1 Contig ABYSS v. 1.3.5 2014-11-17T11:40:51.663 USA: WA missing Illumina HiSeq University of Washington 56.0x 94.55 99.33 0 100 0.02 GCF_001064585.1 JVLK01 1821 1879 1879 12 3 42 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001064585.1 HMT-681 329_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 329_RMUC 102 2359913 59.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/585/GCA_001064585.1_ASM106458v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197518 ASM106458v1 Contig ABYSS v. 1.3.5 2014-11-17T11:40:51.663 USA: WA missing Illumina HiSeq University of Washington 56.0x 94.55 99.33 0 100 0.02 GCF_001064585.1 JVLK01 1821 1879 1879 12 3 42 1 Rothia_mucilaginosa_HMT_147_681 GCA_001064605.1 HMT-476 338.rep1_NLAC Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava 338.rep1_NLAC 59 2154030 49.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/605/GCA_001064605.1_ASM106460v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA267549 486 SAMN03197528 ASM106460v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:01.463 USA: WA missing Illumina HiSeq University of Washington 20.0x 88.24 100 0 100 0.02 GCF_001064605.1 JVLA01 1990 2077 2077 36 12 38 1 Neisseria_subflava_homd_HMT_476 GCA_001064635.1 HMT-476 338.rep2_NMEN Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava 338.rep2_NMEN 57 2154389 49.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/635/GCA_001064635.1_ASM106463v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA267549 487 SAMN03197529 ASM106463v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:01.543 USA: WA missing Illumina HiSeq University of Washington 16.0x 88.17 100 0 100 0.02 GCF_001064635.1 JVKZ01 1992 2077 2077 36 12 36 1 Neisseria_subflava_homd_HMT_476 GCA_001064875.1 HMT-598 404_NMEN Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata 404_NMEN 78 2404281 53.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/875/GCA_001064875.1_ASM106487v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA267549 88719 SAMN03197594 ASM106487v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:11.153 USA: WA missing Illumina HiSeq University of Washington 25.0x 96.59 99.89 0 100 0.19 GCF_001064875.1 JVIM01 2277 2357 2357 14 12 53 1 Neisseria_elongata_homd_HMT_598 GCA_001064935.1 HMT-598 431_NMEN Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata 431_NMEN 77 2398408 53.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/935/GCA_001064935.1_ASM106493v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA267549 88719 SAMN03197625 ASM106493v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:13.073 USA: WA missing Illumina HiSeq University of Washington 12.0x 96.59 99.85 0 100 0.18 GCF_001064935.1 JVHH01 2277 2352 2352 14 9 51 1 Neisseria_elongata_homd_HMT_598 GCA_001065115.1 HMT-681 470_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 470_RMUC 10 2244809 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/065/115/GCA_001065115.1_ASM106511v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197665 ASM106511v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:15.653 USA: WA missing Illumina HiSeq University of Washington 16.0x 94.73 99.33 0 100 0.02 GCF_001065115.1 JVFT01 1716 1793 1793 13 14 48 2 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001065115.1 HMT-681 470_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 470_RMUC 10 2244809 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/065/115/GCA_001065115.1_ASM106511v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197665 ASM106511v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:15.653 USA: WA missing Illumina HiSeq University of Washington 16.0x 94.73 99.33 0 100 0.02 GCF_001065115.1 JVFT01 1716 1793 1793 13 14 48 2 Rothia_mucilaginosa_HMT_147_681 GCA_001065135.1 HMT-147 473_RMUC Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 473_RMUC 43 2271708 61.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/065/135/GCA_001065135.1_ASM106513v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA267549 43675 SAMN03197666 ASM106513v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:15.720 USA: WA missing Illumina HiSeq University of Washington 16.0x 89.77 97.44 0 100 0.03 GCF_001065135.1 JVFS01 1766 1832 1832 12 7 46 1 Rothia_mucilaginosa_clade_147_homd_HMT_147 GCA_001065135.1 HMT-147 473_RMUC Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 473_RMUC 43 2271708 61.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/065/135/GCA_001065135.1_ASM106513v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA267549 43675 SAMN03197666 ASM106513v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:15.720 USA: WA missing Illumina HiSeq University of Washington 16.0x 89.77 97.44 0 100 0.03 GCF_001065135.1 JVFS01 1766 1832 1832 12 7 46 1 Rothia_mucilaginosa_HMT_147_681 GCA_001065485.1 HMT-147 574_RMUC Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 574_RMUC 167 2232412 61.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/065/485/GCA_001065485.1_ASM106548v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA267549 43675 SAMN03197777 ASM106548v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:22.440 USA: WA missing Illumina HiSeq University of Washington 14.0x 89.79 98.44 1.33 100 0.03 GCF_001065485.1 JVBL01 1709 1768 1768 12 5 41 1 Rothia_mucilaginosa_clade_147_homd_HMT_147 GCA_001065485.1 HMT-147 574_RMUC Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 574_RMUC 167 2232412 61.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/065/485/GCA_001065485.1_ASM106548v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA267549 43675 SAMN03197777 ASM106548v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:22.440 USA: WA missing Illumina HiSeq University of Washington 14.0x 89.79 98.44 1.33 100 0.03 GCF_001065485.1 JVBL01 1709 1768 1768 12 5 41 1 Rothia_mucilaginosa_HMT_147_681 GCA_001065565.1 HMT-476 583_NLAC Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava 583_NLAC 148 2321103 49.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/065/565/GCA_001065565.1_ASM106556v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA267549 486 SAMN03197784 ASM106556v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:22.843 USA: WA missing Illumina HiSeq University of Washington 14.0x 88.41 99.7 0.23 100 0.06 GCF_001065565.1 JVBE01 2280 2332 2332 18 3 30 1 Neisseria_subflava_homd_HMT_476 GCA_001065605.1 HMT-476 595_NLAC Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava 595_NLAC 130 2331495 49.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/065/605/GCA_001065605.1_ASM106560v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA267549 486 SAMN03197794 ASM106560v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:23.413 USA: WA missing Illumina HiSeq University of Washington 31.0x 88.3 99.92 0.23 100 0.08 GCF_001065605.1 JVAU01 2287 2340 2340 18 3 31 1 Neisseria_subflava_homd_HMT_476 GCA_001066195.1 HMT-476 768_NMEN Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava 768_NMEN 122 2222581 49.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/066/195/GCA_001066195.1_ASM106619v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA267549 487 SAMN03197977 ASM106619v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:35.117 USA: WA missing Illumina HiSeq University of Washington 52.0x 88.11 99.77 0.23 100 0.16 GCF_001066195.1 JUTT01 2130 2185 2185 19 3 32 1 Neisseria_subflava_homd_HMT_476 GCA_001066795.1 HMT-116 664.rep2_SAUR Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis 664.rep2_SAUR 40 2561043 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/066/795/GCA_001066795.1_ASM106679v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA267549 29388 SAMN03197868 ASM106679v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:28.527 USA: WA missing Illumina HiSeq University of Washington 29.0x 98.91 99.81 0.64 99.99 0.13 GCF_001066795.1 JUXY01 2448 2530 2530 50 5 26 1 Staphylococcus_capitis_homd_HMT_116 GCA_001066935.1 HMT-587 694_RDEN Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa 694_RDEN 85 2425579 53.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/066/935/GCA_001066935.1_ASM106693v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA267549 2047 SAMN03197898 ASM106693v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:30.280 USA: WA missing Illumina HiSeq University of Washington 60.0x 96.27 99.34 0 100 0.05 GCF_001066935.1 JUWU01 2059 2116 2116 12 3 41 1 Rothia_dentocariosa_homd_HMT_587 GCA_001067255.1 HMT-476 776_NMEN Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava 776_NMEN 119 2158847 49.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/067/255/GCA_001067255.1_ASM106725v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA267549 487 SAMN03197986 ASM106725v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:35.627 USA: WA missing Illumina HiSeq University of Washington 48.0x 88.37 99.52 0.23 100 0.01 GCF_001067255.1 JUTK01 2042 2130 2130 48 3 36 1 Neisseria_subflava_homd_HMT_476 GCA_001067315.1 HMT-476 782_NMEN Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava 782_NMEN 95 2183132 49.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/067/315/GCA_001067315.1_ASM106731v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA267549 487 SAMN03197993 ASM106731v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:36.037 USA: WA missing Illumina HiSeq University of Washington 11.0x 88.4 99.7 0 100 0 GCF_001067315.1 JUTD01 2050 2172 2172 59 9 53 1 Neisseria_subflava_homd_HMT_476 GCA_001067345.1 HMT-681 788_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 788_RMUC 237 2257570 59.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/067/345/GCA_001067345.1_ASM106734v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197999 ASM106734v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:36.393 USA: WA missing Illumina HiSeq University of Washington 19.0x 94.22 99.33 1 100 1.11 GCF_001067345.1 JUSX01 1763 1817 1817 13 2 38 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001067345.1 HMT-681 788_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 788_RMUC 237 2257570 59.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/067/345/GCA_001067345.1_ASM106734v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03197999 ASM106734v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:36.393 USA: WA missing Illumina HiSeq University of Washington 19.0x 94.22 99.33 1 100 1.11 GCF_001067345.1 JUSX01 1763 1817 1817 13 2 38 1 Rothia_mucilaginosa_HMT_147_681 GCA_001067535.1 HMT-476 840_NMEN Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava 840_NMEN 65 2231564 49.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/067/535/GCA_001067535.1_ASM106753v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_B PRJNA267549 487 SAMN03198048 ASM106753v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:39.680 USA: WA missing Illumina HiSeq University of Washington 54.0x 88.14 99.92 0.34 100 0.03 GCF_001067535.1 JURA01 2119 2196 2196 31 3 42 1 Neisseria_subflava_homd_HMT_476 GCA_001067635.1 HMT-013 914_NLAC Named Cultivated Oral (Abundance: Medium) HMT-013 Neisseria bacilliformis 914_NLAC 174 2360941 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/067/635/GCA_001067635.1_ASM106763v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria bacilliformis PRJNA267549 267212 SAMN03198124 ASM106763v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:44.540 USA: WA missing Illumina HiSeq University of Washington 30.0x 97.92 99.38 0.51 99.99 0.03 GCF_001067635.1 JUOC01 2146 2224 2224 39 3 35 1 Neisseria_bacilliformis_homd_HMT_013 GCA_001067855.1 HMT-681 902_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 902_RMUC 66 2264347 59.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/067/855/GCA_001067855.1_ASM106785v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03198110 ASM106785v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:43.463 USA: WA missing Illumina HiSeq University of Washington 39.0x 94.14 99.33 0 100 0.01 GCF_001067855.1 JUOQ01 1736 1794 1794 13 5 39 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001067855.1 HMT-681 902_RMUC Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 902_RMUC 66 2264347 59.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/067/855/GCA_001067855.1_ASM106785v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA267549 43675 SAMN03198110 ASM106785v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:43.463 USA: WA missing Illumina HiSeq University of Washington 39.0x 94.14 99.33 0 100 0.01 GCF_001067855.1 JUOQ01 1736 1794 1794 13 5 39 1 Rothia_mucilaginosa_HMT_147_681 GCA_001068405.1 HMT-021 1005_STHE Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis 1005_STHE 137 2012516 39.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/068/405/GCA_001068405.1_ASM106840v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA267549 1343 SAMN03196967 ASM106840v1 Contig ABYSS v. 1.3.5 2014-11-17T11:34:54.753 USA: WA missing Illumina HiSeq University of Washington 10.0x 98.7 99.94 0.33 100 0 GCF_001068405.1 JWGP01 1914 1985 1985 40 3 27 1 Streptococcus_vestibularis_homd_HMT_021 GCA_001068415.1 HMT-686 1006_SMUT Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1006_SMUT 62 2026153 36.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/068/415/GCA_001068415.1_ASM106841v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA267549 1309 SAMN03196968 ASM106841v1 Contig ABYSS v. 1.3.5 2014-11-17T11:34:54.843 USA: WA missing Illumina HiSeq University of Washington 50.0x 99.2 100 0.19 100 0.04 GCF_001068415.1 JWGO01 1903 1981 1981 40 3 34 1 Streptococcus_mutans_homd_HMT_686 GCA_001069025.1 HMT-021 1004_SSPC Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis 1004_SSPC 129 2012293 39.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/069/025/GCA_001069025.1_ASM106902v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA267549 1579350 SAMN03196966 ASM106902v1 Contig ABYSS v. 1.3.5 2014-11-17T11:34:54.653 USA: WA missing Illumina HiSeq University of Washington 15.0x 99.94 0.33 100 0 GCF_001069025.1 JWGQ01 1919 1990 1990 40 3 27 1 Streptococcus_vestibularis_homd_HMT_021 GCA_001069055.1 HMT-578 1014_SOLI Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus 1014_SOLI 107 2015766 42.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/069/055/GCA_001069055.1_ASM106905v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp041432545 PRJNA267549 45634 SAMN03196976 ASM106905v1 Contig ABYSS v. 1.3.5 2014-11-17T11:34:55.467 USA: WA missing Illumina HiSeq University of Washington 13.0x 94.97 100 0 99.99 0.05 GCF_001069055.1 JWGG01 1946 2013 2013 35 2 29 1 Streptococcus_cristatus_homd_HMT_578 GCA_001069335.1 HMT-073 1171_SSPC Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis 1171_SSPC 45 2042733 41.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/069/335/GCA_001069335.1_ASM106933v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA267549 1579348 SAMN03197128 ASM106933v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:07.143 USA: WA missing Illumina HiSeq University of Washington 19.0x 100 0.4 99.93 0 GCF_001069335.1 JWAK01 1946 2040 2040 35 15 43 1 Streptococcus_australis_homd_HMT_073 GCA_001069775.1 HMT-578 142_SOLI Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus 142_SOLI 69 2079706 42.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/069/775/GCA_001069775.1_ASM106977v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus PRJNA267549 45634 SAMN03197332 ASM106977v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:21.533 USA: WA missing Illumina HiSeq University of Washington 29.0x 98.51 100 0 99.99 0.08 GCF_001069775.1 JVSO01 2030 2113 2113 35 6 41 1 Streptococcus_cristatus_homd_HMT_578 GCA_001069785.1 HMT-411 139.rep2_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 139.rep2_SPAR 114 2268674 41.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/069/785/GCA_001069785.1_ASM106978v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_T PRJNA267549 1318 SAMN03197329 ASM106978v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:21.280 USA: WA missing Illumina HiSeq University of Washington 55.0x 94.24 100 0.24 100 0.05 GCF_001069785.1 JVSR01 2178 2259 2259 39 6 35 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001069835.1 HMT-686 1002_SMUT Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1002_SMUT 49 2035965 36.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/069/835/GCA_001069835.1_ASM106983v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA267549 1309 SAMN03196964 ASM106983v1 Contig ABYSS v. 1.3.5 2014-11-17T11:34:54.490 USA: WA missing Illumina HiSeq University of Washington 13.0x 99.19 100 0.19 100 0.05 GCF_001069835.1 JWGS01 1905 1992 1992 40 9 37 1 Streptococcus_mutans_homd_HMT_686 GCA_001069915.1 HMT-578 1015_SOLI Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus 1015_SOLI 105 2019516 42.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/069/915/GCA_001069915.1_ASM106991v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp041432545 PRJNA267549 45634 SAMN03196977 ASM106991v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:34:55.537 USA: WA missing Illumina HiSeq University of Washington 12.0x 94.98 100 0 99.99 0.06 GCF_001069915.1 JWGF01 1949 2016 2016 35 2 29 1 Streptococcus_cristatus_homd_HMT_578 GCA_001070095.1 HMT-181 1093_SCAT Named NVP Cultivated Oral (Abundance: Medium) HMT-181 Schaalia lingnae 1093_SCAT 27 1916254 55.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/070/095/GCA_001070095.1_ASM107009v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000308055 PRJNA267549 29303 SAMN03197055 ASM107009v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:02.123 USA: WA missing Illumina HiSeq University of Washington 32.0x 82.91 99.96 0.47 99.89 0.1 JWDF01 1644 1704 1704 8 7 44 1 Schaalia_lingnae_homd_HMT_181 GCA_001070265.1 HMT-056 1116_SGOR Unnamed Cultivated Oral (Abundance: Medium) HMT-056 Streptococcus sp. HMT-056 1116_SGOR 126 1890154 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/070/265/GCA_001070265.1_ASM107026v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000220065 PRJNA267549 1302 SAMN03197070 ASM107026v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:03.217 USA: WA missing Illumina HiSeq University of Washington 16.0x 86.23 99.63 0 99.96 0.12 GCF_001070265.1 JWCQ01 1814 1873 1873 29 3 26 1 Streptococcus_sp_HMT_056_homd_HMT_056 GCA_001070445.1 HMT-411 1287_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 1287_SPAR 120 2178909 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/070/445/GCA_001070445.1_ASM107044v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA267549 1318 SAMN03197258 ASM107044v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:15.790 USA: WA missing Illumina HiSeq University of Washington 54.0x 94.19 100 0.52 100 0.01 GCF_001070445.1 JVVK01 2072 2155 2155 42 9 31 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001070575.1 HMT-411 139.rep1_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 139.rep1_SPAR 99 2276170 41.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/070/575/GCA_001070575.1_ASM107057v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_T PRJNA267549 1318 SAMN03197328 ASM107057v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:35:21.173 USA: WA missing Illumina HiSeq University of Washington 45.0x 94.26 100 0.24 100 0.05 GCF_001070575.1 JVSS01 2182 2268 2268 40 9 36 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001071035.1 HMT-411 392_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 392_SPAR 171 2150497 41.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/071/035/GCA_001071035.1_ASM107103v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA267549 1318 SAMN03197583 ASM107103v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:10.493 USA: WA missing Illumina HiSeq University of Washington 19.0x 94.1 100 0.29 99.99 0 GCF_001071035.1 JVIX01 2055 2133 2133 44 3 30 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001071295.1 HMT-411 540.rep1_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 540.rep1_SPAR 41 2277235 41.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/071/295/GCA_001071295.1_ASM107129v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA267549 1318 SAMN03197737 ASM107129v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:20.203 USA: WA missing Illumina HiSeq University of Washington 13.0x 94.01 100 0.07 100 0.01 GCF_001071295.1 JVCZ01 2176 2274 2274 45 5 47 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001071365.1 HMT-534 572.rep2_STHE Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens 572.rep2_STHE 47 2030278 37.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/071/365/GCA_001071365.1_ASM107136v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJNA267549 1725362 SAMN03197775 ASM107136v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:22.330 USA: WA missing Illumina HiSeq University of Washington 8.0x 99.45 0 99.13 0.06 GCF_001071365.1 JVBN01 1936 2022 2022 33 5 47 1 Granulicatella_adiacens_homd_HMT_534 GCA_001071575.1 HMT-718 167_HINF Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 167_HINF 27 2105931 39.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/071/575/GCA_001071575.1_ASM107157v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AE PRJNA267549 727 SAMN03197358 ASM107157v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:23.403 USA: WA missing Illumina HiSeq University of Washington 50.0x 84.56 99.66 0 100 0.06 GCF_001071575.1 JVRO01 1943 2041 2041 26 22 49 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001071805.1 HMT-758 216_SSAN Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis 216_SSAN 68 2357426 43.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/071/805/GCA_001071805.1_ASM107180v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA267549 1305 SAMN03197408 ASM107180v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:26.937 USA: WA missing Illumina HiSeq University of Washington 62.0x 96.51 100 0 100 0.06 GCF_001071805.1 JVPQ01 2256 2316 2316 29 3 27 1 Streptococcus_sanguinis_homd_HMT_758 GCA_001071965.1 HMT-567 252_SWAR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae 252_SWAR 122 2593581 33.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/071/965/GCA_001071965.1_ASM107196v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA267549 1292 SAMN03197443 ASM107196v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:29.530 USA: WA missing Illumina HiSeq University of Washington 17.0x 82.34 99.81 0 100 0.03 GCF_001071965.1 JVOH01 2487 2558 2558 51 2 17 1 Staphylococcus_caprae_homd_HMT_567 GCA_001072035.1 HMT-707 274_SPSE Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 274_SPSE 23 1993349 41.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/072/035/GCA_001072035.1_ASM107203v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CP PRJNA267549 1303 SAMN03197467 ASM107203v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:31.147 USA: WA missing Illumina HiSeq University of Washington 10.0x 95.11 99.83 1.13 100 0.14 GCF_001072035.1 JVNJ01 1870 1973 1973 41 6 55 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_001072035.1 HMT-707 274_SPSE Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 274_SPSE 23 1993349 41.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/072/035/GCA_001072035.1_ASM107203v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CP PRJNA267549 1303 SAMN03197467 ASM107203v1 Contig ABYSS v. 1.3.5 2014-11-17T11:35:31.147 USA: WA missing Illumina HiSeq University of Washington 10.0x 95.11 99.83 1.13 100 0.14 GCF_001072035.1 JVNJ01 1870 1973 1973 41 6 55 1 Streptococcus_oralis_HMT_071_398_707 GCA_001072275.1 HMT-576 317_SINT Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus 317_SINT 48 1853071 38.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/072/275/GCA_001072275.1_ASM107227v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA267549 76860 SAMN03197507 ASM107227v1 Contig ABYSS v. 1.3.5 2014-11-17T11:40:42.230 USA: WA missing Illumina HiSeq University of Washington 29.0x 97.71 99.35 0.12 99.98 0.13 GCF_001072275.1 JVLV01 1774 1879 1879 52 9 43 1 Streptococcus_constellatus_homd_HMT_576 GCA_001072295.1 HMT-411 318_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 318_SPAR 109 2092032 42.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/072/295/GCA_001072295.1_ASM107229v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA267549 1318 SAMN03197508 ASM107229v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:40:42.367 USA: WA missing Illumina HiSeq University of Washington 12.0x 94.05 100 0.07 100 0 GCF_001072295.1 JVLU01 1976 2058 2058 34 9 38 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001072385.1 HMT-073 343_SSPC Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis 343_SSPC 29 2028369 42.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/072/385/GCA_001072385.1_ASM107238v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001072385 PRJNA267549 1579342 SAMN03197534 ASM107238v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:04.490 USA: WA missing Illumina HiSeq University of Washington 49.0x 99.61 0.08 99.99 0 GCF_001072385.1 JVKU01 1893 1984 1984 37 9 44 1 Streptococcus_australis_homd_HMT_073 GCA_001072435.1 HMT-411 349_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 349_SPAR 54 2131313 42.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/072/435/GCA_001072435.1_ASM107243v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp027685415 PRJNA267549 1318 SAMN03197539 ASM107243v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:06.513 USA: WA missing Illumina HiSeq University of Washington 15.0x 94.31 100 0.18 100 0 GCF_001072435.1 JVKP01 1968 2061 2061 33 15 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001072745.1 HMT-073 400_SSPC Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis 400_SSPC 77 1946641 42.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/072/745/GCA_001072745.1_ASM107274v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA267549 1579341 SAMN03197590 ASM107274v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:10.927 USA: WA missing Illumina HiSeq University of Washington 30.0x 100 0.17 99.98 0 GCF_001072745.1 JVIQ01 1890 1960 1960 36 3 30 1 Streptococcus_australis_homd_HMT_073 GCA_001073005.1 HMT-755 449_SSPC Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 449_SSPC 31 2095754 40.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/073/005/GCA_001073005.1_ASM107300v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA267549 1579339 SAMN03197641 ASM107300v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:14.017 USA: WA missing Illumina HiSeq University of Washington 14.0x 99.4 0.58 99.97 0.1 GCF_001073005.1 JVGR01 1886 1972 1972 29 9 47 1 Streptococcus_salivarius_homd_HMT_755 GCA_001073145.1 HMT-686 503_SMUT Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 503_SMUT 30 2007546 36.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/073/145/GCA_001073145.1_ASM107314v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA267549 1309 SAMN03197696 ASM107314v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:17.790 USA: WA missing Illumina HiSeq University of Washington 10.0x 99.31 100 0.12 100 0.06 GCF_001073145.1 JVEO01 1872 2018 2018 75 12 58 1 Streptococcus_mutans_homd_HMT_686 GCA_001073155.1 HMT-411 512_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 512_SPAR 54 2121511 41.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/073/155/GCA_001073155.1_ASM107315v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_D PRJNA267549 1318 SAMN03197706 ASM107315v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:18.413 USA: WA missing Illumina HiSeq University of Washington 22.0x 94.4 99.66 0.8 99.99 0 GCF_001073155.1 JVEE01 2013 2110 2110 34 18 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001073285.1 HMT-758 550_SOLI Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis 550_SOLI 31 2433951 42.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/073/285/GCA_001073285.1_ASM107328v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_M PRJNA267549 45634 SAMN03197749 ASM107328v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:20.866 USA: WA missing Illumina HiSeq University of Washington 19.0x 87.31 100 0 99.99 0.11 GCF_001073285.1 JVCN01 2306 2383 2383 31 7 38 1 Streptococcus_sanguinis_homd_HMT_758 GCA_001073365.1 HMT-116 562_SWAR Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis 562_SWAR 39 2509044 32.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/073/365/GCA_001073365.1_ASM107336v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA267549 29388 SAMN03197762 ASM107336v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:21.596 USA: WA missing Illumina HiSeq University of Washington 16.0x 98.95 99.81 0.1 99.99 0.54 GCF_001073365.1 JVCA01 2386 2479 2479 50 6 36 1 Staphylococcus_capitis_homd_HMT_116 GCA_001073405.1 HMT-576 567_SINT Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus 567_SINT 59 2069778 37.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/073/405/GCA_001073405.1_ASM107340v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA267549 1338 SAMN03197768 ASM107340v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:21.933 USA: WA missing Illumina HiSeq University of Washington 10.0x 91.78 99.35 0.28 99.99 0.13 GCF_001073405.1 JVBU01 2012 2107 2107 37 12 45 1 Streptococcus_constellatus_homd_HMT_576 GCA_001073445.1 HMT-534 572.rep1_STHE Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens 572.rep1_STHE 46 2031571 37.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/073/445/GCA_001073445.1_ASM107344v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJNA267549 1725361 SAMN03197774 ASM107344v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:22.270 USA: WA missing Illumina HiSeq University of Washington 13.0x 99.45 0 99.13 0.06 GCF_001073445.1 JVBO01 1930 2025 2025 33 6 55 1 Granulicatella_adiacens_homd_HMT_534 GCA_001073635.1 HMT-644 631_SCON Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius 631_SCON 19 1968891 37.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/073/635/GCA_001073635.1_ASM107363v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA267549 1338 SAMN03197832 ASM107363v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:26.167 USA: WA missing Illumina HiSeq University of Washington 29.0x 98.3 99.88 0 100 0.21 GCF_001073635.1 JUZI01 1851 1945 1945 35 3 55 1 Streptococcus_intermedius_homd_HMT_644 GCA_001073715.1 HMT-116 645_SEPI Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis 645_SEPI 40 2554649 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/073/715/GCA_001073715.1_ASM107371v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA267549 29388 SAMN03197846 ASM107371v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:27.227 USA: WA missing Illumina HiSeq University of Washington 40.0x 98.91 99.81 0.64 99.99 0.12 GCF_001073715.1 JUYU01 2437 2553 2553 50 7 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_001073735.1 HMT-411 65_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 65_SPAR 121 2105780 42.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/073/735/GCA_001073735.1_ASM107373v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA267549 1318 SAMN03197851 ASM107373v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:27.510 USA: WA missing Illumina HiSeq University of Washington 15.0x 94.1 100 0.62 99.96 0 GCF_001073735.1 JUYP01 1999 2072 2072 38 3 31 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001074035.1 HMT-758 711_SSAN Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis 711_SSAN 61 2336029 43.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/074/035/GCA_001074035.1_ASM107403v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_X PRJNA267549 1305 SAMN03197916 ASM107403v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:31.377 USA: WA missing Illumina HiSeq University of Washington 37.0x 95.42 100 0 99.99 0.16 GCF_001074035.1 JUWC01 2215 2276 2276 30 3 27 1 Streptococcus_sanguinis_homd_HMT_758 GCA_001074345.1 HMT-622 771_SOLI Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii 771_SOLI 149 2190411 40.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/074/345/GCA_001074345.1_ASM107434v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA267549 45634 SAMN03197981 ASM107434v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:35.346 USA: WA missing Illumina HiSeq University of Washington 18.0x 87.22 100 0.37 100 0.42 GCF_001074345.1 JUTP01 2052 2136 2136 47 3 33 1 Streptococcus_gordonii_homd_HMT_622 GCA_001074375.1 HMT-576 783_SANG Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus 783_SANG 69 1913462 37.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/074/375/GCA_001074375.1_ASM107437v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA267549 76860 SAMN03197994 ASM107437v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:36.093 USA: WA missing Illumina HiSeq University of Washington 21.0x 97.53 98.91 0.54 99.99 0.1 GCF_001074375.1 JUTC01 1833 1899 1899 30 3 32 1 Streptococcus_constellatus_homd_HMT_576 GCA_001074415.1 HMT-622 787_SOLI Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii 787_SOLI 67 2186177 40.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/074/415/GCA_001074415.1_ASM107441v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA267549 45634 SAMN03197998 ASM107441v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:36.340 USA: WA missing Illumina HiSeq University of Washington 20.0x 86.84 100 0 99.99 0.06 GCF_001074415.1 JUSY01 2071 2139 2139 27 3 37 1 Streptococcus_gordonii_homd_HMT_622 GCA_001074525.1 HMT-543 83_SANG Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus 83_SANG 50 1839495 38.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/074/525/GCA_001074525.1_ASM107452v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA267549 1328 SAMN03198039 ASM107452v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:39.130 USA: WA missing Illumina HiSeq University of Washington 10.0x 95.9 99.88 0.07 99.97 0.05 GCF_001074525.1 JURJ01 1808 1885 1885 35 3 38 1 Streptococcus_anginosus_homd_HMT_543 GCA_001074805.1 HMT-411 886_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 886_SPAR 158 2185482 41.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/074/805/GCA_001074805.1_ASM107480v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_A PRJNA267549 1318 SAMN03198092 ASM107480v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:42.407 USA: WA missing Illumina HiSeq University of Washington 35.0x 93.19 100 0 99.99 0.01 GCF_001074805.1 JUPI01 2074 2137 2137 33 3 26 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001075725.1 HMT-576 925_SCON Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus 925_SCON 124 2043273 37.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/075/725/GCA_001075725.1_ASM107572v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA267549 76860 SAMN03198143 ASM107572v1 Contig ABYSS v. 1.3.5 2014-11-17T11:41:45.673 USA: WA missing Illumina HiSeq University of Washington 22.0x 97.75 99.35 0.34 99.93 0.13 GCF_001075725.1 JUNJ01 1976 2051 2051 42 3 29 1 Streptococcus_constellatus_homd_HMT_576 GCA_001076785.1 HMT-577 491_NMEN Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens 491_NMEN 106 2361428 55.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/076/785/GCA_001076785.1_ASM107678v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA267549 539 SAMN03197684 ASM107678v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:17.133 USA: WA missing Illumina HiSeq University of Washington 21.0x 96.86 96.04 0.79 100 0.08 GCF_001076785.1 JVFA01 2257 2345 2345 12 21 54 1 Eikenella_corrodens_homd_HMT_577 GCA_001076955.1 HMT-411 540.rep2_SPAR Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 540.rep2_SPAR 80 2274657 41.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/076/955/GCA_001076955.1_ASM107695v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA267549 1318 SAMN03197738 ASM107695v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:20.253 USA: WA missing Illumina HiSeq University of Washington 40.0x 94.02 100 0.07 100 0.03 GCF_001076955.1 JVCY01 2174 2261 2261 45 5 36 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001076975.1 HMT-072 542_CAUR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 542_CAUR 91 2829078 59.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/076/975/GCA_001076975.1_ASM107697v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA267549 43770 SAMN03197740 ASM107697v1 Scaffold ABYSS v. 1.3.5 2014-11-17T11:41:20.360 USA: WA missing Illumina HiSeq University of Washington 31.0x 98.74 99.23 0.21 100 1.3 GCF_001076975.1 JVCW01 2610 2674 2674 9 3 51 1 Corynebacterium_striatum_homd_HMT_072 GCA_001077555.2 HMT-554 B8342 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-554 Acinetobacter baumannii B8342 1 3947826 39.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/077/555/GCA_001077555.2_ASM107755v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii PRJNA286787 470 SAMN03770534 ASM107755v2 Complete Genome SMRT v. 2.3.0; HGAP3 v. May 2015 2015-06-11T15:33:21.000 India: Vellore blood PacBio University of Kansas Medical Center 18.6x 98 100 0.33 100 0.26 GCF_001077555.2 3730 3871 3871 48 18 74 1 Acinetobacter_baumannii_homd_HMT_554 GCA_001078375.1 HMT-421 ATCC BAA-2400 Named Cultivated Oral (Abundance: Medium) HMT-421 Veillonella tobetsuensis ATCC BAA-2400 48 2161277 38.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/078/375/GCA_001078375.1_ASM107837v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella tobetsuensis PRJDB3830 1110546 SAMD00028777 ASM107837v1 Scaffold Velevt v. 1.2.08, Platanus v. 1.2.1 2015-09-16T16:58:54.000 Japan: Hokkaido Illumima HiSeq Health Sciences University of Hokkaido 500.0x 100 0.6 100 0.42 GCF_001078375.1 BBXI01 1942 2018 2018 20 7 48 1 Veillonella_tobetsuensis_homd_HMT_421 GCA_001078705.1 HMT-758 2908 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis 2908 1 2308610 43.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/078/705/GCA_001078705.1_Streptococcus_sanguinis_2908 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_D PRJEB7884 1305 SAMEA3207422 Streptococcus sanguinis 2908 Scaffold 2015-01-29T08:52:43.370 Norway human throat IMPERIAL COLLEGE LONDON 100.0x 94.31 100 0 99.98 0.08 GCF_001078705.1 CDMW01 2216 2309 2309 28 7 57 1 Streptococcus_sanguinis_homd_HMT_758 GCA_001095405.3 HMT-734 PT8105 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae PT8105 1 2147252 39.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/095/405/GCA_001095405.3_7553_6_2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJEB2632 1313 SAMEA1463109 7553_6#2 Complete Genome Prokka 2012-05-15T12:05:36.500 USA: Massachesetts nasopharynx SLX Wellcome Sanger Institute 100.0x 98.47 GCF_001095405.2 2135 2296 2296 89 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_001115245.1 HMT-425 SMRU2944 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae SMRU2944 79 2208057 39.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/115/245/GCA_001115245.1_7038_4_16 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJEB2480 257758 SAMEA1029214 7038_4#16 Contig 2012-02-09T20:48:01.860 Thailand: Maela nasopharynx SC 100.0x 97.53 99.62 0.6 99.99 0.54 GCF_001115245.1 CMGD01 2152 2268 2268 71 4 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_001121785.1 HMT-425 SMRU2248 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae SMRU2248 61 2322506 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/121/785/GCA_001121785.1_7038_8_40 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJEB2397 257758 SAMEA1026134 7038_8#40 Scaffold 2012-02-09T20:47:42.356 Thailand: Maela nasopharynx SC 100.0x 96.46 99.42 0.66 100 0.03 GCF_001121785.1 CMJT01 2241 2354 2354 73 3 36 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_001147205.1 HMT-425 type strain: N Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae type strain 119 2174085 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/147/205/GCA_001147205.1_6259_8_18 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJEB2357 257758 SAMEA974661 6259_8#18 Contig 2011-07-31T19:55:49.863 Thailand: Maela nasopharynx SC 100.0x 97.63 99.62 0.2 99.99 0.04 GCF_001147205.1 CKBD01 2112 2219 2219 69 4 33 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_001179785.1 HMT-116 CR03 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis CR03 31 2505352 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/179/785/GCA_001179785.1_CR03 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJEB9122 29388 SAMEA3358846 CR03 Contig 2015-05-27T16:19:08.983 Belgium skin of human Department of Biosecurity PCL3 30.0x 98.9 99.81 0.36 99.99 0.14 GCF_001179785.1 CVUF01 2385 2499 2499 48 4 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_001188045.2 HMT-825 FDAARGOS_57 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-825 Listeria monocytogenes FDAARGOS_57 2 2935398 38.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/188/045/GCA_001188045.2_ASM118804v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes_B PRJNA231221 1639 SAMN03255437 ASM118804v2 Complete Genome HGAP v. 2 2014-12-08T12:29:29.690 USA: NY water PacBio; Illumina US Food and Drug Administration 14.7x 99.45 0 100 0.85 GCF_001188045.2 2825 3011 3011 100 18 67 1 Listeria_monocytogenes_homd_HMT_825 GCA_001188835.1 HMT-545 NJ8700 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus NJ8700 1 2313256 42.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/188/835/GCA_001188835.1_ASM118883v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA258126 634176 SAMN02988840 ASM118883v1 Complete Genome gsMapper v. 2.9 2014-08-13T08:30:35.837 USA An oral isolate from a healthy individual Illumina MiSeq Bumgarner laboratory, Department of Microbiology, University of Washington 26.0x 96.9 99.89 0.04 100 0.07 GCF_001188835.1 2156 2288 2288 54 19 58 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_001189495.1 HMT-467 ATCC 35585 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci ATCC 35585" 1 1739380 39.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/189/495/GCA_001189495.1_ASM118949v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA282954 888727 SAMN03704030 ASM118949v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p2.144836 2015-05-21T12:25:07.000 USA: Blacksberg, VA Subgingival plaque, gingival sulcus PacBio The Forsyth Institute 382.0x 100 0.71 99.73 0.14 GCF_001189495.1 1599 1670 1670 24 6 40 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_001189515.2 HMT-807 F0089 Unnamed Cultivated Oral (Abundance: Medium) HMT-807 Olsenella sp. HMT-807 F0089 1 3213585 62.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/189/515/GCA_001189515.2_ASM118951v2 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_F;s__Olsenella_F sp001189515 PRJNA282954 712411 SAMN03785053 ASM118951v2 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p2.144836 2015-06-22T12:16:29.000 USA: Blacksberg, VA Subgingival plaque, periodontal pocket PacBio The Forsyth Institute 180.0x 100 1.41 99.43 0.96 GCF_001189515.2 2848 2914 2914 11 6 48 1 Olsenella_sp_HMT_807_homd_HMT_807 GCA_001189535.1 HMT-190 F0371 Unnamed Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-190 Arsenicicoccus sp. HMT-190 F0371 1 3525271 72.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/189/535/GCA_001189535.1_ASM118953v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Arsenicicoccus;s__Arsenicicoccus sp001189535 PRJNA282954 1658671 SAMN03704031 ASM118953v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p2.144836 2015-05-21T12:25:08.000 USA: Boston, MA Subgingival plaque, periodontal pocket PacBio The Forsyth Institute 98.0x 100 0 100 0.03 GCF_001189535.1 3247 3329 3329 24 6 51 1 GCA_001189555.1 HMT-136 F0592 Named NVP** Cultivated Oral (Abundance: Medium) HMT-136 Selenomonas felix F0592 1 2284135 57.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/189/555/GCA_001189555.1_ASM118955v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda felix PRJNA282954 712538 SAMN03704032 ASM118955v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p2.144836 2015-05-21T12:25:08.000 USA: Boston, MA Supragingival dental plaque, molar tooth PacBio The Forsyth Institute 165.0x 99.31 0.05 100 0.66 GCF_001189555.1 2076 2162 2162 17 12 56 1 Selenomonas_felix_homd_HMT_136 GCA_001190115.1 HMT-531 RHAA1 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans RHAA1 11 2233070 44.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/190/115/GCA_001190115.1_ASM119011v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans_A PRJNA258125 1089447 SAMN02988815 ASM119011v1 Contig gsMapper v. 2.9 2014-08-13T08:25:04.280 USA Unspecified Illumina MiSeq Bumgarner laboratory, Department of Microbiology, University of Washington 29.9x 93.91 99.58 0 100 0.54 GCF_001190115.1 JPZI01 2143 2258 2258 68 1 46 0 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_001190745.1 HMT-623 ATCC 33236 Named Cultivated Oral (Abundance: High) HMT-623 Campylobacter gracilis ATCC 33236 1 2281652 46.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/190/745/GCA_001190745.1_ASM119074v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B gracilis PRJNA290037 824 SAMN03862076 ASM119074v1 Complete Genome Newbler v. 2.6 2015-07-15T15:45:11.000 USA oral Sanger dideoxy sequencing; 454; Illumina USDA, ARS, WRRC 689.0x 99.99 97.47 0.43 99.93 0.11 GCF_001190745.1 2133 2187 2187 4 6 43 1 Campylobacter_gracilis_homd_HMT_623 GCA_001190755.1 HMT-842 RIGS 9880 Named Cultivated Skin (Abundance: Medium) HMT-842 Campylobacter ureolyticus RIGS 9880 1 1641887 29.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/190/755/GCA_001190755.1_ASM119075v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B ureolyticus_B PRJNA66811 1032069 SAMN03737995 ASM119075v1 Complete Genome Newbler v. 2.6 2015-05-27T17:03:40.983 Denmark Sanger dideoxy sequencing; 454; Illumina; PacBio USDA, ARS, WRRC 1841.0x 95.78 98.95 0 99.99 0.02 GCF_001190755.1 1654 1710 1710 5 6 44 1 Campylobacter_ureolyticus_homd_HMT_842 GCA_001193755.1 HMT-425 SMRU689 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae SMRU689 103 2192562 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/193/755/GCA_001193755.1_6730_6_17 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJEB2393 257758 SAMEA1025086 6730_6#17 Contig 2012-01-20T19:50:01.313 Thailand: Maela nasopharynx SC 100.0x 97.4 99.62 0.2 99.99 0.03 GCF_001193755.1 CQZX01 2147 2257 2257 71 3 35 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_001201015.1 HMT-116 CR04 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis CR04 38 2508589 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/201/015/GCA_001201015.1_CR04 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJEB8618 29388 SAMEA3271079 CR04 Contig 2015-03-19T08:05:33.740 Australia skin of human Department of Biosecurity PCL3 30.0x 98.9 99.81 0.36 99.99 0.14 GCF_001201015.1 CTEM01 2382 2497 2497 50 4 60 1 Staphylococcus_capitis_homd_HMT_116 GCA_001206055.1 HMT-425 SMRU688 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae SMRU688 92 2166568 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/206/055/GCA_001206055.1_6730_6_16 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJEB2393 257758 SAMEA1025107 6730_6#16 Contig 2012-01-20T19:50:00.640 Thailand: Maela nasopharynx SC 100.0x 97.51 99.62 0.6 99.98 0.17 GCF_001206055.1 CRAA01 2098 2208 2208 67 4 38 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_001215085.1 HMT-116 CR03 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis CR03 1 2508352 32.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/215/085/GCA_001215085.1_CR03 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJEB8618 29388 SAMEA3271078 CR03 Scaffold 2015-03-19T08:05:33.526 Belgium skin of human Department of Biosecurity PCL3 47.0x 98.9 99.81 0.36 99.99 0.14 GCF_001215085.1 CTEB01 2384 2498 2498 48 4 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_001220005.1 HMT-116 CR05 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis CR05 39 2540117 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/220/005/GCA_001220005.1_CR05 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJEB8618 29388 SAMEA3271080 CR05 Contig 2015-03-19T08:05:33.876 United Kingdom skin of human Department of Biosecurity PCL3 31.0x 98.85 99.81 0.36 100 0.15 GCF_001220005.1 CTEO01 2434 2543 2543 45 4 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_001220605.1 HMT-116 CR09 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis CR09 34 2487158 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/220/605/GCA_001220605.1_CR09 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJEB8618 29388 SAMEA3271081 CR09 Contig 2015-03-19T08:05:33.973 France skin of human Department of Biosecurity PCL3 30.0x 98.9 99.81 0.36 99.99 0.11 GCF_001220605.1 CTEL01 2360 2471 2471 47 4 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_001223985.1 HMT-120 278-10 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 278-10 25 2488619 32.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/223/985/GCA_001223985.1_7067_4_82 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJEB2705 1283 SAMEA1035081 7067_4#82 Contig 2012-02-09T20:59:16.200 Norway teat SC 107.0x 97.38 99.62 0.08 100 0.02 GCF_001223985.1 CUES01 2425 2564 2564 76 4 58 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_001225905.1 HMT-120 140376 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 140376 51 2372839 32.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/225/905/GCA_001225905.1_7068_7_60 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJEB2705 1283 SAMEA1035028 7068_7#60 Contig 2012-02-09T20:59:55.386 Switzerland blood SC 59.0x 97.14 99.62 0.76 99.97 0.44 GCF_001225905.1 CUHF01 2308 2456 2456 79 5 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_001228405.1 HMT-120 51-37 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 51-37 34 2332821 32.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/228/405/GCA_001228405.1_7067_4_60 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJEB2705 1283 SAMEA1035070 7067_4#60 Scaffold 2012-02-09T20:59:03.266 Norway wound SC 110.0x 97.3 99.62 0.14 99.84 0.06 GCF_001228405.1 CUDV01 2279 2417 2417 76 4 57 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_001228845.1 HMT-120 W59 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus W59 42 2454272 32.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/228/845/GCA_001228845.1_7068_7_21 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJEB2705 1283 SAMEA1035059 7068_7#21 Contig 2012-02-09T20:59:33.280 Japan not known SC 112.0x 97.13 99.62 0.14 99.96 0.1 GCF_001228845.1 CUFO01 2408 2547 2547 76 6 56 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_001233565.1 HMT-120 CN1197 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus CN1197 42 2331387 32.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/233/565/GCA_001233565.1_7067_4_89 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJEB2705 1283 SAMEA1035057 7067_4#89 Contig 2012-02-09T20:59:20.086 United Kingdom not known SC 104.0x 97.76 99.48 0.08 99.99 0.08 GCF_001233565.1 CUEZ01 2238 2374 2374 73 4 58 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_001237185.1 HMT-120 134634 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 134634 44 2393643 32.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/237/185/GCA_001237185.1_7068_7_50 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJEB2705 1283 SAMEA1035088 7068_7#50 Scaffold 2012-02-09T20:59:49.860 Switzerland CSF SC 58.0x 97.14 99.62 0.08 99.98 0.24 GCF_001237185.1 CUGS01 2346 2481 2481 74 4 56 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_001239225.1 HMT-120 2263-3461 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 2263-3461 18 2458332 32.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/239/225/GCA_001239225.1_7067_4_79 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJEB2705 1283 SAMEA1035109 7067_4#79 Scaffold 2012-02-09T20:59:14.420 Germany teat SC 101.0x 97.53 99.62 0.08 100 0.06 GCF_001239225.1 CUEO01 2373 2515 2515 77 5 59 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_001262015.1 HMT-782 W1435 Named Cultivated Oral (Abundance: Low) HMT-782 Prevotella fusca W1435 2 3261806 44.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/262/015/GCA_001262015.1_ASM126201v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella fusca PRJNA282954 1236517 SAMN03704035 ASM126201v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p2.144836 2015-05-21T12:25:09.000 United Kingdom: Cardiff Periodontal pocket PacBio The Forsyth Institute 117.0x 99.97 99.32 0 99.37 0.12 GCF_001262015.1 2730 2802 2802 8 13 50 1 Prevotella_fusca_homd_HMT_782 GCA_001262035.1 HMT-545 W10433 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus W10433 1 2414427 42.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/262/035/GCA_001262035.1_ASM126203v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA282954 732 SAMN03704034 ASM126203v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p2.144836 2015-05-21T12:25:09.000 United Kingdom: London Subgingival plaque, gingival sulcus PacBio The Forsyth Institute 65.0x 96.06 99.66 0.25 100 0.42 GCF_001262035.1 2169 2304 2304 56 19 59 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_001262055.1 HMT-671 W712 Named Cultivated Oral (Abundance: Low) HMT-671 Schaalia meyeri W712 1 2049088 65.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/262/055/GCA_001262055.1_ASM126205v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia meyeri PRJNA282954 52773 SAMN03704036 ASM126205v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p2.144836 2015-05-21T12:25:09.000 United Kingdom: London Periodontal pocket PacBio The Forsyth Institute 197.0x 99.02 99.76 0.47 99.99 0.07 GCF_001262055.1 1752 1817 1817 6 9 49 1 Schaalia_meyeri_homd_HMT_671 GCA_001262075.1 HMT-894 W10237 Unnamed Cultivated Oral (Abundance: Medium) HMT-894 Ottowia sp. HMT-894 W10237 1 2925783 63.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/262/075/GCA_001262075.1_ASM126207v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ottowia;s__Ottowia massiliensis PRJNA282954 1658672 SAMN03704033 ASM126207v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p2.144836 2015-05-21T12:25:08.000 United Kingdom: London Subgingival plaque, gingival sulcus PacBio The Forsyth Institute 105.0x 99.02 1.17 99.96 0.15 GCF_001262075.1 2589 2666 2666 15 9 52 1 Ottowia_sp_HMT_894_homd_HMT_894 GCA_001263815.1 HMT-619 A7436 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis A7436 1 2367029 48.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/263/815/GCA_001263815.1_ASM126381v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA276132 837 SAMN03366764 ASM126381v1 Complete Genome Velvet v. 0.7.63; Newbler v. 2.3 2015-02-23T16:23:48.450 USA: Atlanta, GA, CDC Anaerobi 454; Sanger University of Florida 57.3x 98.5 99.92 0 99.99 0.02 GCF_001263815.1 2016 2104 2104 22 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_001267395.1 HMT-880 KLDS6.0933 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-880 Enterococcus durans KLDS6.0933 3 3071804 37.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/267/395/GCA_001267395.1_ASM126739v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B durans PRJNA291957 53345 SAMN03956931 ASM126739v1 Complete Genome HGAP v. 2015-03-20 2015-08-05T04:14:46.000 China: Inner Mongolia Pacific Biosciences Northeast Agricultural University 250.0x 99.66 99.06 0.37 100 0.65 GCF_001267395.1 2948 3100 3100 65 18 68 1 Enterococcus_durans_homd_HMT_880 GCA_001267865.1 HMT-880 KLDS 6.0930 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-880 Enterococcus durans KLDS 6.0930 3 3071879 37.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/267/865/GCA_001267865.1_ASM126786v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B durans PRJNA291946 53345 SAMN03956792 ASM126786v1 Complete Genome hierarchical genome assembly process v. 2015-03-20 2015-08-04T23:35:49.000 China: inner Mongolia Pacific Biosciences Northeast Agricultural University 248.0x 99.66 99.18 0.37 99.95 0.67 GCF_001267865.1 2972 3124 3124 65 18 68 1 Enterococcus_durans_homd_HMT_880 GCA_001269845.1 HMT-612 DSM 50090 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-612 Pseudomonas fluorescens DSM 50090 17 6388150 60.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/269/845/GCA_001269845.1_ASM126984v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E fluorescens PRJNA290438 294 SAMN03891682 ASM126984v1 Contig DNASTAR v. 12 2015-07-21T09:05:19.000 United Kingdom pre-filter water-work Illumina MiSeq JLU 59.0x 99.99 99.86 0.52 100 0.02 GCF_001269845.1 LHVP01 5775 5959 5959 108 14 61 1 Pseudomonas_fluorescens_homd_HMT_612 GCA_001272795.1 HMT-732 85084 Named Cultivated Pathogen (Abundance: Scarce) HMT-732 Mycoplasmoides pneumoniae 85084 1 816404 40.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/272/795/GCA_001272795.1_ASM127279v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pneumoniae PRJNA182274 1263762 SAMN03284389 ASM127279v1 Complete Genome ABySS v. 1.3.7 2015-01-14T12:18:49.260 China throat Illumina MiSeq University of Alabama at Birmingham 99.76 99.22 0 98.2 0.11 GCF_001272795.1 1389 1432 1432 2 3 37 1 Mycoplasmoides_pneumoniae_homd_HMT_732 GCA_001272835.1 HMT-732 FH Named Cultivated Pathogen (Abundance: Scarce) HMT-732 Mycoplasmoides pneumoniae FH 1 817207 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/272/835/GCA_001272835.1_ASM127283v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pneumoniae PRJNA182276 722438 SAMN03284384 ASM127283v1 Complete Genome ABySS v. 1.3.7 2015-01-14T11:55:49.930 USA:MA sputum Illumina MiSeq University of Alabama at Birmingham 99.98 99.25 0 99.44 0.12 GCF_001272835.1 1401 1444 1444 2 3 37 1 Mycoplasmoides_pneumoniae_homd_HMT_732 GCA_001274535.1 HMT-212 W10393 Unnamed Cultivated Oral (Abundance: Medium) HMT-212 Pseudoleptotrichia sp. HMT-212 W10393 1 2444904 31.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/274/535/GCA_001274535.1_ASM127453v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia_A;s__Leptotrichia_A sp001274535 PRJNA282954 712357 SAMN03976113 ASM127453v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2015-08-10T14:28:11.000 United Kingdom: London Subgingival plaque, gingival sulcus PacBio The Forsyth Institute 159.0x 98.88 2.25 99.54 0.64 GCF_001274535.1 2299 2373 2373 15 15 43 1 Pseudoleptotrichia_sp_HMT_212_homd_HMT_212 GCA_001274615.1 HMT-619 AJW4 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis AJW4 1 2372492 48.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/274/615/GCA_001274615.1_ASM127461v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA276132 1403336 SAMN03372093 ASM127461v1 Complete Genome Velvet v. 0.7.63; Newbler v. 2.3 2015-02-24T12:58:34.713 USA: Buffalo, NY, State Univer 454; Sanger University of Florida 59.5x 98.48 99.92 0 99.99 0.03 GCF_001274615.1 2014 2091 2091 11 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_001275345.1 HMT-084 MU14/1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-084 Kocuria palustris MU14/1 1 2854447 70.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/275/345/GCA_001275345.1_ASM127534v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria palustris PRJNA293988 71999 SAMN04012814 ASM127534v1 Complete Genome HGAP v. v 2 2015-08-26T14:26:25.267 USA: Missouri, Columbia culture contaminant PacBio University of Missouri - Columbia 100.0x 98.36 99.34 0 99.98 0.39 GCF_001275345.1 2477 2560 2560 25 9 48 1 Kocuria_palustris_homd_HMT_084 GCA_001275565.2 HMT-822 SCAID 187.0 Named Cultivated Pathogen (Abundance: Scarce) HMT-822 Mycobacterium tuberculosis SCAID 187.0 1 4411829 65.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/275/565/GCA_001275565.2_ASM127556v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium tuberculosis PRJNA291131 1773 SAMN03921880 ASM127556v2 Complete Genome 2015-07-24T07:11:23.450 Kazakhstan: Karagandy sputum of patient with MDR-TB Scientific Center for Anti-infectious Drugs (SCAID) 99.91 99.94 0 100 0.43 GCF_001275565.2 4072 4128 0 0 3 52 1 Mycobacterium_tuberculosis_homd_HMT_822 GCA_001278825.1 HMT-700 F0383 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea F0383 1 2614527 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/278/825/GCA_001278825.1_ASM127882v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA282954 1705617 SAMN04009744 ASM127882v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2015-08-24T20:13:28.000 USA: Boston, MA Supragingival dental plaque, molar tooth PacBio The Forsyth Institute 211.0x 100 0 99.99 0.06 GCF_001278825.1 2232 2300 2300 8 12 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_001278845.1 HMT-414 F0588 Unnamed Cultivated Oral (Abundance: Low) HMT-414 Actinomyces sp. HMT-414 F0588 1 3836419 71.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/278/845/GCA_001278845.1_ASM127884v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp001278845 PRJNA282954 712122 SAMN04009745 ASM127884v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2015-08-24T20:13:28.000 USA: Boston, MA Supragingival dental plaque, molar tooth PacBio The Forsyth Institute 52.0x 99.53 1.66 100 0.76 GCF_001278845.1 3094 3166 3166 14 6 51 1 GCA_001279145.1 HMT-718 215035-2-ISO5 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 215035-2-ISO5 18 1978346 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/279/145/GCA_001279145.1_ASM127914v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp014931275 PRJNA288973 729 SAMN03840570 ASM127914v1 Contig CLC NGS Cell v. 4.2.1 2015-07-06T13:36:07.000 USA: Oklahoma Oropharynx Illumina MiSeq University of Oklahoma Health Sciences Center 217.0x 93.32 99.84 0.18 100 0.95 GCF_001279145.1 LFXN01 1879 1954 1954 23 3 48 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001281025.1 HMT-677 KCOM 1350 (= ChDC B183) Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis KCOM 1350 (= ChDC B183) 1 1906344 40.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/281/025/GCA_001281025.1_ASM128102v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AK PRJNA270122 28037 SAMN03263069 ASM128102v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T20:57:48.603 Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 94.63 99.42 0.6 99.97 0.12 GCF_001281025.1 1805 1900 1900 39 9 46 1 Streptococcus_mitis_homd_HMT_677 GCA_001281065.1 HMT-530 KCOM 1861 (= ChDC B594) Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes KCOM 1861 (= ChDC B594) 1 2522438 59.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/281/065/GCA_001281065.1_ASM128106v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA270126 1747 SAMN03263080 ASM128106v1 Complete Genome ALLPATHS_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T21:32:09.360 Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 99.94 100 0 99.97 0.06 GCF_001281065.1 2328 2418 2418 25 18 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_001281105.1 HMT-622 KCOM 1506 (= ChDC B679) Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii KCOM 1506 (= ChDC B679) 1 2283306 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/281/105/GCA_001281105.1_ASM128110v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA270133 1302 SAMN03263085 ASM128110v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T21:47:33.223 Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 95.28 100 0 100 0.05 GCF_001281105.1 2165 2291 2291 28 15 82 1 Streptococcus_gordonii_homd_HMT_622 GCA_001281465.1 HMT-027 CR3 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-027 Cupriavidus gilardii CR3 2 5578743 67.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/281/465/GCA_001281465.1_ASM128146v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus;s__Cupriavidus gilardii PRJNA183450 1267562 SAMN02665997 ASM128146v1 Complete Genome HGAP v. 3 2014-02-26T21:50:53.210 USA: Rancho La Brea, Los Angel Tar Pits PacBio Key Laboratory for Wetland Ecology and Vegetation Restoration of National Environmental Protection, Norhteast Normal Univesity, China 43.5x 99.86 98.92 0.29 100 1.58 GCF_001281465.1 5127 5226 5226 21 12 65 1 Cupriavidus_gilardii_homd_HMT_027 GCA_001281505.1 HMT-173 X1698 Named Cultivated Nasal (Abundance: Medium) HMT-173 Lawsonella clevelandensis X1698 1 1915154 58.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/281/505/GCA_001281505.1_ASM128150v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Lawsonella;s__Lawsonella clevelandensis PRJNA256353 1528099 SAMN03943545 ASM128150v1 Complete Genome CLC Genomics Workbench v. October 2014; manual curation v. October 2014 2015-07-29T10:46:24.000 USA: Cleveland, OH peritoneal abscess Illumina HiSeq CDC 625.0x 99.46 95 0 99.99 0.11 GCF_001281505.1 1636 1695 1695 6 6 46 1 Lawsonella_clevelandensis_homd_HMT_173 GCA_001293125.1 HMT-173 X1036 Named Cultivated Nasal (Abundance: Medium) HMT-173 Lawsonella clevelandensis X1036 1 1860551 58.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/293/125/GCA_001293125.1_ASM129312v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Lawsonella;s__Lawsonella clevelandensis PRJNA256353 1528099 SAMN02943398 ASM129312v1 Complete Genome CLC NGS Cell v. V7.04 2014-07-28T15:54:50.230 USA: Cleveland, OH abscess Illumina HiSeq CDC 600.0x 95 0 99.98 0.14 GCF_001293125.1 1582 1642 1642 6 6 47 1 Lawsonella_clevelandensis_homd_HMT_173 GCA_001296085.1 HMT-420 KCOM 1279 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM 1279 1 2549353 26.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/296/085/GCA_001296085.1_ASM129608v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA270143 76859 SAMN03263149 ASM129608v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-12T00:02:11.220 South Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 96.87 100 0 99.99 0.2 GCF_001296085.1 2385 2462 2462 23 14 39 1 Fusobacterium_animalis_homd_HMT_420 GCA_001296125.1 HMT-200 KCOM 1231 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii KCOM 1231 1 2038535 27.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/296/125/GCA_001296125.1_ASM129612v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA270144 1307427 SAMN03263151 ASM129612v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-12T00:08:14.783 South Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 97.47 100 0 99.99 0.03 GCF_001296125.1 1866 1941 1941 20 15 39 1 Fusobacterium_vincentii_homd_HMT_200 GCA_001296145.1 HMT-420 KCOM 1325 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM 1325 1 2310804 27.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/296/145/GCA_001296145.1_ASM129614v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA270152 76859 SAMN03263585 ASM129614v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-12T01:55:34.730 South Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 96.91 100 0 100 0.13 GCF_001296145.1 2187 2262 2262 19 15 40 1 Fusobacterium_animalis_homd_HMT_420 GCA_001296165.1 HMT-698 KCOM 1322 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM 1322 1 2227266 27.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/296/165/GCA_001296165.1_ASM129616v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA270149 1307428 SAMN03263583 ASM129616v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-12T01:39:19.960 South Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 98.89 100 0 100 0.11 GCF_001296165.1 2110 2182 2182 18 13 40 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_001296185.1 HMT-698 KCOM 1250 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM 1250 1 2290405 27.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/296/185/GCA_001296185.1_ASM129618v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA270140 76856 SAMN03263147 ASM129618v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T23:42:18.743 South Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 98.87 100 0 100 0.26 2157 2227 2227 18 13 38 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_001296205.1 HMT-644 KCOM 1545 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius KCOM 1545 1 1908201 37.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/296/205/GCA_001296205.1_ASM129620v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA270135 1338 SAMN03263087 ASM129620v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T22:21:18.527 South Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 98.33 100 0 100 0.2 1835 1910 1910 36 6 32 1 Streptococcus_intermedius_homd_HMT_644 GCA_001297745.1 HMT-619 Ando Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis Ando 112 2229994 48.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/297/745/GCA_001297745.1_ASM129774v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJDB4201 837 SAMD00040429 ASM129774v1 Scaffold Velvet v. 1.2.08 2015-09-07T11:05:05.723 Japan Illumina HiSeq 2000 Lab. of Plant Genomics and Genetics, Department of Plant Genome Research, Kazusa DNA Research Institute 224.0x 98.6 99.45 0 99.98 0.04 GCF_001297745.1 BCBV01 1877 1940 1940 11 4 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_001298325.2 HMT-550 BA01611 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus BA01611 1 2885865 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/298/325/GCA_001298325.2_ASM129832v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA293604 1280 SAMN04008874 ASM129832v2 Complete Genome SOAPdenovo v. 2.2.1 2015-08-22T09:50:13.150 China: Shannxi milk Illumina HiSeq Northwest A&F University 120.0x 99.03 99.41 0.35 100 0.16 GCF_001298325.2 2700 2888 2888 113 16 58 1 Staphylococcus_aureus_homd_HMT_550 GCA_001298465.1 HMT-575 ATCC 33237 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 ATCC 33237 1 1840041 37.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/298/465/GCA_001298465.1_ASM129846v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJNA275352 199 SAMN03342362 ASM129846v1 Complete Genome Newbler v. 2.6 2015-02-12T17:30:14.683 USA Gingival sulcus Sanger dideoxy sequencing; 454; Illumina; PacBio Olivier Vandenberg 1177.0x 99.88 0 99.89 0.02 GCF_001298465.1 1846 1904 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_001298465.1 HMT-575 ATCC 33237 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 ATCC 33237 1 1840041 37.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/298/465/GCA_001298465.1_ASM129846v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJNA275352 199 SAMN03342362 ASM129846v1 Complete Genome Newbler v. 2.6 2015-02-12T17:30:14.683 USA Gingival sulcus Sanger dideoxy sequencing; 454; Illumina; PacBio Olivier Vandenberg 1177.0x 99.88 0 99.89 0.02 GCF_001298465.1 1846 1904 0 4 6 47 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_001298675.1 HMT-211 R-24608 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-211 Paenacidovorax caeni R-24608 152 4190928 65.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/298/675/GCA_001298675.1_Draft_Genome d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenacidovorax;s__Paenacidovorax caeni PRJEB10565 343013 SAMEA3520081 Draft Genome Contig 2015-09-16T11:05:31.703 Department Biochemical and Microbial Technology 84.0x 99.99 99.07 0.75 100 0.37 GCF_001298675.1 CYIG01 3807 3891 3891 26 5 52 1 Paenacidovorax_caeni_homd_HMT_211 GCA_001307855.1 HMT-028 Paddy-1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-028 Oryzomicrobium terrae Paddy-1 50 3554045 65.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/307/855/GCA_001307855.1_ASM130785v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Oryzomicrobium;s__Oryzomicrobium terrae PRJNA291117 1691980 SAMN03940017 ASM130785v1 Scaffold Velvet v. 2.3 2015-07-27T22:08:18.787 China: Guangzhou, Guangdong Pr Paddy soil field Illumina HiSeq Guangdong Institute of Eco-Environmental and Soil Sciences 4000.0x 99.53 0.47 100 0.02 GCF_001307855.1 LGUD01 3119 3191 3191 15 3 53 1 Oryzomicrobium_terrae_homd_HMT_028 GCA_001310935.1 HMT-601 JCM 2414 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis JCM 2414 44 2302683 32.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/310/935/GCA_001310935.1_ASM131093v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJDB677 1236978 SAMD00000465 ASM131093v1 Contig Newbler v. 2.8 2015-10-07T01:01:24.000 NA Ion PGM The University of Tokyo 57.0x 99.99 99.46 0 99.45 0.03 GCF_001310935.1 BAZV01 2171 2300 2300 67 4 57 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_001311355.1 HMT-418 JCM 14109 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-418 Lentilactobacillus parafarraginis JCM 14109 236 3101821 45.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/311/355/GCA_001311355.1_ASM131135v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus parafarraginis PRJDB773 1423786 SAMD00000440 ASM131135v1 Contig Newbler v. 2.8 2015-10-07T01:01:10.000 missing Ion PGM The University of Tokyo 64.0x 99.93 93.14 0.94 89.57 5.56 GCF_001311355.1 BBAR01 3543 3656 3656 54 3 55 1 Lentilactobacillus_parafarraginis_homd_HMT_418 GCA_001311425.1 HMT-424 JCM 15041 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-424 Lentilactobacillus kisonensis JCM 15041 108 3009421 41.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/311/425/GCA_001311425.1_ASM131142v1 Undefined PRJDB776 1423766 SAMD00000447 ASM131142v1 Contig Newbler v. 2.8 2015-10-07T01:01:13.000 missing Ion PGM The University of Tokyo 26.0x 99.85 GCF_001311425.1 BBAU01 3922 4021 4021 40 3 55 1 Lentilactobacillus_kisonensis_homd_HMT_424 GCA_001311445.1 HMT-884 JCM 15042 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-884 Lentilactobacillus rapi JCM 15042 105 2844001 42.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/311/445/GCA_001311445.1_ASM131144v1 Undefined PRJDB777 1423795 SAMD00000448 ASM131144v1 Contig Newbler v. 2.8 2015-10-07T01:01:14.000 missing Ion PGM The University of Tokyo 28.0x 99.85 GCF_001311445.1 BBAV01 3700 3802 3802 44 2 55 1 Lentilactobacillus_rapi_homd_HMT_884 GCA_001314265.1 HMT-619 381 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 381 1 2378872 48.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/314/265/GCA_001314265.1_ASM131426v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA276132 1403335 SAMN03656156 ASM131426v1 Complete Genome Velvet v. 0.7.63 and Newbler v. 2.3 2015-05-13T13:58:04.137 USA: Boston, MA, Forsyth Denta 454 GS20 shotgun and paired-end reads University of Florida 49.5x 99.99 99.82 0 99.93 0.1 GCF_001314265.1 1993 2073 2073 14 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_001314975.1 HMT-970 7330 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-970 Bacteroides thetaiotaomicron 7330 1 6487685 42.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/314/975/GCA_001314975.1_ASM131497v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron PRJNA289334 818 SAMN03852684 ASM131497v1 Complete Genome HGAP 2.0 and Celera v. AUG-2014 2015-07-09T11:13:09.000 USA:Woods Hole feces Illumina MiSeq; PacBio Washington University in St. Louis 395.0x 99.04 99.41 0.24 99.99 0.77 GCF_001314975.1 5071 5194 5194 35 16 71 1 Bacteroides_thetaiotaomicron_homd_HMT_970 GCA_001314995.1 HMT-968 ATCC 8483 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-968 Bacteroides ovatus ATCC 8483 1 6472489 41.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/314/995/GCA_001314995.1_ASM131499v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus PRJNA289334 28116 SAMN03852683 ASM131499v1 Complete Genome HGAP 2.0 and Celera v. AUG-2014 2015-07-09T11:11:06.000 USA:Woods Hole feces PacBio; Illumina MiSeq Washington University in St. Louis 350.0x 99.99 99.46 0.12 99.97 0.52 GCF_001314995.1 4910 5017 5017 21 15 70 1 Bacteroides_ovatus_homd_HMT_968 GCA_001336595.1 HMT-425 type strain: N Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae type strain 74 2091536 39.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/336/595/GCA_001336595.1_6259_5_22 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJEB2357 257758 SAMEA974647 6259_5#22 Scaffold 2011-07-31T19:54:54.193 Thailand: Maela nasopharynx SC 100.0x 98.12 99.82 0.2 99.98 0.08 GCF_001336595.1 CGVP01 2035 2140 2140 64 4 36 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_001337855.1 HMT-425 SMRU856 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae SMRU856 98 2162506 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/337/855/GCA_001337855.1_6775_2_16 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJEB2393 257758 SAMEA1024695 6775_2#16 Contig 2012-01-20T19:51:52.043 Thailand: Maela nasopharynx SC 100.0x 97.52 99.58 0.2 99.98 0.08 GCF_001337855.1 CHTX01 2092 2199 2199 64 4 38 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_001339755.1 HMT-425 SMRU737 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae SMRU737 78 2229425 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/339/755/GCA_001339755.1_6730_8_17 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJEB2393 257758 SAMEA1025033 6730_8#17 Scaffold 2012-01-20T19:50:33.856 Thailand: Maela nasopharynx SC 100.0x 97.4 99.62 0.2 99.99 0.05 GCF_001339755.1 CFGT01 2167 2278 2278 70 4 36 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_001374975.1 HMT-536 ATCC 9027 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-536 Pseudomonas aeruginosa ATCC 9027 73 6491764 66.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/374/975/GCA_001374975.1_259_Rw151_contigs_500 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa PRJEB8749 2994495 SAMEA3296558 259_Rw151_contigs_500 Contig 2015-03-26T11:05:21.483 CARDIFF UNIVERSITY 29.0x 93.57 99.68 0.11 100 0.11 GCF_001374975.1 CTDU01 5889 6074 6074 121 3 60 1 Pseudomonas_aeruginosa_homd_HMT_536 GCA_001402715.1 HMT-857 B41 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-857 Rhodobacter capsulatus B41 64 3675736 66.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/402/715/GCA_001402715.1_ASM140271v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter;s__Rhodobacter capsulatus PRJNA298686 1061 SAMN04166217 ASM140271v1 Scaffold A5-miseq v. OCT-2015 2015-10-14T09:16:17.163 Turkey Illumina HiSeq Istanbul Technical University, Institute of Science 180.0x 99.98 98.79 0.56 100 0.44 GCF_001402715.1 LLVU01 3451 3538 3538 27 3 56 1 Rhodobacter_capsulatus_homd_HMT_857 GCA_001402725.1 HMT-857 A52 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-857 Rhodobacter capsulatus A52 70 3607570 66.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/402/725/GCA_001402725.1_ASM140272v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter;s__Rhodobacter capsulatus PRJNA298689 1061 SAMN04166236 ASM140272v1 Scaffold A5-miseq v. OCT-2015 2015-10-14T09:37:19.763 Turkey Illumina HiSeq Istanbul Technical University, Institute of Science 180.0x 99.98 98.79 0.56 100 0.45 GCF_001402725.1 LLVV01 3389 3471 3471 26 3 52 1 Rhodobacter_capsulatus_homd_HMT_857 GCA_001405855.1 HMT-964 2789STDY5834947 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-964 Alistipes onderdonkii 2789STDY5834947 8 3215546 58.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/405/855/GCA_001405855.1_14207_7_70 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii PRJEB10915 214856 SAMEA3545410 14207_7#70 Scaffold 2015-09-23T14:07:35.526 United Kingdom feces SC 100.0x 86.52 99.28 0.48 99.99 0.26 GCF_001405855.1 CZBZ01 2638 2706 2706 14 3 50 1 Alistipes_onderdonkii_homd_HMT_964 GCA_001411485.1 HMT-071 89a Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 89a 21 1928943 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/411/485/GCA_001411485.1_ASM141148v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA297767 1303 SAMN04123206 ASM141148v1 Scaffold CLC Genomic Workbench v. 8.0 2015-09-30T02:42:29.000 Sweden: Umea throat from healthy child Illumina HiSeq The University of Queensland 80.0x 93.31 99.83 0.6 100 0.06 GCF_001411485.1 LKPC01 1830 1919 1919 40 3 45 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_001411485.1 HMT-071 89a Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 89a 21 1928943 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/411/485/GCA_001411485.1_ASM141148v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA297767 1303 SAMN04123206 ASM141148v1 Scaffold CLC Genomic Workbench v. 8.0 2015-09-30T02:42:29.000 Sweden: Umea throat from healthy child Illumina HiSeq The University of Queensland 80.0x 93.31 99.83 0.6 100 0.06 GCF_001411485.1 LKPC01 1830 1919 1919 40 3 45 1 Streptococcus_oralis_HMT_071_398_707 GCA_001411495.1 HMT-571 UCB 717 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-571 Burkholderia cepacia UCB 717 4 8605945 66.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/411/495/GCA_001411495.1_ASM141149v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia cepacia PRJNA298860 983594 SAMN04167160 ASM141149v1 Complete Genome RS HGAP Assembly Protocol v.2.0 in SMRT analysis v. 2.3.0 2015-10-15T08:55:23.000 missing PacBio Kyungpook National University 100.4x 99.99 100 0.74 100 0.06 GCF_001411495.1 7754 7914 7914 60 18 81 1 Burkholderia_cepacia_homd_HMT_571 GCA_001412635.1 HMT-543 J4211 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus J4211 1 1924513 38.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/412/635/GCA_001412635.1_ASM141263v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA282763 1328 SAMN03577772 ASM141263v1 Complete Genome Geneious v. 6.1.8 2015-04-30T17:17:07.000 USA: San Antonio Hospital isolate Illumina University of Oklahoma Health Sciences Center 619.0x 95.66 100 0.18 99.99 0.13 GCF_001412635.1 1893 2006 2006 40 12 60 1 Streptococcus_anginosus_homd_HMT_543 GCA_001422025.1 HMT-037 Leaf70 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-037 Stenotrophomonas nitritireducens Leaf70 11 4032657 68.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/422/025/GCA_001422025.1_Leaf70 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas nitritireducens PRJNA297956 1736233 SAMN04151613 Leaf70 Scaffold A5 v. 20140604 2015-10-07T09:29:21.000 Switzerland:Zurich Illumina HiSeq Max Planck Institute for Plant Breeding Research 300.0x 99.47 0.61 100 0.01 GCF_001422025.1 LMLT01 3502 3696 3696 128 3 62 1 Stenotrophomonas_nitritireducens_homd_HMT_037 GCA_001423805.1 HMT-185 Leaf347 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-185 Microbacterium ginsengisoli Leaf347 34 2942136 70.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/423/805/GCA_001423805.1_Leaf347 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium ginsengisoli PRJNA297956 1736347 SAMN04151737 Leaf347 Contig A5 v. 20140605 2015-10-07T09:29:28.000 Switzerland:Zurich Illumina HiSeq Max Planck Institute for Plant Breeding Research 300.0x 98.48 0 100 0.07 GCF_001423805.1 LMPI01 2807 2871 2871 7 3 53 1 Microbacterium_ginsengisoli_homd_HMT_185 GCA_001431425.1 HMT-037 DSM 12575 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-037 Stenotrophomonas nitritireducens DSM 12575 95 3983487 68.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/431/425/GCA_001431425.1_ASM143142v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas nitritireducens PRJNA284361 83617 SAMN03701629 ASM143142v1 Contig CLC NGS Cell v. 7.5 2015-05-19T10:37:08.000 Germany Laboratory scale biofilters supplied with ammonia or dimethyl disulfide and ammo Illumina MiSeq CSIR-Institute of Microbial Technology 141.0x 95.5 0.78 100 0.12 GCF_001431425.1 LDJG01 3458 3643 3643 122 3 59 1 Stenotrophomonas_nitritireducens_homd_HMT_037 GCA_001433735.1 HMT-716 DSM 20011 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-716 Lacticaseibacillus paracasei DSM 20011 139 2820682 46.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/433/735/GCA_001433735.1_ASM143373v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei PRJNA222257 1423732 SAMN02369372 ASM143373v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:46.056 - cheese Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 83.85 98.37 0 99.98 0.53 GCF_001433735.1 AZCO01 2704 2800 2800 38 5 52 1 Lacticaseibacillus_paracasei_homd_HMT_716 GCA_001433755.1 HMT-883 DSM 20314 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-883 Lactiplantibacillus pentosus DSM 20314 60 3647705 46.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/433/755/GCA_001433755.1_ASM143375v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus PRJNA222257 1423791 SAMN02369484 ASM143375v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:51.833 - Corn silage Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 97.22 2.16 99.99 0.89 GCF_001433755.1 AZCU01 3272 3391 3391 43 6 69 1 Lactiplantibacillus_pentosus_homd_HMT_883 GCA_001433855.1 HMT-558 DSM 20054 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-558 Levilactobacillus brevis DSM 20054 11 2474438 46.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/433/855/GCA_001433855.1_ASM143385v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis PRJNA222257 649758 SAMN02369420 ASM143385v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:48.533 - feces Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 99.06 0.16 99.99 0.1 GCF_001433855.1 AZCP01 2423 2519 2519 30 4 61 1 Levilactobacillus_brevis_homd_HMT_558 GCA_001433895.1 HMT-529 DSM 20079 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-529 Lactobacillus acidophilus DSM 20079 30 1954043 34.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/433/895/GCA_001433895.1_ASM143389v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus PRJNA222257 1423717 SAMN02369388 ASM143389v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:46.893 - Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 98.94 0.06 99.93 0.52 GCF_001433895.1 AZCS01 1877 1966 1966 40 3 45 1 Lactobacillus_acidophilus_homd_HMT_529 GCA_001433955.1 HMT-202 ChDC F306 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum ChDC F306 3 2622370 26.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/433/955/GCA_001433955.1_ASM143395v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA270146 76857 SAMN03263152 ASM143395v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-12T00:21:33.540 South Korea: Gwangju subgingival dental plaque Illumina HiSeq Chosun University 1331.0x 96.9 100 0 100 0.51 GCF_001433955.1 2498 2585 2585 26 13 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_001433975.1 HMT-819 ATCC 33200 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-819 Lactobacillus johnsonii ATCC 33200 37 1773599 34.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/433/975/GCA_001433975.1_ASM143397v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii PRJNA222257 525330 SAMN02369381 ASM143397v1 Contig SOAPdenovo v. 2 2013-09-29T22:32:46.516 - blood Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.98 99.22 0 99.99 0.08 GCF_001433975.1 AZCY01 1767 1845 1845 31 5 41 1 Lactobacillus_johnsonii_homd_HMT_819 GCA_001434005.1 HMT-817 DSM 20584 Named Cultivated Vaginal (Abundance: High) HMT-817 Lactobacillus crispatus DSM 20584 150 2057071 36.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/434/005/GCA_001434005.1_ASM143400v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus crispatus PRJNA222257 1423736 SAMN02369387 ASM143400v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:46.830 - eye Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 99.03 0.09 99.89 0.07 GCF_001434005.1 AZCW01 2017 2104 2104 37 3 46 1 Lactobacillus_crispatus_homd_HMT_817 GCA_001434135.1 HMT-424 DSM 19906 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-424 Lentilactobacillus kisonensis DSM 19906 122 3006215 41.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/434/135/GCA_001434135.1_ASM143413v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus kisonensis PRJNA222257 1423766 SAMN02369458 ASM143413v1 Contig SOAPdenovo v. 2 2013-09-29T22:32:50.496 Japan non-salted pickle solution used in production of sunki (Japanese traditional fer Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.85 99.25 0.21 99.44 1.15 GCF_001434135.1 AZEB01 2758 2849 2849 40 3 47 1 Lentilactobacillus_kisonensis_homd_HMT_424 GCA_001434175.1 HMT-861 CGMCC 1.2437 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-861 Lactiplantibacillus plantarum CGMCC 1.2437 48 3208905 44.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/434/175/GCA_001434175.1_ASM143417v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum PRJNA222257 525338 SAMN02369435 ASM143417v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:49.286 - pickled cabbage Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 99.07 2.78 100 0.56 GCF_001434175.1 AZEJ01 3006 3101 3101 41 2 51 1 Lactiplantibacillus_plantarum_homd_HMT_861 GCA_001434465.1 HMT-709 DSM 4864 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-709 Limosilactobacillus oris DSM 4864 75 2031774 49.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/434/465/GCA_001434465.1_ASM143446v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus oris PRJNA222257 1423779 SAMN02369408 ASM143446v1 Contig SOAPdenovo v. 2 2013-09-29T22:32:47.923 - saliva Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.45 0 99.95 0.64 GCF_001434465.1 AZGE01 1925 2003 2003 23 2 52 1 Limosilactobacillus_oris_homd_HMT_709 GCA_001434615.1 HMT-818 DSM 20016 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-818 Limosilactobacillus reuteri DSM 20016 150 1935860 38.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/434/615/GCA_001434615.1_ASM143461v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus reuteri PRJNA222257 557436 SAMN02369412 ASM143461v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:48.133 - intestine of adult Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.98 99.45 0 99.93 0.39 GCF_001434615.1 AZDD01 1908 2002 2002 39 2 52 1 Limosilactobacillus_reuteri_homd_HMT_818 GCA_001434735.1 HMT-881 DSM 20057 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-881 Lentilactobacillus buchneri DSM 20057 90 2446657 44.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/434/735/GCA_001434735.1_ASM143473v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri PRJNA222257 1423728 SAMN02369438 ASM143473v1 Contig SOAPdenovo v. 2 2013-09-29T22:32:49.426 - tomato pulp Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 99.06 0 100 0.45 GCF_001434735.1 AZDM01 2345 2438 2438 40 2 50 1 Lentilactobacillus_buchneri_homd_HMT_881 GCA_001435015.1 HMT-838 DSM 13335 Named Cultivated Vaginal (Abundance: High) HMT-838 Lactobacillus iners DSM 13335 58 1267657 32.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/015/GCA_001435015.1_ASM143501v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners PRJNA222257 525328 SAMN02369401 ASM143501v1 Contig SOAPdenovo v. 2 2013-09-29T22:32:47.560 Sweden urine Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.97 99.41 0.44 99.89 0.05 GCF_001435015.1 AZET01 1189 1258 1258 23 4 41 1 Lactobacillus_iners_homd_HMT_838 GCA_001435215.1 HMT-861 DSM 16365 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-861 Lactiplantibacillus plantarum DSM 16365 210 3186310 45.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/215/GCA_001435215.1_ASM143521v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum PRJNA222257 1423831 SAMN02369470 ASM143521v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:51.130 Nigeria fermented cassava roots (fufu) Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.98 99.38 2.78 100 0.47 GCF_001435215.1 AZFR01 2939 3010 0 0 4 66 1 Lactiplantibacillus_plantarum_homd_HMT_861 GCA_001435405.1 HMT-749 DSM 20021 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-749 Lacticaseibacillus rhamnosus DSM 20021 38 2949099 46.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/405/GCA_001435405.1_ASM143540v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus PRJNA222257 1423797 SAMN02369512 ASM143540v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:53.240 - - Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 99.35 0 99.97 0.04 GCF_001435405.1 AZCQ01 2721 2816 2816 32 7 55 1 Lacticaseibacillus_rhamnosus_homd_HMT_749 GCA_001435895.1 HMT-418 DSM 18390 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-418 Lentilactobacillus parafarraginis DSM 18390 254 3081674 45.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/895/GCA_001435895.1_ASM143589v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus parafarraginis PRJNA222257 1423786 SAMN02369507 ASM143589v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:52.986 Japan composting material of distilled shochun residue Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.94 98.78 0.62 99.98 1.59 GCF_001435895.1 AZFZ01 2921 3031 3031 53 3 53 1 Lentilactobacillus_parafarraginis_homd_HMT_418 GCA_001435915.1 HMT-051 DSM 5837 Named Cultivated Vaginal (Abundance: Low) HMT-051 Limosilactobacillus vaginalis DSM 5837 149 1787468 40.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/915/GCA_001435915.1_ASM143591v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus vaginalis PRJNA222257 1423814 SAMN02369417 ASM143591v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:48.380 - vaginal swab from patient with trichomoniasis Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.95 99.46 1.09 99.9 0.26 GCF_001435915.1 AZGL01 1738 1827 1827 38 3 47 1 Limosilactobacillus_vaginalis_homd_HMT_051 GCA_001435935.1 HMT-882 DSM 6035 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-882 Limosilactobacillus panis DSM 6035 150 2006512 48.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/935/GCA_001435935.1_ASM143593v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus panis PRJNA222257 1423782 SAMN02369492 ASM143593v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:52.233 Germany sourdough Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.97 99.46 2.17 99.21 1.71 GCF_001435935.1 AZGM01 1903 1999 1999 31 5 59 1 Limosilactobacillus_panis_homd_HMT_882 GCA_001435955.1 HMT-756 DSM 20555 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-756 Ligilactobacillus salivarius DSM 20555 62 1982601 32.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/955/GCA_001435955.1_ASM143595v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius PRJNA222257 1423799 SAMN02369414 ASM143595v1 Contig SOAPdenovo v. 2 2013-09-29T22:32:48.240 - saliva Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.98 99.48 0 99.99 0.07 GCF_001435955.1 AYYT01 1920 1988 1988 38 4 25 1 Ligilactobacillus_salivarius_homd_HMT_756 GCA_001436255.1 HMT-884 DSM 19907 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-884 Lentilactobacillus rapi DSM 19907 87 2854844 42.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/436/255/GCA_001436255.1_ASM143625v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus rapi PRJNA222257 1423795 SAMN02369472 ASM143625v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:51.236 Japan non-salted pickle solution used in production of sunki (Japanese traditional fer Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 98.94 0.21 99.78 0.38 GCF_001436255.1 AZEI01 2644 2748 2748 44 3 56 1 Lentilactobacillus_rapi_homd_HMT_884 GCA_001436305.1 HMT-461 DSM 16047 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-461 Lactobacillus ultunensis DSM 16047 105 2161766 35.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/436/305/GCA_001436305.1_ASM143630v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus ultunensis PRJNA222257 525365 SAMN02369416 ASM143630v1 Contig SOAPdenovo v. 2 2013-09-29T22:32:48.333 Sweden gastric biopsies, stomach mucosa Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.97 99.03 0 99.97 0.14 GCF_001436305.1 AZFO01 2100 2178 2178 37 3 37 1 Lactobacillus_ultunensis_homd_HMT_461 GCA_001436385.1 HMT-716 DSM 5622 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-716 Lacticaseibacillus paracasei DSM 5622 170 2881963 46.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/436/385/GCA_001436385.1_ASM143638v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei PRJNA222257 525337 SAMN02369433 ASM143638v1 Contig SOAPdenovo v. 2 2013-09-29T22:32:49.183 - - Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.97 99.46 0 99.98 0.28 GCF_001436385.1 AZGH01 2776 2861 2861 32 3 49 1 Lacticaseibacillus_paracasei_homd_HMT_716 GCA_001436455.1 HMT-839 DSM 20557 Named Cultivated Vaginal (Abundance: High) HMT-839 Lactobacillus jensenii DSM 20557 99 1610627 34.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/436/455/GCA_001436455.1_ASM143645v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus jensenii PRJNA222257 1423762 SAMN02369404 ASM143645v1 Scaffold SOAPdenovo v. 2 2013-09-29T22:32:47.730 - vaginal discharge Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 98.83 0 99.95 0.14 GCF_001436455.1 AYYU01 1478 1533 1533 18 3 33 1 Lactobacillus_jensenii_homd_HMT_839 GCA_001437015.1 HMT-674 DSM 20586 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-674 Atopobium minutum DSM 20586 46 1719821 48.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/437/015/GCA_001437015.1_ASM143701v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium;s__Atopobium minutum PRJNA222257 1381 SAMN02797803 ASM143701v1 Scaffold SOAPdenovo v. 2 2014-05-22T02:41:01.196 missing - Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.98 100 0 99.92 0.68 GCF_001437015.1 JQBO01 1552 1613 1613 9 6 45 1 Atopobium_minutum_homd_HMT_674 GCA_001437585.1 HMT-038 DSM 7084 Named Cultivated Oral (Abundance: Scarce) HMT-038 Olsenella uli DSM 7084 13 2057128 64.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/437/585/GCA_001437585.1_ASM143758v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella;s__Olsenella uli PRJNA222257 633147 SAMN02797808 ASM143758v1 Scaffold SOAPdenovo v. 2 2014-05-22T02:41:01.510 missing - Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 99.19 0 99 0.35 GCF_001437585.1 JQCO01 1763 1838 1838 11 3 60 1 Olsenella_uli_homd_HMT_038 GCA_001438885.1 HMT-750 DSM 7090 Named Cultivated Oral (Abundance: Medium) HMT-750 Lancefieldella rimae DSM 7090 9 1629936 49.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/438/885/GCA_001438885.1_ASM143888v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__Lancefieldella rimae PRJNA222257 1383 SAMN02797791 ASM143888v1 Scaffold SOAPdenovo v. 2 2014-05-22T02:41:00.066 missing Illumina MiSeq; Illumina HiSeq Shanghai Majorbio 100.0x 99.99 100 0 99.55 0.51 GCF_001438885.1 JQCP01 1474 1531 1531 8 3 46 0 Lancefieldella_rimae_homd_HMT_750 GCA_001444325.1 HMT-619 A7A1-28 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis A7A1-28 1 2249024 48.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/444/325/GCA_001444325.1_ASM144432v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA276132 1403338 SAMN03653671 ASM144432v1 Complete Genome Velvet v. 0.7.63; Newbler v. 2.3 2015-05-12T16:03:33.433 USA: Buffalo, NY, State Univer Tooth abscess 454; Sanger University of Florida 94.4x 98.41 99.61 0 99.87 0.56 GCF_001444325.1 1919 2005 2005 20 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_001444445.1 HMT-600 F0113 Named Cultivated Oral (Abundance: Scarce) HMT-600 Hoylesella enoeca F0113 1 2861432 46.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/444/445/GCA_001444445.1_ASM144444v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella enoeca PRJNA282954 76123 SAMN04260158 ASM144444v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2015-11-11T16:04:16.000 USA: Blacksberg, VA subgingival plaque, periodontal pocket PacBio The Forsyth Institute 366.0x 99.96 98.65 0 99.81 0.37 GCF_001444445.1 2505 2581 2581 11 9 54 2 Hoylesella_enoeca_homd_HMT_600 GCA_001454905.1 HMT-825 WSLC 1033 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-825 Listeria monocytogenes WSLC 1033 1 2950820 37.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/454/905/GCA_001454905.1_ASM145490v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes_B PRJNA302838 882095 SAMN04286631 ASM145490v1 Complete Genome SMRT Analysis v. 2.3 2015-11-23T02:43:07.783 USA USA PacBio ETH Zurich 278.0x 99.48 99.45 0 99.99 0.68 GCF_001454905.1 2844 3023 3023 93 18 67 1 Listeria_monocytogenes_homd_HMT_825 GCA_001455085.1 HMT-953 ChDC F206 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii ChDC F206 2 2430523 27.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/455/085/GCA_001455085.1_ASM145508v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA270138 1307443 SAMN03263145 ASM145508v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T23:34:18.797 South Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 97.72 100 0 100 0.32 GCF_001455085.1 2343 2421 2421 21 16 40 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_001455105.1 HMT-953 ChDC F300 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii ChDC F300 2 2527063 27.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/455/105/GCA_001455105.1_ASM145510v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA270142 1307444 SAMN03263150 ASM145510v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-12T00:03:33.720 South Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 97.6 100 2.25 100 1.4 GCF_001455105.1 2450 2529 2529 19 12 47 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_001455125.1 HMT-202 ChDC F319 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum ChDC F319 3 2481490 27.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/455/125/GCA_001455125.1_ASM145512v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA270139 76857 SAMN03263146 ASM145512v1 Chromosome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T23:36:18.370 South Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 96.98 100 0 100 0.05 GCF_001455125.1 2343 2427 2427 27 15 41 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_001455145.1 HMT-953 ChDC F174 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii ChDC F174 3 2531722 27.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/455/145/GCA_001455145.1_ASM145514v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA270134 1307442 SAMN03263088 ASM145514v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T22:22:19.233 South Korea: Gwangju Illumina HiSeq Chosun University 1331.0x 97.94 100 1.12 100 0.31 GCF_001455145.1 2333 2416 2416 18 15 49 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_001456385.1 HMT-804 ATCC 19435 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-804 Lactococcus lactis ATCC 19435 171 2547291 35.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/456/385/GCA_001456385.1_ASM145638v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis PRJNA294255 1360 SAMN04018792 ASM145638v1 Contig IDBA-UD v. 1.1.1 2015-08-31T05:13:11.000 Netherlands Dairy starter Illumina HiSeq Radboudumc 50.0x 99.98 99.62 0.57 100 0.55 GCF_001456385.1 LKLC01 2503 2610 2610 43 10 53 1 Lactococcus_lactis_homd_HMT_804 GCA_001457455.1 HMT-591 NCTC11397 Named Cultivated Pathogen (Abundance: Scarce) HMT-591 Corynebacterium diphtheriae NCTC11397 1 2463666 53.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/457/455/GCA_001457455.1_NCTC11397 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae PRJEB6403 1717 SAMEA2517360 NCTC11397 Complete Genome 2014-07-01T08:05:53.563 USA not known SC 100.0x 99.99 99.45 0 99.99 1.1 GCF_001457455.1 2328 2409 2409 10 15 55 1 Corynebacterium_diphtheriae_homd_HMT_591 GCA_001457475.1 HMT-343 NCTC10807 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-343 Achromobacter xylosoxidans NCTC10807 1 6813182 67.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/457/475/GCA_001457475.1_NCTC10807 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter;s__Achromobacter xylosoxidans PRJEB6403 85698 SAMEA2517358 NCTC10807 Complete Genome 2014-07-01T08:05:53.416 Japan pus SC 100.0x 99.99 99.53 0.58 100 1.47 GCF_001457475.1 6133 6241 6241 33 10 64 1 Achromobacter_xylosoxidans_homd_HMT_343 GCA_001457555.1 HMT-202 NCTC10562 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum NCTC10562 2 2455060 26.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/457/555/GCA_001457555.1_NCTC10562 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJEB6403 76857 SAMEA2479572 NCTC10562 Complete Genome 2014-06-07T08:08:37.206 USA inflamed gingiva SC 100.0x 99.99 100 0 100 0.12 GCF_001457555.1 2330 2417 2417 24 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_001457615.1 HMT-536 NCTC10332 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-536 Pseudomonas aeruginosa NCTC10332 1 6316979 66.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/457/615/GCA_001457615.1_NCTC10332 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa PRJEB6403 287 SAMEA2479570 NCTC10332 Complete Genome 2014-07-01T08:05:47.763 Czech Republic: Prague not known SC 100.0x 99.99 99.68 0.11 100 0.11 GCF_001457615.1 5773 5988 5988 126 12 76 1 Pseudomonas_aeruginosa_homd_HMT_536 GCA_001457635.1 HMT-734 NCTC7465 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae NCTC7465 1 2110968 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/457/635/GCA_001457635.1_NCTC7465 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJEB6403 1313 SAMEA2479568 NCTC7465 Complete Genome 2014-07-01T08:05:47.173 USA not known SC 100.0x 99.96 99.18 0.63 100 0.48 GCF_001457635.1 2091 2238 2238 76 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_001457655.1 HMT-641 NCTC8143 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC8143 1 1890645 38.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/457/655/GCA_001457655.1_NCTC8143 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB6403 727 SAMEA2498480 NCTC8143 Complete Genome 2014-07-01T08:05:51.876 United Kingdom not known SC 100.0x 99.99 99.77 0 100 0.01 GCF_001457655.1 1792 1905 1905 34 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_001458475.1 HMT-646 KWG1 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KWG1 1 2140065 46.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/458/475/GCA_001458475.1_KKKWG1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB9502 504 SAMEA3477627 KKKWG1 Complete Genome 2015-11-10T11:05:05.966 France oropharynx INSERM, IAME, UMR 1137 91.0x 98.43 98.87 0.68 100 0.91 GCF_001458475.1 2209 2293 2293 16 12 55 1 Kingella_kingae_homd_HMT_646 GCA_001462375.1 HMT-701 XH001 Named Cultivated Oral (Abundance: High) HMT-701 Schaalia odontolytica XH001 5 2336123 65.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/462/375/GCA_001462375.1_ASM146237v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia odontolytica_C PRJNA298751 1660 SAMN04166493 ASM146237v1 Scaffold SPAdes v. 3.6.1 2015-10-14T14:12:13.000 USA: Los Angeles oral cavity Illumina MiSeq University of Washington 20.0x 87.44 100 0.47 100 0.12 GCF_001462375.1 LLVT01 1976 2041 2041 9 6 49 1 Schaalia_odontolytica_homd_HMT_701 GCA_001465675.1 HMT-550 RIVM1607 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus RIVM1607 2 2771015 32.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/465/675/GCA_001465675.1_ASM146567v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA305475 1280 SAMN04325938 ASM146567v1 Complete Genome CLC Genomics Workbench v. version 8.5.1 2015-12-09T06:14:03.000 Netherlands: Bilthoven unavailable 454; Illumina RIVM 97.72 99.51 0.08 100 0.15 GCF_001465675.1 2507 2695 2695 107 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_001466485.2 HMT-245 AU37 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-245 Roseomonas mucosa AU37 249 4741248 70.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/466/485/GCA_001466485.2_ASM146648v2 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas mucosa PRJNA298945 207340 SAMN04169051 ASM146648v2 Contig SPAdes v. 3.9.0 (shovill 0.2) 2015-10-16T00:50:03.000 Australia: Brisbane peripheral intravenous catheter tip on left arm for 7 days with standard polyure Illumina HiSeq Griffith University 50.0x 99.38 99.5 0 100 0.66 GCF_001466485.2 LLWF02 4244 4331 4331 20 3 63 1 Roseomonas_mucosa_homd_HMT_245 GCA_001469295.1 HMT-622 ATCC 10558 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii ATCC 10558 12 2164016 40.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/469/295/GCA_001469295.1_ASM146929v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA304678 1302 SAMN04306534 ASM146929v1 Scaffold SOAPdenovo v. 2.04 2015-12-02T05:23:06.000 USA blood Illumina HiSeq Slagelse Hospital 60.5x 99.97 100 0 100 0.13 GCF_001469295.1 LOBS01 2050 2130 2130 46 3 30 1 Streptococcus_gordonii_homd_HMT_622 GCA_001469555.1 HMT-530 PA_30_2_L1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes PA_30_2_L1 1 2530708 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/469/555/GCA_001469555.1_ASM146955v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA292487 1747 SAMN03982898 ASM146955v1 Chromosome Velvet v. 1.2.10 2015-08-12T05:21:10.000 Denmark: Aarhus Illumina; 454; Sanger sequencing None 50.0x 99.56 100 0 100 1.36 GCF_001469555.1 2327 2406 2406 23 7 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_001469565.1 HMT-530 PA_15_1_R1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes PA_15_1_R1 2 2547961 60.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/469/565/GCA_001469565.1_ASM146956v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA291008 1747 SAMN03982939 ASM146956v1 Complete Genome Velvet v. 1.2.10 2015-08-12T05:41:09.000 Denmark: Aarhus Illumina; 454; Sanger sequencing Aarhus University 50.0x 99.72 98.79 0.03 100 0.14 GCF_001469565.1 2376 2456 2456 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_001469595.1 HMT-530 PA_21_1_L1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes PA_21_1_L1 1 2560354 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/469/595/GCA_001469595.1_ASM146959v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA292488 1747 SAMN03982942 ASM146959v1 Complete Genome Velvet v. 1.2.10 2015-08-12T05:47:13.000 Denmark: Aarhus Illumina; 454; Sanger sequencing None 50.0x 99.16 100 0 100 0.14 GCF_001469595.1 2365 2446 2446 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_001469615.1 HMT-530 PA_15_2_L1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes PA_15_2_L1 1 2540008 60.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/469/615/GCA_001469615.1_ASM146961v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA292484 1747 SAMN03982940 ASM146961v1 Complete Genome Velvet v. 1.2.10 2015-08-12T05:44:10.000 Denmark: Aarhus Illumina; 454; Sanger sequencing None 50.0x 99.82 98.94 0.03 100 0.99 GCF_001469615.1 2357 2437 2437 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_001469635.1 HMT-530 PA_12_1_R1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes PA_12_1_R1 1 2470017 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/469/635/GCA_001469635.1_ASM146963v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA292486 1747 SAMN03982937 ASM146963v1 Chromosome Velvet v. 1.2.10 2015-08-12T05:35:14.000 Denmark: Aarhus Illumina; 454; Sanger sequencing None 50.0x 99.96 98.46 0.03 99.99 0.11 GCF_001469635.1 2288 2365 2365 23 8 44 2 Cutibacterium_acnes_homd_HMT_530 GCA_001469655.1 HMT-530 PA_12_1_L1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes PA_12_1_L1 1 2491961 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/469/655/GCA_001469655.1_ASM146965v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA292485 1747 SAMN03982899 ASM146965v1 Complete Genome Velvet v. 1.2.10 2015-08-12T05:29:09.000 Denmark: Aarhus Illumina; 454; Sanger sequencing None 50.0x 99.97 99.43 0.03 100 0.65 GCF_001469655.1 2306 2386 2386 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_001471515.2 HMT-120 FDAARGOS_130 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus FDAARGOS_130 2 2695523 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/471/515/GCA_001471515.2_ASM147151v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA231221 1283 SAMN03996273 ASM147151v2 Contig HGAP3 v. Oct 2014 2015-08-17T07:15:14.000 USA: DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 674.0x 99.33 99.62 0.56 100 1.98 GCF_001471515.2 LOSE02 2602 2785 2785 100 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_001471555.2 HMT-116 FDAARGOS_173 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis FDAARGOS_173 4 2602552 32.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/471/555/GCA_001471555.2_ASM147155v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA231221 29388 SAMN03996314 ASM147155v2 Contig HGAP3 v. Feb 2015 2015-08-17T07:15:17.000 USA: DC CVP blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 598.0x 98.9 99.81 0.36 99.99 0.86 GCF_001471555.2 LORZ02 2480 2610 2610 48 19 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_001471735.2 HMT-576 FDAARGOS_146 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus FDAARGOS_146 1 1930245 38.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/471/735/GCA_001471735.2_ASM147173v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA231221 1702171 SAMN03996291 ASM147173v2 Contig HGAP3 v. Oct 2014 2015-08-17T07:15:16.000 USA: DC vaginal swab PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 1058.0x 99.35 0.4 99.99 0.11 GCF_001471735.2 LOSA02 1821 1933 1933 39 12 60 1 Streptococcus_constellatus_homd_HMT_576 GCA_001471795.2 HMT-076 FDAARGOS_151 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri FDAARGOS_151 3 2589814 32.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/471/795/GCA_001471795.2_ASM147179v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA231221 1292 SAMN03996298 ASM147179v2 Contig HGAP3 v. Oct 2014 2015-08-17T07:15:16.000 USA: DC CSF PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 684.0x 99.66 99.73 0 100 0.11 GCF_001471795.2 LORQ02 2489 2571 0 0 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_001483405.1 HMT-825 Lm 3163 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-825 Listeria monocytogenes Lm 3163 1 2927751 38.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/483/405/GCA_001483405.1_ASM148340v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes PRJNA306210 1639 SAMN04348333 ASM148340v1 Complete Genome SMRT Analysis v. 2.2.0 2015-12-17T04:23:03.231 Switzerland blood PacBio University of Zurich, Vetsuisse Faculty 98.94 99.45 0 100 0.7 GCF_001483405.1 2840 3053 3053 127 18 67 1 Listeria_monocytogenes_homd_HMT_825 GCA_001483775.1 HMT-084 CD07_3 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-084 Kocuria palustris CD07_3 18 2833425 70.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/483/775/GCA_001483775.1_ASM148377v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria palustris PRJNA307136 71999 SAMN04376006 ASM148377v1 Contig CLC NGS Cell v. 7.5.1 2015-12-29T01:29:02.000 India: Chandigarh, PGIMER Duodenal mucosa of Celiac disease patient Illumina HiSeq Institute of Microbial Technology 100.0x 98.04 99.34 0.33 99.99 0.44 GCF_001483775.1 LQBJ01 2454 2530 2530 22 3 50 1 Kocuria_palustris_homd_HMT_084 GCA_001500315.1 HMT-331 DSM 20609 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis DSM 20609 54 2201708 37.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/500/315/GCA_001500315.1_ASM150031v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJNA298382 29379 SAMN04158717 ASM150031v1 Contig Velvet v. 1.2.07 2015-10-10T04:52:16.000 USA: North Carolina ear Illumina HiSeq Harbin Medical University 12.0x 99.99 99.45 0.55 99.99 0.08 GCF_001500315.1 LLER01 2094 2173 2173 42 5 31 1 Staphylococcus_auricularis_homd_HMT_331 GCA_001509915.1 HMT-828 I979 Named Cultivated Pathogen (Abundance: Scarce) HMT-828 Bordetella pertussis I979 1 4082551 67.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/509/915/GCA_001509915.1_ASM150991v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella;s__Bordetella pertussis PRJNA266616 520 SAMN03249376 ASM150991v1 Complete Genome HGAP v. 3 2014-12-03T07:23:00.733 USA:NY missing Illumina MiSeq; PacBio Centers for Disease Control and Prevention 106.0x 99.87 100 0.47 99.95 0.44 GCF_001509915.1 3867 3955 3955 15 9 63 1 Bordetella_pertussis_homd_HMT_828 GCA_001510735.1 HMT-698 ChDC F311 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto ChDC F311 3 2470675 27.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/510/735/GCA_001510735.1_ASM151073v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA270147 76856 SAMN03263580 ASM151073v1 Scaffold AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-12T00:32:48.436 South Korea: Gwangju subgingival dental plaque Illumina HiSeq Chosun University 1331.0x 98.91 100 1.12 100 0.73 GCF_001510735.1 LMVH01 2406 2473 2473 18 12 36 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_001514435.1 HMT-152 S9 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-152 Streptococcus thermophilus S9 1 1787436 39.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/514/435/GCA_001514435.1_ASM151443v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus PRJNA307645 1308 SAMN04384202 ASM151443v1 Complete Genome HGAP v. 2.0 2016-01-05T07:35:02.580 China traditional dairy PacBio China Agricultural University 393.5x 98.61 99.89 0.15 99.93 0.26 GCF_001514435.1 1876 2012 2012 50 18 67 1 Streptococcus_thermophilus_homd_HMT_152 GCA_001514475.1 HMT-804 NBRC 100933 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-804 Lactococcus lactis NBRC 100933 40 2547623 35.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/514/475/GCA_001514475.1_ASM151447v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis PRJDB1317 1236944 SAMD00034154 ASM151447v1 Contig newbler v. 3.0 2015-09-16T17:00:07.000 NA 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 98.0x 99.99 99.62 0.57 100 0.56 GCF_001514475.1 BCNL01 2549 2642 2642 43 4 45 1 Lactococcus_lactis_homd_HMT_804 GCA_001516345.1 HMT-536 H47921 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-536 Pseudomonas aeruginosa H47921 1 6836415 66.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/516/345/GCA_001516345.1_ASM151634v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa PRJNA253624 287 SAMN02894353 ASM151634v1 Complete Genome HGAP v. 3 2014-06-27T14:34:57.983 USA: New York, NY missing PacBio MSKCC 87.3x 99.31 99.68 0.11 100 0.1 GCF_001516345.1 6269 6458 6458 104 12 72 1 Pseudomonas_aeruginosa_homd_HMT_536 GCA_001517935.1 HMT-837 CCUG41628 Named Cultivated Vaginal (Abundance: Medium) HMT-837 Sneathia sanguinegens CCUG41628 32 1291023 26.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/517/935/GCA_001517935.1_ASM151793v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia;s__Sneathia sanguinegens PRJNA305231 40543 SAMN04320708 ASM151793v1 Contig Velvet v. 1.1.04 2015-12-07T07:07:17.000 unknown Illumina MiSeq Robert Koch Institute 100.0x 99.96 100 0.16 97.55 0.54 GCF_001517935.1 LOQF01 1212 1258 1258 8 2 35 1 Sneathia_sanguinegens_homd_HMT_837 GCA_001528845.1 HMT-571 NBRC 14074 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-571 Burkholderia cepacia NBRC 14074 110 8486058 66.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/528/845/GCA_001528845.1_ASM152884v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia cepacia PRJDB3000 292 SAMD00018762 ASM152884v1 Contig newbler v. 2.6 2015-07-16T11:38:28.646 NA 454 GS-FLX Titanium; Illumina MiSeq National Institute of Technology and Evaluation 83.0x 99.99 100 0 100 0.03 GCF_001528845.1 BCNU01 7694 7832 7832 59 5 73 1 Burkholderia_cepacia_homd_HMT_571 GCA_001543085.1 HMT-755 JF Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius JF 1 2191044 40.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/543/085/GCA_001543085.1_ASM154308v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA308383 1304 SAMN04395122 ASM154308v1 Complete Genome SMRT analysis v. 2.3.0 2016-01-11T01:49:02.560 China: Xintai oral PacBio Xintai People Hospital 200.0x 99.99 98.8 0.64 99.97 0.05 GCF_001543085.1 1987 2132 2132 31 23 91 0 Streptococcus_salivarius_homd_HMT_755 GCA_001543285.1 HMT-312 CCUG4311 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-312 Aerococcus viridans CCUG4311 1 2199877 39.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/543/285/GCA_001543285.1_ASM154328v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;s__Aerococcus viridans PRJNA308559 1377 SAMN04419116 ASM154328v1 Complete Genome Hiseq: SOAPdenovo and PacBio: Celera Assembler v. SOAPdenovo v.2.04 and Celera Assembler 8.1 2016-01-16T13:34:04.000 United Kingdom: London Air sample PacBio; Illumina HiSeq Slagelse Hospital 486.0x 99.99 98.9 1.65 99.96 0.8 GCF_001543285.1 2006 2121 2121 37 21 55 2 Aerococcus_viridans_homd_HMT_312 GCA_001544095.1 HMT-801 NBRC 100478 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-801 Enterococcus casseliflavus NBRC 100478 54 3498264 42.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/544/095/GCA_001544095.1_ASM154409v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D;s__Enterococcus_D casseliflavus PRJDB260 1218087 SAMD00045727 ASM154409v1 Contig newbler v. 3.0 2016-01-21T01:00:26.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 109.0x 99.99 99.25 0.38 100 1.12 GCF_001544095.1 BCPT01 3339 3454 3454 61 3 50 1 Enterococcus_casseliflavus_homd_HMT_801 GCA_001544155.1 HMT-854 NBRC 102503 Named Cultivated Oral (Abundance: Scarce) HMT-854 Ralstonia pickettii NBRC 102503 52 4733058 63.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/544/155/GCA_001544155.1_ASM154415v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;s__Ralstonia pickettii PRJDB287 1218114 SAMD00045738 ASM154415v1 Contig newbler v. 3.0 2016-01-21T01:00:34.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 130.0x 99.99 99.94 0.01 99.99 0 GCF_001544155.1 BCPW01 4345 4432 4432 30 3 53 1 Ralstonia_pickettii_homd_HMT_854 GCA_001544215.1 HMT-880 NBRC 100479 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-880 Enterococcus durans NBRC 100479 122 3017302 37.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/544/215/GCA_001544215.1_ASM154421v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B durans PRJDB261 1218088 SAMD00045728 ASM154421v1 Contig newbler v. 3.0 2016-01-21T01:00:27.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 146.0x 99.99 99.63 1.12 100 0.97 GCF_001544215.1 BCQB01 2873 2991 2991 68 3 46 1 Enterococcus_durans_homd_HMT_880 GCA_001544235.1 HMT-604 NBRC 100480 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-604 Enterococcus faecalis NBRC 100480 37 2833208 37.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/544/235/GCA_001544235.1_ASM154423v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis PRJDB262 1169286 SAMD00045729 ASM154423v1 Contig newbler v. 3.0 2016-01-21T01:00:28.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 160.0x 99.99 99.63 0 99.99 0.45 GCF_001544235.1 BCQC01 2734 2860 2860 75 3 47 1 Enterococcus_faecalis_homd_HMT_604 GCA_001546165.1 HMT-788 MJR8151 Named Cultivated Vaginal (Abundance: Scarce) HMT-788 Anaerococcus tetradius MJR8151 70 2015538 34.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/546/165/GCA_001546165.1_ASM154616v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus tetradius PRJNA272092 33036 SAMN03842091 ASM154616v1 Scaffold Velvet v. 1.1.06 2015-07-07T13:05:05.973 Vagina Illumina The Genome Institute at Washington University 103.0x 98.31 99.39 0 98.34 0.25 GCF_001546165.1 LRPM01 1833 1900 1900 31 2 33 1 Anaerococcus_tetradius_homd_HMT_788 GCA_001546395.1 HMT-860 CMW8396 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-860 Fusobacterium gonidiaformans CMW8396 77 1797919 32.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/546/395/GCA_001546395.1_ASM154639v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C gonidiaformans PRJNA272098 134605 SAMN03850946 ASM154639v1 Scaffold Velvet v. 1.1.06 2015-07-08T16:05:06.557 Vagina Illumina The Genome Institute at Washington University 132.0x 100 0 99.98 0.14 GCF_001546395.1 LRPX01 1748 1799 1799 16 2 32 1 Fusobacterium_gonidiaformans_homd_HMT_860 GCA_001546435.1 HMT-420 MJR7757B Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis MJR7757B 199 2392347 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/546/435/GCA_001546435.1_ASM154643v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA272113 851 SAMN03851012 ASM154643v1 Scaffold Velvet v. 1.1.06 2015-07-08T17:05:51.807 Vagina Illumina The Genome Institute at Washington University 82.0x 91.85 100 1.7 100 0.19 GCF_001546435.1 LRPY01 2314 2346 2346 18 4 9 1 Fusobacterium_animalis_homd_HMT_420 GCA_001546565.2 HMT-556 GED7760C Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-556 Prevotella bivia GED7760C 127 2459295 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/546/565/GCA_001546565.2_ASM154656v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella bivia PRJNA272110 28125 SAMN03854476 ASM154656v2 Scaffold Velvet v. 1.1.06 2015-07-10T15:05:05.620 Vagina Illumina The Genome Institute at Washington University 83.0x 99.1 99.32 0 99.99 0.11 GCF_001546565.2 LRQF02 2083 2140 2140 10 2 44 1 Prevotella_bivia_homd_HMT_556 GCA_001546845.1 HMT-524 CMW7756B Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica CMW7756B 94 2098853 38.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/546/845/GCA_001546845.1_ASM154684v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA272125 39777 SAMN03956213 ASM154684v1 Scaffold Velvet v. 1.1.06 2015-08-04T13:05:05.490 Vagina Illumina The Genome Institute at Washington University 99.0x 97.37 100 0 100 0.12 GCF_001546845.1 LRQT01 1894 1962 1962 20 6 41 1 Veillonella_atypica_homd_HMT_524 GCA_001546875.1 HMT-552 MJR7694 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum MJR7694 16 2467154 63.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/546/875/GCA_001546875.1_ASM154687v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA272115 33010 SAMN03948577 ASM154687v1 Scaffold Velvet v. 1.1.06 2015-07-31T18:05:06.360 Vagina Illumina The Genome Institute at Washington University 76.0x 98.7 100 0 99.99 0.09 GCF_001546875.1 LRVD01 2244 2316 2316 21 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_001547775.1 HMT-531 NUM 4039 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans NUM 4039 1 2382853 44.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/547/775/GCA_001547775.1_ASM154777v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJDB1482 1407647 SAMD00061020 ASM154777v1 Complete Genome Celera Assembler v. 6.1 2016-09-28T01:01:45.171 454 GS FLX; ABI 3730 Nihon University School of Dentistry at Matsudo 18.0x 97.78 99.45 0.23 100 0.65 GCF_001547775.1 2348 2512 2512 90 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_001547835.1 HMT-745 MTB314 Named Cultivated Pathogen (Abundance: Scarce) HMT-745 Streptococcus pyogenes MTB314 1 1744827 38.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/547/835/GCA_001547835.1_ASM154783v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes PRJDB1668 1314 SAMD00000332 ASM154783v1 Complete Genome 2015-09-16T16:21:04.000 Japan: Hikone-shi 454 GS Jr; ABI 3730 Kitasato Institute of Life Sciences 40.0x 99.92 100 0 99.99 0.39 GCF_001547835.1 1656 1793 1793 51 18 67 1 Streptococcus_pyogenes_homd_HMT_745 GCA_001547855.1 HMT-613 KS16 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia KS16 1 3393002 47.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/547/855/GCA_001547855.1_ASM154785v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJDB1008 1307833 SAMD00061005 ASM154785v1 Complete Genome Newbler v. 2.8 2016-09-28T01:01:34.764 Sanger; Roche 454_; Illumina GAII Tokyo Medical and Dental University, Graduate School of Medical and Dental Sciences, Section of Bacterial Phathogenesis 23.0x 98.66 98.91 0 99.67 0.03 GCF_001547855.1 2922 2999 2999 24 6 46 1 Tannerella_forsythia_homd_HMT_613 GCA_001547875.1 HMT-613 3313 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia 3313 1 3350939 47.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/547/875/GCA_001547875.1_ASM154787v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJDB1007 1307832 SAMD00061004 ASM154787v1 Complete Genome Newbler v. 2.8 2016-09-28T01:01:34.140 Sanger; Roche 454_; Illumina GAII Tokyo Medical and Dental University, Graduate School of Medical and Dental Sciences, Section of Bacterial Phathogenesis 21.0x 98.62 97.95 0 98.78 0.15 GCF_001547875.1 2877 2951 2951 21 6 46 1 Tannerella_forsythia_homd_HMT_613 GCA_001548195.1 HMT-643 17-2 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia 17-2 2 2737273 43.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/548/195/GCA_001548195.1_ASM154819v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJDB4034 28131 SAMD00034934 ASM154819v1 Complete Genome HGAP algorithm in the SMRT Analysis v. 2.3 2015-09-16T17:01:04.000 Japan:Osaka PacBio RS II osaka dental university 200.0x 96.54 99.32 0.76 99.87 0.25 GCF_001548195.1 2347 2421 2421 10 12 51 1 Prevotella_intermedia_homd_HMT_643 GCA_001548235.1 HMT-681 NUM-Rm6536 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 NUM-Rm6536 1 2292716 59.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/548/235/GCA_001548235.1_ASM154823v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_B PRJDB4139 43675 SAMD00036190 ASM154823v1 Complete Genome HGAP algorithm in the SMRT Analysis v. 2.3 2015-09-16T17:01:21.000 Japan:Osaka PacBio RS II osaka dental university 200.0x 93.47 99.33 2 100 0.33 GCF_001548235.1 1739 1813 1813 13 10 50 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001548235.1 HMT-681 NUM-Rm6536 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 NUM-Rm6536 1 2292716 59.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/548/235/GCA_001548235.1_ASM154823v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_B PRJDB4139 43675 SAMD00036190 ASM154823v1 Complete Genome HGAP algorithm in the SMRT Analysis v. 2.3 2015-09-16T17:01:21.000 Japan:Osaka PacBio RS II osaka dental university 200.0x 93.47 99.33 2 100 0.33 GCF_001548235.1 1739 1813 1813 13 10 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_001552395.1 HMT-053 NBRC 15361 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-053 Corynebacterium minutissimum NBRC 15361 42 2663455 59.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/552/395/GCA_001552395.1_ASM155239v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium minutissimum PRJDB438 1223512 SAMD00046517 ASM155239v1 Contig newbler v. 3.0 2016-01-29T01:00:55.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 118.0x 99.99 99.78 0 99.99 0.05 GCF_001552395.1 BCRC01 2460 2529 2529 8 8 51 2 Corynebacterium_minutissimum_homd_HMT_053 GCA_001552955.1 HMT-049 DNF00591 Named Cultivated Skin (Abundance: High) HMT-049 Corynebacterium kroppenstedtii DNF00591 9 2535741 56.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/552/955/GCA_001552955.1_ASM155295v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium parakroppenstedtii PRJNA246505 161879 SAMN03842619 ASM155295v1 Scaffold Velvet v. 1.1.06 2015-07-07T17:05:18.353 vagina Illumina The Genome Institute at Washington University 87.0x 92.68 97.41 0 99.99 0.02 GCF_001552955.1 LSCY01 2171 2241 2241 15 6 48 1 Corynebacterium_kroppenstedtii_homd_HMT_049 GCA_001552975.1 HMT-082 DNF00896 Named Cultivated Oral (Abundance: Medium) HMT-082 Lachnoanaerobaculum orale DNF00896 82 2919224 37.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/552/975/GCA_001552975.1_ASM155297v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum orale PRJNA246510 467210 SAMN04108634 ASM155297v1 Scaffold Velvet v. 1.1.06 2015-09-23T16:10:49.080 vagina Illumina The Genome Institute at Washington University 90.0x 87.16 99.04 0 96.97 0.09 GCF_001552975.1 LSDA01 2706 2768 2768 15 2 44 1 Lachnoanaerobaculum_orale_homd_HMT_082 GCA_001553035.1 HMT-626 DNF01167 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 DNF01167 83 1892523 30.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/035/GCA_001553035.1_ASM155303v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_B PRJNA272078 1379 SAMN03851017 ASM155303v1 Scaffold Velvet v. 1.1.06 2015-07-08T17:05:52.163 vagina Illumina The Genome Institute at Washington University 132.0x 93.9 97.99 0 99.99 0.27 GCF_001553035.1 LSDC01 1701 1769 0 35 3 29 1 Gemella_haemolysans_HMT_434_626 GCA_001553035.1 HMT-626 DNF01167 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 DNF01167 83 1892523 30.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/035/GCA_001553035.1_ASM155303v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_B PRJNA272078 1379 SAMN03851017 ASM155303v1 Scaffold Velvet v. 1.1.06 2015-07-08T17:05:52.163 vagina Illumina The Genome Institute at Washington University 132.0x 93.9 97.99 0 99.99 0.27 GCF_001553035.1 LSDC01 1701 1769 0 35 3 29 1 Gemella_haemolysans_clade_626_homd_HMT_626 GCA_001553045.1 HMT-222 KA00185 Named Cultivated Oral (Abundance: Medium) HMT-222 Leptotrichia wadei KA00185 126 2377589 29.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/045/GCA_001553045.1_ASM155304v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei PRJNA272072 157687 SAMN03854666 ASM155304v1 Scaffold Velvet v. 1.1.06 2015-07-10T19:05:05.517 vagina Illumina The Genome Institute at Washington University 108.0x 97.11 100 1.7 100 0.33 GCF_001553045.1 LSDD01 2205 2253 2253 16 3 28 1 Leptotrichia_wadei_homd_HMT_222 GCA_001553055.1 HMT-809 DNF00959 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-809 Olsenella phocaeensis DNF00959 13 2134018 66.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/055/GCA_001553055.1_ASM155305v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_I;s__Olsenella_I phocaeensis PRJNA246512 1476999 SAMN03855786 ASM155305v1 Scaffold Velvet v. 1.1.06 2015-07-11T08:05:18.470 vagina Illumina The Genome Institute at Washington University 83.0x 100 0 96.47 1.19 GCF_001553055.1 LSDE01 1841 1905 1905 11 3 50 0 Olsenella_phocaeensis_homd_HMT_809 GCA_001553145.1 HMT-542 KA00810 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius KA00810 88 2002682 35.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/145/GCA_001553145.1_ASM155314v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA272075 1261 SAMN03854409 ASM155314v1 Scaffold Velvet v. 1.1.06 2015-07-10T14:05:16.537 vagina Illumina The Genome Institute at Washington University 95.0x 99.16 100 0 99.7 0 GCF_001553145.1 LSDI01 1758 1828 1828 32 2 35 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_001553165.1 HMT-279 KA00676 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri KA00676 62 2355383 55.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/165/GCA_001553165.1_ASM155316v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA272076 1588749 SAMN03854411 ASM155316v1 Scaffold Velvet v. 1.1.06 2015-07-10T14:05:16.657 vagina Illumina The Genome Institute at Washington University 122.0x 98.87 0 99.94 0.03 GCF_001553165.1 LSDJ01 1831 1889 1889 8 3 46 1 Porphyromonas_pasteri_homd_HMT_279 GCA_001553215.1 HMT-279 KA00683 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri KA00683 62 2355383 55.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/215/GCA_001553215.1_ASM155321v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA272077 322095 SAMN03854412 ASM155321v1 Scaffold Velvet v. 1.1.06 2015-07-10T14:05:16.713 vagina Illumina The Genome Institute at Washington University 122.0x 94.19 98.87 0 99.94 0.03 GCF_001553215.1 LSDK01 1831 1889 1889 8 3 46 1 Porphyromonas_pasteri_homd_HMT_279 GCA_001553225.1 HMT-797 DNF00307 Named Cultivated Vaginal (Abundance: Medium) HMT-797 Prevotella amnii DNF00307 112 2378563 36.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/225/GCA_001553225.1_ASM155322v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella amnii PRJNA246504 419005 SAMN04324898 ASM155322v1 Scaffold Velvet v. 1.1.06 2015-12-08T08:06:06.390 vagina Illumina The Genome Institute at Washington University 77.0x 98.35 99.66 0.34 99.97 0.08 GCF_001553225.1 LSDL01 2021 2084 2084 14 2 46 1 Prevotella_amnii_homd_HMT_797 GCA_001553315.1 HMT-156 DNF00926 Named Cultivated Oral (Abundance: High) HMT-156 Veillonella nakazawae DNF00926 58 2045490 38.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/315/GCA_001553315.1_ASM155331v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella nakazawae PRJNA246511 39778 SAMN04324900 ASM155331v1 Scaffold Velvet v. 1.1.06 2015-12-08T08:06:06.480 vagina Illumina The Genome Institute at Washington University 107.0x 92.96 100 0 99.99 0.15 GCF_001553315.1 LSDO01 1870 1926 1926 19 2 34 1 Veillonella_nakazawae_homd_HMT_156 GCA_001553335.1 HMT-161 DNF00876 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula DNF00876 41 2050442 38.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/335/GCA_001553335.1_ASM155333v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA246509 29466 SAMN04324899 ASM155333v1 Scaffold Velvet v. 1.1.06 2015-12-08T08:06:06.430 vagina Illumina The Genome Institute at Washington University 134.0x 96.11 99.6 0 99.99 0.11 GCF_001553335.1 LSDP01 1832 1892 1892 22 2 35 1 Veillonella_parvula_homd_HMT_161 GCA_001553345.1 HMT-780 DNF00869 Unnamed Cultivated Oral (Abundance: High) HMT-780 Veillonella sp. HMT-780 DNF00869 27 1664293 39.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/345/GCA_001553345.1_ASM155334v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp001553345 PRJNA257378 1384081 SAMN04324904 ASM155334v1 Scaffold Velvet v. 1.1.06 2015-12-08T08:06:06.657 vagina Illumina The Genome Institute at Washington University 164.0x 99.28 0 99.95 0.04 GCF_001553345.1 LSDQ01 1460 1519 1519 21 2 35 1 Veillonella_sp_HMT_780_homd_HMT_780 GCA_001553395.1 HMT-841 DNF00751 Named Cultivated Vaginal (Abundance: Medium) HMT-841 Megasphaera lornae DNF00751 45 1729361 46.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/395/GCA_001553395.1_ASM155339v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera_C;s__Megasphaera_C lornae PRJNA257377 1384082 SAMN04108635 ASM155339v1 Scaffold Velvet v. 1.1.06 2015-09-23T16:10:49.257 vagina Illumina The Genome Institute at Washington University 120.0x 100 0 96.8 0.01 GCF_001553395.1 LSDS01 1548 1622 1622 25 3 45 1 Megasphaera_lornae_homd_HMT_841 GCA_001553545.1 HMT-627 CCUG 32990 Named Cultivated Oral (Abundance: Scarce) HMT-627 Capnocytophaga haemolytica CCUG 32990 1 2688484 44.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/545/GCA_001553545.1_ASM155354v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga haemolytica PRJNA282954 45243 SAMN04435862 ASM155354v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:05.000 Japan: Okayama supragingival dental plaque PacBio The Forsyth Institute 87.0x 99.99 100 1.43 99.91 1.43 GCF_001553545.1 2424 2485 2485 3 8 49 1 Capnocytophaga_haemolytica_homd_HMT_627 GCA_001553565.1 HMT-746 CCUG 36733 Named Cultivated Oral (Abundance: Scarce) HMT-746 Actinomyces radicidentis CCUG 36733 1 3051613 72.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/565/GCA_001553565.1_ASM155356v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces radicidentis PRJNA282954 111015 SAMN04435863 ASM155356v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:05.000 Sweden Infected tooth root canal PacBio The Forsyth Institute 207.0x 100 1.9 100 0.01 GCF_001553565.1 2544 2630 2630 21 9 55 1 Actinomyces_radicidentis_homd_HMT_746 GCA_001553605.1 HMT-605 CCUG 45958 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-605 Desulfovibrio fairfieldensis CCUG 45958 1 3699310 60.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/605/GCA_001553605.1_ASM155360v1 d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__Desulfovibrio fairfieldensis_A PRJNA282954 44742 SAMN04435860 ASM155360v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:04.000 Australia liver abcess PacBio The Forsyth Institute 139.0x 99.41 0 99.99 0.16 GCF_001553605.1 3126 3221 3221 29 9 56 1 Desulfovibrio_fairfieldensis_homd_HMT_605 GCA_001553625.1 HMT-703 DSM 12838 Named Cultivated Oral (Abundance: Scarce) HMT-703 Desulfomicrobium orale DSM 12838 1 2783374 58.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/625/GCA_001553625.1_ASM155362v1 d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfomicrobiaceae;g__Desulfomicrobium;s__Desulfomicrobium orale PRJNA282954 888061 SAMN04435861 ASM155362v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:04.000 Netherlands subgingival dental plaque PacBio The Forsyth Institute 313.0x 98.51 1.19 99.92 1.16 GCF_001553625.1 2553 2631 2631 13 6 58 1 GCA_001553645.1 HMT-847 F0260 Unnamed Cultivated Oral (Abundance: Scarce) HMT-847 Leptotrichia sp. HMT-847 F0260 1 2194935 29.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/645/GCA_001553645.1_ASM155364v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia sp001553645 PRJNA282954 1785996 SAMN04435855 ASM155364v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:03.000 USA: Blacksberg, VA Subgingival plaque, periodontal pocket PacBio The Forsyth Institute 138.0x 100 0 100 0.06 GCF_001553645.1 2074 2145 2145 12 15 43 1 GCA_001553685.1 HMT-431 F0610 (5-114) Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 F0610 (5-114) 1 2177905 39.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/685/GCA_001553685.1_ASM155368v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001553685 PRJNA282954 712633 SAMN04435859 ASM155368v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:04.000 USA: Bethesda, MD enamel chip carried in mandibular vestibule PacBio The Forsyth Institute 249.0x 99.96 0 100 0.05 GCF_001553685.1 2003 2126 2126 48 12 62 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_001553685.1 HMT-431 F0610 (5-114) Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 F0610 (5-114) 1 2177905 39.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/685/GCA_001553685.1_ASM155368v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001553685 PRJNA282954 712633 SAMN04435859 ASM155368v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:04.000 USA: Bethesda, MD enamel chip carried in mandibular vestibule PacBio The Forsyth Institute 249.0x 99.96 0 100 0.05 GCF_001553685.1 2003 2126 2126 48 12 62 1 Streptococcus_infantis_clade_431_homd_HMT_431 GCA_001553795.1 HMT-619 MP4-504 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis MP4-504 92 2373453 48.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/795/GCA_001553795.1_ASM155379v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA305025 837 SAMN04309157 ASM155379v1 Contig SPAdes v. 3.6.1 2015-12-02T19:22:02.420 USA: Seattle human oral cavity Illumina MiSeq University of Washington 20.0x 98.46 99.92 0 100 0.04 GCF_001553795.1 LOEL01 2040 2103 2103 12 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_001553855.1 HMT-622 CCUG 33482 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii CCUG 33482 41 2166763 40.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/855/GCA_001553855.1_ASM155385v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA302716 1302 SAMN04395146 ASM155385v1 Scaffold CLC NGS Cell v. 8.0 2016-01-11T03:21:02.000 Unknown subacute endocarditis Illumina MiSeq TAILORED-Treatment project 71.0x 99.98 100 0 100 0.15 GCF_001553855.1 LQWV01 2059 2158 2158 48 4 46 1 Streptococcus_gordonii_homd_HMT_622 GCA_001553915.1 HMT-928 W2231 Named** Cultivated Oral (Abundance: Scarce) HMT-928 Gemella massiliensis W2231 1 1769679 30.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/915/GCA_001553915.1_ASM155391v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella massiliensis PRJNA282954 1785995 SAMN04435857 ASM155391v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2016-01-22T19:16:04.000 United Kingdom: Cardiff Dentoalveolar abscess PacBio The Forsyth Institute 296.0x 98.28 0 99.99 0.12 GCF_001553915.1 1620 1697 1697 23 12 41 1 Gemella_massiliensis_homd_HMT_928 GCA_001553935.1 HMT-043 T14V Named Cultivated Oral (Abundance: Medium) HMT-043 Actinomyces oris clade-043 T14V 1 3042917 68.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/935/GCA_001553935.1_ASM155393v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_A PRJNA282954 544580 SAMN04435864 ASM155393v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:05.000 USA: Boston, MA supragingival dental plaque PacBio The Forsyth Institute 357.0x 94.41 99.76 0.47 100 0.3 GCF_001553935.1 2461 2537 2537 14 9 52 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001553935.1 HMT-043 T14V Named Cultivated Oral (Abundance: Medium) HMT-043 Actinomyces oris clade-043 T14V 1 3042917 68.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/935/GCA_001553935.1_ASM155393v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_A PRJNA282954 544580 SAMN04435864 ASM155393v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:05.000 USA: Boston, MA supragingival dental plaque PacBio The Forsyth Institute 357.0x 94.41 99.76 0.47 100 0.3 GCF_001553935.1 2461 2537 2537 14 9 52 1 Actinomyces_oris_clade_043_homd_HMT_043 GCA_001553955.1 HMT-711 CCUG 350 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-711 Moraxella osloensis CCUG 350 5 2649137 43.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/955/GCA_001553955.1_ASM155395v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella_A;s__Moraxella_A osloensis PRJNA282954 34062 SAMN04435858 ASM155395v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:04.000 USA cerebrospinal fluid PacBio The Forsyth Institute 238.0x 99.99 99.71 0 100 0.05 GCF_001553955.1 2324 2484 2484 100 12 47 1 Moraxella_osloensis_homd_HMT_711 GCA_001554015.1 HMT-136 F0591 Named NVP** Cultivated Oral (Abundance: Medium) HMT-136 Selenomonas felix F0591 2 2458072 56.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/554/015/GCA_001554015.1_ASM155401v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda felix PRJNA282954 713030 SAMN04435856 ASM155401v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-01-22T19:16:04.000 USA: Boston, MA Supragingival dental plaque, molar tooth PacBio The Forsyth Institute 316.0x 99.65 0.22 99.99 0.66 GCF_001554015.1 2330 2419 2419 20 12 56 1 Selenomonas_felix_homd_HMT_136 GCA_001556605.1 HMT-622 CCH8-G7 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii CCH8-G7 121 1978194 40.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/556/605/GCA_001556605.1_ASM155660v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA299404 1768771 SAMN04299455 ASM155660v1 Contig SPAdes v. 3.5 2015-11-29T14:45:29.000 USA: Ohio hospital shower hose biofilm Illumina HiSeq U.S. Environmental Protection Agency 5.0x 86.52 0 90.09 0.08 GCF_001556605.1 LSJE01 1873 1996 1996 75 6 41 1 Streptococcus_gordonii_homd_HMT_622 GCA_001558215.1 HMT-686 NG8 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NG8 1 1984441 36.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/558/215/GCA_001558215.1_ASM155821v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA298029 1309 SAMN04155244 ASM155821v1 Complete Genome HGAP.3 v. V1 2015-10-07T12:12:10.570 Papua New Guinea New Guinea Indigenes Pacific Biosciences University of Florida 100.0x 99.32 100 0 100 0.07 GCF_001558215.1 1833 1945 1945 31 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_001558775.1 HMT-128 FDAARGOS_141 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis FDAARGOS_141 1 2571829 33.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/558/775/GCA_001558775.1_ASM155877v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA231221 28035 SAMN03996285 ASM155877v1 Complete Genome HGAP3 v. Nov 2014 2015-08-17T07:15:15.000 USA:DC right elbow swab PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 593.3x 99.44 99.61 0.14 100 0.06 GCF_001558775.1 2379 2545 2545 85 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_001558815.2 HMT-128 FDAARGOS_143 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis FDAARGOS_143 1 2613879 33.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/558/815/GCA_001558815.2_ASM155881v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA231221 28035 SAMN03996287 ASM155881v2 Complete Genome Celera v. 8.2 2015-08-17T07:15:15.000 USA:DC abscess PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 500.7x 99.56 99.61 0 100 0.09 GCF_001558815.2 2394 2566 2566 91 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_001558875.2 HMT-801 FDAARGOS_163 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-801 Enterococcus casseliflavus FDAARGOS_163 2 3821476 42.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/558/875/GCA_001558875.2_ASM155887v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D;s__Enterococcus_D entomosocium PRJNA231221 1353 SAMN03996308 ASM155887v2 Complete Genome HGAP3 v. Oct 2014 2015-08-17T07:15:17.000 USA:DC elbow swab PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 336.6x 82.89 99.25 0.38 99.99 0.12 GCF_001558875.2 3493 3628 3628 58 15 61 1 Enterococcus_casseliflavus_homd_HMT_801 GCA_001560895.1 HMT-677 SVGS_061 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SVGS_061 1 2167922 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/560/895/GCA_001560895.1_ASM156089v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_Q PRJNA311086 28037 SAMN04461788 ASM156089v1 Complete Genome HGAP/HybridSpades/Seqman NGen v. unspecified 2016-02-05T17:52:02.000 USA: Houston, Texas, MD Anders blood PacBio/Illumina MD Anderson 151.0x 93.01 99.82 0.2 100 0.07 GCF_001560895.1 1937 2073 2073 64 12 59 1 Streptococcus_mitis_homd_HMT_677 GCA_001562215.1 HMT-037 YM1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-037 Stenotrophomonas nitritireducens YM1 1 4541594 63.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/562/215/GCA_001562215.1_ASM156221v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas nitritireducens_A PRJNA310387 1793721 SAMN04451766 ASM156221v1 Complete Genome HGAP v. 2.3 2016-02-02T03:06:03.000 South Korea soil PacBio Korea Polar Research Institute 100.0x 99.86 2.01 100 0.82 GCF_001562215.1 3867 3974 3974 21 14 71 1 Stenotrophomonas_nitritireducens_homd_HMT_037 GCA_001562845.1 HMT-814 CMW7778A Named Cultivated Vaginal (Abundance: High) HMT-814 Fannyhessea vaginae CMW7778A 24 1504164 42.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/562/845/GCA_001562845.1_ASM156284v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Fannyhessea;s__Fannyhessea vaginae PRJNA272124 82135 SAMN03842164 ASM156284v1 Scaffold Velvet v. 1.1.06 2015-07-07T14:05:04.673 vagina Illumina The Genome Institute at Washington University 93.0x 95.34 100 0 99.32 0.2 GCF_001562845.1 LSOA01 1241 1301 1301 10 3 46 1 Fannyhessea_vaginae_homd_HMT_814 GCA_001563595.1 HMT-542 MJR8628A Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius MJR8628A 65 2023341 35.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/563/595/GCA_001563595.1_ASM156359v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA272087 1261 SAMN03854410 ASM156359v1 Scaffold Velvet v. 1.1.06 2015-07-10T14:05:16.603 vagina Illumina The Genome Institute at Washington University 103.0x 99.14 100 0 100 0.02 GCF_001563595.1 LSQZ01 1809 1855 1855 36 2 7 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_001570785.1 HMT-354 NBRC 106157 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis NBRC 106157 28 2155270 63.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/570/785/GCA_001570785.1_ASM157078v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJDB1334 1349750 SAMD00046478 ASM157078v1 Contig newbler v. 3.0 2016-01-29T01:00:29.000 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 122.0x 94.15 0.19 99.97 0.11 GCF_001570785.1 BCSI01 1888 1948 1948 6 4 49 1 Dermabacter_hominis_homd_HMT_354 GCA_001570825.1 HMT-374 NBRC 104118 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-374 Cellulosimicrobium funkei NBRC 104118 116 4370484 74.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/570/825/GCA_001570825.1_ASM157082v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium;s__Cellulosimicrobium funkei PRJDB1345 1349761 SAMD00046475 ASM157082v1 Contig newbler v. 3.0 2016-01-29T01:00:27.000 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 101.0x 99.99 100 0.67 100 0.45 GCF_001570825.1 BCSK01 3899 3983 3983 25 3 55 1 Cellulosimicrobium_funkei_homd_HMT_374 GCA_001570845.1 HMT-368 NBRC 105045 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea NBRC 105045 134 3486774 70.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/570/845/GCA_001570845.1_ASM157084v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJDB1348 1349764 SAMD00046476 ASM157084v1 Contig newbler v. 3.0 2016-01-29T01:00:28.000 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 105.0x 99.41 0.2 99.99 0.06 GCF_001570845.1 BCSL01 3222 3303 3303 20 2 58 1 Dietzia_cinnamea_homd_HMT_368 GCA_001571065.1 HMT-368 NBRC 102147 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea NBRC 102147 160 3598827 70.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/571/065/GCA_001571065.1_ASM157106v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJDB449 1223524 SAMD00046472 ASM157106v1 Contig newbler v. 3.0 2016-01-29T01:00:25.000 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 100.0x 99.41 0.2 100 0.16 GCF_001571065.1 BCSW01 3317 3402 3402 23 5 56 1 Dietzia_cinnamea_homd_HMT_368 GCA_001574405.1 HMT-556 GED7880 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-556 Prevotella bivia GED7880 114 2579172 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/574/405/GCA_001574405.1_ASM157440v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella bivia PRJNA272094 28125 SAMN03854509 ASM157440v1 Scaffold Velvet v. 1.1.06 2015-07-10T16:05:05.900 Vagina Illumina The Genome Institute at Washington University 96.0x 98.94 99.66 0 99.98 0.07 GCF_001574405.1 LTAG01 2230 2288 2288 9 3 45 1 Prevotella_bivia_homd_HMT_556 GCA_001578725.1 HMT-767 DD04 Named Cultivated Oral (Abundance: Scarce) HMT-767 Streptococcus sinensis DD04 61 2199747 44.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/578/725/GCA_001578725.1_ASM157872v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sinensis PRJNA304333 1776578 SAMN04324323 ASM157872v1 Scaffold Newbler v. 2.6 2015-12-08T04:36:02.770 Germany: Goettingen, German Pr nose 454 University of Kaiserslautern 15.2x 98.94 0.12 99.96 0.21 GCF_001578725.1 LQOH01 2015 2088 2088 33 3 36 1 Streptococcus_sinensis_homd_HMT_767 GCA_001578775.1 HMT-578 DD08 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus DD08 44 2206539 43.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/578/775/GCA_001578775.1_ASM157877v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_A PRJNA304333 45634 SAMN04324327 ASM157877v1 Scaffold Newbler v. 2.6 2015-12-08T04:42:03.503 Cote dIvoire: Thai National Pa fruit residues (memencylon) 454 University of Kaiserslautern 16.8x 94.58 98.19 0 99.94 0.34 GCF_001578775.1 LQRD01 2118 2195 2195 33 3 40 1 Streptococcus_cristatus_homd_HMT_578 GCA_001579115.1 HMT-576 DD09 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus DD09 26 1856848 38.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/579/115/GCA_001579115.1_ASM157911v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA304333 76860 SAMN04324328 ASM157911v1 Scaffold Newbler v. 2.6 2015-12-08T04:43:02.970 Cote dIvoire: Tai National Par fruit residues (memencylon) 454 University of Kaiserslautern 15.9x 97.56 97.29 0.16 93.09 0.57 GCF_001579115.1 LQXU01 1924 1998 1998 31 3 39 1 Streptococcus_constellatus_homd_HMT_576 GCA_001579275.1 HMT-062 1B08 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-062 Corynebacterium simulans 1B08 66 2653230 59.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/579/275/GCA_001579275.1_ASM157927v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium simulans PRJNA279605 146827 SAMN03455924 ASM157927v1 Contig HGAP v. 2.0 2015-04-01T11:39:04.477 USA skin swab 454 NHGRI 100.0x 100 0.43 99.99 1.28 GCF_001579275.1 LTEB01 2477 2542 2542 7 5 52 1 Corynebacterium_simulans_homd_HMT_062 GCA_001579645.1 HMT-431 DD18 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 DD18 56 2111724 41.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/579/645/GCA_001579645.1_ASM157964v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_E PRJNA304333 68892 SAMN04325030 ASM157964v1 Scaffold Newbler v. 2.6 2015-12-08T09:10:03.226 Cote dIvoire: Thai National Pa oral cavity 454 University of Kaiserslautern 14.7x 89.04 98.17 0.62 99.97 0.13 GCF_001579645.1 LQZF01 1945 2027 0 40 3 38 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_001579645.1 HMT-431 DD18 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 DD18 56 2111724 41.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/579/645/GCA_001579645.1_ASM157964v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_E PRJNA304333 68892 SAMN04325030 ASM157964v1 Scaffold Newbler v. 2.6 2015-12-08T09:10:03.226 Cote dIvoire: Thai National Pa oral cavity 454 University of Kaiserslautern 14.7x 89.04 98.17 0.62 99.97 0.13 GCF_001579645.1 LQZF01 1945 2027 0 40 3 38 1 Streptococcus_infantis_clade_431_homd_HMT_431 GCA_001580405.1 HMT-692 NRRL B-3805 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-692 Mycolicibacterium neoaurum NRRL B-3805 1 5421338 66.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/580/405/GCA_001580405.1_ASM158040v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium neoaurum_A PRJNA266535 1795 SAMN03396774 ASM158040v1 Complete Genome segemehl v. 0.1.7-411 2015-03-10T07:47:49.156 missing soil Ion Torrent; Sanger MySterI 269.0x 92.87 99.62 1.44 100 0.01 GCF_001580405.1 5089 5174 5174 26 6 52 1 Mycolicibacterium_neoaurum_homd_HMT_692 GCA_001586215.1 HMT-062 PES1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-062 Corynebacterium simulans PES1 1 2737971 59.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/586/215/GCA_001586215.1_ASM158621v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium simulans PRJNA279606 146827 SAMN03455925 ASM158621v1 Complete Genome HGAP v. 2.0 2015-04-01T11:39:04.000 USA PacBio RSII NHGRI 100.0x 99.56 0.43 99.99 0.94 GCF_001586215.1 2554 2626 2626 7 12 52 1 Corynebacterium_simulans_homd_HMT_062 GCA_001586235.1 HMT-062 Wattiau Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-062 Corynebacterium simulans Wattiau 1 2598702 59.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/586/235/GCA_001586235.1_ASM158623v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium simulans PRJNA309522 146827 SAMN04435330 ASM158623v1 Complete Genome HGAP v. 2.0 2016-01-22T10:56:02.526 Belgium PacBio RSII NHGRI/NIH 100.0x 99.56 0.09 99.97 0.08 GCF_001586235.1 2397 2470 2470 8 12 52 1 Corynebacterium_simulans_homd_HMT_062 GCA_001587175.1 HMT-073 A12 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis A12 1 1874337 42.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/587/175/GCA_001587175.1_ASM158717v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA302800 1759399 SAMN04287214 ASM158717v1 Complete Genome HGAP.3 v. 1 2015-11-23T11:17:05.217 USA: Florida supragingival plaque from caries-free child PacBio University of Florida 100.0x 99.66 0 99.97 0 GCF_001587175.1 1769 1890 1890 47 12 61 1 Streptococcus_australis_homd_HMT_073 GCA_001588615.1 HMT-622 FSS8 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii FSS8 41 2151860 40.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/615/GCA_001588615.1_ASM158861v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280670 1302 SAMN03480641 ASM158861v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T00:38:18.873 United Kingdom Subacute bacterial endocarditis Illumina HiSeq University of Malaya 2000.0x 95.51 100 0 99.98 0.02 GCF_001588615.1 LAWF01 2043 2110 2110 25 2 39 1 Streptococcus_gordonii_homd_HMT_622 GCA_001588695.1 HMT-071 JPIBVI Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus JPIBVI 37 1792852 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/695/GCA_001588695.1_ASM158869v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA280674 1077464 SAMN03480682 ASM158869v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T02:47:19.000 USA dental plaque Illumina HiSeq University of Malaya 2000.0x 92.71 99.87 0.24 100 0.01 GCF_001588695.1 LAWI01 1730 1824 1824 45 3 45 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_001588695.1 HMT-071 JPIBVI Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus JPIBVI 37 1792852 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/695/GCA_001588695.1_ASM158869v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA280674 1077464 SAMN03480682 ASM158869v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T02:47:19.000 USA dental plaque Illumina HiSeq University of Malaya 2000.0x 92.71 99.87 0.24 100 0.01 GCF_001588695.1 LAWI01 1730 1824 1824 45 3 45 1 Streptococcus_oralis_HMT_071_398_707 GCA_001588715.1 HMT-758 MB451 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis MB451 27 2452761 42.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/715/GCA_001588715.1_ASM158871v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA280678 1305 SAMN03480686 ASM158871v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T03:06:19.817 United Kingdom Subacute bacterial endocarditis Illumina HiSeq University of Malaya 2000.0x 96.74 100 0 100 0.06 GCF_001588715.1 LAWK01 2331 2383 0 0 3 48 1 Streptococcus_sanguinis_homd_HMT_758 GCA_001588725.1 HMT-411 POW10 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis POW10 117 2042421 41.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/725/GCA_001588725.1_ASM158872v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA280685 1318 SAMN03480701 ASM158872v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T03:53:17.743 Australia missing Illumina HiSeq University of Malaya 2000.0x 94.27 100 0.11 100 0 GCF_001588725.1 LAWO01 1928 2017 2017 36 3 49 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001588735.1 HMT-622 PV40 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii PV40 43 2190985 40.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/735/GCA_001588735.1_ASM158873v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280650 1302 SAMN03480623 ASM158873v1 Contig CLC Genomics Workbench v. 6.5 2015-04-12T22:46:14.167 United Kingdom Subacute bacterial endocarditis Illumina HiSeq University of Malaya 2000.0x 95.61 100 0.75 100 0.33 GCF_001588735.1 LAVY01 2064 2164 2164 50 3 46 1 Streptococcus_gordonii_homd_HMT_622 GCA_001588775.1 HMT-622 Blackburn Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii Blackburn 50 2164498 40.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/775/GCA_001588775.1_ASM158877v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280654 1302 SAMN03480626 ASM158877v1 Contig CLC Genomics Workbench v. 6.5 2015-04-12T23:11:16.297 United Kingdom missing Illumina HiSeq University of Malaya 2000.0x 96.67 100 0 100 0.09 GCF_001588775.1 LAVZ01 2041 2113 2113 26 3 42 1 Streptococcus_gordonii_homd_HMT_622 GCA_001588795.1 HMT-622 Channon Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii Channon 33 2233494 40.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/795/GCA_001588795.1_ASM158879v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280660 1302 SAMN03480628 ASM158879v1 Contig CLC Genomics Workbench v. 6.5 2015-04-12T23:12:18.667 United Kingdom missing Illumina HiSeq University of Malaya 2000.0x 96.4 100 0.37 100 0.37 GCF_001588795.1 LAWA01 2142 2244 2244 56 3 42 1 Streptococcus_gordonii_homd_HMT_622 GCA_001588855.1 HMT-578 DOBICBV2 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus DOBICBV2 99 1979098 42.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/855/GCA_001588855.1_ASM158885v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_H PRJNA280663 45634 SAMN03480632 ASM158885v1 Contig CLC Genomics Workbench v. 6.5 2015-04-12T23:38:20.000 USA dental plaque Illumina HiSeq University of Malaya 2000.0x 94.99 100 0 100 0.08 GCF_001588855.1 LAWD01 1899 1975 1975 31 3 41 1 Streptococcus_cristatus_homd_HMT_578 GCA_001588875.1 HMT-758 FSS4 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis FSS4 63 2312671 43.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/875/GCA_001588875.1_ASM158887v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA280669 1305 SAMN03480635 ASM158887v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T00:07:14.767 United Kingdom Subacute bacterial endocarditis Illumina HiSeq University of Malaya 2000.0x 98 100 0.22 99.98 0.11 GCF_001588875.1 LAWE01 2200 2283 2283 30 3 49 1 Streptococcus_sanguinis_homd_HMT_758 GCA_001588895.1 HMT-758 FSS9 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis FSS9 20 2429261 43.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/895/GCA_001588895.1_ASM158889v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_Q PRJNA280671 1305 SAMN03480643 ASM158889v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T00:39:22.313 United Kingdom Subacute bacterial endocarditis Illumina HiSeq University of Malaya 2000.0x 95.15 100 0 99.99 0.07 GCF_001588895.1 LAWG01 2334 2416 2416 31 3 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_001588905.1 HMT-578 JPIIBBV4 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus JPIIBBV4 95 1991673 42.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/905/GCA_001588905.1_ASM158890v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_N PRJNA280672 45634 SAMN03480680 ASM158890v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T02:32:17.000 USA dental plaque Illumina HiSeq University of Malaya 2000.0x 94.91 99.63 0.25 99.99 0.16 GCF_001588905.1 LAWH01 1895 1982 1982 36 4 46 1 Streptococcus_cristatus_homd_HMT_578 GCA_001588935.1 HMT-622 M5 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii M5 67 2157804 40.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/935/GCA_001588935.1_ASM158893v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280676 1302 SAMN03480683 ASM158893v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T02:55:17.920 USA dental plaque Illumina HiSeq University of Malaya 2000.0x 95.48 100 0.37 99.99 0.34 GCF_001588935.1 LAWJ01 2019 2115 2115 51 3 41 1 Streptococcus_gordonii_homd_HMT_622 GCA_001588955.1 HMT-622 M99 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii M99 45 2166946 40.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/955/GCA_001588955.1_ASM158895v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280677 1302 SAMN03480687 ASM158895v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T03:06:21.347 USA Subacute bacterial endocarditis Illumina HiSeq University of Malaya 2000.0x 95.77 100 0.5 99.98 0.11 GCF_001588955.1 LAWL01 2034 2108 2108 27 3 43 1 Streptococcus_gordonii_homd_HMT_622 GCA_001588975.1 HMT-622 MW10 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii MW10 27 2186113 40.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/975/GCA_001588975.1_ASM158897v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280680 1302 SAMN03480689 ASM158897v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T03:24:13.867 Australia missing Illumina HiSeq University of Malaya 2000.0x 95.61 100 0.37 100 0.33 GCF_001588975.1 LAWM01 2060 2149 2149 47 3 38 1 Streptococcus_gordonii_homd_HMT_622 GCA_001588985.1 HMT-622 MB666 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii MB666 20 2307982 40.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/588/985/GCA_001588985.1_ASM158898v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280679 1302 SAMN03480688 ASM158898v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T03:23:17.107 United Kingdom Subacute bacterial endocarditis Illumina HiSeq University of Malaya 2000.0x 95.44 100 0.19 100 0.3 GCF_001588985.1 LAYG01 2215 2295 2295 30 3 46 1 Streptococcus_gordonii_homd_HMT_622 GCA_001589035.1 HMT-622 PK488 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii PK488 46 2202674 40.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/589/035/GCA_001589035.1_ASM158903v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280683 1302 SAMN03480700 ASM158903v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T03:41:22.533 USA subgingival dental plaque Illumina HiSeq University of Malaya 2000.0x 95.56 100 0.37 100 0.13 GCF_001589035.1 LAWN01 2075 2172 2172 56 3 37 1 Streptococcus_gordonii_homd_HMT_622 GCA_001589055.1 HMT-622 SK120 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii SK120 28 2164760 40.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/589/055/GCA_001589055.1_ASM158905v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280687 1302 SAMN03480740 ASM158905v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T04:08:18.383 United Kingdom oral cavity Illumina HiSeq University of Malaya 2000.0x 96.21 100 0 99.99 0.1 GCF_001589055.1 LAWQ01 2034 2135 2135 50 3 47 1 Streptococcus_gordonii_homd_HMT_622 GCA_001589065.1 HMT-622 SK12 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii SK12 27 2145819 40.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/589/065/GCA_001589065.1_ASM158906v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280686 1302 SAMN03480703 ASM158906v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T03:56:27.543 Denmark oral cavity Illumina HiSeq University of Malaya 2000.0x 95.9 100 0 99.98 0.04 GCF_001589065.1 LAWP01 2052 2129 2129 26 3 47 1 Streptococcus_gordonii_homd_HMT_622 GCA_001589095.1 HMT-622 SK184 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii SK184 53 2255061 40.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/589/095/GCA_001589095.1_ASM158909v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280688 1302 SAMN03480741 ASM158909v1 Contig CLC Genomics Workbench v. 6.5 2015-04-13T04:08:20.017 United Kingdom dental plaque Illumina HiSeq University of Malaya 2000.0x 95.65 100 0.12 100 0.19 GCF_001589095.1 LAWR01 2196 2273 2273 31 3 42 1 Streptococcus_gordonii_homd_HMT_622 GCA_001589145.1 HMT-622 FSS2 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii FSS2 18 2185691 40.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/589/145/GCA_001589145.1_ASM158914v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA280667 1302 SAMN03481559 ASM158914v1 Contig CLC Genomics Workbench v. 6.5 2015-04-14T01:30:18.983 United Kingdom Subacute bacterial endocarditis Illumina HiSeq University of Malaya 2000.0x 95.61 100 0.37 100 0.33 GCF_001589145.1 LAYI01 2066 2160 2160 44 3 46 1 Streptococcus_gordonii_homd_HMT_622 GCA_001590945.1 HMT-731 NBRC 14940 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-731 Klebsiella pneumoniae NBRC 14940 141 5463002 57.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/590/945/GCA_001590945.1_ASM159094v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella pneumoniae PRJDB272 1162296 SAMD00046711 ASM159094v1 Contig newbler v. 3.0 2016-02-09T01:00:36.000 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 182.0x 99.99 100 0.97 100 0.67 GCF_001590945.1 BCTV01 5086 5258 5258 126 2 43 1 Klebsiella_pneumoniae_homd_HMT_731 GCA_001591205.1 HMT-663 NBRC 14161 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-663 Stenotrophomonas maltophilia NBRC 14161 131 4936723 66.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/591/205/GCA_001591205.1_ASM159120v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas maltophilia PRJDB412 1220593 SAMD00046746 ASM159120v1 Contig newbler v. 3.0 2016-02-09T01:00:58.000 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 110.0x 99.99 100 0.34 100 0.03 GCF_001591205.1 BCUI01 4530 4639 4639 37 2 69 1 Stenotrophomonas_maltophilia_homd_HMT_663 GCA_001591365.1 HMT-717 NBRC 15149 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-717 Variovorax paradoxus NBRC 15149 16 6664268 67.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/591/365/GCA_001591365.1_ASM159136v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax;s__Variovorax paradoxus PRJDB1090 1321610 SAMD00046749 ASM159136v1 Contig newbler v. 3.0 2016-02-09T01:01:00.000 missing 454 GS-FLX Titanium; Illumina MiSeq National Institute of Technology and Evaluation 107.0x 100 0 100 0.18 GCF_001591365.1 BCUT01 6205 6300 6300 25 3 66 1 Variovorax_paradoxus_homd_HMT_717 GCA_001591845.1 HMT-529 NBRC 13951 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-529 Lactobacillus acidophilus NBRC 13951 18 1955274 34.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/591/845/GCA_001591845.1_ASM159184v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus PRJDB1353 1423717 SAMD00046914 ASM159184v1 Contig newbler v. 3.0 2016-02-13T01:00:40.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 129.0x 99.99 98.94 0.06 99.86 0.61 GCF_001591845.1 BCVR01 1872 1974 1974 43 3 55 1 Lactobacillus_acidophilus_homd_HMT_529 GCA_001592325.1 HMT-739 NBRC 14587 Named Cultivated Oral (Abundance: Medium) HMT-739 Arachnia propionica NBRC 14587 26 3385209 66.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/592/325/GCA_001592325.1_ASM159232v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia propionica PRJDB282 1218109 SAMD00047213 ASM159232v1 Contig newbler v. 3.0 2016-02-24T01:00:24.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 190.0x 99.99 97.47 1.75 100 0.6 GCF_001592325.1 BCWS01 2997 3075 3075 22 3 52 1 Arachnia_propionica_homd_HMT_739 GCA_001593525.1 HMT-758 NCTC 7863 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis NCTC 7863 110 2302607 43.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/593/525/GCA_001593525.1_ASM159352v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA280651 1305 SAMN03480625 ASM159352v1 Contig CLC Genomics Workbench v. 6.5 2015-04-12T23:04:18.000 USA Subacute bacterial endocarditis Illumina HiSeq University of Malaya 2000.0x 99.95 99.81 1.2 99.92 3.83 GCF_001593525.1 LBFD01 2192 2262 2262 27 2 40 1 Streptococcus_sanguinis_homd_HMT_758 GCA_001594245.1 HMT-531 VT1169 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans VT1169 1 2129092 44.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/594/245/GCA_001594245.1_ASM159424v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA288376 714 SAMN03799080 ASM159424v1 Complete Genome SMRT Analysis v. 2.3 2015-06-27T18:21:36.120 missing missing PacBio The University of Texas at Austin 350.0x 99.1 99.89 0.08 100 0.02 GCF_001594245.1 2022 2154 2154 58 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_001594265.1 HMT-531 624 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 624 1 2367908 44.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/594/265/GCA_001594265.1_ASM159426v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA288377 714 SAMN03799081 ASM159426v1 Complete Genome SMRT Analysis v. 2.3 2015-06-27T18:21:36.453 missing missing PacBio The University of Texas at Austin 350.0x 97.83 99.89 0.23 100 0.13 GCF_001594265.1 2281 2441 2441 85 19 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_001594285.1 HMT-643 ATCC 49046 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia ATCC 49046 55 2673161 43.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/594/285/GCA_001594285.1_ASM159428v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA281562 28131 SAMN03494306 ASM159428v1 Scaffold A5 Assembly Pipeline v. A5-miseq 20140604 2015-04-21T03:06:05.563 USA: Buffalo, NY periodontal pocket Illumina HiSeq Kyung Hee University 961.0x 96.45 99.32 0 99.87 0.02 GCF_001594285.1 LBGT01 2252 2317 2317 10 8 46 1 Prevotella_intermedia_homd_HMT_643 GCA_001596475.1 HMT-690 LS_1260 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum LS_1260 62 2244163 35.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/596/475/GCA_001596475.1_ASM159647v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04566685 ASM159647v1 Contig SPAdes v. 3.5 2016-03-18T07:47:04.000 Denmark blood Illumina HiSeq Aarhus University 60.0x 98.61 100 0 100 0.2 GCF_001596475.1 LVDZ01 2207 2271 2271 20 2 41 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001596485.1 HMT-690 LS_1264 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum LS_1264 117 2334503 34.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/596/485/GCA_001596485.1_ASM159648v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04566686 ASM159648v1 Contig SPAdes v. 3.5 2016-03-18T07:50:05.000 Denmark blood Illumina HiSeq Aarhus University 60.0x 99.81 100 0 100 0.52 GCF_001596485.1 LVEA01 2249 2319 2319 17 3 49 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001596495.1 HMT-690 LS_1197 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum LS_1197 38 1981459 35.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/596/495/GCA_001596495.1_ASM159649v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04566684 ASM159649v1 Contig SPAdes v. 3.5 2016-03-18T07:43:04.000 Denmark blood Illumina HiSeq Aarhus University 20.0x 98.63 100 0 100 0.11 GCF_001596495.1 LVDY01 1811 1877 1877 17 2 46 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597305.1 HMT-690 LS_1195 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum LS_1195 36 2231951 35.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/305/GCA_001597305.1_ASM159730v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04566683 ASM159730v1 Contig SPAdes v. 3.5 2016-03-18T07:39:05.000 Denmark blood Illumina HiSeq Aarhus University 60.0x 98.61 100 0 100 0.21 GCF_001597305.1 LVEQ01 2135 2218 2218 20 14 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597315.1 HMT-690 LS_1266 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum LS_1266 83 2099301 35.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/315/GCA_001597315.1_ASM159731v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04569318 ASM159731v1 Contig SPAdes v. 3.5 2016-03-19T17:08:05.000 Denmark blood Illumina HiSeq Aarhus University 60.0x 98.63 100 0 100 0.02 GCF_001597315.1 LVER01 2013 2085 2085 17 2 52 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597325.1 HMT-690 LS_1280 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum LS_1280 56 2098951 35.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/325/GCA_001597325.1_ASM159732v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04569319 ASM159732v1 Contig SPAdes v. 3.5 2016-03-19T17:14:05.000 Denmark blood Illumina HiSeq Aarhus University 60.0x 98.53 100 0 100 0.19 GCF_001597325.1 LVET01 1978 2041 2041 16 3 43 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597335.1 HMT-690 LS_1272 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum LS_1272 32 2137371 35.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/335/GCA_001597335.1_ASM159733v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04569323 ASM159733v1 Contig SPAdes v. 3.5 2016-03-19T17:27:05.000 Denmark blood Illumina MiSeq Aarhus University 60.0x 98.46 100 0 100 0.09 GCF_001597335.1 LVES01 1984 2069 2069 18 18 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597385.1 HMT-690 LS_1291 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum LS_1291 37 2100099 35.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/385/GCA_001597385.1_ASM159738v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04569320 ASM159738v1 Contig SPAdes v. 3.5 2016-03-19T17:19:05.000 Denmark blood Illumina HiSeq Aarhus University 60.0x 99.8 100 0 100 0.03 GCF_001597385.1 LVEU01 1988 2051 2051 16 3 43 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597395.1 HMT-690 F1248 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1248 49 2239285 34.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/395/GCA_001597395.1_ASM159739v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04570262 ASM159739v1 Contig SPAdes v. 3.5 2016-03-21T04:18:04.000 Denmark throat swab Illumina HiSeq Aarhus University 60.0x 98.59 100 0 100 0.22 GCF_001597395.1 LVEV01 2208 2276 2276 22 3 42 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597405.1 HMT-690 F1285 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1285 70 2339372 34.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/405/GCA_001597405.1_ASM159740v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04570266 ASM159740v1 Contig SPAdes v. 3.5 2016-03-21T04:25:05.000 Denmark throat swab Illumina HiSeq Aarhus University 60.0x 98.44 100 0 100 0.35 GCF_001597405.1 LVEY01 2306 2374 2374 20 2 45 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597445.1 HMT-690 F1250 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1250 46 2418865 34.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/445/GCA_001597445.1_ASM159744v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04570264 ASM159744v1 Contig SPAdes v. 3.5 2016-03-21T04:21:07.000 Denmark throat swab Illumina HiSeq Aarhus University 60.0x 98.52 100 0 100 0.27 GCF_001597445.1 LVEW01 2452 2514 2514 20 2 39 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597465.1 HMT-690 F1267 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1267 71 2285683 35.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/465/GCA_001597465.1_ASM159746v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04570265 ASM159746v1 Contig SPAdes v. 3.5 2016-03-21T04:23:04.000 Denmark throat swab Illumina HiSeq Aarhus University 60.0x 98.64 100 0 100 0.27 GCF_001597465.1 LVEX01 2204 2269 2269 21 2 41 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597475.1 HMT-690 F1309 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1309 51 2139316 35.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/475/GCA_001597475.1_ASM159747v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04570267 ASM159747v1 Contig SPAdes v. 3.5 2016-03-21T04:27:04.000 Denmark throat swab Illumina HiSeq Aarhus University 60.0x 98.6 100 0 100 0.16 GCF_001597475.1 LVEZ01 2051 2113 2113 20 2 39 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597485.1 HMT-690 F1314 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1314 105 2084658 35.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/485/GCA_001597485.1_ASM159748v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04570268 ASM159748v1 Contig SPAdes v. 3.5 2016-03-21T04:28:04.000 Denmark throat swab Illumina HiSeq Aarhus University 60.0x 99.79 100 0 100 0.04 GCF_001597485.1 LVFA01 1937 1994 1994 16 3 37 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597525.1 HMT-690 F1353 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1353 45 2112695 35.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/525/GCA_001597525.1_ASM159752v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04570271 ASM159752v1 Contig SPAdes v. 3.5 2016-03-21T04:35:05.000 Denmark throat swab Illumina HiSeq Aarhus University 60.0x 99.78 100 0 100 0.04 GCF_001597525.1 LVFD01 2013 2082 2082 16 3 49 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597545.1 HMT-690 F1330 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1330 72 2110484 35.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/545/GCA_001597545.1_ASM159754v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04570269 ASM159754v1 Contig SPAdes v. 3.5 2016-03-21T04:30:07.000 Denmark throat swab Illumina HiSeq Aarhus University 60.0x 98.62 100 0 100 0.21 GCF_001597545.1 LVFB01 1979 2044 2044 20 2 42 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597565.1 HMT-690 F1365 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1365 47 2173839 35.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/565/GCA_001597565.1_ASM159756v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04570273 ASM159756v1 Contig SPAdes v. 3.5 2016-03-21T04:37:07.000 Denmark throat swab Illumina HiSeq Aarhus University 60.0x 98.62 100 0 100 0.2 GCF_001597565.1 LVFE01 2102 2173 2173 20 2 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001597575.1 HMT-690 F1351 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1351 56 2201834 34.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/575/GCA_001597575.1_ASM159757v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA315619 143387 SAMN04570270 ASM159757v1 Contig SPAdes v. 3.5 2016-03-21T04:32:05.000 Denmark throat swab Illumina HiSeq Aarhus University 60.0x 98.66 100 0 100 0.15 GCF_001597575.1 LVFC01 2184 2252 2252 17 3 47 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_001598595.1 HMT-343 NBRC 15126 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-343 Achromobacter xylosoxidans NBRC 15126 63 6792737 67.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/598/595/GCA_001598595.1_ASM159859v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter;s__Achromobacter xylosoxidans PRJDB238 1216976 SAMD00046892 ASM159859v1 Contig newbler v. 3.0 2016-02-13T01:00:23.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 96.0x 99.99 99.53 0.58 100 1.56 GCF_001598595.1 BCZG01 6136 6235 6235 33 5 60 1 Achromobacter_xylosoxidans_homd_HMT_343 GCA_001598655.1 HMT-828 NBRC 13691 Named Cultivated Pathogen (Abundance: Scarce) HMT-828 Bordetella pertussis NBRC 13691 193 5115418 68.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/598/655/GCA_001598655.1_ASM159865v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella;s__Bordetella pertussis PRJDB244 1216982 SAMD00046893 ASM159865v1 Contig newbler v. 3.0 2016-02-13T01:00:24.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 115.0x 99.99 99.53 0.06 100 0.54 GCF_001598655.1 BCZI01 4785 4870 4870 18 4 62 1 Bordetella_pertussis_homd_HMT_828 GCA_001598795.1 HMT-023 NBRC 14950 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-023 Delftia acidovorans NBRC 14950 91 6630389 66.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/598/795/GCA_001598795.1_ASM159879v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas acidovorans PRJDB280 1218107 SAMD00046897 ASM159879v1 Contig newbler v. 3.0 2016-02-13T01:00:27.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 95.0x 99.99 99.85 0.21 100 0.2 GCF_001598795.1 BCZP01 5885 5986 5986 32 4 64 1 Delftia_acidovorans_homd_HMT_023 GCA_001611425.1 HMT-550 ST20130939 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus ST20130939 2 2746829 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/611/425/GCA_001611425.1_ASM161142v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA298748 1280 SAMN04166389 ASM161142v1 Complete Genome Newbler v. 2.9 2015-10-14T13:52:17.484 France 26-year old man with an implant associated osteitis 454 LNCC 66.0x 99.07 99.37 0.08 100 0.12 GCF_001611425.1 2508 2708 2708 118 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_001611905.1 HMT-229 YZ Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-229 Arthrospira platensis YZ 1 6520772 44.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/611/905/GCA_001611905.1_ASM161190v1 d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira;s__Limnospira platensis PRJNA299041 1738638 SAMN04192332 ASM161190v1 Chromosome phredPhrap v. SEP-2007 2015-10-17T09:41:06.000 China: Lijiang, Chenghai Lake ABI3730; Illumina GAIIx Wenzhou Medical University 86.0x 99.24 99.71 0.22 99.99 0.14 GCF_001611905.1 6246 6667 6667 368 6 46 1 Arthrospira_platensis_homd_HMT_229 GCA_001611955.1 HMT-120 S167 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus S167 2 2560146 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/611/955/GCA_001611955.1_ASM161195v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA306712 1283 SAMN04361561 ASM161195v1 Complete Genome CLCbio CLC Genomics Workbench v. 7.5.1 2015-12-22T00:28:03.187 South Korea leaf vegetable PacBio; Illumina MiSeq National Institute of Agricultural Science 924.0x 99.5 99.62 0 99.99 0.35 GCF_001611955.1 2458 2540 0 0 19 62 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_001618015.1 HMT-610 CD-NF1 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens CD-NF1 38 2253927 49.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/618/015/GCA_001618015.1_ASM161801v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJNA274665 484 SAMN03329000 ASM161801v1 Contig Spades v. 3.5 2015-02-04T10:21:24.896 Italy: Naples duodenal mucosa 454 CEINGE Biotecnologie Avanzate s.c.a r.l., via Gaetano Salvatore 486-80145-Napoli 18.0x 94.9 98.83 0.23 99.98 0.06 GCF_001618015.1 LAEH01 2231 2307 2307 28 3 44 1 Neisseria_flavescens_homd_HMT_610 GCA_001618065.1 HMT-610 CD-NF2 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens CD-NF2 73 2345024 48.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/618/065/GCA_001618065.1_ASM161806v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_A PRJNA274665 484 SAMN03329001 ASM161806v1 Contig Spades v. 3.5 2015-02-04T10:23:48.536 Italy: Naples duodenal mucosa 454 CEINGE Biotecnologie Avanzate s.c.a r.l., via Gaetano Salvatore 486-80145-Napoli 21.0x 94.54 99.48 0 99.98 0.58 GCF_001618065.1 LAEI01 2289 2356 2356 17 3 46 1 Neisseria_flavescens_homd_HMT_610 GCA_001618075.1 HMT-610 CD-NF3 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens CD-NF3 37 2333017 48.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/618/075/GCA_001618075.1_ASM161807v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_D PRJNA274665 484 SAMN03329002 ASM161807v1 Contig Spades v. 3.5 2015-02-04T10:26:48.883 Italy: Naples duodenal mucosa 454 CEINGE Biotecnologie Avanzate s.c.a r.l., via Gaetano Salvatore 486-80145-Napoli 24.0x 94.49 99.36 0.23 99.99 0.27 GCF_001618075.1 LAEJ01 2329 2402 2402 17 3 52 1 Neisseria_flavescens_homd_HMT_610 GCA_001618085.1 HMT-610 CNF Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens CNF 67 2316621 48.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/618/085/GCA_001618085.1_ASM161808v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_C PRJNA274665 484 SAMN03329021 ASM161808v1 Contig Spades v. 3.5 2015-02-04T10:32:33.783 Italy: Naples oropharyngeal swab 454 CEINGE Biotecnologie Avanzate s.c.a r.l., via Gaetano Salvatore 486-80145-Napoli 19.0x 94.47 99.7 0.56 100 1.25 GCF_001618085.1 LAEK01 2294 2365 2365 17 3 50 1 Neisseria_flavescens_homd_HMT_610 GCA_001618905.1 HMT-818 ZLR003 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-818 Limosilactobacillus reuteri ZLR003 1 2234097 38.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/618/905/GCA_001618905.1_ASM161890v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus suis PRJNA290298 1598 SAMN03879966 ASM161890v1 Complete Genome SOAP denovo v. 2.04, Liet al. 2010 2015-07-19T23:08:17.000 China: Beijing caecum mucosa from a healthy weaned piglet Illumina Hiseq; PacBio RSII Institute of Animal Husbandry and Veterinary Medicine 1231.0x 99.59 99.45 0 99.99 0.23 GCF_001618905.1 2176 2309 2309 45 18 69 1 Limosilactobacillus_reuteri_homd_HMT_818 GCA_001625005.1 HMT-686 ATCC 55676 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans ATCC 55676 24 2050195 36.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/625/005/GCA_001625005.1_ASM162500v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA309131 1309 SAMN04420782 ASM162500v1 Contig ABySS v. 1.9.0; DNAstar SeqMan NGen v. 12 2016-01-19T09:56:02.330 USA: Boston oral cavity Illumina MiSeq Texas A&M 525.0x 99.32 100 0 100 0.23 GCF_001625005.1 LTAK01 1908 2012 2012 45 8 51 0 Streptococcus_mutans_homd_HMT_686 GCA_001630765.1 HMT-368 DSM 43672 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea DSM 43672 57 3505372 70.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/630/765/GCA_001630765.1_scaffolds d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA315745 37915 SAMN04543680 scaffolds Contig Ray v. 2.3.1 2016-03-09T14:21:02.000 Germany soil Illumina MiSeq Jacobs University 1.0x 99.41 0.2 99.99 0.23 GCF_001630765.1 LVFF01 3264 3350 3350 20 7 58 1 Dietzia_cinnamea_homd_HMT_368 GCA_001632285.1 HMT-833 CCUG 353 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis CCUG 353 18 1885013 41.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/632/285/GCA_001632285.1_ASM163228v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA302716 480 SAMN04606841 ASM163228v1 Scaffold CLC NGS Cell v. 8 2016-04-05T03:55:02.000 Unknown Unknown Illumina MiSeq; IonTorrent TAILORED-Treatment project 260.0x 99.99 99.73 0.27 100 0.01 GCF_001632285.1 LWAH01 1698 1756 1756 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_001632305.1 HMT-921 5162 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-921 Paenibacillus glucanolyticus 5162 1 5897585 49.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/632/305/GCA_001632305.1_ASM163230v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus glucanolyticus PRJNA309413 59843 SAMN04432816 ASM163230v1 Chromosome HGAP v. 2015 2016-01-21T12:24:02.000 unknown soil PacBio; Illumina MiSeq North Carolina State University 240.0x 99.99 99.85 0.16 100 0.17 GCF_001632305.1 5336 5436 0 0 24 75 1 Paenibacillus_glucanolyticus_homd_HMT_921 GCA_001633025.1 HMT-921 SLM1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-921 Paenibacillus glucanolyticus SLM1 3 7039886 48.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/633/025/GCA_001633025.1_ASM163302v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus glucanolyticus PRJNA309413 59843 SAMN04432833 ASM163302v1 Contig HGAP v. 2015 2016-01-21T12:46:08.000 USA black liquor from pulp mill stream PacBio; Illumina MiSeq North Carolina State University 245.0x 98.99 99.85 0.28 100 0.11 GCF_001633025.1 LWMH01 6477 6579 0 0 24 77 1 Paenibacillus_glucanolyticus_homd_HMT_921 GCA_001639025.1 HMT-030 LCDC880199 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-030 Corynebacterium afermentans LCDC880199 24 2345615 64.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/639/025/GCA_001639025.1_ASM163902v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium afermentans PRJNA319541 144183 SAMN04893626 ASM163902v1 Contig SPAdes v. 3.1.1 2016-04-25T13:01:02.217 Canada: Newfoundland Illumina MiSeq Public Health Agency of Canada 85.0x 99.99 97.32 0 99.86 0.03 GCF_001639025.1 LXGG01 2163 2232 2232 8 3 57 1 Corynebacterium_afermentans_homd_HMT_030 GCA_001639275.1 HMT-815 DSM 7256 Named Cultivated Oral (Abundance: Scarce) HMT-815 Methanobrevibacter oralis DSM 7256 136 2140433 27.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/639/275/GCA_001639275.1_ASM163927v1 d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanocatella;s__Methanocatella oralis PRJNA318760 66851 SAMN04867341 ASM163927v1 Contig SPAdes v. 3.7.0 2016-04-18T11:14:05.000 not collected oral cavity Illumina Goettingen Genomics Laboratory 179.0x 100 0 99.84 0.53 GCF_001639275.1 LWMU01 1994 2029 2029 3 2 30 0 Methanobrevibacter_oralis_homd_HMT_815 GCA_001639375.1 HMT-707 CCUG 24891 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CCUG 24891 40 1913574 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/639/375/GCA_001639375.1_ASM163937v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA302716 1303 SAMN04625306 ASM163937v1 Scaffold CLC NGS Cell v. 8 2016-04-08T09:40:03.000 Sweden mouth Illumina MiSeq TAILORED-Treatment project 100.0x 99.99 99.47 0.24 100 0.03 GCF_001639375.1 LWCF01 1794 1885 1885 38 4 48 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_001639375.1 HMT-707 CCUG 24891 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CCUG 24891 40 1913574 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/639/375/GCA_001639375.1_ASM163937v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA302716 1303 SAMN04625306 ASM163937v1 Scaffold CLC NGS Cell v. 8 2016-04-08T09:40:03.000 Sweden mouth Illumina MiSeq TAILORED-Treatment project 100.0x 99.99 99.47 0.24 100 0.03 GCF_001639375.1 LWCF01 1794 1885 1885 38 4 48 1 Streptococcus_oralis_HMT_071_398_707 GCA_001640865.1 HMT-975 CL03T12C01 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-975 Phocaeicola dorei CL03T12C01 1 5310365 41.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/640/865/GCA_001640865.1_ASM164086v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei PRJNA285067 997877 SAMN03737480 ASM164086v1 Complete Genome SMRT Analysis v. 2.2.0 2015-05-27T12:28:20.000 not applicable PacBio University of Florida 193.2x 99.32 98.12 0.38 100 0.22 GCF_001640865.1 4349 4481 4481 21 21 89 1 Phocaeicola_dorei_homd_HMT_975 GCA_001642025.1 HMT-791 NTS 31307302 Named Cultivated Skin (Abundance: Medium) HMT-791 Cutibacterium namnetense NTS 31307302 24 2369714 60.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/642/025/GCA_001642025.1_ASM164202v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium namnetense PRJNA313504 1574624 SAMN04524164 ASM164202v1 Scaffold Velvet v. 1.2.10 2016-03-01T05:54:02.000 France: Nantes Bone tissue Illumina MiSeq Nantes University Hospital 127.0x 99.01 0 100 0.12 GCF_001642025.1 LWHO01 2178 2254 2254 23 3 49 1 Cutibacterium_namnetense_homd_HMT_791 GCA_001646625.1 HMT-731 W14 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-731 Klebsiella pneumoniae W14 3 5495481 57.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/646/625/GCA_001646625.1_ASM164662v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella pneumoniae PRJNA321220 573 SAMN04992856 ASM164662v1 Complete Genome RS_HGAP Assembly 3 in SMRT Analysis v. 2.3.0 2016-05-12T05:01:02.000 China: Beijing fecal sample Illumina Hiseq 4000 Institute of Disease Control and Prevention 134.0x 99.15 100 0.31 100 0.47 GCF_001646625.1 5054 5168 0 0 25 88 1 Klebsiella_pneumoniae_homd_HMT_731 GCA_001647695.1 HMT-821 VAN2 Named Cultivated Pathogen (Abundance: Scarce) HMT-821 Haemophilus ducreyi VAN2 1 1589620 37.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/647/695/GCA_001647695.1_ASM164769v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B;s__Haemophilus_B ducreyi PRJNA318024 730 SAMN04632440 ASM164769v1 Complete Genome HGAP3 v. 2.3 2016-04-11T13:29:04.797 Vanuatu cutaneous ulcer PacBio Centers for Disease Control and Prevention 79.0x 99.95 99.6 0 100 0.02 GCF_001647695.1 1519 1606 1606 17 19 50 1 Haemophilus_ducreyi_homd_HMT_821 GCA_001647765.1 HMT-821 VAN4 Named Cultivated Pathogen (Abundance: Scarce) HMT-821 Haemophilus ducreyi VAN4 1 1673048 38.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/647/765/GCA_001647765.1_ASM164776v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B;s__Haemophilus_B ducreyi PRJNA318024 730 SAMN04632442 ASM164776v1 Complete Genome HGAP3 v. 2.3 2016-04-11T13:29:04.953 Vanuatu cutaneous ulcer PacBio Centers for Disease Control and Prevention 74.0x 97.92 99.54 0.02 100 0.09 GCF_001647765.1 1644 1731 1731 18 19 49 1 Haemophilus_ducreyi_homd_HMT_821 GCA_001647795.1 HMT-821 VAN5 Named Cultivated Pathogen (Abundance: Scarce) HMT-821 Haemophilus ducreyi VAN5 1 1667484 38.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/647/795/GCA_001647795.1_ASM164779v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B;s__Haemophilus_B ducreyi PRJNA318024 730 SAMN04632443 ASM164779v1 Complete Genome HGAP3 v. 2.3 2016-04-11T13:29:05.033 Vanuatu cutaneous ulcer PacBio Centers for Disease Control and Prevention 77.0x 97.92 99.54 0.02 100 0.09 GCF_001647795.1 1634 1721 1721 18 19 49 1 Haemophilus_ducreyi_homd_HMT_821 GCA_001647855.1 HMT-821 GHA3 Named Cultivated Pathogen (Abundance: Scarce) HMT-821 Haemophilus ducreyi GHA3 1 1738543 38.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/647/855/GCA_001647855.1_ASM164785v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B;s__Haemophilus_B ducreyi PRJNA318024 730 SAMN04632446 ASM164785v1 Complete Genome HGAP3 v. 2.3 2016-04-11T13:29:05.320 Ghana cutaneous ulcer PacBio Centers for Disease Control and Prevention 132.0x 97.92 99.66 0.02 100 0.2 GCF_001647855.1 1724 1814 1814 21 19 49 1 Haemophilus_ducreyi_homd_HMT_821 GCA_001647875.1 HMT-821 GHA5 Named Cultivated Pathogen (Abundance: Scarce) HMT-821 Haemophilus ducreyi GHA5 1 1738559 38.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/647/875/GCA_001647875.1_ASM164787v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B;s__Haemophilus_B ducreyi PRJNA318024 730 SAMN04632447 ASM164787v1 Complete Genome HGAP3 v. 2.3 2016-04-11T13:29:05.450 Ghana cutaneous ulcer PacBio Centers for Disease Control and Prevention 257.0x 97.92 99.43 0.02 100 0.74 GCF_001647875.1 1731 1821 1821 21 19 49 1 Haemophilus_ducreyi_homd_HMT_821 GCA_001647915.1 HMT-821 GHA9 Named Cultivated Pathogen (Abundance: Scarce) HMT-821 Haemophilus ducreyi GHA9 1 1775503 38.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/647/915/GCA_001647915.1_ASM164791v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B;s__Haemophilus_B ducreyi PRJNA318024 730 SAMN04632449 ASM164791v1 Complete Genome HGAP3 v. 2.3 2016-04-11T13:29:05.637 Ghana cutaneous ulcer PacBio Centers for Disease Control and Prevention 223.0x 97.8 99.32 0.02 100 0.17 GCF_001647915.1 1776 1866 1866 20 19 50 1 Haemophilus_ducreyi_homd_HMT_821 GCA_001648235.1 HMT-577 NML01-0328 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens NML01-0328 12 2203048 55.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/648/235/GCA_001648235.1_ASM164823v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA310649 539 SAMN04931630 ASM164823v1 Contig SPAdes v. 3.5.0 2016-05-02T13:12:03.000 Canada: Regina left hand Illumina MiSeq Public Health Agency of Canada 80.7x 96.03 96.5 0.68 100 0.21 GCF_001648235.1 LXSF01 2152 2214 2214 12 3 46 1 Eikenella_corrodens_homd_HMT_577 GCA_001648245.1 HMT-577 NML04-0072 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens NML04-0072 50 2423039 55.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/648/245/GCA_001648245.1_ASM164824v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA310649 539 SAMN04931631 ASM164824v1 Contig SPAdes v. 3.5.0 2016-05-02T13:12:03.000 Canada: Winnipeg anastomosis Illumina MiSeq Public Health Agency of Canada 65.1x 97.32 96.49 0.56 100 0.11 GCF_001648245.1 LXSG01 2348 2412 2412 11 3 49 1 Eikenella_corrodens_homd_HMT_577 GCA_001648255.1 HMT-577 NML01-0040 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens NML01-0040 35 2258481 55.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/648/255/GCA_001648255.1_ASM164825v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA310649 539 SAMN04931629 ASM164825v1 Contig SPAdes v. 3.5.0 2016-05-02T13:12:03.000 Canada: Regina finger MiSeq Public Health Agency of Canada 256.0x 99.14 96.49 0.45 100 0.28 GCF_001648255.1 LXSE01 2202 2265 2265 12 3 47 1 Eikenella_corrodens_homd_HMT_577 GCA_001648265.1 HMT-577 NML120819 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens NML120819 35 2408287 55.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/648/265/GCA_001648265.1_ASM164826v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA310649 539 SAMN04931632 ASM164826v1 Contig SPAdes v. 3.1.1 2016-05-02T13:12:03.000 Canada: Winnipeg finger Illumina MiSeq Public Health Agency of Canada 86.0x 95.73 96.5 0.62 100 0.12 GCF_001648265.1 LXSH01 2333 2395 2395 12 3 46 1 Eikenella_corrodens_homd_HMT_577 GCA_001648315.1 HMT-577 NML130388 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens NML130388 13 2188187 55.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/648/315/GCA_001648315.1_ASM164831v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA310649 539 SAMN04931633 ASM164831v1 Contig SPAdes v. 3.1.1 2016-05-02T13:12:03.000 Canada: St John peritoneal fluid Illumina MiSeq Public Health Agency of Canada 104.0x 96.04 96.52 0.73 100 0.17 GCF_001648315.1 LXSI01 2115 2180 2180 13 5 46 1 Eikenella_corrodens_homd_HMT_577 GCA_001648335.1 HMT-577 NML140207 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens NML140207 55 2197973 55.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/648/335/GCA_001648335.1_ASM164833v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA310649 539 SAMN04931634 ASM164833v1 Contig SPAdes v. 3.1.1 2016-05-02T13:12:03.000 Canada: Vancouver pelvic abscess Illumina MiSeq Public Health Agency of Canada 104.0x 97.21 96.49 0 100 0.08 GCF_001648335.1 LXSJ01 2057 2119 2119 12 3 46 1 Eikenella_corrodens_homd_HMT_577 GCA_001648835.1 HMT-823 7935681 Named Cultivated Pathogen (Abundance: Scarce) HMT-823 Mycobacterium leprae 7935681 107 3266556 57.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/648/835/GCA_001648835.1_ASM164883v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium leprae PRJNA316192 1297124 SAMN04578110 ASM164883v1 Scaffold ABySS v. 1.5.2 2016-03-24T07:19:03.057 NA patient Illumina HiSeq Eurofins Genomics India Pvt ltd 200.0x 87.88 1 99.98 0.03 GCF_001648835.1 LVXE01 3980 4051 4051 21 3 46 1 Mycobacterium_leprae_homd_HMT_823 GCA_001650475.1 HMT-116 H36 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis H36 31 2418436 32.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/650/475/GCA_001650475.1_ASM165047v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA317600 29388 SAMN04621681 ASM165047v1 Contig A5 Assembly Pipeline v. a5-miseq-macOS-20140521 2016-04-06T19:58:02.000 USA: California air Illumina UC Berkeley 258.0x 99.82 99.75 0.34 99.99 0.39 GCF_001650475.1 LWCQ01 2341 2468 2468 55 10 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_001652275.1 HMT-848 BA112 Named Cultivated Oral (Abundance: Medium) HMT-848 Peptidiphaga gingivicola BA112 3 2524828 64.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/652/275/GCA_001652275.1_ASM165227v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Peptidiphaga;s__Peptidiphaga gingivicola PRJNA317166 2741497 SAMN04600420 ASM165227v1 Contig SPAdes v. 3.5 2016-04-01T14:25:03.000 USA: Columbus, Ohio subgingival plaque Illumina HiSeq The Ohio State University 1355.0x 98.33 0.83 99.95 0.15 GCF_001652275.1 LVZK01 2060 2123 2123 5 9 48 1 Peptidiphaga_gingivicola_homd_HMT_848 GCA_001653495.1 HMT-823 3125609 Named Cultivated Pathogen (Abundance: Scarce) HMT-823 Mycobacterium leprae 3125609 107 3266420 57.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/653/495/GCA_001653495.1_ASM165349v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium leprae PRJNA322730 1297123 SAMN05172957 ASM165349v1 Scaffold ABySS v. 1.5.2 2016-05-25T02:26:02.900 NA patient Illumina HiSeq Eurofins Genomics India Pvt Ltd. 580.0x 87.97 1 99.98 0.03 GCF_001653495.1 LYPH01 3946 4017 4017 21 3 46 1 Mycobacterium_leprae_homd_HMT_823 GCA_001656095.1 HMT-833 F18 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis F18 26 1953951 41.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/656/095/GCA_001656095.1_ASM165609v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA297370 480 SAMN04122790 ASM165609v1 Contig Newbler v. 2.6 2015-09-29T13:57:36.000 Netherlands sputum 454 Drexel University College of Medicine 24.3x 95.87 99.18 0.27 99.98 0.01 GCF_001656095.1 LXHT01 1787 1844 1844 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_001656115.1 HMT-833 A9 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis A9 24 1905073 41.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/656/115/GCA_001656115.1_ASM165611v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA297370 480 SAMN04122787 ASM165611v1 Contig Newbler v. 2.6 2015-09-29T13:50:35.037 not collected NA 454 Drexel University College of Medicine 24.7x 95.86 99.18 0.27 99.97 0.15 GCF_001656115.1 LXHW01 1728 1784 1784 8 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_001656255.1 HMT-833 Z18 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis Z18 30 1881225 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/656/255/GCA_001656255.1_ASM165625v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA297370 480 SAMN04122845 ASM165625v1 Contig Newbler v. 2.6 2015-09-29T15:03:27.873 Sweden Pharynx 454 Drexel University College of Medicine 17.3x 95.78 98.83 0.27 99.97 0.2 GCF_001656255.1 LXHH01 1700 1752 1752 8 3 40 1 Moraxella_catarrhalis_homd_HMT_833 GCA_001656455.1 HMT-833 N12 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis N12 26 1889361 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/656/455/GCA_001656455.1_ASM165645v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA297370 480 SAMN04122797 ASM165645v1 Contig Newbler v. 2.6 2015-09-29T14:05:24.620 Netherlands Nose 454 Drexel University College of Medicine 36.1x 95.78 99.12 0.27 99.98 0.22 GCF_001656455.1 LXHN01 1703 1755 1755 8 3 40 1 Moraxella_catarrhalis_homd_HMT_833 GCA_001656475.1 HMT-833 N1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis N1 22 1884914 41.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/656/475/GCA_001656475.1_ASM165647v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA297370 480 SAMN04122796 ASM165647v1 Contig Newbler v. 2.6 2015-09-29T14:03:31.727 Netherlands Nose 454 Drexel University College of Medicine 34.1x 95.85 99.45 0.34 99.99 0.15 GCF_001656475.1 LXHO01 1683 1734 1734 7 3 40 1 Moraxella_catarrhalis_homd_HMT_833 GCA_001657905.1 HMT-021 22-04 S5 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis 22-04 S5 74 1863804 39.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/657/905/GCA_001657905.1_ASM165790v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA320256 1343 SAMN04931587 ASM165790v1 Contig Velvet v. 1.2.07 2016-05-02T12:35:05.787 Brazil Oral cavity, infant (2 months of age) Illumina MiSeq State University of Campinas 10.0x 98.8 99.96 0.36 100 0 GCF_001657905.1 LXZW01 1796 1876 1876 41 3 35 1 Streptococcus_vestibularis_homd_HMT_021 GCA_001657915.1 HMT-021 22-06 S6 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis 22-06 S6 7 1882671 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/657/915/GCA_001657915.1_ASM165791v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA320256 1343 SAMN04931594 ASM165791v1 Scaffold Velvet v. 1.2.07 2016-05-02T12:37:05.847 Brazil Oral cavity, infant (2 months of age) Illumina MiSeq State University of Campinas 10.0x 98.8 99.96 0.36 100 0.04 GCF_001657915.1 LXZX01 1841 1926 1926 37 4 43 1 Streptococcus_vestibularis_homd_HMT_021 GCA_001659645.1 HMT-755 20-12 S2 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 20-12 S2 4 2177169 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/659/645/GCA_001659645.1_ASM165964v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA320256 1304 SAMN04931542 ASM165964v1 Contig Velvet v. 1.2.07 2016-05-02T11:41:04.857 Brazil missing Illumina MiSeq State University of Campinas 10.0x 96.13 99.9 0.15 100 0.04 GCF_001659645.1 LXMC01 1971 2054 2054 36 3 43 1 Streptococcus_salivarius_homd_HMT_755 GCA_001665955.1 HMT-060 EPI-003-04-2554_SCH2473622 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum EPI-003-04-2554_SCH2473622 85 2366960 55.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/665/955/GCA_001665955.1_ASM166595v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA305922 1834153 SAMN04696134 ASM166595v1 Contig SPAdes v. 3.1.1 2016-04-12T16:08:10.000 South Africa Unknown Illumina NextSeq 500 JCVI 188.6x 99.67 0.93 100 0.86 GCF_001665955.1 LZMN01 2137 2193 2193 6 3 46 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_001671545.1 HMT-659 R7ANS::ICEMcbSym1271 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-659 Mesorhizobium japonicum R7ANS 15 6508905 62.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/671/545/GCA_001671545.1_ASM167154v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium japonicum PRJNA325577 381 SAMN05241054 ASM167154v1 Contig SPAdes v. 3.8.0 2016-06-14T05:11:03.500 Australia:Perth conjugation and plant nodule Illumina HiSeq Curtin University 15.0x 87.91 99.92 0.51 100 0 GCF_001671545.1 LZTK01 6235 6350 6350 50 6 58 1 Mesorhizobium_japonicum_homd_HMT_659 GCA_001679005.1 HMT-098 CCUG 348 Named Cultivated Nasal (Abundance: High) HMT-098 Moraxella nonliquefaciens CCUG 348 37 2279879 42.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/005/GCA_001679005.1_ASM167900v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella nonliquefaciens PRJNA302716 478 SAMN04994741 ASM167900v1 Scaffold CLC NGS Cell v. 8.0 2016-05-13T03:16:02.000 Norway: Oslo nose swab Illumina MiSeq TAILORED-Treatment project 112.0x 99.99 96.85 0.62 100 0.05 GCF_001679005.1 LXTW01 2113 2168 2168 8 3 43 1 Moraxella_nonliquefaciens_homd_HMT_098 GCA_001679045.1 HMT-851 CCUG 12834 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus CCUG 12834 18 1827025 38.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/045/GCA_001679045.1_ASM167904v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA302716 726 SAMN05043237 ASM167904v1 Scaffold CLC NGS Cell v. 9 2016-05-19T13:12:07.000 United Kingdom: Newcastle Human sputum Illumina MiSeq TAILORED-Treatment project 135.0x 99.99 99.66 0 100 0 GCF_001679045.1 LYCK01 1703 1787 1787 27 6 50 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_001679075.1 HMT-833 CCUG 58286 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis CCUG 58286 13 1900421 41.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/075/GCA_001679075.1_ASM167907v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA302716 480 SAMN05213996 ASM167907v1 Scaffold CLC Genomics Workbench v. 9 2016-06-08T05:22:04.406 Sweden:Vasteras Human blood Illumina MiSeq TAILORED-Treatment project 156.0x 95.9 99.18 0.27 99.98 0.02 GCF_001679075.1 LZDK01 1708 1762 1762 6 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_001679105.1 HMT-833 CCUG 18283 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis CCUG 18283 24 1909123 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/105/GCA_001679105.1_ASM167910v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA302716 480 SAMN05213945 ASM167910v1 Scaffold CLC NGS Cell v. 9 2016-06-08T04:02:05.456 Sweden:Lund Human nasopharynx Illumina MiSeq TAILORED-Treatment project 93.5x 99.24 100 0.27 99.99 0 GCF_001679105.1 LZDJ01 1759 1816 1816 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_001679125.1 HMT-098 CCUG 47514 Named Cultivated Nasal (Abundance: High) HMT-098 Moraxella nonliquefaciens CCUG 47514 45 2112543 42.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/125/GCA_001679125.1_ASM167912v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella nonliquefaciens PRJNA302716 478 SAMN05214002 ASM167912v1 Scaffold CLC Genomics Workbench v. 9 2016-06-08T05:55:04.906 Sweden: Vastra Gotaland, Gothe Human cornea Illumina MiSeq TAILORED-Treatment project 109.0x 98.22 96.58 0.41 99.99 0 GCF_001679125.1 LZDM01 1936 1989 1989 8 3 41 1 Moraxella_nonliquefaciens_homd_HMT_098 GCA_001679135.1 HMT-851 CCUG 24149 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus CCUG 24149 31 1941809 38.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/135/GCA_001679135.1_ASM167913v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_M PRJNA302716 726 SAMN05214003 ASM167913v1 Contig CLC NGS Cell v. 9.0 2016-06-08T05:59:04.996 Sweden: Boden Vagina Illumina MiSeq TAILORED-Treatment project 114.0x 95.43 99.66 0 100 0 GCF_001679135.1 LZDL01 1822 1928 1928 51 3 51 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_001679155.1 HMT-098 CCUG 60284 Named Cultivated Nasal (Abundance: High) HMT-098 Moraxella nonliquefaciens CCUG 60284 43 2194559 42.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/155/GCA_001679155.1_ASM167915v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella nonliquefaciens PRJNA302716 478 SAMN05214262 ASM167915v1 Scaffold CLC Genomics Workbench v. 9 2016-06-08T06:14:04.590 Sweden: Vastra Gotaland, Gothe Human cornea Illumina MiSeq TAILORED-Treatment project 164.0x 98.17 96.85 0.41 100 0.01 GCF_001679155.1 LZDN01 2024 2082 2082 12 3 42 1 Moraxella_nonliquefaciens_homd_HMT_098 GCA_001679175.1 HMT-711 CCUG 350 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-711 Moraxella osloensis CCUG 350 76 2594948 43.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/175/GCA_001679175.1_ASM167917v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella_A;s__Moraxella_A osloensis PRJNA302716 34062 SAMN05214315 ASM167917v1 Scaffold GS Genomics Workbench v. 9 2016-06-08T07:37:02.930 USA Human cerebrospinal fluid Illumina MiSeq TAILORED-Treatment project 201.0x 99.93 99.71 0 100 0.06 GCF_001679175.1 LZDO01 2270 2413 2413 97 4 41 1 Moraxella_osloensis_homd_HMT_711 GCA_001679305.1 HMT-535 CCUG 628 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius CCUG 628 21 1856412 37.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/305/GCA_001679305.1_ASM167930v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA302716 197575 SAMN05219235 ASM167930v1 Scaffold CLC NGS Cell v. 9.0 2016-06-09T09:34:03.690 USA: New York Unknown Illumina MiSeq TAILORED-Treatment project 182.0x 97.72 99.77 0 100 0.22 GCF_001679305.1 LZPG01 1841 1927 1927 36 4 45 1 Haemophilus_aegyptius_homd_HMT_535 GCA_001679325.1 HMT-718 CCUG 62654 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae CCUG 62654 31 2129377 39.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/325/GCA_001679325.1_ASM167932v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AD PRJNA302716 729 SAMN05219282 ASM167932v1 Scaffold CLC NGS Cell v. 9.0 2016-06-09T09:34:38.976 Denmark: Arhus urethra Illumina MiSeq TAILORED-Treatment project 89.0x 95.4 99.89 0 100 0.01 GCF_001679325.1 LZMX01 2000 2079 2079 26 4 48 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001679335.1 HMT-535 CCUG 26840 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius CCUG 26840 32 1926181 38.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/335/GCA_001679335.1_ASM167933v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_I PRJNA302716 197575 SAMN05219236 ASM167933v1 Scaffold CLC NGS Cell v. 9.0 2016-06-09T09:34:06.220 USA: Maryland Unknown Illumina MiSeq TAILORED-Treatment project 109.0x 99.99 99.56 0 99.99 0.04 GCF_001679335.1 LZPH01 1917 2013 2013 43 5 47 1 Haemophilus_aegyptius_homd_HMT_535 GCA_001679345.1 HMT-833 CCUG 57283 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis CCUG 57283 10 1830335 41.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/345/GCA_001679345.1_ASM167934v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA302716 480 SAMN05219449 ASM167934v1 Scaffold CLC Genomics Workbench v. 9 2016-06-09T09:53:02.120 Sweden: Vastra Gotaland, Gothe sputum sample Illumina MiSeq TAILORED-Treatment project 139.0x 99.23 99.45 0.33 100 0.01 GCF_001679345.1 LZYD01 1651 1708 1708 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_001679405.1 HMT-718 CCUG 58848 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae CCUG 58848 18 2148389 39.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/405/GCA_001679405.1_ASM167940v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA302716 729 SAMN05219234 ASM167940v1 Scaffold CLC NGS Cell v. 9.0 2016-06-09T05:45:07.383 Sweden: Lund gallbladder Illumina MiSeq TAILORED-Treatment project 235.0x 96.33 99.77 0 100 0.08 GCF_001679405.1 LZMW01 2016 2098 2098 28 6 47 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001679445.1 HMT-851 CCUG 39154 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus CCUG 39154 12 1880185 38.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/445/GCA_001679445.1_ASM167944v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_M PRJNA302716 726 SAMN05225441 ASM167944v1 Scaffold CLC NGS Cell v. 9.0 2016-06-10T08:51:04.520 Sweden: Gothenburg eye Illumina MiSeq TAILORED-Treatment project 113.0x 95.43 99.66 0.23 100 0 GCF_001679445.1 LZOY01 1770 1857 1857 32 5 49 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_001679455.1 HMT-718 CCUG 62655 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae CCUG 62655 18 2125877 39.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/455/GCA_001679455.1_ASM167945v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AD PRJNA302716 729 SAMN05219283 ASM167945v1 Scaffold CLC NGS Cell v. 9.0 2016-06-09T09:34:41.110 Denmark: Arhus Unknown Illumina MiSeq TAILORED-Treatment project 169.0x 95.33 99.89 0 100 0.01 GCF_001679455.1 LZMY01 2025 2108 2108 27 6 49 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001679485.1 HMT-718 CCUG 60358 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae CCUG 60358 20 2091064 39.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/485/GCA_001679485.1_ASM167948v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp001679485 PRJNA302716 1859695 SAMN05225442 ASM167948v1 Scaffold CLC NGS Cell v. 9.0 2016-06-10T08:55:04.456 Sweden: Vastra Gotaland, Gothe urine Illumina MiSeq TAILORED-Treatment project 170.0x 99.89 0.23 100 1.09 GCF_001679485.1 LZOZ01 2022 2109 2109 30 7 49 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001679495.1 HMT-036 CCUG 66565 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 CCUG 66565 18 1926945 38.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/495/GCA_001679495.1_ASM167949v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA302716 1859694 SAMN05225439 ASM167949v1 Contig CLC NGS Cell v. 9.0 2016-06-10T08:40:07.243 Sweden: Gothenburg sputum Illumina MiSeq TAILORED-Treatment project 77.0x 99.49 0.19 100 0 GCF_001679495.1 LZOX01 1835 1923 1923 29 6 52 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_001680765.1 HMT-545 ATCC 19415 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus ATCC 19415 32 2268672 42.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/680/765/GCA_001680765.1_ASM168076v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA327278 732 SAMN05327945 ASM168076v1 Scaffold Microbial Genome Assembler Pipeline v. 1.0 2016-06-30T01:29:50.446 United Kingdom:London blood Illumina HiSeq Menzies School of Health Research 77.0x 99.99 99.84 0.02 100 0.07 GCF_001680765.1 MAQF01 2118 2226 2226 57 4 46 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_001680775.1 HMT-718 ATCC 9796 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae ATCC 9796 12 2120924 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/680/775/GCA_001680775.1_ASM168077v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA327273 729 SAMN05327867 ASM168077v1 Scaffold Microbial Genome Assembler Pipeline v. 1.0 2016-06-30T01:29:07.096 Unknown blood Illumina HiSeq Menzies School of Health Research 113.0x 95.91 99.89 0 100 0 GCF_001680775.1 MAQD01 2012 2092 2092 27 4 48 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001680805.1 HMT-545 ATCC 7901 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus ATCC 7901 19 2364377 42.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/680/805/GCA_001680805.1_ASM168080v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA327277 732 SAMN05327896 ASM168080v1 Scaffold Microbial Genome Assembler Pipeline v. 1.0 2016-06-30T01:29:31.007 USA Spinal fluid Illumina HiSeq Menzies School of Health Research 81.0x 96.04 99.89 0.48 100 0.07 GCF_001680805.1 MAQE01 2157 2266 2266 55 4 49 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_001683095.1 HMT-824 Parent1 Named Cultivated Pathogen (Abundance: Scarce) HMT-824 Bacillus anthracis Parent1 1 5228660 35.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/683/095/GCA_001683095.1_ASM168309v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis PRJNA295544 1392 SAMN04093743 ASM168309v1 Complete Genome IDBA UD v. 1.0.9 2015-09-17T10:34:34.547 USA not applicable Illumina HiSeq University of Illinois at Urbana-Champaign 600.0x 99.97 99.23 0.15 100 0.22 GCF_001683095.1 5461 5711 5711 121 33 95 1 Bacillus_anthracis_homd_HMT_824 GCA_001683135.1 HMT-824 PR01 Named Cultivated Pathogen (Abundance: Scarce) HMT-824 Bacillus anthracis PR01 1 5228656 35.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/683/135/GCA_001683135.1_ASM168313v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis PRJNA295544 1392 SAMN04075676 ASM168313v1 Complete Genome IDBA UD v. 1.0.9 2015-09-14T11:08:23.243 USA not applicable Illumina HiSeq University of Illinois at Urbana-Champaign 30.0x 99.97 99.23 0.15 100 0.22 GCF_001683135.1 5461 5711 5711 121 33 95 1 Bacillus_anthracis_homd_HMT_824 GCA_001683335.1 HMT-126 W7667 Unnamed Cultivated Oral (Abundance: Medium) HMT-126 Selenomonas sp. HMT-126 W7667 1 2886041 57.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/683/335/GCA_001683335.1_ASM168333v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda sp001683335 PRJNA282954 712528 SAMN03897727 ASM168333v1 Chromosome Newbler v. rd454_mapasm_v3.0_prerel_03112014 2015-07-23T20:18:24.000 United Kingdom: London Subgingival plaque Illumina MiSeq The Forsyth Institute 34.0x 99.1 0.4 99.95 0.92 GCF_001683335.1 2625 2725 2725 32 12 56 0 GCA_001683355.1 HMT-885 W2052 Named Cultivated Oral (Abundance: Medium) HMT-885 Prevotella scopos W2052 3 3303745 40.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/683/355/GCA_001683355.1_ASM168335v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella scopos PRJNA282954 1236518 SAMN03897722 ASM168335v1 Chromosome SPAdes v. 3.8.0 2015-07-23T20:18:23.000 United Kingdom: Cardiff Dental implant Illumina MiSeq The Forsyth Institute 99.97 99.32 0.17 99.85 0.14 GCF_001683355.1 2634 2711 2711 14 12 50 1 Prevotella_scopos_homd_HMT_885 GCA_001683375.1 HMT-707 W10853 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis W10853 3 2013158 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/683/375/GCA_001683375.1_ASM168337v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA282954 712624 SAMN03897726 ASM168337v1 Chromosome SPAdes v. 3.8.0 2015-07-23T20:18:24.000 United Kingdom: London Subgingival plaque, gingival sulcus Illumina MiSeq The Forsyth Institute 23.0x 99.82 0.4 100 0.1 GCF_001683375.1 1902 2005 2005 39 12 51 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_001683375.1 HMT-707 W10853 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis W10853 3 2013158 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/683/375/GCA_001683375.1_ASM168337v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA282954 712624 SAMN03897726 ASM168337v1 Chromosome SPAdes v. 3.8.0 2015-07-23T20:18:24.000 United Kingdom: London Subgingival plaque, gingival sulcus Illumina MiSeq The Forsyth Institute 23.0x 99.82 0.4 100 0.1 GCF_001683375.1 1902 2005 2005 39 12 51 1 Streptococcus_oralis_HMT_071_398_707 GCA_001688645.2 HMT-895 YL2 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-895 Bifidobacterium animalis YL2 1 2027369 60.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/688/645/GCA_001688645.2_ASM168864v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis PRJNA317592 302912 SAMN04621611 ASM168864v2 Complete Genome HGAP v. 3 2016-04-06T15:45:03.000 Switzerland: Bern PacBio University of Bern 98.97 100 0.44 99.98 0.38 GCF_001688645.2 1631 1707 1707 10 12 53 1 Bifidobacterium_animalis_homd_HMT_895 GCA_001688765.2 HMT-963 YL44 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-963 Akkermansia muciniphila YL44 1 2745278 55.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/688/765/GCA_001688765.2_ASM168876v2 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila PRJNA317592 239935 SAMN04621615 ASM168876v2 Complete Genome de novo assembly with Celera Assembler, HGAP v. 2 assembly 2016-04-06T15:45:03.000 Switzerland: Bern PacBio University of Bern 98.91 97.96 0 100 0.27 GCF_001688765.2 2282 2352 2352 6 9 54 1 Akkermansia_muciniphila_homd_HMT_963 GCA_001690155.1 HMT-531 IDH781 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans IDH781 1 2291252 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/690/155/GCA_001690155.1_ASM169015v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA328135 714 SAMN05363964 ASM169015v1 Complete Genome HGAP v. 2.0 2016-07-07T12:20:02.683 Denmark: Aarhus plaque sample PacBio Rutgers School of Dental Medicine 283.3x 97.83 99.89 0.23 100 0.08 GCF_001690155.1 2157 2361 2361 129 19 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_001692965.1 HMT-552 UCD-PD2 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum UCD-PD2 51 2667287 63.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/692/965/GCA_001692965.1_ASM169296v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA323590 33010 SAMN05181546 ASM169296v1 Contig A5-miseq v. 20150522 2016-05-27T13:27:02.930 USA: Oakland, CA anal gland Illumina MiSeq UC Davis 76.0x 96.35 100 0 100 0.27 GCF_001692965.1 LYSN01 2410 2494 2494 30 5 48 1 Cutibacterium_avidum_homd_HMT_552 GCA_001697105.1 HMT-669 DE8669 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis DE8669 1 2230103 51.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/105/GCA_001697105.1_ASM169710v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA291330 487 SAMN03944749 ASM169710v1 Complete Genome Celera assembler v. 6.2 2015-07-30T04:20:28.107 Germany nasopharynx 454; Illumina JLU 97.29 99.75 0.19 99.99 0.01 GCF_001697105.1 2060 2152 2152 20 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697125.1 HMT-669 DE10444 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis DE10444 1 2170619 51.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/125/GCA_001697125.1_ASM169712v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA291329 487 SAMN03944748 ASM169712v1 Complete Genome Celera assembler v. 6.2 2015-07-30T04:19:27.997 Germany nasopharynx 454; Illumina JLU 42.0x 97.4 99.75 0.19 99.99 0 GCF_001697125.1 2014 2126 2126 40 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697165.1 HMT-669 DE8555 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis DE8555 1 2207932 51.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/165/GCA_001697165.1_ASM169716v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA291331 487 SAMN03944750 ASM169716v1 Complete Genome Celera assembler v. 6.2 2015-07-30T04:22:25.980 Germany nasopharynx 454; Illumina JLU 97.33 99.83 0.21 100 0 GCF_001697165.1 2065 2157 2157 20 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697205.1 HMT-669 WUE2121 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis WUE2121 1 2206847 51.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/205/GCA_001697205.1_ASM169720v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA291332 487 SAMN03944751 ASM169720v1 Complete Genome Celera assembler v. 6.2 2015-07-30T04:23:21.753 Germany nasopharynx 454; Illumina JLU 97.33 99.83 0.21 99.99 0 GCF_001697205.1 2068 2160 2160 20 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697265.1 HMT-468 KCTC 3135 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-468 Bacillus subtilis KCTC 3135 1 4211343 43.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/265/GCA_001697265.1_ASM169726v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis PRJNA302835 135461 SAMN04281244 ASM169726v1 Complete Genome SPAdes v. 3.6.0 2015-11-20T02:49:13.000 missing missing Illumina (Miseq & Hiseq) Korea Research Institute of Standards and Science (KRISS) 2485.0x 99.99 99.81 0.25 100 0.05 GCF_001697265.1 4212 4430 4430 100 30 87 1 Bacillus_subtilis_homd_HMT_468 GCA_001697305.1 HMT-669 M22718 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22718 1 2173408 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/305/GCA_001697305.1_ASM169730v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883376 ASM169730v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.260 Mauritius missing PacBio Centers for Disease Control and Prevention 137.0x 97.28 99.83 0.21 100 0.01 GCF_001697305.1 2012 2103 2103 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697325.1 HMT-669 M12752 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M12752 1 2173879 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/325/GCA_001697325.1_ASM169732v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883372 ASM169732v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Mali missing PacBio Centers for Disease Control and Prevention 85.6x 97.28 99.83 0.21 100 0.01 GCF_001697325.1 2011 2102 2102 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697345.1 HMT-669 M22819 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22819 1 2173686 51.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/345/GCA_001697345.1_ASM169734v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883393 ASM169734v1 Complete Genome HGAP v. 3 2016-04-21T16:08:06.000 Benin missing PacBio Centers for Disease Control and Prevention 262.9x 97.4 99.75 0.19 99.99 0 GCF_001697345.1 2040 2158 2158 45 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697365.1 HMT-669 M22809 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22809 1 2182171 51.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/365/GCA_001697365.1_ASM169736v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883391 ASM169736v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Benin missing PacBio Centers for Disease Control and Prevention 159.1x 97.38 99.75 0.19 99.99 0 GCF_001697365.1 2039 2156 2156 44 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697385.1 HMT-669 M09293 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M09293 1 2161510 51.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/385/GCA_001697385.1_ASM169738v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883371 ASM169738v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 202.8x 97.31 99.83 0.21 100 0.01 GCF_001697385.1 2002 2093 2093 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697405.1 HMT-669 M22189 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22189 1 2172699 51.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/405/GCA_001697405.1_ASM169740v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883374 ASM169740v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Mali missing PacBio Centers for Disease Control and Prevention 336.2x 97.28 99.83 0.42 100 0.01 GCF_001697405.1 2007 2098 2098 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697425.1 HMT-669 M07149 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M07149 1 2173513 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/425/GCA_001697425.1_ASM169742v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883361 ASM169742v1 Complete Genome HGAP v. 3 2016-04-21T16:08:04.000 Saudi Arabia missing PacBio Centers for Disease Control and Prevention 196.9x 97.28 99.83 0.21 99.99 0.01 GCF_001697425.1 2014 2105 2105 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697465.1 HMT-669 M08001 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M08001 1 2162199 51.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/465/GCA_001697465.1_ASM169746v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883369 ASM169746v1 Complete Genome HGAP v. 3 2016-04-21T16:08:04.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 106.0x 97.31 99.83 0.21 100 0.01 GCF_001697465.1 1997 2088 2088 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697485.1 HMT-669 M22748 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22748 1 2157503 51.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/485/GCA_001697485.1_ASM169748v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883381 ASM169748v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Central African Republic missing PacBio Centers for Disease Control and Prevention 251.1x 97.28 99.83 0.21 99.99 0.01 GCF_001697485.1 1993 2084 2084 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697545.1 HMT-669 M22769 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22769 1 2168495 51.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/545/GCA_001697545.1_ASM169754v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883384 ASM169754v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Niger missing PacBio Centers for Disease Control and Prevention 160.5x 97.28 99.83 0.21 99.99 0.01 GCF_001697545.1 2002 2093 2093 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697565.1 HMT-669 M22745 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22745 1 2163399 51.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/565/GCA_001697565.1_ASM169756v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883379 ASM169756v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 153.9x 97.33 99.62 0.21 100 0.04 GCF_001697565.1 2000 2091 2091 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697585.1 HMT-669 M24730 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M24730 1 2175362 51.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/585/GCA_001697585.1_ASM169758v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883405 ASM169758v1 Complete Genome HGAP v. 3 2016-04-21T16:08:06.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 154.2x 97.3 99.83 0.21 100 0.01 GCF_001697585.1 2014 2105 2105 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697605.1 HMT-669 M22801 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22801 1 2172426 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/605/GCA_001697605.1_ASM169760v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883389 ASM169760v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Djibouti missing PacBio Centers for Disease Control and Prevention 207.9x 97.28 99.83 0.42 99.99 0.01 GCF_001697605.1 2013 2104 2104 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697625.1 HMT-669 M22804 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22804 1 2174791 51.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/625/GCA_001697625.1_ASM169762v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883390 ASM169762v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Niger missing PacBio Centers for Disease Control and Prevention 241.4x 97.38 99.65 0.19 99.99 0 GCF_001697625.1 2035 2142 2142 34 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697645.1 HMT-669 M25438 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M25438 1 2171975 51.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/645/GCA_001697645.1_ASM169764v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883437 ASM169764v1 Complete Genome HGAP v. 3 2016-04-21T16:08:07.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 143.0x 97.29 99.83 0.23 100 0.01 GCF_001697645.1 2011 2102 2102 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697665.1 HMT-669 M23413 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M23413 1 2173723 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/665/GCA_001697665.1_ASM169766v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883396 ASM169766v1 Complete Genome HGAP v. 3 2016-04-21T16:08:06.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 224.4x 97.29 99.83 0.21 100 0.01 GCF_001697665.1 2012 2103 2103 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697685.1 HMT-669 M22722 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22722 1 2172888 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/685/GCA_001697685.1_ASM169768v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883377 ASM169768v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Algeria missing PacBio Centers for Disease Control and Prevention 95.9x 97.28 99.62 0.21 100 0.01 GCF_001697685.1 2008 2099 2099 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697705.1 HMT-669 M25070 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M25070 1 2168001 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/705/GCA_001697705.1_ASM169770v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883408 ASM169770v1 Complete Genome HGAP v. 3 2016-04-21T16:08:06.000 Mali missing PacBio Centers for Disease Control and Prevention 95.8x 97.29 99.83 0.21 99.99 0.01 GCF_001697705.1 2005 2096 2096 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697725.1 HMT-669 M09261 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M09261 1 2154341 51.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/725/GCA_001697725.1_ASM169772v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883370 ASM169772v1 Complete Genome HGAP v. 3 2016-04-21T16:08:04.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 144.6x 97.31 99.83 0.21 99.99 0.01 GCF_001697725.1 1988 2079 2079 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697745.1 HMT-669 M25462 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M25462 1 2174042 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/745/GCA_001697745.1_ASM169774v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883441 ASM169774v1 Complete Genome HGAP v. 3 2016-04-21T16:08:08.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 122.0x 97.3 99.83 0.21 100 0.01 GCF_001697745.1 2008 2099 2099 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697765.1 HMT-669 M27559 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M27559 1 2173745 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/765/GCA_001697765.1_ASM169776v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883452 ASM169776v1 Complete Genome HGAP v. 3 2016-04-21T16:08:08.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 120.4x 97.3 99.83 0.42 99.99 0.04 GCF_001697765.1 2006 2097 2097 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697805.1 HMT-669 M22759 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22759 1 2168308 51.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/805/GCA_001697805.1_ASM169780v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883382 ASM169780v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Niger missing PacBio Centers for Disease Control and Prevention 163.0x 97.27 99.83 0.21 99.99 0.01 GCF_001697805.1 2002 2093 2093 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697825.1 HMT-669 M25087 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M25087 1 2167991 51.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/825/GCA_001697825.1_ASM169782v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883421 ASM169782v1 Complete Genome HGAP v. 3 2016-04-21T16:08:07.000 Mali missing PacBio Centers for Disease Control and Prevention 188.4x 97.29 99.83 0.21 100 0.01 GCF_001697825.1 2005 2096 2096 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697845.1 HMT-669 M22783 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22783 1 2180570 51.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/845/GCA_001697845.1_ASM169784v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883386 ASM169784v1 Complete Genome HGAP v. 3 2016-04-21T16:08:05.000 Niger missing PacBio Centers for Disease Control and Prevention 107.2x 97.37 99.75 0.19 99.99 0 GCF_001697845.1 2037 2154 2154 44 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697865.1 HMT-669 M22828 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22828 1 2172926 51.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/865/GCA_001697865.1_ASM169786v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883395 ASM169786v1 Complete Genome HGAP v. 3 2016-04-21T16:08:06.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 129.7x 97.4 99.75 0.19 99.99 0 GCF_001697865.1 2037 2154 2154 44 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697885.1 HMT-669 M25459 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M25459 1 2173115 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/885/GCA_001697885.1_ASM169788v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883440 ASM169788v1 Complete Genome HGAP v. 3 2016-04-21T16:08:08.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 123.9x 97.29 99.83 0.21 99.99 0.01 GCF_001697885.1 2006 2097 2097 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697925.1 HMT-669 M07161 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M07161 1 2169790 51.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/925/GCA_001697925.1_ASM169792v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883364 ASM169792v1 Complete Genome HGAP v. 3 2016-04-21T16:08:04.000 Mali missing PacBio Centers for Disease Control and Prevention 148.7x 97.3 99.62 0.42 100 0.04 GCF_001697925.1 2007 2098 2098 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697945.1 HMT-669 M25476 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M25476 1 2168191 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/945/GCA_001697945.1_ASM169794v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883451 ASM169794v1 Complete Genome HGAP v. 3 2016-04-21T16:08:08.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 151.9x 97.28 99.83 0.21 100 0.01 GCF_001697945.1 2008 2099 2099 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697965.1 HMT-669 M25456 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M25456 1 2173106 51.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/965/GCA_001697965.1_ASM169796v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883439 ASM169796v1 Complete Genome HGAP v. 3 2016-04-21T16:08:08.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 121.2x 97.29 99.83 0.21 99.99 0.01 GCF_001697965.1 2009 2100 2100 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001697985.1 HMT-669 M25419 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M25419 1 2189560 51.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/697/985/GCA_001697985.1_ASM169798v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883430 ASM169798v1 Complete Genome HGAP v. 3 2016-04-21T16:08:07.000 South Africa missing PacBio Centers for Disease Control and Prevention 232.3x 97.3 99.83 0.21 99.99 0 GCF_001697985.1 2033 2124 2124 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001698025.1 HMT-669 M22822 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22822 1 2173901 51.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/698/025/GCA_001698025.1_ASM169802v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883394 ASM169802v1 Complete Genome HGAP v. 3 2016-04-21T16:08:06.000 Togo missing PacBio Centers for Disease Control and Prevention 235.5x 97.39 99.56 0.19 99.99 0.02 GCF_001698025.1 2048 2165 2165 44 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_001698045.1 HMT-669 M07162 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M07162 1 2193742 51.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/698/045/GCA_001698045.1_ASM169804v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883365 ASM169804v1 Complete Genome HGAP v. 3 2016-04-21T16:08:04.000 Mali missing PacBio Centers for Disease Control and Prevention 124.5x 97.32 99.83 0.21 99.99 0.01 GCF_001698045.1 2043 2134 2134 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001698065.1 HMT-669 M08000 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M08000 1 2162376 51.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/698/065/GCA_001698065.1_ASM169806v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883368 ASM169806v1 Complete Genome HGAP v. 3 2016-04-21T16:08:04.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 125.8x 97.31 99.83 0.21 99.99 0.01 GCF_001698065.1 1994 2085 2085 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001698085.1 HMT-669 M24705 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M24705 1 2175832 51.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/698/085/GCA_001698085.1_ASM169808v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN04883402 ASM169808v1 Complete Genome HGAP v. 3 2016-04-21T16:08:06.000 Burkina Faso missing PacBio Centers for Disease Control and Prevention 144.1x 97.37 99.75 0.21 99.99 0 GCF_001698085.1 2036 2147 2147 38 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_001700755.2 HMT-114 DSM 20700 Named Cultivated Skin (Abundance: High) HMT-114 Cutibacterium granulosum DSM 20700 53 2165334 64.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/700/755/GCA_001700755.2_ASM170075v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium granulosum PRJNA203685 1160719 SAMN02798018 ASM170075v2 Contig RAPT v. 0.3.2 03-19-2021 2014-05-22T10:05:05.533 Illuminate HiSeq Umea University 100.0x 99.99 98.79 0 99.73 0.25 GCF_001700755.2 JNBU02 1809 1883 1883 21 4 48 1 Cutibacterium_granulosum_homd_HMT_114 GCA_001700965.1 HMT-037 2001 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-037 Stenotrophomonas nitritireducens 2001 1 4541729 63.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/700/965/GCA_001700965.1_ASM170096v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas nitritireducens_A PRJNA330867 83617 SAMN05428703 ASM170096v1 Complete Genome HGAP (Hierarchical Genome Assembly Process) v. v2 2016-07-21T21:13:05.120 Korea: Seoul Lake sediments PacBio Konkuk University 102.0x 85.43 99.86 2.01 100 0.89 GCF_001700965.1 3847 3954 3954 21 14 71 1 Stenotrophomonas_nitritireducens_homd_HMT_037 GCA_001703515.1 HMT-241 TMW 2.1564 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-241 Brochothrix thermosphacta TMW 2.1564 2 2578375 36.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/703/515/GCA_001703515.1_ASM170351v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta PRJNA336488 2756 SAMN05511621 ASM170351v1 Complete Genome Celera Assembler v. 1 2016-08-04T09:48:03.363 Germany poultry meat PacBio Technische Universitaet Muenchen 151.0x 99.03 99.45 0 99.93 0.22 GCF_001703515.1 2401 2564 2564 50 28 84 1 Brochothrix_thermosphacta_homd_HMT_241 GCA_001703535.1 HMT-241 TMW 2.1572 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-241 Brochothrix thermosphacta TMW 2.1572 2 2614544 36.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/703/535/GCA_001703535.1_ASM170353v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta PRJNA336488 2756 SAMN05511622 ASM170353v1 Complete Genome Celera Assembler v. 1 2016-08-04T09:48:03.540 Germany poultry meat PacBio Technische Universitaet Muenchen 257.0x 99.04 99.45 0 99.88 0.56 GCF_001703535.1 2448 2615 2615 52 28 86 1 Brochothrix_thermosphacta_homd_HMT_241 GCA_001703615.1 HMT-686 AD01 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans AD01 37 2066006 36.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/703/615/GCA_001703615.1_ASM170361v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA288626 1309 SAMN03835255 ASM170361v1 Contig CLC NGS Cell v. 7.0.4 2015-07-01T03:26:03.000 Italy: Rome tooth Illumina HiSeq University of Camerino 110.0x 99.3 100 0.19 100 0.26 GCF_001703615.1 LGAC01 1963 2038 2038 29 3 42 1 Streptococcus_mutans_homd_HMT_686 GCA_001708445.1 HMT-612 L321 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-612 Pseudomonas fluorescens L321 1 6641144 60.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/708/445/GCA_001708445.1_ASM170844v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E fluorescens_AN PRJNA320923 294 SAMN04992557 ASM170844v1 Complete Genome SPAdes v. 2.4 2016-05-11T17:23:05.000 Ireland:Carlow, Oakpark Interior of surface sterilised leaf tissue Illumina Institute of Technology Carlow 88.11 99.93 0.18 100 1.16 GCF_001708445.1 5939 6075 6075 73 3 59 1 Pseudomonas_fluorescens_homd_HMT_612 GCA_001714705.1 HMT-552 DPC 6544 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum DPC 6544 1 2729848 63.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/714/705/GCA_001714705.1_ASM171470v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA339124 33010 SAMN05579890 ASM171470v1 Complete Genome INVIEW DE NOVO GENOME 2.0 v. MAR-2015 2016-08-16T11:00:04.726 Ireland infant fecal swab PacBio University College Cork 287.8x 95.98 99.34 0.66 100 1.51 GCF_001714705.1 2462 2544 2544 24 9 48 1 Cutibacterium_avidum_homd_HMT_552 GCA_001714745.1 HMT-819 BS15 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-819 Lactobacillus johnsonii BS15 2 2159316 34.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/714/745/GCA_001714745.1_ASM171474v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus sp945980025 PRJNA317663 33959 SAMN04631277 ASM171474v1 Complete Genome HGAP v. 2.3 2016-04-10T05:18:04.000 China: Hongyuan Prairie, Aba A PacBio Sichuan Agriculture University 265.0x 96.78 98.45 0 99.99 0.83 GCF_001714745.1 2076 2228 2228 52 21 78 1 Lactobacillus_johnsonii_homd_HMT_819 GCA_001715655.1 HMT-241 DSM 20171 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-241 Brochothrix thermosphacta DSM 20171 41 2494302 36.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/715/655/GCA_001715655.1_ASM171565v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta PRJNA338887 1121126 SAMN05567448 ASM171565v1 Scaffold SPAdes v. 3.5 2016-08-12T01:50:06.886 not applicable pork sausage Illumina MiSeq CSIRO Agriculture and Food; Food Safety and Stability Group 80.0x 99.92 99.45 0 99.91 0.2 GCF_001715655.1 MDLK01 2408 2551 2551 50 10 82 1 Brochothrix_thermosphacta_homd_HMT_241 GCA_001715725.1 HMT-241 Bth-7810 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-241 Brochothrix thermosphacta Bth-7810 22 2471990 36.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/715/725/GCA_001715725.1_ASM171572v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta PRJNA338887 2756 SAMN05567455 ASM171572v1 Contig SPAdes v. 3.5 2016-08-12T01:50:07.487 Australia: Victoria aerobically stored beef Illumina MiSeq CSIRO Agriculture and Food; Food Safety and Stability Group 80.0x 99.24 99.45 0 99.73 0.23 GCF_001715725.1 MDLP01 2334 2477 2477 50 12 80 1 Brochothrix_thermosphacta_homd_HMT_241 GCA_001717505.1 HMT-736 F0677 Named Cultivated Oral (Abundance: Medium) HMT-736 Dialister pneumosintes F0677 1 1274073 35.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/717/505/GCA_001717505.1_ASM171750v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Allisonella;s__Allisonella pneumosinta PRJNA282954 39950 SAMN05413926 ASM171750v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-07-18T13:01:08.233 USA: Boston, MA Supragingival dental plaque PacBio The Forsyth Institute 230.0x 96.11 0 99.21 0.47 GCF_001717505.1 1198 1285 1285 17 16 53 1 Dialister_pneumosintes_homd_HMT_736 GCA_001717525.2 HMT-286 W11667 Named Cultivated Oral (Abundance: Medium) HMT-286 Tannerella serpentiformis W11667 1 2973544 56.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/717/525/GCA_001717525.2_ASM171752v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella serpentiformis PRJNA282954 712710 SAMN05413928 ASM171752v2 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-07-18T13:01:08.560 United Kingdom: London subgingival dental plaque PacBio The Forsyth Institute 254.0x 99.45 0.19 99.75 0.08 GCF_001717525.2 2483 2558 2558 22 6 46 1 Tannerella_serpentiformis_homd_HMT_286 GCA_001717545.1 HMT-439 W11661 Unnamed Cultivated Oral (Abundance: Scarce) HMT-439 Anaerolineae [G1] bacterium HMT-439 W11661 1 2945494 54.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/717/545/GCA_001717545.1_ASM171754v1 d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Flexilinea;s__Flexilinea sp001717545 PRJNA282954 1889813 SAMN05505093 ASM171754v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-08-02T12:06:24.936 United Kingdom: London subgingival dental plaque PacBio The Forsyth Institute 129.0x 91.82 3.64 99.89 0.92 GCF_001717545.1 2536 2603 2603 10 6 50 1 Anaerolineae__G1__bacterium_HMT_439_homd_HMT_439 GCA_001717565.1 HMT-193 F0672 Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum F0672 2 2649207 59.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/717/565/GCA_001717565.1_ASM171756v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJNA282954 2559073 SAMN05413927 ASM171756v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-07-18T13:01:08.400 USA: Boston, MA Tongue dorsum PacBio The Forsyth Institute 182.0x 99.95 100 0 99.99 0.27 GCF_001717565.1 2592 2673 2673 24 9 47 1 Cutibacterium_modestum_homd_HMT_193 GCA_001717585.1 HMT-920 W5150 Unnamed Cultivated Oral (Abundance: Low) HMT-920 Selenomonas sp. HMT-920 W5150 2 2440121 55.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/717/585/GCA_001717585.1_ASM171758v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda sp001717585 PRJNA282954 1884263 SAMN05420587 ASM171758v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-07-20T12:25:10.143 United Kingdom: London Periodontal pocket PacBio The Forsyth Institute 138.0x 99.56 0.23 99.82 0.33 GCF_001717585.1 2280 2369 2369 18 12 58 1 GCA_001718835.1 HMT-571 MSMB1184WGS Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-571 Burkholderia cepacia MSMB1184WGS 3 8003631 66.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/718/835/GCA_001718835.1_ASM171883v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia cepacia_F PRJNA279182 292 SAMN03449447 ASM171883v1 Complete Genome HGAP v. 2.0 2015-03-26T20:14:37.787 Australia: Northern Territory soil PacBio Northern Arizona University 50.0x 93.97 99.76 1.24 100 0.19 GCF_001718835.1 7040 7199 7199 64 18 76 1 Burkholderia_cepacia_homd_HMT_571 GCA_001721925.1 HMT-749 LRB Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-749 Lacticaseibacillus rhamnosus LRB 1 2934954 46.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/721/925/GCA_001721925.1_ASM172192v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus PRJNA337919 47715 SAMN05513711 ASM172192v1 Complete Genome SMRT v. 2.3.0_HGAP3_May132016 2016-08-05T10:05:03.250 USA: Kansas milk tooth PacBio KUMC 16.1x 97.56 99.35 0 99.38 0.99 GCF_001721925.1 2880 2986 2986 31 15 59 1 Lacticaseibacillus_rhamnosus_homd_HMT_749 GCA_001722255.1 HMT-047 ICIS 53 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum ICIS 53 41 2460257 58.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/722/255/GCA_001722255.1_ASM172225v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA339674 43765 SAMN05601680 ASM172225v1 Contig SPAdes v. 3.9.0 2016-08-22T04:45:03.277 Russia healthy female urogenital tract Illumina MiSeq Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences 100.0x 94.8 100 0 100 0 GCF_001722255.1 MIFV01 2126 2200 2200 13 7 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001725695.1 HMT-185 na Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-185 Microbacterium ginsengisoli na 127 2638424 70.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/725/695/GCA_001725695.1_ASM172569v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium ginsengisoli PRJNA279279 1660116 SAMN03652503 ASM172569v1 Scaffold idba_ud v. 1.1 2015-05-11T15:09:33.000 South Africa: University of Ca Thiocyanate bioreactor Illumina HiSeq2000 Banfield Lab, University of California, Berkeley 20.5x 94.71 1.25 95.38 1.05 GCF_001725695.1 MEGA01 2530 2585 2585 7 0 47 1 Microbacterium_ginsengisoli_homd_HMT_185 GCA_001726065.1 HMT-614 M5 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-614 Lysinibacillus fusiformis M5 3 4892467 37.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/726/065/GCA_001726065.1_ASM172606v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus;s__Lysinibacillus fusiformis PRJNA340959 28031 SAMN05715906 ASM172606v1 Scaffold CLC Genomics Workbench Tool v. 8.0.2; SPAdes v. 3.1.1 2016-08-30T08:50:05.786 Mexico:Tepoztlan soil Illumina MiSeq Seqomics Ltd 74.0x 95.94 99.34 0.99 100 0.08 GCF_001726065.1 MECQ01 4772 4962 4962 92 22 75 1 Lysinibacillus_fusiformis_homd_HMT_614 GCA_001746855.1 HMT-178 HKU8 Named Cultivated Oral (Abundance: Low) HMT-178 Schaalia hongkongensis HKU8 1 2141493 71.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/746/855/GCA_001746855.1_ASM174685v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia hongkongensis PRJNA343394 178339 SAMN05786934 ASM174685v1 Chromosome soap v. 3 2016-09-18T22:44:03.566 China: Shijiazhuang Illumina HebeiProvincialInstitute 230.0x 66.19 0.47 70.51 0.12 GCF_001746855.1 1814 1867 1867 6 2 45 0 Schaalia_hongkongensis_homd_HMT_178 GCA_001747495.1 HMT-422 NRS-1 Named NVP Uncultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-422 Cloacibacterium normanense NRS-1 82 2727353 33.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/747/495/GCA_001747495.1_ASM174749v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Cloacibacterium;s__Cloacibacterium normanense PRJNA342010 237258 SAMN05731713 ASM174749v1 Contig SPAdes v. 3.7.1 2016-09-06T12:13:02.466 USA: Norman, OK Untreated municipal wastewater Illumina HiSeq The Jackson Laboratory 494.0x 99.99 100 0.25 99.97 0.07 GCF_001747495.1 MKGI01 2485 2557 2557 30 3 38 1 Cloacibacterium_normanense_homd_HMT_422 GCA_001750825.1 HMT-669 331401 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 331401 1 2191116 51.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/750/825/GCA_001750825.1_ASM175082v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA294349 487 SAMN04023208 ASM175082v1 Complete Genome SMRT Analysis pipeline v. v2.3.0 2015-08-31T23:22:08.000 China: Zhejiang province blood PacBio; Illumina HiSeq National Institute for Communicable Disease Control and Prevention, Chinese CDC 500.0x 98.98 99.51 0.21 99.93 0 GCF_001750825.1 2076 2185 2185 37 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_001806915.1 HMT-534 HMSC30F09 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens HMSC30F09 35 1927473 37.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/806/915/GCA_001806915.1_ASM180691v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJNA269840 1581071 SAMN03436228 ASM180691v1 Scaffold Velvet v. 1.1.06 2015-03-20T18:05:08.610 respiratory Illumina The Genome Institute at Washington University 258.0x 99.45 0.55 99.71 0.01 GCF_001806915.1 LWOQ01 1851 1899 1899 29 3 15 1 Granulicatella_adiacens_homd_HMT_534 GCA_001806975.1 HMT-312 HMSC10H05 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-312 Aerococcus viridans HMSC10H05 71 1892427 37.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/806/975/GCA_001806975.1_ASM180697v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;s__Aerococcus viridans_B PRJNA269853 1581084 SAMN03604111 ASM180697v1 Scaffold Velvet v. 1.1.04 2015-05-05T17:05:03.667 urinary tract Illumina The Genome Institute at Washington University 339.0x 98.9 0.57 99.91 0.11 GCF_001806975.1 LTZN01 1720 1794 1794 34 4 35 1 Aerococcus_viridans_homd_HMT_312 GCA_001807045.1 HMT-031 HMSC11H10 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC11H10 20 2433278 58.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/045/GCA_001807045.1_ASM180704v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA269859 1581090 SAMN03287013 ASM180704v1 Scaffold Velvet v. 1.1.04 2015-01-16T11:05:08.460 urinary tract Illumina The Genome Institute at Washington University 209.0x 100 0 100 0.06 GCF_001807045.1 LTZQ01 2110 2181 2181 14 3 53 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_001807075.1 HMT-047 HMSC14B06 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC14B06 55 2562236 60.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/075/GCA_001807075.1_ASM180707v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA269867 1581098 SAMN03433344 ASM180707v1 Scaffold Velvet v. 1.1.04 2015-03-19T08:05:23.920 urinary tract Illumina The Genome Institute at Washington University 184.0x 92.26 0 96.12 0.33 GCF_001807075.1 LWON01 2185 2261 2261 20 4 51 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001807105.1 HMT-047 HMSC14H10 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC14H10 48 2490969 58.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/105/GCA_001807105.1_ASM180710v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA269872 1581103 SAMN03287019 ASM180710v1 Scaffold Velvet v. 1.1.04 2015-01-16T11:05:08.727 urinary tract Illumina The Genome Institute at Washington University 225.0x 100 0 100 0.22 GCF_001807105.1 LTZS01 2179 2252 2252 16 3 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001807205.1 HMT-034 HMSC05D03 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 HMSC05D03 43 2642799 60.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/205/GCA_001807205.1_ASM180720v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA269884 1581115 SAMN03433347 ASM180720v1 Scaffold Velvet v. 1.1.04 2015-03-19T08:05:24.053 urinary tract Illumina The Genome Institute at Washington University 188.0x 99.56 0 99.99 0.18 GCF_001807205.1 LWOK01 2470 2536 0 9 4 52 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_001807205.1 HMT-034 HMSC05D03 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 HMSC05D03 43 2642799 60.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/205/GCA_001807205.1_ASM180720v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA269884 1581115 SAMN03433347 ASM180720v1 Scaffold Velvet v. 1.1.04 2015-03-19T08:05:24.053 urinary tract Illumina The Genome Institute at Washington University 188.0x 99.56 0 99.99 0.18 GCF_001807205.1 LWOK01 2470 2536 0 9 4 52 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001807215.1 HMT-072 HMSC05D08 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum HMSC05D08 85 2812770 59.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/215/GCA_001807215.1_ASM180721v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA269885 1581116 SAMN03433348 ASM180721v1 Scaffold Velvet v. 1.1.04 2015-03-19T08:05:24.090 urinary tract Illumina The Genome Institute at Washington University 176.0x 99.23 0.09 99.99 0.05 GCF_001807215.1 LWOJ01 2602 2666 2666 8 3 52 1 Corynebacterium_striatum_homd_HMT_072 GCA_001807225.1 HMT-063 HMSC05E07 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-063 Corynebacterium singulare HMSC05E07 85 2797062 59.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/225/GCA_001807225.1_ASM180722v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium singulare PRJNA269886 1581117 SAMN03433339 ASM180722v1 Scaffold Velvet v. 1.1.04 2015-03-19T08:05:23.590 urinary tract Illumina The Genome Institute at Washington University 177.0x 99.78 0 100 0.05 GCF_001807225.1 LWOI01 2567 2633 2633 7 4 54 1 Corynebacterium_singulare_homd_HMT_063 GCA_001807295.1 HMT-072 HMSC06C06 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum HMSC06C06 74 2652216 59.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/295/GCA_001807295.1_ASM180729v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA269890 1581121 SAMN03433349 ASM180729v1 Scaffold Velvet v. 1.1.04 2015-03-19T08:05:24.127 urinary tract Illumina The Genome Institute at Washington University 187.0x 99.67 0.31 99.98 0.08 GCF_001807295.1 LWOF01 2442 2506 2506 8 3 52 1 Corynebacterium_striatum_homd_HMT_072 GCA_001807315.1 HMT-062 HMSC06D04 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-062 Corynebacterium simulans HMSC06D04 43 2672576 59.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/315/GCA_001807315.1_ASM180731v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium simulans PRJNA269892 1581123 SAMN03433350 ASM180731v1 Scaffold Velvet v. 1.1.04 2015-03-19T08:05:24.187 urinary tract Illumina The Genome Institute at Washington University 186.0x 99.78 0.22 99.99 0.27 GCF_001807315.1 LWOE01 2474 2537 2537 8 3 51 1 Corynebacterium_simulans_homd_HMT_062 GCA_001807345.1 HMT-354 HMSC06F07 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis HMSC06F07 24 2251090 62.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/345/GCA_001807345.1_ASM180734v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA269894 1581125 SAMN03433967 ASM180734v1 Scaffold Velvet v. 1.1.04 2015-03-19T15:05:03.807 urinary tract Illumina The Genome Institute at Washington University 191.0x 94.15 0.15 99.99 0.06 GCF_001807345.1 LWOD01 2011 2068 2068 6 3 47 1 Dermabacter_hominis_homd_HMT_354 GCA_001807365.1 HMT-062 HMSC06G04 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-062 Corynebacterium simulans HMSC06G04 40 2627043 59.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/365/GCA_001807365.1_ASM180736v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium simulans PRJNA269895 1581126 SAMN03433966 ASM180736v1 Scaffold Velvet v. 1.1.04 2015-03-19T15:05:03.677 urinary tract Illumina The Genome Institute at Washington University 159.0x 99.56 0.31 99.99 0.09 GCF_001807365.1 LWOC01 2455 2517 2517 7 2 52 1 Corynebacterium_simulans_homd_HMT_062 GCA_001807465.1 HMT-893 HMSC08A09 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 HMSC08A09 87 3046742 68.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/465/GCA_001807465.1_ASM180746v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA269902 1581133 SAMN03434240 ASM180746v1 Scaffold Velvet v. 1.1.04 2015-03-19T16:05:05.787 missing Illumina The Genome Institute at Washington University 162.0x 99.53 0.95 100 0.06 GCF_001807465.1 LWNX01 2515 2583 2583 14 3 50 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_001807465.1 HMT-893 HMSC08A09 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 HMSC08A09 87 3046742 68.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/465/GCA_001807465.1_ASM180746v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA269902 1581133 SAMN03434240 ASM180746v1 Scaffold Velvet v. 1.1.04 2015-03-19T16:05:05.787 missing Illumina The Genome Institute at Washington University 162.0x 99.53 0.95 100 0.06 GCF_001807465.1 LWNX01 2515 2583 2583 14 3 50 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001807495.1 HMT-062 HMSC08C04 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-062 Corynebacterium simulans HMSC08C04 41 2657712 59.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/495/GCA_001807495.1_ASM180749v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium simulans PRJNA269906 1581137 SAMN03434243 ASM180749v1 Scaffold Velvet v. 1.1.04 2015-03-19T16:05:05.940 urinary tract Illumina The Genome Institute at Washington University 185.0x 97.14 0.62 99.99 0.44 GCF_001807495.1 LWNV01 2503 2565 2565 7 4 50 1 Corynebacterium_simulans_homd_HMT_062 GCA_001807585.1 HMT-354 HMSC08H10 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis HMSC08H10 18 2241036 62.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/585/GCA_001807585.1_ASM180758v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA269913 1581144 SAMN03436136 ASM180758v1 Scaffold Velvet v. 1.1.04 2015-03-20T16:05:05.433 urinary tract Illumina The Genome Institute at Washington University 222.0x 93.57 0.15 99.98 0.05 GCF_001807585.1 LWNQ01 1975 2034 2034 6 4 48 1 Dermabacter_hominis_homd_HMT_354 GCA_001807625.1 HMT-682 HMSC03D10 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa HMSC03D10 140 2535716 51.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/625/GCA_001807625.1_ASM180762v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa PRJNA269803 1581049 SAMN03436200 ASM180762v1 Scaffold Velvet v. 1.1.06 2015-03-20T18:05:06.620 respiratory Illumina The Genome Institute at Washington University 196.0x 99.76 0 99.99 0 GCF_001807625.1 LWNP01 2283 2353 2353 16 3 50 1 Neisseria_mucosa_homd_HMT_682 GCA_001807725.1 HMT-534 HMSC31F03 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens HMSC31F03 37 1914916 37.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/725/GCA_001807725.1_ASM180772v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJNA269843 1581074 SAMN03436231 ASM180772v1 Scaffold Velvet v. 1.1.06 2015-03-20T18:05:08.743 respiratory Illumina The Genome Institute at Washington University 259.0x 99.45 0 99.89 0 GCF_001807725.1 LWNJ01 1816 1866 1866 33 3 13 1 Granulicatella_adiacens_homd_HMT_534 GCA_001807735.1 HMT-598 HMSC31F04 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata HMSC31F04 87 2257660 54.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/735/GCA_001807735.1_ASM180773v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA269844 1581075 SAMN03436258 ASM180773v1 Scaffold Velvet v. 1.1.06 2015-03-20T19:05:06.983 Respiratory Illumina The Genome Institute at Washington University 220.0x 99.87 0.23 99.99 0.02 GCF_001807735.1 LWNI01 2172 2234 2234 14 3 44 1 Neisseria_elongata_homd_HMT_598 GCA_001807785.1 HMT-622 HMSC10A01 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii HMSC10A01 24 2170492 40.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/785/GCA_001807785.1_ASM180778v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA269845 1581076 SAMN03287006 ASM180778v1 Scaffold Velvet v. 1.1.04 2015-01-16T11:05:07.833 stool Illumina The Genome Institute at Washington University 315.0x 99.63 0 100 0.05 GCF_001807785.1 LTZV01 2059 2120 2120 25 3 32 1 Streptococcus_gordonii_homd_HMT_622 GCA_001808255.1 HMT-476 HMSC15G01 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC15G01 47 2178870 49.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/255/GCA_001808255.1_ASM180825v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA269876 1581107 SAMN03287028 ASM180825v1 Scaffold Velvet v. 1.1.04 2015-01-16T11:05:09.163 missing Illumina The Genome Institute at Washington University 529.0x 99.86 0.45 100 0.45 GCF_001808255.1 LUAO01 2057 2135 2135 27 3 47 1 Neisseria_subflava_homd_HMT_476 GCA_001808345.1 HMT-116 HMSC06C11 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis HMSC06C11 22 2373930 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/345/GCA_001808345.1_ASM180834v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA269891 1581122 SAMN03609717 ASM180834v1 Scaffold Velvet v. 1.1.04 2015-05-06T08:06:32.510 urinary tract Illumina The Genome Institute at Washington University 209.0x 99.81 0.1 99.99 0.02 GCF_001808345.1 LWND01 2237 2305 2305 47 2 18 1 Staphylococcus_capitis_homd_HMT_116 GCA_001808385.1 HMT-587 HMSC08A08 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa HMSC08A08 36 2486809 53.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/385/GCA_001808385.1_ASM180838v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA269901 1581132 SAMN03434238 ASM180838v1 Scaffold Velvet v. 1.1.04 2015-03-19T16:05:05.670 missing Illumina The Genome Institute at Washington University 200.0x 99.34 0 100 0.11 GCF_001808385.1 LWNC01 2156 2220 2220 12 4 47 1 Rothia_dentocariosa_homd_HMT_587 GCA_001808725.1 HMT-411 HMSC074F05 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis HMSC074F05 21 2093215 42.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/725/GCA_001808725.1_ASM180872v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA296292 1715164 SAMN04477535 ASM180872v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.210 sputum (induced) Illumina The Genome Institute at Washington University 191.0x 99.53 0.69 100 0 GCF_001808725.1 LTLB01 1961 2048 2048 39 3 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001808745.1 HMT-411 HMSC057G03 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis HMSC057G03 24 2105612 42.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/745/GCA_001808745.1_ASM180874v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_Z PRJNA296293 1715165 SAMN04477536 ASM180874v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.260 stool Illumina The Genome Institute at Washington University 190.0x 100 0.07 100 0 GCF_001808745.1 LTLA01 1983 2062 2062 39 3 36 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001808865.1 HMT-431 HMSC061D10 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 HMSC061D10 52 2096062 39.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/865/GCA_001808865.1_ASM180886v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001553685 PRJNA296336 1715207 SAMN04477560 ASM180886v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:59.157 sputum Illumina The Genome Institute at Washington University 191.0x 99.96 0 100 0.03 GCF_001808865.1 LTKV01 1987 2067 2067 45 2 32 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_001808865.1 HMT-431 HMSC061D10 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 HMSC061D10 52 2096062 39.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/865/GCA_001808865.1_ASM180886v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001553685 PRJNA296336 1715207 SAMN04477560 ASM180886v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:59.157 sputum Illumina The Genome Institute at Washington University 191.0x 99.96 0 100 0.03 GCF_001808865.1 LTKV01 1987 2067 2067 45 2 32 1 Streptococcus_infantis_clade_431_homd_HMT_431 GCA_001808875.1 HMT-764 HMSC064E01 Named Cultivated Oral (Abundance: High) HMT-764 Neisseria sicca HMSC064E01 130 2707625 50.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/875/GCA_001808875.1_ASM180887v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sicca_A PRJNA296179 1715052 SAMN04495796 ASM180887v1 Scaffold Velvet v. 1.1.06 2016-02-16T13:05:08.200 sputum Illumina The Genome Institute at Washington University 148.0x 99.45 0.23 100 0.03 GCF_001808875.1 LTKU01 2437 2508 2508 18 3 49 1 Neisseria_sicca_homd_HMT_764 GCA_001808895.1 HMT-450 HMSC070E08 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC070E08 79 2725857 61.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/895/GCA_001808895.1_ASM180889v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA296133 1715006 SAMN04387652 ASM180889v1 Scaffold Velvet v. 1.1.06 2016-01-06T19:05:04.673 urine Illumina The Genome Institute at Washington University 146.0x 99.67 0 100 0.19 GCF_001808895.1 LTKS01 2545 2611 0 8 3 54 1 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_001808895.1 HMT-450 HMSC070E08 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC070E08 79 2725857 61.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/895/GCA_001808895.1_ASM180889v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA296133 1715006 SAMN04387652 ASM180889v1 Scaffold Velvet v. 1.1.06 2016-01-06T19:05:04.673 urine Illumina The Genome Institute at Washington University 146.0x 99.67 0 100 0.19 GCF_001808895.1 LTKS01 2545 2611 0 8 3 54 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001808945.1 HMT-681 HMSC071B01 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC071B01 45 2421074 59.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/945/GCA_001808945.1_ASM180894v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA296134 1715007 SAMN04456732 ASM180894v1 Scaffold Velvet v. 1.1.06 2016-02-04T13:05:04.553 sputum(induced) Illumina The Genome Institute at Washington University 162.0x 99.33 0 100 0.05 GCF_001808945.1 LTKR01 1849 1919 1919 13 5 51 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001808945.1 HMT-681 HMSC071B01 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC071B01 45 2421074 59.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/945/GCA_001808945.1_ASM180894v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA296134 1715007 SAMN04456732 ASM180894v1 Scaffold Velvet v. 1.1.06 2016-02-04T13:05:04.553 sputum(induced) Illumina The Genome Institute at Washington University 162.0x 99.33 0 100 0.05 GCF_001808945.1 LTKR01 1849 1919 1919 13 5 51 1 Rothia_mucilaginosa_HMT_147_681 GCA_001808955.1 HMT-681 HMSC078H08 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC078H08 23 2312383 59.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/955/GCA_001808955.1_ASM180895v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA296135 1715008 SAMN04456733 ASM180895v1 Scaffold Velvet v. 1.1.06 2016-02-04T13:05:04.717 tracheal aspirate Illumina The Genome Institute at Washington University 173.0x 99.33 0 100 0.02 GCF_001808955.1 LTKQ01 1758 1824 1824 12 5 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001808955.1 HMT-681 HMSC078H08 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC078H08 23 2312383 59.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/955/GCA_001808955.1_ASM180895v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA296135 1715008 SAMN04456733 ASM180895v1 Scaffold Velvet v. 1.1.06 2016-02-04T13:05:04.717 tracheal aspirate Illumina The Genome Institute at Washington University 173.0x 99.33 0 100 0.02 GCF_001808955.1 LTKQ01 1758 1824 1824 12 5 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_001809035.1 HMT-577 HMSC061C02 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens HMSC061C02 78 2284273 55.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/035/GCA_001809035.1_ASM180903v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA296148 1715021 SAMN04495803 ASM180903v1 Scaffold Velvet v. 1.1.06 2016-02-16T13:05:08.600 trach aspirate Illumina The Genome Institute at Washington University 175.0x 95.93 0.49 100 0.09 GCF_001809035.1 LTKM01 2231 2296 2296 13 3 48 1 Eikenella_corrodens_homd_HMT_577 GCA_001809055.1 HMT-576 HMSC034B05 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus HMSC034B05 50 1901829 37.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/055/GCA_001809055.1_ASM180905v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA296149 1715022 SAMN04495797 ASM180905v1 Scaffold Velvet v. 1.1.06 2016-02-16T13:05:08.243 urine Illumina The Genome Institute at Washington University 210.0x 99 0.28 99.99 0.11 GCF_001809055.1 LTKL01 1830 1904 1904 30 3 40 1 Streptococcus_constellatus_homd_HMT_576 GCA_001809065.1 HMT-047 HMSC055G02 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC055G02 45 2410671 58.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/065/GCA_001809065.1_ASM180906v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA296154 1715027 SAMN04495802 ASM180906v1 Scaffold Velvet v. 1.1.06 2016-02-16T13:05:08.503 wound abdominal Illumina The Genome Institute at Washington University 166.0x 100 0 100 0.04 GCF_001809065.1 LTKK01 2071 2141 2141 14 3 52 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001809115.1 HMT-587 HMSC071F11 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa HMSC071F11 51 2547863 53.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/115/GCA_001809115.1_ASM180911v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA296161 1715034 SAMN04495786 ASM180911v1 Scaffold Velvet v. 1.1.06 2016-02-16T13:05:06.637 sputum Illumina The Genome Institute at Washington University 132.0x 99.12 0 99.99 0.14 GCF_001809115.1 LTKI01 2150 2217 2217 12 5 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_001809225.1 HMT-047 HMSC077G07 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC077G07 37 2430573 58.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/225/GCA_001809225.1_ASM180922v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA296169 1715042 SAMN04495789 ASM180922v1 Scaffold Velvet v. 1.1.06 2016-02-16T13:05:07.027 vaginal/rectal Illumina The Genome Institute at Washington University 164.0x 100 0 100 0.14 GCF_001809225.1 LTKD01 2105 2174 2174 13 2 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001809235.1 HMT-450 HMSC072A04 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC072A04 97 2804419 61.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/235/GCA_001809235.1_ASM180923v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA296172 1715045 SAMN04495792 ASM180923v1 Scaffold Velvet v. 1.1.06 2016-02-16T13:05:07.570 urine Illumina The Genome Institute at Washington University 128.0x 99.78 0.11 100 0.13 GCF_001809235.1 LTKC01 2622 2684 0 8 2 51 1 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_001809235.1 HMT-450 HMSC072A04 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC072A04 97 2804419 61.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/235/GCA_001809235.1_ASM180923v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA296172 1715045 SAMN04495792 ASM180923v1 Scaffold Velvet v. 1.1.06 2016-02-16T13:05:07.570 urine Illumina The Genome Institute at Washington University 128.0x 99.78 0.11 100 0.13 GCF_001809235.1 LTKC01 2622 2684 0 8 2 51 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001809245.1 HMT-682 HMSC059F02 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa HMSC059F02 167 2476213 51.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/245/GCA_001809245.1_ASM180924v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA296175 1715048 SAMN04495793 ASM180924v1 Scaffold Velvet v. 1.1.06 2016-02-16T13:05:07.710 bronchial washing Illumina The Genome Institute at Washington University 162.0x 99.7 0 100 0 GCF_001809245.1 LTKB01 2211 2280 2280 16 3 49 1 Neisseria_mucosa_homd_HMT_682 GCA_001809345.1 HMT-101 HMSC072B12 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC072B12 52 2217005 49.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/345/GCA_001809345.1_ASM180934v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA296208 1715080 SAMN04477501 ASM180934v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:56.650 sputum Illumina The Genome Institute at Washington University 180.0x 99.7 0 100 0.05 GCF_001809345.1 LTJW01 2088 2154 2154 18 3 44 1 Neisseria_perflava_homd_HMT_101 GCA_001809405.1 HMT-445 HMSC055A01 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 HMSC055A01 82 2818382 61.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/405/GCA_001809405.1_ASM180940v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA296211 1715083 SAMN04477504 ASM180940v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:56.780 urine Illumina The Genome Institute at Washington University 142.0x 99.78 0.82 99.98 1.49 GCF_001809405.1 LTJU01 2650 2714 0 8 5 50 1 Corynebacterium_hesseae_homd_HMT_445 GCA_001809415.1 HMT-587 HMSC058E10 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa HMSC058E10 47 2439224 53.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/415/GCA_001809415.1_ASM180941v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA296216 1715088 SAMN04477506 ASM180941v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:56.880 bronchoalveolar lavage Illumina The Genome Institute at Washington University 164.0x 99.34 0 100 0.1 GCF_001809415.1 LTJT01 2071 2139 2139 12 5 50 1 Rothia_dentocariosa_homd_HMT_587 GCA_001809455.1 HMT-031 HMSC074C11 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC074C11 23 2456959 58.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/455/GCA_001809455.1_ASM180945v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA296221 1715093 SAMN04477509 ASM180945v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:56.983 vaginal/rectal Illumina The Genome Institute at Washington University 112.0x 100 0 100 0.11 GCF_001809455.1 LTJR01 2138 2207 2207 14 3 51 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_001809525.1 HMT-587 HMSC064D08 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa HMSC064D08 17 2459656 53.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/525/GCA_001809525.1_ASM180952v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA296232 1715104 SAMN04477514 ASM180952v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:57.163 sputum Illumina The Genome Institute at Washington University 162.0x 99.34 0 100 0.04 GCF_001809525.1 LTJO01 2107 2175 2175 13 5 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_001809565.1 HMT-147 HMSC072B03 Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 HMSC072B03 19 2235828 62.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/565/GCA_001809565.1_ASM180956v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA296237 1715109 SAMN04477516 ASM180956v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:57.440 sputum (induced) Illumina The Genome Institute at Washington University 179.0x 99.11 0 100 0.05 GCF_001809565.1 LTJM01 1725 1792 1792 12 6 48 1 Rothia_mucilaginosa_clade_147_homd_HMT_147 GCA_001809565.1 HMT-147 HMSC072B03 Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 HMSC072B03 19 2235828 62.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/565/GCA_001809565.1_ASM180956v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA296237 1715109 SAMN04477516 ASM180956v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:57.440 sputum (induced) Illumina The Genome Institute at Washington University 179.0x 99.11 0 100 0.05 GCF_001809565.1 LTJM01 1725 1792 1792 12 6 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_001809585.1 HMT-476 HMSC072C05 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC072C05 66 2186610 49.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/585/GCA_001809585.1_ASM180958v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA296240 1715112 SAMN04477517 ASM180958v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:57.473 sputum Illumina The Genome Institute at Washington University 183.0x 98.89 0.23 100 0.28 GCF_001809585.1 LTJL01 2075 2148 2148 24 3 45 1 Neisseria_subflava_homd_HMT_476 GCA_001809595.1 HMT-682 HMSC055F11 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa HMSC055F11 147 2464647 51.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/595/GCA_001809595.1_ASM180959v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA296245 1715117 SAMN04477518 ASM180959v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:57.517 sputum Illumina The Genome Institute at Washington University 162.0x 99.62 0.11 99.99 0 GCF_001809595.1 LTJK01 2202 2274 2274 17 3 51 1 Neisseria_mucosa_homd_HMT_682 GCA_001809695.1 HMT-031 HMSC063A05 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC063A05 24 2444943 58.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/695/GCA_001809695.1_ASM180969v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA296258 1715130 SAMN04477526 ASM180969v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:57.883 vaginal/rectal Illumina The Genome Institute at Washington University 147.0x 100 0 100 0 GCF_001809695.1 LTJF01 2118 2188 2188 15 3 51 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_001809885.1 HMT-454 HMSC058E07 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-454 Corynebacterium macclintockiae HMSC058E07 67 2223736 62.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/885/GCA_001809885.1_ASM180988v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macclintockiae PRJNA296285 1715157 SAMN04477532 ASM180988v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.110 tisssue Illumina The Genome Institute at Washington University 180.0x 100 0 99.93 0.04 GCF_001809885.1 LTIW01 1926 1987 0 6 3 51 1 Corynebacterium_macclintockiae_homd_HMT_454 GCA_001809925.1 HMT-047 HMSC064H12 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC064H12 44 2458128 58.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/925/GCA_001809925.1_ASM180992v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA296288 1715160 SAMN04477534 ASM180992v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.180 wound right ear Illumina The Genome Institute at Washington University 162.0x 100 0 100 0.31 GCF_001809925.1 LTIU01 2139 2210 2210 13 3 54 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001810035.1 HMT-101 HMSC058F07 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC058F07 51 2261793 49.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/035/GCA_001810035.1_ASM181003v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA296303 1715175 SAMN04477541 ASM181003v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.433 throat Illumina The Genome Institute at Washington University 177.0x 99.87 0.11 100 0.01 GCF_001810035.1 LTIN01 2151 2220 2220 20 3 45 1 Neisseria_perflava_homd_HMT_101 GCA_001810085.1 HMT-445 HMSC072A02 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 HMSC072A02 92 2753344 60.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/085/GCA_001810085.1_ASM181008v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA296305 1715177 SAMN04477542 ASM181008v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.467 urine Illumina The Genome Institute at Washington University 141.0x 99.69 0.49 99.99 0.08 GCF_001810085.1 LTIM01 2509 2574 0 8 5 51 1 Corynebacterium_hesseae_homd_HMT_445 GCA_001810105.1 HMT-610 HMSC068C04 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens HMSC068C04 122 2328971 48.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/105/GCA_001810105.1_ASM181010v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJNA296307 1715179 SAMN04477543 ASM181010v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.500 sputum (induced) Illumina The Genome Institute at Washington University 172.0x 99.92 0.23 100 0.22 GCF_001810105.1 LTIL01 2177 2263 2263 41 3 41 1 Neisseria_flavescens_homd_HMT_610 GCA_001810135.1 HMT-681 HMSC069D01 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC069D01 36 2346201 59.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/135/GCA_001810135.1_ASM181013v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA296317 1715189 SAMN04477547 ASM181013v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.700 sputum (induced) Illumina The Genome Institute at Washington University 170.0x 99.33 0 100 0.06 GCF_001810135.1 LTIJ01 1784 1845 1845 13 2 45 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001810135.1 HMT-681 HMSC069D01 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC069D01 36 2346201 59.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/135/GCA_001810135.1_ASM181013v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA296317 1715189 SAMN04477547 ASM181013v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.700 sputum (induced) Illumina The Genome Institute at Washington University 170.0x 99.33 0 100 0.06 GCF_001810135.1 LTIJ01 1784 1845 1845 13 2 45 1 Rothia_mucilaginosa_HMT_147_681 GCA_001810165.1 HMT-476 HMSC070A01 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC070A01 26 2212676 49.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/165/GCA_001810165.1_ASM181016v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA296318 1715190 SAMN04477548 ASM181016v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.743 sputum Illumina The Genome Institute at Washington University 180.0x 99.77 0.23 100 0.06 GCF_001810165.1 LTII01 2084 2150 2150 19 3 43 1 Neisseria_subflava_homd_HMT_476 GCA_001810195.1 HMT-047 HMSC077G01 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC077G01 59 2461778 58.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/195/GCA_001810195.1_ASM181019v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA296321 1715193 SAMN04477550 ASM181019v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:58.810 vaginal/rectal Illumina The Genome Institute at Washington University 162.0x 100 0 100 0.2 GCF_001810195.1 LTIG01 2134 2204 2204 13 4 52 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001810345.1 HMT-718 HMSC061E01 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae HMSC061E01 34 1948914 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/345/GCA_001810345.1_ASM181034v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp927911595 PRJNA296340 1715211 SAMN04477561 ASM181034v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:59.190 sputum Illumina The Genome Institute at Washington University 205.0x 99.55 0.01 100 0.11 GCF_001810345.1 LTHY01 1852 1928 1928 25 4 46 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001810515.1 HMT-681 HMSC075F09 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC075F09 42 2309498 59.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/515/GCA_001810515.1_ASM181051v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA299903 1739253 SAMN04477587 ASM181051v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:00.687 throat Illumina The Genome Institute at Washington University 173.0x 99.33 0 100 0.03 GCF_001810515.1 LTHR01 1750 1820 1820 14 6 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001810515.1 HMT-681 HMSC075F09 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC075F09 42 2309498 59.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/515/GCA_001810515.1_ASM181051v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA299903 1739253 SAMN04477587 ASM181051v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:00.687 throat Illumina The Genome Institute at Washington University 173.0x 99.33 0 100 0.03 GCF_001810515.1 LTHR01 1750 1820 1820 14 6 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_001810545.1 HMT-718 HMSC066D02 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae HMSC066D02 30 1976024 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/545/GCA_001810545.1_ASM181054v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp001811025 PRJNA299904 1739254 SAMN04477568 ASM181054v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:59.510 sputum Illumina The Genome Institute at Washington University 202.0x 99.55 0.11 100 0.01 GCF_001810545.1 LWQP01 1906 1981 1981 25 5 44 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001810555.1 HMT-047 HMSC063G05 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC063G05 37 2409263 58.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/555/GCA_001810555.1_ASM181055v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA299905 1739255 SAMN04477569 ASM181055v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:59.553 wound labia Illumina The Genome Institute at Washington University 106.0x 100 0 100 0 GCF_001810555.1 LTHQ01 2076 2146 2146 13 3 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001810585.1 HMT-047 HMSC077C02 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC077C02 52 2436086 59.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/585/GCA_001810585.1_ASM181058v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA299906 1739256 SAMN04477570 ASM181058v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:59.630 vaginal/rectal Illumina The Genome Institute at Washington University 144.0x 98.21 0 99.91 0.09 GCF_001810585.1 LTHP01 2122 2186 2186 13 1 49 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001810635.1 HMT-587 HMSC067H10 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa HMSC067H10 49 2490080 53.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/635/GCA_001810635.1_ASM181063v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA299910 1739260 SAMN04477573 ASM181063v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:05:59.913 bronchial washing Illumina The Genome Institute at Washington University 141.0x 99.34 0.66 100 0.13 GCF_001810635.1 LTYQ01 2135 2204 2204 12 6 50 1 Rothia_dentocariosa_homd_HMT_587 GCA_001810695.1 HMT-445 HMSC065D07 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 HMSC065D07 58 2658959 61.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/695/GCA_001810695.1_ASM181069v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA299914 1739264 SAMN04477578 ASM181069v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:00.327 urine Illumina The Genome Institute at Washington University 150.0x 99.78 0 99.99 0.05 GCF_001810695.1 LTHJ01 2445 2508 0 8 4 50 1 Corynebacterium_hesseae_homd_HMT_445 GCA_001810775.1 HMT-681 HMSC062H08 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC062H08 38 2299565 59.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/775/GCA_001810775.1_ASM181077v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA299919 1739269 SAMN04477583 ASM181077v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:00.493 sputum Illumina The Genome Institute at Washington University 151.0x 99.33 0.67 100 0.01 GCF_001810775.1 LTHF01 1750 1814 1814 14 3 46 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001810775.1 HMT-681 HMSC062H08 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC062H08 38 2299565 59.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/775/GCA_001810775.1_ASM181077v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA299919 1739269 SAMN04477583 ASM181077v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:00.493 sputum Illumina The Genome Institute at Washington University 151.0x 99.33 0.67 100 0.01 GCF_001810775.1 LTHF01 1750 1814 1814 14 3 46 1 Rothia_mucilaginosa_HMT_147_681 GCA_001810995.1 HMT-200 HMSC064B12 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii HMSC064B12 56 2121738 27.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/995/GCA_001810995.1_ASM181099v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA299929 1739279 SAMN04477591 ASM181099v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:00.893 wound r breast Illumina The Genome Institute at Washington University 189.0x 100 0 100 0.15 GCF_001810995.1 LTGW01 1950 2008 2008 21 3 33 1 Fusobacterium_vincentii_homd_HMT_200 GCA_001811025.1 HMT-718 HMSC066D03 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae HMSC066D03 35 1974023 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/025/GCA_001811025.1_ASM181102v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp001811025 PRJNA299930 1739280 SAMN04477593 ASM181102v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:00.967 sputum Illumina The Genome Institute at Washington University 202.0x 99.55 0 100 0.13 GCF_001811025.1 LWQN01 1905 1980 1980 25 4 45 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001811065.1 HMT-101 HMSC075C12 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC075C12 76 2328563 49.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/065/GCA_001811065.1_ASM181106v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA299932 1739282 SAMN04477595 ASM181106v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:01.037 tracheal aspirate Illumina The Genome Institute at Washington University 164.0x 98.8 0.23 100 0.02 GCF_001811065.1 LTGU01 2241 2309 2309 20 3 44 1 Neisseria_perflava_homd_HMT_101 GCA_001811075.1 HMT-681 HMSC069C03 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC069C03 26 2217530 59.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/075/GCA_001811075.1_ASM181107v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA299933 1739283 SAMN04477597 ASM181107v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:01.100 sputum Illumina The Genome Institute at Washington University 136.0x 99.33 0 100 0.04 GCF_001811075.1 LTGT01 1737 1805 1805 13 6 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001811075.1 HMT-681 HMSC069C03 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC069C03 26 2217530 59.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/075/GCA_001811075.1_ASM181107v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA299933 1739283 SAMN04477597 ASM181107v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:01.100 sputum Illumina The Genome Institute at Washington University 136.0x 99.33 0 100 0.04 GCF_001811075.1 LTGT01 1737 1805 1805 13 6 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_001811085.1 HMT-622 HMSC062B01 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii HMSC062B01 45 2290184 40.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/085/GCA_001811085.1_ASM181108v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA299934 1739284 SAMN04477596 ASM181108v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:01.067 sputum Illumina The Genome Institute at Washington University 148.0x 100 0 99.99 0.18 GCF_001811085.1 LTGS01 2175 2248 2248 31 3 38 1 Streptococcus_gordonii_homd_HMT_622 GCA_001811145.1 HMT-034 HMSC062A03 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 HMSC062A03 66 2606195 60.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/145/GCA_001811145.1_ASM181114v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA299935 1739285 SAMN04477599 ASM181114v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:01.163 vaginal/rectal Illumina The Genome Institute at Washington University 153.0x 99.56 1.1 99.99 1 GCF_001811145.1 LTGR01 2405 2467 0 7 3 51 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_001811145.1 HMT-034 HMSC062A03 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 HMSC062A03 66 2606195 60.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/145/GCA_001811145.1_ASM181114v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA299935 1739285 SAMN04477599 ASM181114v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:01.163 vaginal/rectal Illumina The Genome Institute at Washington University 153.0x 99.56 1.1 99.99 1 GCF_001811145.1 LTGR01 2405 2467 0 7 3 51 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001811205.1 HMT-047 HMSC063F04 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC063F04 35 2425142 58.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/205/GCA_001811205.1_ASM181120v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA299942 1739292 SAMN04477601 ASM181120v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:01.230 cervical Illumina The Genome Institute at Washington University 149.0x 100 0 100 0.36 GCF_001811205.1 LTGN01 2080 2150 2150 13 3 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001811325.1 HMT-577 HMSC071B05 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens HMSC071B05 41 2200272 55.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/325/GCA_001811325.1_ASM181132v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA299950 1739300 SAMN04477611 ASM181132v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:01.757 abscess l hip Illumina The Genome Institute at Washington University 152.0x 96.03 0.79 99.98 0.19 GCF_001811325.1 LTGG01 2035 2095 2095 10 3 46 1 Eikenella_corrodens_homd_HMT_577 GCA_001811365.1 HMT-101 HMSC061E12 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC061E12 37 2229188 48.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/365/GCA_001811365.1_ASM181136v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp001838135 PRJNA299951 1739301 SAMN04477613 ASM181136v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:01.890 sputum Illumina The Genome Institute at Washington University 179.0x 100 0 100 0.28 GCF_001811365.1 LTGF01 2060 2163 2163 48 3 51 1 Neisseria_perflava_homd_HMT_101 GCA_001811395.1 HMT-929 HMSC064C01 Unnamed Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-929 Peptoniphilaceae [G3] bacterium HMT-929 HMSC064C01 24 1607714 34.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/395/GCA_001811395.1_ASM181139v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria;s__Fenollaria massiliensis PRJNA299954 1739304 SAMN04477615 ASM181139v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:02.017 wound r breast Illumina The Genome Institute at Washington University 249.0x 96.85 0 99.88 0.16 GCF_001811395.1 LTGD01 1471 1537 1537 26 4 35 1 Fenollaria_massiliensis_homd_HMT_929 GCA_001811425.1 HMT-187 HMSC062D09 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-187 Peptoniphilus grossensis HMSC062D09 70 1883002 34.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/425/GCA_001811425.1_ASM181142v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A grossensis PRJNA299955 1739305 SAMN04477619 ASM181142v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:02.280 wound perineum Illumina The Genome Institute at Washington University 147.0x 98.6 0 98.8 0.5 GCF_001811425.1 LTGC01 1730 1803 1803 32 4 36 1 Peptoniphilus_grossensis_homd_HMT_187 GCA_001811455.1 HMT-587 HMSC065G12 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa HMSC065G12 29 2512257 53.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/455/GCA_001811455.1_ASM181145v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA299958 1739308 SAMN04477617 ASM181145v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:02.160 sputum induced Illumina The Genome Institute at Washington University 144.0x 99.34 0 100 0.11 GCF_001811455.1 LTFZ01 2135 2201 2201 12 4 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_001811565.1 HMT-445 HMSC078A10 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 HMSC078A10 53 2761821 60.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/565/GCA_001811565.1_ASM181156v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA299962 1739312 SAMN04477624 ASM181156v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:03.040 unspecified human Illumina The Genome Institute at Washington University 144.0x 99.78 0 99.99 0.03 GCF_001811565.1 LTFV01 2557 2622 0 8 5 51 1 Corynebacterium_hesseae_homd_HMT_445 GCA_001811805.1 HMT-047 HMSC064E08 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC064E08 16 2436100 58.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/805/GCA_001811805.1_ASM181180v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA299974 1739324 SAMN04477669 ASM181180v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:06.360 cervical Illumina The Genome Institute at Washington University 109.0x 100 0 100 0 GCF_001811805.1 LTFJ01 2093 2162 2162 14 3 51 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001811855.1 HMT-101 HMSC063B05 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC063B05 70 2206325 49.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/855/GCA_001811855.1_ASM181185v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA299978 1739328 SAMN04477637 ASM181185v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:04.870 sputum Illumina The Genome Institute at Washington University 179.0x 99.47 0.34 100 0.02 GCF_001811855.1 LTYP01 2093 2160 2160 18 3 45 1 Neisseria_perflava_homd_HMT_101 GCA_001811945.1 HMT-101 HMSC071A01 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC071A01 52 2271132 49.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/945/GCA_001811945.1_ASM181194v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA299982 1739332 SAMN04477641 ASM181194v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:05.133 throat Illumina The Genome Institute at Washington University 176.0x 99.7 0 100 0.03 GCF_001811945.1 LTFD01 2162 2231 2231 18 3 47 1 Neisseria_perflava_homd_HMT_101 GCA_001812015.1 HMT-411 HMSC073D05 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis HMSC073D05 25 2022881 41.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/015/GCA_001812015.1_ASM181201v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_D PRJNA299986 1739336 SAMN04477645 ASM181201v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:05.690 stool Illumina The Genome Institute at Washington University 159.0x 100 0.41 99.99 0 GCF_001812015.1 LTEZ01 1891 1967 1967 34 4 37 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001812045.1 HMT-197 HMSC066H03 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-197 Kocuria rhizophila HMSC066H03 8 2772250 70.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/045/GCA_001812045.1_ASM181204v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria rhizophila PRJNA299987 1739337 SAMN04477670 ASM181204v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:06.377 vaginal/rectal Illumina The Genome Institute at Washington University 123.0x 98.36 0 99.99 0.72 GCF_001812045.1 LTEY01 2384 2453 2453 17 2 49 1 Kocuria_rhizophila_homd_HMT_197 GCA_001812055.1 HMT-101 HMSC067H04 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC067H04 56 2302917 49.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/055/GCA_001812055.1_ASM181205v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA299988 1739338 SAMN04477646 ASM181205v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:05.723 Bronchoalveolar lavage Illumina The Genome Institute at Washington University 158.0x 99.7 0 100 0.03 GCF_001812055.1 LTEX01 2201 2271 2271 19 3 47 1 Neisseria_perflava_homd_HMT_101 GCA_001812085.1 HMT-681 HMSC065C12 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC065C12 17 2274293 59.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/085/GCA_001812085.1_ASM181208v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA299990 1739340 SAMN04477648 ASM181208v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:05.907 sputum induced Illumina The Genome Institute at Washington University 165.0x 99.33 0 100 0.11 GCF_001812085.1 LTEV01 1759 1826 1826 12 6 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001812085.1 HMT-681 HMSC065C12 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC065C12 17 2274293 59.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/085/GCA_001812085.1_ASM181208v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA299990 1739340 SAMN04477648 ASM181208v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:05.907 sputum induced Illumina The Genome Institute at Washington University 165.0x 99.33 0 100 0.11 GCF_001812085.1 LTEV01 1759 1826 1826 12 6 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_001812205.1 HMT-681 HMSC069C10 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC069C10 25 2285914 59.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/205/GCA_001812205.1_ASM181220v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA299996 1739346 SAMN04477654 ASM181220v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:06.050 sputum Illumina The Genome Institute at Washington University 175.0x 99.33 0 100 0.04 GCF_001812205.1 LTEP01 1752 1820 1820 14 5 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001812205.1 HMT-681 HMSC069C10 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC069C10 25 2285914 59.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/205/GCA_001812205.1_ASM181220v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA299996 1739346 SAMN04477654 ASM181220v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:06.050 sputum Illumina The Genome Institute at Washington University 175.0x 99.33 0 100 0.04 GCF_001812205.1 LTEP01 1752 1820 1820 14 5 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_001812225.1 HMT-609 HMSC072F04 Named Cultivated Oral (Abundance: Medium) HMT-609 Neisseria flava HMSC072F04 128 2419950 51.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/225/GCA_001812225.1_ASM181222v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flava PRJNA299998 1739348 SAMN04477656 ASM181222v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:06.090 tracheal aspirate Illumina The Genome Institute at Washington University 165.0x 99.45 0.23 99.99 0.1 GCF_001812225.1 LTEO01 2164 2236 2236 16 3 52 1 Neisseria_flava_homd_HMT_609 GCA_001812285.1 HMT-681 HMSC065B04 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC065B04 14 2319336 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/285/GCA_001812285.1_ASM181228v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA299999 1739349 SAMN04477657 ASM181228v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:06.110 sputum Illumina The Genome Institute at Washington University 170.0x 99.33 0 100 0.02 GCF_001812285.1 LTEN01 1765 1833 1833 14 7 46 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001812285.1 HMT-681 HMSC065B04 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC065B04 14 2319336 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/285/GCA_001812285.1_ASM181228v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA299999 1739349 SAMN04477657 ASM181228v1 Scaffold Velvet v. 1.1.06 2016-02-06T08:06:06.110 sputum Illumina The Genome Institute at Washington University 170.0x 99.33 0 100 0.02 GCF_001812285.1 LTEN01 1765 1833 1833 14 7 46 1 Rothia_mucilaginosa_HMT_147_681 GCA_001812505.1 HMT-031 HMSC064E10 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC064E10 10 2460166 58.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/505/GCA_001812505.1_ASM181250v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA300014 1739364 SAMN04480028 ASM181250v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:22.907 cervical Illumina The Genome Institute at Washington University 147.0x 100 0 100 0.14 GCF_001812505.1 LTYH01 2152 2221 2221 14 4 50 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_001812605.1 HMT-476 HMSC073G10 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC073G10 66 2317614 49.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/605/GCA_001812605.1_ASM181260v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA300019 1739369 SAMN04480033 ASM181260v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.100 sputum Illumina The Genome Institute at Washington University 167.0x 99.92 0.23 100 0.5 GCF_001812605.1 LTYD01 2225 2294 2294 24 3 41 1 Neisseria_subflava_homd_HMT_476 GCA_001812725.1 HMT-101 HMSC067G12 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC067G12 53 2304183 49.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/725/GCA_001812725.1_ASM181272v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA300025 1739375 SAMN04480039 ASM181272v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.397 bronchial washing Illumina The Genome Institute at Washington University 91.0x 99.7 0 100 0.03 GCF_001812725.1 LTXX01 2212 2286 2286 19 3 51 1 Neisseria_perflava_homd_HMT_101 GCA_001812735.1 HMT-476 HMSC069H12 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC069H12 75 2272351 49.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/735/GCA_001812735.1_ASM181273v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA300026 1739376 SAMN04480040 ASM181273v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.430 sputum Illumina The Genome Institute at Washington University 176.0x 99.7 0.45 100 0.06 GCF_001812735.1 LTXW01 2190 2270 2270 28 3 48 1 Neisseria_subflava_homd_HMT_476 GCA_001812775.1 HMT-147 HMSC068F09 Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 HMSC068F09 23 2239545 62.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/775/GCA_001812775.1_ASM181277v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA300028 1739378 SAMN04480042 ASM181277v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.500 sputum Illumina The Genome Institute at Washington University 142.0x 99.11 0 100 0.07 GCF_001812775.1 LTXV01 1727 1794 1794 12 5 49 1 Rothia_mucilaginosa_clade_147_homd_HMT_147 GCA_001812775.1 HMT-147 HMSC068F09 Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 HMSC068F09 23 2239545 62.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/775/GCA_001812775.1_ASM181277v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA300028 1739378 SAMN04480042 ASM181277v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.500 sputum Illumina The Genome Institute at Washington University 142.0x 99.11 0 100 0.07 GCF_001812775.1 LTXV01 1727 1794 1794 12 5 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_001812845.1 HMT-047 HMSC065H09 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC065H09 36 2493204 58.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/845/GCA_001812845.1_ASM181284v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA300032 1739382 SAMN04480046 ASM181284v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.713 wound vulva Illumina The Genome Institute at Washington University 157.0x 100 0.6 100 1.4 GCF_001812845.1 LTXS01 2168 2238 2238 13 3 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001812885.1 HMT-101 HMSC067G11 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC067G11 55 2302204 49.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/885/GCA_001812885.1_ASM181288v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA300034 1739384 SAMN04480047 ASM181288v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.747 bronchial washing Illumina The Genome Institute at Washington University 151.0x 99.7 0 100 0.03 GCF_001812885.1 LTXQ01 2200 2271 2271 19 3 48 1 Neisseria_perflava_homd_HMT_101 GCA_001812895.1 HMT-681 HMSC069C04 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC069C04 65 2314459 59.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/895/GCA_001812895.1_ASM181289v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA300033 1739383 SAMN04480055 ASM181289v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.090 sputum Illumina The Genome Institute at Washington University 170.0x 99.17 0 100 0.01 GCF_001812895.1 LTXR01 1776 1839 1839 14 3 45 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001812895.1 HMT-681 HMSC069C04 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC069C04 65 2314459 59.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/895/GCA_001812895.1_ASM181289v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA300033 1739383 SAMN04480055 ASM181289v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.090 sputum Illumina The Genome Institute at Washington University 170.0x 99.17 0 100 0.01 GCF_001812895.1 LTXR01 1776 1839 1839 14 3 45 1 Rothia_mucilaginosa_HMT_147_681 GCA_001812965.1 HMT-144 HMSC075C01 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 HMSC075C01 142 3272120 68.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/965/GCA_001812965.1_ASM181296v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA300037 1739387 SAMN04480050 ASM181296v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.860 abscess l cheek Illumina The Genome Institute at Washington University 122.0x 99.84 0.95 100 0.11 GCF_001812965.1 LTXO01 2684 2756 2756 14 6 51 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_001812965.1 HMT-144 HMSC075C01 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 HMSC075C01 142 3272120 68.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/965/GCA_001812965.1_ASM181296v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA300037 1739387 SAMN04480050 ASM181296v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.860 abscess l cheek Illumina The Genome Institute at Washington University 122.0x 99.84 0.95 100 0.11 GCF_001812965.1 LTXO01 2684 2756 2756 14 6 51 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001812975.1 HMT-681 HMSC073B08 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC073B08 46 2272208 59.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/975/GCA_001812975.1_ASM181297v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300038 1739388 SAMN04480051 ASM181297v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.910 sputum Illumina The Genome Institute at Washington University 171.0x 99.33 0 100 0.28 GCF_001812975.1 LTXN01 1733 1800 1800 13 5 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001812975.1 HMT-681 HMSC073B08 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC073B08 46 2272208 59.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/975/GCA_001812975.1_ASM181297v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300038 1739388 SAMN04480051 ASM181297v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:23.910 sputum Illumina The Genome Institute at Washington University 171.0x 99.33 0 100 0.28 GCF_001812975.1 LTXN01 1733 1800 1800 13 5 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_001813035.1 HMT-543 HMSC071H03 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus HMSC071H03 38 1942366 39.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/035/GCA_001813035.1_ASM181303v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA300041 1739391 SAMN04480053 ASM181303v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.000 drainage jackson pratt Illumina The Genome Institute at Washington University 155.0x 98.02 0 98.25 0.4 GCF_001813035.1 LTXK01 1980 2047 2047 34 3 29 1 Streptococcus_anginosus_homd_HMT_543 GCA_001813105.1 HMT-411 HMSC072C09 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis HMSC072C09 27 2132498 42.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/105/GCA_001813105.1_ASM181310v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001813105 PRJNA300047 1739397 SAMN04480070 ASM181310v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.787 sputum induced Illumina The Genome Institute at Washington University 180.0x 99.83 0.51 99.98 0.02 GCF_001813105.1 LTXE01 2018 2100 2100 34 4 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001813145.1 HMT-681 HMSC066G02 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC066G02 31 2269254 59.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/145/GCA_001813145.1_ASM181314v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA300048 1739398 SAMN04480060 ASM181314v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.463 sputum Illumina The Genome Institute at Washington University 176.0x 99.33 0 100 0.01 GCF_001813145.1 LTXD01 1712 1781 1781 13 5 50 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001813145.1 HMT-681 HMSC066G02 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC066G02 31 2269254 59.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/145/GCA_001813145.1_ASM181314v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA300048 1739398 SAMN04480060 ASM181314v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.463 sputum Illumina The Genome Institute at Washington University 176.0x 99.33 0 100 0.01 GCF_001813145.1 LTXD01 1712 1781 1781 13 5 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_001813175.1 HMT-034 HMSC069E04 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 HMSC069E04 90 2642255 60.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/175/GCA_001813175.1_ASM181317v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA300050 1739400 SAMN04480061 ASM181317v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.493 vaginal/rectal Illumina The Genome Institute at Washington University 150.0x 99.56 0.66 100 0.14 GCF_001813175.1 LWQH01 2437 2502 0 8 4 52 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_001813175.1 HMT-034 HMSC069E04 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 HMSC069E04 90 2642255 60.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/175/GCA_001813175.1_ASM181317v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA300050 1739400 SAMN04480061 ASM181317v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.493 vaginal/rectal Illumina The Genome Institute at Washington University 150.0x 99.56 0.66 100 0.14 GCF_001813175.1 LWQH01 2437 2502 0 8 4 52 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001813205.1 HMT-750 HMSC064B08 Named Cultivated Oral (Abundance: Medium) HMT-750 Lancefieldella rimae HMSC064B08 18 1592142 49.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/205/GCA_001813205.1_ASM181320v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__Lancefieldella rimae PRJNA300052 1739402 SAMN04480062 ASM181320v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.527 abscess l neck Illumina The Genome Institute at Washington University 141.0x 100 0 98.97 0.09 GCF_001813205.1 LTXB01 1412 1470 1470 9 4 45 0 Lancefieldella_rimae_homd_HMT_750 GCA_001813295.1 HMT-411 HMSC072G04 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis HMSC072G04 50 2235189 41.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/295/GCA_001813295.1_ASM181329v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001813295 PRJNA300058 1739408 SAMN04480066 ASM181329v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.663 throat Illumina The Genome Institute at Washington University 179.0x 100 0.17 100 0.02 GCF_001813295.1 LTWX01 2116 2198 2198 41 3 37 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001813335.1 HMT-764 HMSC055H02 Named Cultivated Oral (Abundance: High) HMT-764 Neisseria sicca HMSC055H02 81 2419681 51.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/335/GCA_001813335.1_ASM181333v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sicca_C PRJNA300061 1739411 SAMN04480068 ASM181333v1 Scaffold Velvet v. 1.1.06 2016-02-08T12:05:24.720 sputum Illumina The Genome Institute at Washington University 122.0x 99.87 0.02 100 0.46 GCF_001813335.1 LTWU01 2209 2303 2303 39 3 51 1 Neisseria_sicca_homd_HMT_764 GCA_001813425.1 HMT-445 HMSC056E09 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 HMSC056E09 59 2672238 61.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/425/GCA_001813425.1_ASM181342v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA300066 1739416 SAMN04480353 ASM181342v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:23.727 urine Illumina The Genome Institute at Washington University 112.0x 99.78 0 99.99 0.06 GCF_001813425.1 LTWQ01 2458 2521 0 8 5 49 1 Corynebacterium_hesseae_homd_HMT_445 GCA_001813505.1 HMT-411 HMSC061E03 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis HMSC061E03 30 2214986 41.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/505/GCA_001813505.1_ASM181350v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001813505 PRJNA300071 1739421 SAMN04480345 ASM181350v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:23.460 sputum Illumina The Genome Institute at Washington University 180.0x 99.83 0.17 99.97 0.04 GCF_001813505.1 LTWN01 2112 2193 2193 40 5 35 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001813565.1 HMT-681 HMSC068E02 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC068E02 35 2296639 59.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/565/GCA_001813565.1_ASM181356v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA300073 1739423 SAMN04480346 ASM181356v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:23.497 nasal Illumina The Genome Institute at Washington University 174.0x 99.33 0 100 0.02 GCF_001813565.1 LTWL01 1733 1805 1805 13 7 51 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001813565.1 HMT-681 HMSC068E02 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC068E02 35 2296639 59.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/565/GCA_001813565.1_ASM181356v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA300073 1739423 SAMN04480346 ASM181356v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:23.497 nasal Illumina The Genome Institute at Washington University 174.0x 99.33 0 100 0.02 GCF_001813565.1 LTWL01 1733 1805 1805 13 7 51 1 Rothia_mucilaginosa_HMT_147_681 GCA_001813675.1 HMT-411 HMSC078D09 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis HMSC078D09 31 2163570 41.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/675/GCA_001813675.1_ASM181367v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001813675 PRJNA300080 1739430 SAMN04480352 ASM181367v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:23.693 tissies l great toe Illumina The Genome Institute at Washington University 180.0x 100 0.24 99.99 0 GCF_001813675.1 LTWF01 2066 2148 2148 39 3 39 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001813685.1 HMT-681 HMSC061E04 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC061E04 26 2237336 59.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/685/GCA_001813685.1_ASM181368v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300081 1739431 SAMN04480354 ASM181368v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:23.760 sputum Illumina The Genome Institute at Washington University 156.0x 99.33 0 100 0.03 GCF_001813685.1 LTWE01 1738 1803 1803 14 4 46 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001813685.1 HMT-681 HMSC061E04 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC061E04 26 2237336 59.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/685/GCA_001813685.1_ASM181368v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300081 1739431 SAMN04480354 ASM181368v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:23.760 sputum Illumina The Genome Institute at Washington University 156.0x 99.33 0 100 0.03 GCF_001813685.1 LTWE01 1738 1803 1803 14 4 46 1 Rothia_mucilaginosa_HMT_147_681 GCA_001813725.1 HMT-681 HMSC072B04 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC072B04 36 2269450 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/725/GCA_001813725.1_ASM181372v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300082 1739432 SAMN04480359 ASM181372v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.067 sputum Illumina The Genome Institute at Washington University 145.0x 99.33 0 100 0.02 GCF_001813725.1 LTWD01 1741 1805 1805 14 3 46 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001813725.1 HMT-681 HMSC072B04 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC072B04 36 2269450 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/725/GCA_001813725.1_ASM181372v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300082 1739432 SAMN04480359 ASM181372v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.067 sputum Illumina The Genome Institute at Washington University 145.0x 99.33 0 100 0.02 GCF_001813725.1 LTWD01 1741 1805 1805 14 3 46 1 Rothia_mucilaginosa_HMT_147_681 GCA_001813745.1 HMT-420 HMSC065F01 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis HMSC065F01 56 2127181 27.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/745/GCA_001813745.1_ASM181374v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA300085 1739435 SAMN04480360 ASM181374v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.100 wound gastric Illumina The Genome Institute at Washington University 188.0x 100 0 100 0.02 GCF_001813745.1 LTWB01 1939 2005 2005 19 3 43 1 Fusobacterium_animalis_homd_HMT_420 GCA_001813755.1 HMT-450 HMSC074H12 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC074H12 76 2810041 60.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/755/GCA_001813755.1_ASM181375v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA300086 1739436 SAMN04480357 ASM181375v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:23.867 urine Illumina The Genome Institute at Washington University 138.0x 99.78 0.51 100 1.15 GCF_001813755.1 LTWA01 2559 2622 0 8 4 50 1 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_001813755.1 HMT-450 HMSC074H12 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC074H12 76 2810041 60.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/755/GCA_001813755.1_ASM181375v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA300086 1739436 SAMN04480357 ASM181375v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:23.867 urine Illumina The Genome Institute at Washington University 138.0x 99.78 0.51 100 1.15 GCF_001813755.1 LTWA01 2559 2622 0 8 4 50 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001813805.1 HMT-543 HMSC066F10 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus HMSC066F10 58 1926242 38.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/805/GCA_001813805.1_ASM181380v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA300087 1739437 SAMN04480364 ASM181380v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.233 wound sacral Illumina The Genome Institute at Washington University 207.0x 99.88 0.83 100 0.19 GCF_001813805.1 LTVZ01 1904 1982 1982 36 3 38 1 Streptococcus_anginosus_homd_HMT_543 GCA_001813895.1 HMT-681 HMSC071C12 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC071C12 37 2353068 59.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/895/GCA_001813895.1_ASM181389v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300096 1739446 SAMN04480369 ASM181389v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.403 tracheal aspirate Illumina The Genome Institute at Washington University 144.0x 99.33 0 100 0.1 GCF_001813895.1 LTVT01 1795 1862 1862 12 6 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001813895.1 HMT-681 HMSC071C12 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC071C12 37 2353068 59.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/895/GCA_001813895.1_ASM181389v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300096 1739446 SAMN04480369 ASM181389v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.403 tracheal aspirate Illumina The Genome Institute at Washington University 144.0x 99.33 0 100 0.1 GCF_001813895.1 LTVT01 1795 1862 1862 12 6 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_001813925.1 HMT-034 HMSC072D12 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 HMSC072D12 45 2566381 60.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/925/GCA_001813925.1_ASM181392v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA300097 1739447 SAMN04480368 ASM181392v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.370 urine Illumina The Genome Institute at Washington University 143.0x 99.56 0 99.99 0.02 GCF_001813925.1 LTVS01 2397 2462 0 8 4 52 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_001813925.1 HMT-034 HMSC072D12 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 HMSC072D12 45 2566381 60.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/925/GCA_001813925.1_ASM181392v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA300097 1739447 SAMN04480368 ASM181392v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.370 urine Illumina The Genome Institute at Washington University 143.0x 99.56 0 99.99 0.02 GCF_001813925.1 LTVS01 2397 2462 0 8 4 52 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001813965.1 HMT-147 HMSC072E10 Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 HMSC072E10 25 2245099 62.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/965/GCA_001813965.1_ASM181396v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA300098 1739448 SAMN04480370 ASM181396v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.437 sputum Illumina The Genome Institute at Washington University 137.0x 98.78 0 100 0 GCF_001813965.1 LTVR01 1720 1785 1785 11 6 47 1 Rothia_mucilaginosa_clade_147_homd_HMT_147 GCA_001813965.1 HMT-147 HMSC072E10 Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 HMSC072E10 25 2245099 62.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/965/GCA_001813965.1_ASM181396v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA300098 1739448 SAMN04480370 ASM181396v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.437 sputum Illumina The Genome Institute at Washington University 137.0x 98.78 0 100 0 GCF_001813965.1 LTVR01 1720 1785 1785 11 6 47 1 Rothia_mucilaginosa_HMT_147_681 GCA_001813985.1 HMT-671 HMSC062G12 Named Cultivated Oral (Abundance: Low) HMT-671 Schaalia meyeri HMSC062G12 23 2085934 65.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/813/985/GCA_001813985.1_ASM181398v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia meyeri PRJNA300100 1739450 SAMN04480372 ASM181398v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.550 abscess l neck Illumina The Genome Institute at Washington University 139.0x 100 0.47 100 0.06 GCF_001813985.1 LTVP01 1813 1871 1871 6 3 48 1 Schaalia_meyeri_homd_HMT_671 GCA_001814055.1 HMT-718 HMSC073C03 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae HMSC073C03 39 2007726 39.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/055/GCA_001814055.1_ASM181405v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA300102 1739452 SAMN04480373 ASM181405v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.583 tracheal aspirate Illumina The Genome Institute at Washington University 194.0x 99.89 0 100 0 GCF_001814055.1 LTVN01 1934 2012 2012 29 3 45 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001814095.1 HMT-101 HMSC068C12 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC068C12 55 2209874 49.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/095/GCA_001814095.1_ASM181409v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA300106 1739456 SAMN04480384 ASM181409v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.973 sputum Illumina The Genome Institute at Washington University 150.0x 99.7 0.11 100 0.02 GCF_001814095.1 LTVK01 2097 2168 2168 18 3 49 1 Neisseria_perflava_homd_HMT_101 GCA_001814205.1 HMT-587 HMSC036D11 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa HMSC036D11 46 2491181 53.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/205/GCA_001814205.1_ASM181420v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA300112 1739462 SAMN04480381 ASM181420v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.863 bronch wash cf Illumina The Genome Institute at Washington University 105.0x 99.34 0 100 0.11 GCF_001814205.1 LTVG01 2095 2158 2158 12 3 47 1 Rothia_dentocariosa_homd_HMT_587 GCA_001814215.1 HMT-638 HMSC062D07 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 HMSC062D07 18 1753374 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/215/GCA_001814215.1_ASM181421v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_I PRJNA300111 1739461 SAMN04480380 ASM181421v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.827 wound sinus Illumina The Genome Institute at Washington University 150.0x 100 0.17 99.99 0.04 GCF_001814215.1 LTVH01 1711 1782 0 34 3 33 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_001814215.1 HMT-638 HMSC062D07 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 HMSC062D07 18 1753374 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/215/GCA_001814215.1_ASM181421v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_I PRJNA300111 1739461 SAMN04480380 ASM181421v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.827 wound sinus Illumina The Genome Institute at Washington University 150.0x 100 0.17 99.99 0.04 GCF_001814215.1 LTVH01 1711 1782 0 34 3 33 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_001814235.1 HMT-047 HMSC070B05 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC070B05 46 2417058 58.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/235/GCA_001814235.1_ASM181423v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA300114 1739464 SAMN04480383 ASM181423v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:24.937 cervical Illumina The Genome Institute at Washington University 120.0x 100 0 100 0.18 GCF_001814235.1 LTVE01 2076 2148 2148 14 4 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001814295.1 HMT-576 HMSC067A03 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus HMSC067A03 45 1804950 37.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/295/GCA_001814295.1_ASM181429v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA300117 1739467 SAMN04480386 ASM181429v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:25.037 abscess facial Illumina The Genome Institute at Washington University 149.0x 99 0.09 99.92 0.11 GCF_001814295.1 LTVC01 1731 1821 1821 47 3 39 1 Streptococcus_constellatus_homd_HMT_576 GCA_001814445.1 HMT-101 HMSC066B07 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC066B07 138 2249644 49.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/445/GCA_001814445.1_ASM181444v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp001838135 PRJNA300126 1739476 SAMN04480396 ASM181444v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:25.360 trachael aspirate Illumina The Genome Institute at Washington University 178.0x 99.77 0.02 100 0.04 GCF_001814445.1 LTUT01 2064 2161 2161 36 6 54 1 Neisseria_perflava_homd_HMT_101 GCA_001814485.1 HMT-681 HMSC066G07 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC066G07 23 2298993 59.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/485/GCA_001814485.1_ASM181448v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA300125 1739475 SAMN04480395 ASM181448v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:25.330 sputum Illumina The Genome Institute at Washington University 174.0x 99.33 0 100 0.02 GCF_001814485.1 LTUU01 1767 1835 1835 13 5 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001814485.1 HMT-681 HMSC066G07 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC066G07 23 2298993 59.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/485/GCA_001814485.1_ASM181448v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA300125 1739475 SAMN04480395 ASM181448v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:25.330 sputum Illumina The Genome Institute at Washington University 174.0x 99.33 0 100 0.02 GCF_001814485.1 LTUU01 1767 1835 1835 13 5 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_001814525.1 HMT-445 HMSC078C09 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 HMSC078C09 72 2669014 61.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/525/GCA_001814525.1_ASM181452v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA300128 1739478 SAMN04480397 ASM181452v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:25.397 urine Illumina The Genome Institute at Washington University 104.0x 99.78 0.44 99.99 0.04 GCF_001814525.1 LTUR01 2467 2532 0 8 4 52 1 Corynebacterium_hesseae_homd_HMT_445 GCA_001814645.1 HMT-681 HMSC076D04 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC076D04 26 2321240 59.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/645/GCA_001814645.1_ASM181464v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300134 1739484 SAMN04480404 ASM181464v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:25.643 sputum Illumina The Genome Institute at Washington University 106.0x 99.33 0 100 0.03 GCF_001814645.1 LTUL01 1799 1864 1864 13 4 47 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001814645.1 HMT-681 HMSC076D04 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC076D04 26 2321240 59.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/645/GCA_001814645.1_ASM181464v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300134 1739484 SAMN04480404 ASM181464v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:25.643 sputum Illumina The Genome Institute at Washington University 106.0x 99.33 0 100 0.03 GCF_001814645.1 LTUL01 1799 1864 1864 13 4 47 1 Rothia_mucilaginosa_HMT_147_681 GCA_001814655.1 HMT-587 HMSC069C01 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa HMSC069C01 35 2416608 53.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/655/GCA_001814655.1_ASM181465v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA300135 1739485 SAMN04480453 ASM181465v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.390 sputum Illumina The Genome Institute at Washington University 165.0x 99.34 0 100 0.08 GCF_001814655.1 LTUK01 2068 2134 2134 12 5 48 1 Rothia_dentocariosa_homd_HMT_587 GCA_001814685.1 HMT-311 HMSC077E09 Named Cultivated Oral (Abundance: High) HMT-311 Segatella oris HMSC077E09 125 3134095 44.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/685/GCA_001814685.1_ASM181468v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oris PRJNA300137 1739487 SAMN04480455 ASM181468v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.457 blood l hand Illumina The Genome Institute at Washington University 101.0x 99.32 0 99.92 0.37 GCF_001814685.1 LTUI01 2645 2714 2714 11 5 51 2 Segatella_oris_homd_HMT_311 GCA_001814885.1 HMT-450 HMSC068G04 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC068G04 67 2793519 61.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/885/GCA_001814885.1_ASM181488v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA300147 1739497 SAMN04480414 ASM181488v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.017 vaginal/rectal Illumina The Genome Institute at Washington University 135.0x 99.78 0 100 0.03 GCF_001814885.1 LTTZ01 2571 2634 0 8 5 49 1 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_001814885.1 HMT-450 HMSC068G04 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC068G04 67 2793519 61.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/885/GCA_001814885.1_ASM181488v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA300147 1739497 SAMN04480414 ASM181488v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.017 vaginal/rectal Illumina The Genome Institute at Washington University 135.0x 99.78 0 100 0.03 GCF_001814885.1 LTTZ01 2571 2634 0 8 5 49 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001814945.1 HMT-034 HMSC066C02 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 HMSC066C02 54 2631066 60.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/945/GCA_001814945.1_ASM181494v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA300150 1739500 SAMN04480417 ASM181494v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.117 urine cvs Illumina The Genome Institute at Washington University 152.0x 99.12 0.66 100 0.28 GCF_001814945.1 LTTW01 2442 2506 0 7 3 53 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_001814945.1 HMT-034 HMSC066C02 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 HMSC066C02 54 2631066 60.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/945/GCA_001814945.1_ASM181494v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA300150 1739500 SAMN04480417 ASM181494v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.117 urine cvs Illumina The Genome Institute at Washington University 152.0x 99.12 0.66 100 0.28 GCF_001814945.1 LTTW01 2442 2506 0 7 3 53 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001814995.1 HMT-681 HMSC066H02 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC066H02 22 2331455 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/995/GCA_001814995.1_ASM181499v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300153 1739503 SAMN04480419 ASM181499v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.183 bronchial washing Illumina The Genome Institute at Washington University 153.0x 99.33 0 100 0.44 GCF_001814995.1 LTTT01 1816 1885 1885 14 6 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001814995.1 HMT-681 HMSC066H02 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC066H02 22 2331455 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/995/GCA_001814995.1_ASM181499v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300153 1739503 SAMN04480419 ASM181499v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.183 bronchial washing Illumina The Genome Institute at Washington University 153.0x 99.33 0 100 0.44 GCF_001814995.1 LTTT01 1816 1885 1885 14 6 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_001815045.1 HMT-411 HMSC065E03 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis HMSC065E03 29 2170715 42.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/045/GCA_001815045.1_ASM181504v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_J PRJNA300155 1739505 SAMN04480422 ASM181504v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.280 Bronchoalveolar lavage Illumina The Genome Institute at Washington University 184.0x 100 0.18 100 0.01 GCF_001815045.1 LTTR01 2030 2109 2109 36 3 39 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001815155.1 HMT-681 HMSC065D09 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC065D09 23 2331353 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/155/GCA_001815155.1_ASM181515v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300161 1739511 SAMN04480428 ASM181515v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.490 Bronchoalveolar lavage Illumina The Genome Institute at Washington University 160.0x 99.33 0 100 0.46 GCF_001815155.1 LTTM01 1817 1885 1885 14 6 47 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001815155.1 HMT-681 HMSC065D09 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC065D09 23 2331353 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/155/GCA_001815155.1_ASM181515v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300161 1739511 SAMN04480428 ASM181515v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.490 Bronchoalveolar lavage Illumina The Genome Institute at Washington University 160.0x 99.33 0 100 0.46 GCF_001815155.1 LTTM01 1817 1885 1885 14 6 47 1 Rothia_mucilaginosa_HMT_147_681 GCA_001815285.1 HMT-587 HMSC065D02 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa HMSC065D02 35 2478701 53.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/285/GCA_001815285.1_ASM181528v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA300169 1739518 SAMN04480436 ASM181528v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.777 sputum induced Illumina The Genome Institute at Washington University 160.0x 99.34 0 100 0.06 GCF_001815285.1 LTTG01 2119 2187 2187 12 5 50 1 Rothia_dentocariosa_homd_HMT_587 GCA_001815315.1 HMT-311 HMSC077E08 Named Cultivated Oral (Abundance: High) HMT-311 Segatella oris HMSC077E08 135 3101169 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/315/GCA_001815315.1_ASM181531v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oris PRJNA300171 1739520 SAMN04480437 ASM181531v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.810 blood l hand Illumina The Genome Institute at Washington University 129.0x 99.32 0 99.93 0.19 GCF_001815315.1 LTTE01 2612 2677 2677 11 3 51 0 Segatella_oris_homd_HMT_311 GCA_001815355.1 HMT-718 HMSC068C11 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae HMSC068C11 25 1904337 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/355/GCA_001815355.1_ASM181535v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp001815355 PRJNA300173 1739522 SAMN04480439 ASM181535v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.877 sputum Illumina The Genome Institute at Washington University 144.0x 99.89 0.08 100 0.16 GCF_001815355.1 LTTC01 1795 1876 1876 24 7 49 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001815375.1 HMT-101 HMSC065C04 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC065C04 48 2314384 48.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/375/GCA_001815375.1_ASM181537v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_D PRJNA300175 1739524 SAMN04480440 ASM181537v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:26.910 sputum Illumina The Genome Institute at Washington University 122.0x 99.7 0.23 100 0.38 GCF_001815375.1 LTTB01 2193 2284 2284 40 3 47 1 Neisseria_perflava_homd_HMT_101 GCA_001815545.1 HMT-577 HMSC073A11 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens HMSC073A11 39 2199832 55.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/545/GCA_001815545.1_ASM181554v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA300186 1739535 SAMN04480449 ASM181554v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.220 abscess l hip Illumina The Genome Institute at Washington University 182.0x 95.8 0.79 99.99 0.19 GCF_001815545.1 LTST01 2035 2094 2094 10 3 45 1 Eikenella_corrodens_homd_HMT_577 GCA_001815615.1 HMT-476 HMSC075C10 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC075C10 62 2227657 49.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/615/GCA_001815615.1_ASM181561v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA300190 1739539 SAMN04480456 ASM181561v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.490 sputum induced Illumina The Genome Institute at Washington University 179.0x 99.92 0 100 0.41 GCF_001815615.1 LTSP01 2104 2175 2175 20 3 47 1 Neisseria_subflava_homd_HMT_476 GCA_001815685.1 HMT-476 HMSC056A03 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC056A03 103 2247105 49.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/685/GCA_001815685.1_ASM181568v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA300195 1739544 SAMN04480460 ASM181568v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.620 trach aspirate Illumina The Genome Institute at Washington University 148.0x 99.92 0 100 0.02 GCF_001815685.1 LTSK01 2170 2259 2259 39 3 46 1 Neisseria_subflava_homd_HMT_476 GCA_001815715.1 HMT-202 HMSC064B11 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum HMSC064B11 119 2401628 26.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/715/GCA_001815715.1_ASM181571v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA300194 1739543 SAMN04480459 ASM181571v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.587 blood central line Illumina The Genome Institute at Washington University 99.0x 100 0 99.99 0.06 GCF_001815715.1 LTSL01 2258 2314 2314 25 2 28 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_001815745.1 HMT-047 HMSC064E07 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC064E07 40 2450517 58.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/745/GCA_001815745.1_ASM181574v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA300196 1739545 SAMN04480461 ASM181574v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.653 cervical Illumina The Genome Institute at Washington University 77.0x 100 0 100 0.53 GCF_001815745.1 LTSJ01 2130 2200 2200 14 3 52 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001815755.1 HMT-681 HMSC061C12 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC061C12 52 2282454 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/755/GCA_001815755.1_ASM181575v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300198 1739547 SAMN04480464 ASM181575v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.753 throat Illumina The Genome Institute at Washington University 123.0x 99.33 0 100 0.1 GCF_001815755.1 LTSI01 1762 1832 1832 14 5 50 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001815755.1 HMT-681 HMSC061C12 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC061C12 52 2282454 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/755/GCA_001815755.1_ASM181575v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA300198 1739547 SAMN04480464 ASM181575v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.753 throat Illumina The Genome Institute at Washington University 123.0x 99.33 0 100 0.1 GCF_001815755.1 LTSI01 1762 1832 1832 14 5 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_001815785.1 HMT-450 HMSC056F09 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC056F09 99 2758830 61.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/785/GCA_001815785.1_ASM181578v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA300199 1739548 SAMN04480463 ASM181578v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.720 urine Illumina The Genome Institute at Washington University 61.0x 99.78 0 99.99 0.03 GCF_001815785.1 LTSH01 2554 2617 0 8 3 51 1 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_001815785.1 HMT-450 HMSC056F09 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC056F09 99 2758830 61.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/785/GCA_001815785.1_ASM181578v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA300199 1739548 SAMN04480463 ASM181578v1 Scaffold Velvet v. 1.1.06 2016-02-08T13:05:27.720 urine Illumina The Genome Institute at Washington University 61.0x 99.78 0 99.99 0.03 GCF_001815785.1 LTSH01 2554 2617 0 8 3 51 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001815865.1 HMT-427 HMSC24B09 Unnamed Cultivated Oral (Abundance: Medium) HMT-427 Abiotrophia sp. HMT-427 HMSC24B09 31 2020784 46.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/815/865/GCA_001815865.1_ASM181586v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;s__Abiotrophia sp001815865 PRJNA269830 1581061 SAMN03436211 ASM181586v1 Scaffold Velvet v. 1.1.04 2015-03-20T18:05:07.547 respiratory Illumina The Genome Institute at Washington University 145.0x 98.46 0 99.01 0.1 GCF_001815865.1 LWPV01 1837 1901 1901 20 3 40 1 Abiotrophia_sp_HMT_427_homd_HMT_427 GCA_001836065.1 HMT-450 HMSC035E02 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC035E02 91 2767129 61.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/065/GCA_001836065.1_ASM183606v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA296242 1715114 SAMN04498616 ASM183606v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:20.497 urine Illumina The Genome Institute at Washington University 106.0x 99.78 0 99.99 0.08 GCF_001836065.1 LTRQ01 2526 2589 0 8 4 50 1 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_001836065.1 HMT-450 HMSC035E02 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 HMSC035E02 91 2767129 61.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/065/GCA_001836065.1_ASM183606v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA296242 1715114 SAMN04498616 ASM183606v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:20.497 urine Illumina The Genome Institute at Washington University 106.0x 99.78 0 99.99 0.08 GCF_001836065.1 LTRQ01 2526 2589 0 8 4 50 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_001836225.1 HMT-567 HMSC036D05 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae HMSC036D05 23 2536023 33.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/225/GCA_001836225.1_ASM183622v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA296187 1715059 SAMN04498590 ASM183622v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:19.007 fluid l knee Illumina The Genome Institute at Washington University 158.0x 99.27 0 100 0 GCF_001836225.1 LTRJ01 2359 2457 2457 66 3 28 1 Staphylococcus_caprae_homd_HMT_567 GCA_001836315.1 HMT-101 HMSC056A04 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC056A04 37 2239820 48.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/315/GCA_001836315.1_ASM183631v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp001838135 PRJNA296174 1715047 SAMN04498579 ASM183631v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:18.200 trach aspirate Illumina The Genome Institute at Washington University 139.0x 99.92 0.11 100 0.01 GCF_001836315.1 LTRE01 2077 2166 2166 38 3 47 1 Neisseria_perflava_homd_HMT_101 GCA_001836705.1 HMT-476 HMSC061B04 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC061B04 77 2267122 49.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/705/GCA_001836705.1_ASM183670v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA296268 1715140 SAMN04498636 ASM183670v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:21.597 sputum Illumina The Genome Institute at Washington University 155.0x 100 0 100 0 GCF_001836705.1 LTQL01 2144 2218 2218 18 3 52 1 Neisseria_subflava_homd_HMT_476 GCA_001836735.1 HMT-681 HMSC061D12 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC061D12 13 2336535 59.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/735/GCA_001836735.1_ASM183673v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJNA296289 1715161 SAMN04498645 ASM183673v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:21.937 sputum Illumina The Genome Institute at Washington University 171.0x 99.33 0 100 0.02 GCF_001836735.1 LTQJ01 1798 1866 1866 13 6 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001836735.1 HMT-681 HMSC061D12 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC061D12 13 2336535 59.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/735/GCA_001836735.1_ASM183673v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJNA296289 1715161 SAMN04498645 ASM183673v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:21.937 sputum Illumina The Genome Institute at Washington University 171.0x 99.33 0 100 0.02 GCF_001836735.1 LTQJ01 1798 1866 1866 13 6 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_001836795.1 HMT-476 HMSC061H08 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC061H08 54 2240849 49.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/795/GCA_001836795.1_ASM183679v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA296282 1715154 SAMN04498643 ASM183679v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:21.860 sputum Illumina The Genome Institute at Washington University 118.0x 100 0 100 0.47 GCF_001836795.1 LTQH01 2106 2184 2184 24 3 50 1 Neisseria_subflava_homd_HMT_476 GCA_001836905.1 HMT-147 HMSC062F03 Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 HMSC062F03 42 2271942 61.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/905/GCA_001836905.1_ASM183690v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA296281 1715153 SAMN04498642 ASM183690v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:21.820 sputum Illumina The Genome Institute at Washington University 147.0x 99.11 0 100 0.03 GCF_001836905.1 LTQB01 1750 1816 1816 12 6 47 1 Rothia_mucilaginosa_clade_147_homd_HMT_147 GCA_001836905.1 HMT-147 HMSC062F03 Named Cultivated Oral (Abundance: Low) HMT-147 Rothia mucilaginosa clade-147 HMSC062F03 42 2271942 61.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/836/905/GCA_001836905.1_ASM183690v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_A PRJNA296281 1715153 SAMN04498642 ASM183690v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:21.820 sputum Illumina The Genome Institute at Washington University 147.0x 99.11 0 100 0.03 GCF_001836905.1 LTQB01 1750 1816 1816 12 6 47 1 Rothia_mucilaginosa_HMT_147_681 GCA_001837185.1 HMT-610 HMSC064D07 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens HMSC064D07 71 2259121 49.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/185/GCA_001837185.1_ASM183718v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_C PRJNA296215 1715087 SAMN04498601 ASM183718v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:19.520 sputum Illumina The Genome Institute at Washington University 120.0x 99.7 0.45 100 0.65 GCF_001837185.1 LTPQ01 2133 2204 2204 19 3 48 1 Neisseria_flavescens_homd_HMT_610 GCA_001837245.1 HMT-476 HMSC064F03 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC064F03 63 2254869 49.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/245/GCA_001837245.1_ASM183724v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA296164 1715037 SAMN04498574 ASM183724v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:17.840 sputum Illumina The Genome Institute at Washington University 178.0x 99.32 0 100 0.57 GCF_001837245.1 LTPO01 2139 2210 2210 25 3 42 1 Neisseria_subflava_homd_HMT_476 GCA_001837265.1 HMT-681 HMSC064F07 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC064F07 12 2267615 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/265/GCA_001837265.1_ASM183726v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA296319 1715191 SAMN04498655 ASM183726v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:22.457 sputum Illumina The Genome Institute at Washington University 176.0x 99.33 0 100 0.03 GCF_001837265.1 LTPN01 1733 1802 1802 13 6 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001837265.1 HMT-681 HMSC064F07 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC064F07 12 2267615 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/265/GCA_001837265.1_ASM183726v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA296319 1715191 SAMN04498655 ASM183726v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:22.457 sputum Illumina The Genome Institute at Washington University 176.0x 99.33 0 100 0.03 GCF_001837265.1 LTPN01 1733 1802 1802 13 6 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_001837295.1 HMT-681 HMSC065C03 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC065C03 42 2352774 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/295/GCA_001837295.1_ASM183729v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJNA296212 1715084 SAMN04498657 ASM183729v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:22.553 sputum Illumina The Genome Institute at Washington University 153.0x 99.33 0 100 0.02 GCF_001837295.1 LTPL01 1796 1864 1864 14 6 47 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001837295.1 HMT-681 HMSC065C03 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HMSC065C03 42 2352774 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/295/GCA_001837295.1_ASM183729v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJNA296212 1715084 SAMN04498657 ASM183729v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:22.553 sputum Illumina The Genome Institute at Washington University 153.0x 99.33 0 100 0.02 GCF_001837295.1 LTPL01 1796 1864 1864 14 6 47 1 Rothia_mucilaginosa_HMT_147_681 GCA_001837365.1 HMT-101 HMSC066F04 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC066F04 53 2217149 49.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/365/GCA_001837365.1_ASM183736v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp001838135 PRJNA296276 1715148 SAMN04498639 ASM183736v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:21.713 trachael aspirate Illumina The Genome Institute at Washington University 163.0x 100 0 100 0.04 GCF_001837365.1 LTPI01 2041 2131 2131 38 3 48 1 Neisseria_perflava_homd_HMT_101 GCA_001837375.1 HMT-476 HMSC066H01 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC066H01 28 2147245 49.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/375/GCA_001837375.1_ASM183737v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA296158 1715031 SAMN04498571 ASM183737v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:17.567 trachael aspirate Illumina The Genome Institute at Washington University 135.0x 99.92 0.11 100 0.01 GCF_001837375.1 LTPH01 1994 2069 2069 22 3 49 1 Neisseria_subflava_homd_HMT_476 GCA_001837635.1 HMT-476 HMSC070H10 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC070H10 45 2171707 49.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/635/GCA_001837635.1_ASM183763v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA296213 1715085 SAMN04498603 ASM183763v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:19.603 throat Illumina The Genome Institute at Washington University 184.0x 99.92 0.11 100 0.48 GCF_001837635.1 LTOV01 2039 2113 2113 22 3 48 1 Neisseria_subflava_homd_HMT_476 GCA_001837705.1 HMT-047 HMSC072B08 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC072B08 43 2489149 58.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/705/GCA_001837705.1_ASM183770v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA296264 1715136 SAMN04498632 ASM183770v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:21.463 vaginal/rectal Illumina The Genome Institute at Washington University 160.0x 100 0.6 100 1.43 GCF_001837705.1 LTOS01 2153 2225 2225 14 4 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001837775.1 HMT-031 HMSC073H12 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC073H12 19 2473368 58.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/775/GCA_001837775.1_ASM183777v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA296315 1715187 SAMN04498696 ASM183777v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:25.177 vaginal/rectal Illumina The Genome Institute at Washington University 155.0x 100 0 100 0.01 GCF_001837775.1 LTOO01 2131 2198 2198 12 2 52 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_001837905.1 HMT-411 HMSC076C09 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis HMSC076C09 48 2216453 41.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/905/GCA_001837905.1_ASM183790v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA296311 1715183 SAMN04498651 ASM183790v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:22.273 sputum Illumina The Genome Institute at Washington University 127.0x 99.86 0.75 100 0 GCF_001837905.1 LTOI01 2082 2163 2163 40 3 37 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_001838065.1 HMT-476 HMSC078C12 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HMSC078C12 47 2242214 49.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/065/GCA_001838065.1_ASM183806v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA296203 1715075 SAMN04498659 ASM183806v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:22.653 sputum Illumina The Genome Institute at Washington University 126.0x 99.55 0.45 100 0.03 GCF_001838065.1 LTOB01 2105 2196 2196 37 3 50 1 Neisseria_subflava_homd_HMT_476 GCA_001838135.1 HMT-101 HMSC078H04 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava HMSC078H04 39 2238578 49.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/135/GCA_001838135.1_ASM183813v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp001838135 PRJNA296167 1715040 SAMN04498575 ASM183813v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:17.910 abdominal fluid Illumina The Genome Institute at Washington University 136.0x 100 0 100 0.02 GCF_001838135.1 LTNY01 2100 2187 2187 33 3 50 1 Neisseria_perflava_homd_HMT_101 GCA_001838205.1 HMT-047 HMSC072B09 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC072B09 64 2484283 58.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/205/GCA_001838205.1_ASM183820v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA300139 1739489 SAMN04498697 ASM183820v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:25.213 vaginal/rectal Illumina The Genome Institute at Washington University 134.0x 100 0 100 0.12 GCF_001838205.1 LTNU01 2139 2207 2207 13 3 51 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001838215.1 HMT-047 HMSC061H03 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC061H03 47 2482958 58.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/215/GCA_001838215.1_ASM183821v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA299941 1739291 SAMN04498854 ASM183821v1 Scaffold Velvet v. 1.1.06 2016-02-18T17:05:21.843 cervical Illumina The Genome Institute at Washington University 105.0x 100 0 100 0.03 GCF_001838215.1 LTNV01 2124 2193 2193 14 4 50 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001838285.1 HMT-031 HMSC074C03 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC074C03 73 2540944 58.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/285/GCA_001838285.1_ASM183828v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA300001 1739351 SAMN04498679 ASM183828v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:23.873 vaginal/rectal Illumina The Genome Institute at Washington University 157.0x 100 0 100 0.07 GCF_001838285.1 LTNR01 2197 2267 2267 12 3 54 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_001838295.1 HMT-031 HMSC074C04 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC074C04 15 2442160 58.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/295/GCA_001838295.1_ASM183829v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA300164 1739514 SAMN04498698 ASM183829v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:25.267 vaginal/rectal Illumina The Genome Institute at Washington University 139.0x 96.97 0 96.97 0.01 GCF_001838295.1 LWPW01 2176 2245 2245 14 1 53 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_001838325.1 HMT-031 HMSC074C05 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum HMSC074C05 25 2409687 58.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/325/GCA_001838325.1_ASM183832v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA300185 1739534 SAMN04498690 ASM183832v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:24.667 genital Illumina The Genome Institute at Washington University 165.0x 100 0 100 0.06 GCF_001838325.1 LTNQ01 2077 2145 2145 13 2 52 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_001838365.1 HMT-682 HMSC064F04 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa HMSC064F04 141 2485776 51.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/365/GCA_001838365.1_ASM183836v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA300090 1739440 SAMN04498684 ASM183836v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:24.250 sputum Illumina The Genome Institute at Washington University 160.0x 99.92 0.45 100 0.01 GCF_001838365.1 LTNO01 2252 2318 2318 16 3 46 1 Neisseria_mucosa_homd_HMT_682 GCA_001838375.1 HMT-682 HMSC070E12 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa HMSC070E12 149 2437021 51.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/375/GCA_001838375.1_ASM183837v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA300178 1739527 SAMN04498689 ASM183837v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:24.593 tracheal aspirate Illumina The Genome Institute at Washington University 164.0x 99.7 0.06 99.99 0 GCF_001838375.1 LTYO01 2141 2216 2216 17 3 54 1 Neisseria_mucosa_homd_HMT_682 GCA_001838535.1 HMT-543 HMSC034F03 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus HMSC034F03 86 2085882 38.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/535/GCA_001838535.1_ASM183853v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA299937 1739287 SAMN04498675 ASM183853v1 Scaffold Velvet v. 1.1.06 2016-02-18T16:05:23.590 urine Illumina The Genome Institute at Washington University 118.0x 99.88 0.83 100 0.27 GCF_001838535.1 LTYL01 2085 2163 2163 37 3 37 1 Streptococcus_anginosus_homd_HMT_543 GCA_001838575.1 HMT-543 HMSC034B03 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus HMSC034B03 23 1916995 38.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/575/GCA_001838575.1_ASM183857v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA296241 1715113 SAMN04498855 ASM183857v1 Scaffold Velvet v. 1.1.06 2016-02-18T17:05:21.880 urine Illumina The Genome Institute at Washington University 208.0x 99.76 0 99.97 0.14 GCF_001838575.1 LTNG01 1896 1979 1979 39 3 40 1 Streptococcus_anginosus_homd_HMT_543 GCA_001838615.1 HMT-718 HMSC61B11 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae HMSC61B11 71 2150396 39.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/615/GCA_001838615.1_ASM183861v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AD PRJNA274534 1608882 SAMN04498882 ASM183861v1 Scaffold Velvet v. 1.1.06 2016-02-18T17:05:22.993 abdominal Illumina The Genome Institute at Washington University 186.0x 99.89 0 100 0 GCF_001838615.1 LWQR01 2020 2090 2090 25 3 41 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001838635.1 HMT-718 HMSC71H05 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae HMSC71H05 21 2024521 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/635/GCA_001838635.1_ASM183863v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_R PRJNA274550 1608898 SAMN04498897 ASM183863v1 Scaffold Velvet v. 1.1.06 2016-02-18T17:05:23.587 joint Illumina The Genome Institute at Washington University 197.0x 99.89 0.09 100 0 GCF_001838635.1 LTND01 1934 2011 2011 25 5 46 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001839105.1 HMT-567 HMSC62A08 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae HMSC62A08 51 2587345 33.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/839/105/GCA_001839105.1_ASM183910v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA274535 1608883 SAMN04498883 ASM183910v1 Scaffold Velvet v. 1.1.06 2016-02-18T17:05:23.030 skin Illumina The Genome Institute at Washington University 155.0x 97.95 0.74 99.57 0.03 GCF_001839105.1 LTMG01 2454 2550 2550 62 1 32 1 Staphylococcus_caprae_homd_HMT_567 GCA_001839505.1 HMT-728 HMSC34B10 Named Cultivated Oral (Abundance: Medium) HMT-728 Streptococcus peroris HMSC34B10 18 1720476 38.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/839/505/GCA_001839505.1_ASM183950v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus peroris PRJNA274508 1608856 SAMN04498864 ASM183950v1 Scaffold Velvet v. 1.1.06 2016-02-18T17:05:22.217 respiratory Illumina The Genome Institute at Washington University 232.0x 98.31 0.34 99.99 0.17 GCF_001839505.1 LTLL01 1694 1771 1771 38 3 35 1 Streptococcus_peroris_homd_HMT_728 GCA_001854465.1 HMT-200 AB1 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii AB1 60 2143397 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/854/465/GCA_001854465.1_ASM185446v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA338014 851 SAMN05912803 ASM185446v1 Scaffold SPAdes v. 3.8 2016-10-14T20:16:04.966 USA: Seattle sinus tissue Illumina UW 28.0x 92.4 100 0.56 99.98 0.37 GCF_001854465.1 MLQO01 1946 2019 2019 17 10 45 1 Fusobacterium_vincentii_homd_HMT_200 GCA_001856725.1 HMT-641 NML-Hia-1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NML-Hia-1 1 1829217 38.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/856/725/GCA_001856725.1_ASM185672v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA328024 727 SAMN05714732 ASM185672v1 Complete Genome Celera Assembler v. APRIL-2016 2016-08-29T17:29:08.337 Canada: Manitoba blood PacBio Public Health Agency of Canada 436.0x 97.45 99.67 0.98 100 1.63 GCF_001856725.1 1715 1827 1827 33 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_001866575.1 HMT-552 T13 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum T13 15 2463971 63.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/866/575/GCA_001866575.1_ASM186657v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA298214 33010 SAMN04156671 ASM186657v1 Contig SOAPdenovo v. 2012 2015-10-08T11:48:11.000 Sweden: Orebro Illumina HiSeq Aarhus University 50.0x 98.72 99.34 0 100 0.1 GCF_001866575.1 LLJH01 2240 2312 2312 21 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_001866585.1 HMT-552 T15 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum T15 14 2462788 63.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/866/585/GCA_001866585.1_ASM186658v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA298219 33010 SAMN04156673 ASM186658v1 Contig SOAPdenovo v. 2012 2015-10-08T12:02:10.000 Sweden: Orebro Illumina HiSeq Aarhus University 50.0x 98.71 99.34 0 100 0.11 GCF_001866585.1 LLJJ01 2243 2315 2315 21 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_001866625.1 HMT-552 T14 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum T14 9 2522071 63.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/866/625/GCA_001866625.1_ASM186662v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA298218 33010 SAMN04156672 ASM186662v1 Contig SOAPdenovo v. 2012 2015-10-08T11:56:08.000 Sweden: Orebro Illumina HiSeq Aarhus University 50.0x 98.74 100 0 100 0.09 GCF_001866625.1 LLJI01 2296 2368 2368 21 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_001875655.1 HMT-634 ATCC 49162 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-634 Enterobacter hormaechei ATCC 49162 4 4890213 55.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/875/655/GCA_001875655.1_ASM187565v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter hormaechei PRJNA343410 888063 SAMN05787340 ASM187565v1 Scaffold HGAP v. 3.0 2016-09-19T04:58:02.760 NA PacBio Zhejiang Sci-Tech University 68.0x 99.99 99.97 0.4 100 0.59 GCF_001875655.1 MKEQ01 4592 4846 4846 132 27 94 1 Enterobacter_hormaechei_homd_HMT_634 GCA_001885595.1 HMT-707 SC15-3744 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SC15-3744 13 1934082 41.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/885/595/GCA_001885595.1_ASM188559v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA328451 1303 SAMN05371533 ASM188559v1 Contig SPAdes v. 3.5.0 2016-07-11T10:39:02.857 Canada: Alberta unknown Illumina MiSeq Public Health Agency of Canada 88.0x 94.65 99.87 0.27 99.99 0.04 GCF_001885595.1 MBDM01 1812 1917 1917 41 7 56 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_001885595.1 HMT-707 SC15-3744 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SC15-3744 13 1934082 41.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/885/595/GCA_001885595.1_ASM188559v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA328451 1303 SAMN05371533 ASM188559v1 Contig SPAdes v. 3.5.0 2016-07-11T10:39:02.857 Canada: Alberta unknown Illumina MiSeq Public Health Agency of Canada 88.0x 94.65 99.87 0.27 99.99 0.04 GCF_001885595.1 MBDM01 1812 1917 1917 41 7 56 1 Streptococcus_oralis_HMT_071_398_707 GCA_001885845.1 HMT-801 DSM 20680 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-801 Enterococcus casseliflavus DSM 20680 72 3472622 42.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/885/845/GCA_001885845.1_ASM188584v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D;s__Enterococcus_D casseliflavus PRJNA270385 37734 SAMN03267167 ASM188584v1 Scaffold SOAPdenovo v. 2 2014-12-16T21:26:47.433 missing plants Illumina MiSeq; Illumina HiSeq Inner Mongolia Agricultural University 100.0x 99.99 99.25 0.38 100 1.12 GCF_001885845.1 JXKK01 3304 3394 3394 53 3 33 1 Enterococcus_casseliflavus_homd_HMT_801 GCA_001885995.1 HMT-803 DSM 15952 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-803 Enterococcus italicus DSM 15952 120 2322207 39.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/885/995/GCA_001885995.1_ASM188599v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G;s__Enterococcus_G italicus PRJNA270385 888064 SAMN03267176 ASM188599v1 Contig SOAPdenovo v. 2 2014-12-16T21:26:48.163 Italy dairy products Illumina MiSeq; Illumina HiSeq Inner Mongolia Agricultural University 100.0x 99.96 99.01 0 99.98 0.17 GCF_001885995.1 JXKT01 2238 2318 2318 42 2 35 1 Enterococcus_italicus_homd_HMT_803 GCA_001886235.1 HMT-802 DSM 20726 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-802 Enterococcus saccharolyticus DSM 20726 50 2557288 36.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/886/235/GCA_001886235.1_ASM188623v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_F;s__Enterococcus_F saccharolyticus PRJNA270385 41997 SAMN03267186 ASM188623v1 Scaffold SOAPdenovo v. 2 2014-12-16T21:26:49.270 missing straw bedding Illumina MiSeq; Illumina HiSeq Inner Mongolia Agricultural University 100.0x 99.98 99.34 0.66 100 0.01 GCF_001886235.1 JXLD01 2553 2645 2645 57 2 32 1 Enterococcus_saccharolyticus_homd_HMT_802 GCA_001886655.1 HMT-023 HK171 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-023 Delftia acidovorans HK171 1 6430384 66.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/886/655/GCA_001886655.1_ASM188665v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas acidovorans PRJNA353889 1920191 SAMN06027798 ASM188665v1 Complete Genome other v. HGAP3 2016-11-16T22:57:03.213 South Korea: Daejeon Tomato roots PacBio Korea Research Institute of Chemical Technology 223.0x 99.85 0.21 100 0.02 GCF_001886655.1 5661 5851 5851 89 15 85 1 Delftia_acidovorans_homd_HMT_023 GCA_001889125.1 HMT-339 YFY001 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-339 Janibacter indicus YFY001 1 3401189 71.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/889/125/GCA_001889125.1_ASM188912v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter;s__Janibacter indicus PRJNA300616 857417 SAMN04226596 ASM188912v1 Complete Genome SMRTAnalysis v. 2.3.0 HGAP2 2015-10-30T07:46:13.000 China: Nanchang blood PacBio RS II system The First Affiliated Hospital of NanChang University 97.27 99.28 0 99.99 0.51 GCF_001889125.1 3259 3340 3340 21 6 53 1 Janibacter_indicus_homd_HMT_339 GCA_001895805.1 HMT-822 I0004000-1 Named Cultivated Pathogen (Abundance: Scarce) HMT-822 Mycobacterium tuberculosis I0004000-1 1 4365724 65.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/895/805/GCA_001895805.1_ASM189580v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium tuberculosis PRJNA343736 1773 SAMN06010122 ASM189580v1 Complete Genome software developed in-house v. Sep-2016 2016-11-10T15:06:10.267 Peru: Lima patient Illumina HiSeq CETR, HSPH, Megan Murray, director 158.2x 99.94 99.94 0 100 0.73 GCF_001895805.1 4032 4088 0 0 3 52 1 Mycobacterium_tuberculosis_homd_HMT_822 GCA_001896045.1 HMT-734 SP49 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SP49 1 2206644 39.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/896/045/GCA_001896045.1_ASM189604v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA352462 1313 SAMN05981365 ASM189604v1 Complete Genome HGAP SMRTPortal v. 2.3.0 2016-11-04T06:23:05.510 Germany: Aachen blood PacBio; Illumina MiSeq Helmholtz-Centre for Infection Research 186.0x 98.56 99.76 0.25 100 0.15 GCF_001896045.1 2211 2361 2361 76 12 61 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_001896065.1 HMT-734 SP61 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SP61 1 2071812 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/896/065/GCA_001896065.1_ASM189606v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA353112 1313 SAMN06009945 ASM189606v1 Complete Genome HGAP SMRTPortal v. 2.3.0 2016-11-10T13:36:04.493 Germany: Aachen thorax drainage PacBio; Illumina MiSeq Helmholtz-Centre for Infection Research 200.0x 98.62 99.02 0.2 100 0.18 GCF_001896065.1 2031 2182 2182 80 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_001896085.1 HMT-734 SP64 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SP64 1 2073113 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/896/085/GCA_001896085.1_ASM189608v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA353116 1313 SAMN06009955 ASM189608v1 Complete Genome HGAP SMRTPortal v. 2.3.0 2016-11-10T13:46:06.200 Germany: Aachen auditory canal PacBio; Illumina MiSeq Helmholtz-Centre for Infection Research 114.0x 98.6 99.42 0.2 100 0.18 GCF_001896085.1 2032 2183 2183 80 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_001897265.1 HMT-185 71-23 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-185 Microbacterium ginsengisoli 71-23 55 3008215 70.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/897/265/GCA_001897265.1_ASM189726v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium ginsengisoli PRJNA279279 1895787 SAMN05660528 ASM189726v1 Scaffold idba_ud v. 10.06.2014s 2016-08-25T14:32:20.546 South Africa: University of Ca Ammonium sulfate bioreactor Illumina HiSeq2500 Banfield Lab, University of California, Berkeley 10.0x 98.11 2.69 99.75 4.83 GCF_001897265.1 MKSL01 2864 2931 2931 9 1 56 1 Microbacterium_ginsengisoli_homd_HMT_185 GCA_001908715.1 HMT-731 CAV1217 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-731 Klebsiella pneumoniae CAV1217 5 5379063 57.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/908/715/GCA_001908715.1_ASM190871v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella pneumoniae PRJNA246471 573 SAMN03024585 ASM190871v1 Complete Genome HGAP v. unspecified 2014-09-10T05:02:51.973 USA:Virginia urine PacBio University of Oxford 200.0x 99.81 97.22 0.32 100 0.17 GCF_001908715.1 5105 5361 5361 144 25 86 1 Klebsiella_pneumoniae_homd_HMT_731 GCA_001908895.1 HMT-731 Kp_Goe_821588 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-731 Klebsiella pneumoniae Kp_Goe_821588 3 5526153 57.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/908/895/GCA_001908895.1_ASM190889v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella pneumoniae PRJNA329409 573 SAMN05412457 ASM190889v1 Complete Genome SMRT Analysis Software v. 2.3.0 2016-07-16T18:26:04.730 Germany: Goettingen anal swab PacBio University Medical Center Goettingen 160.0x 99.78 100 0.02 100 0.04 GCF_001908895.1 5181 5442 5442 148 25 87 1 Klebsiella_pneumoniae_homd_HMT_731 GCA_001913265.1 HMT-591 DSM 44123 Named Cultivated Pathogen (Abundance: Scarce) HMT-591 Corynebacterium diphtheriae DSM 44123 28 2371600 53.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/913/265/GCA_001913265.1_CdipDSM44123 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae PRJNA296455 1720349 SAMN04099181 CdipDSM44123 Contig Spades v. 3.0.0 2015-09-21T06:03:09.000 Not available Not available Illumina MiSeq Northumbria University 235.0x 99.99 99.67 0.11 99.99 0.46 GCF_001913265.1 LJXR01 2233 2303 2303 10 6 53 1 Corynebacterium_diphtheriae_homd_HMT_591 GCA_001914075.1 HMT-681 0528Y_59_11 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 0528Y_59_11 21 2294456 59.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/914/075/GCA_001914075.1_ASM191407v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA327106 43675 SAMN05509321 ASM191407v1 Scaffold IDBA_UD v. 1.1.1 2016-08-03T14:53:55.050 USA: Pittsburgh, Magee-Womens Infant 2 DOL 28 oral Illumina HiSeq None 11.0x 94.46 99.33 0 100 0.41 GCF_001914075.1 MKYA01 1745 1811 1811 12 4 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_001914075.1 HMT-681 0528Y_59_11 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 0528Y_59_11 21 2294456 59.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/914/075/GCA_001914075.1_ASM191407v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA327106 43675 SAMN05509321 ASM191407v1 Scaffold IDBA_UD v. 1.1.1 2016-08-03T14:53:55.050 USA: Pittsburgh, Magee-Womens Infant 2 DOL 28 oral Illumina HiSeq None 11.0x 94.46 99.33 0 100 0.41 GCF_001914075.1 MKYA01 1745 1811 1811 12 4 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_001929365.1 HMT-169 F4D1 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 F4D1 65 3025390 68.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/929/365/GCA_001929365.1_ASM192936v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA347929 544580 SAMN05898719 ASM192936v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.507 United Kingdom: London Plaque (caries -) Illumina GAIIx; 454 Kings College London 12.0x 95.19 99.29 0.47 100 0.08 GCF_001929365.1 MSQE01 2495 2566 2566 12 3 55 1 Actinomyces_oris_clade_169_homd_HMT_169 GCA_001929365.1 HMT-169 F4D1 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 F4D1 65 3025390 68.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/929/365/GCA_001929365.1_ASM192936v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA347929 544580 SAMN05898719 ASM192936v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.507 United Kingdom: London Plaque (caries -) Illumina GAIIx; 454 Kings College London 12.0x 95.19 99.29 0.47 100 0.08 GCF_001929365.1 MSQE01 2495 2566 2566 12 3 55 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001929375.1 HMT-079 S64C Named Cultivated Oral (Abundance: Medium) HMT-079 Actinomyces oris clade-079 S64C 95 3113698 68.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/929/375/GCA_001929375.1_ASM192937v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_B PRJNA347929 544580 SAMN05898733 ASM192937v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:07.340 United Kingdom: London Plaque (caries -) Illumina GAIIx; 454 Kings College London 12.0x 92.7 99.53 1.42 100 0.24 GCF_001929375.1 MSGO01 2569 2643 2643 14 3 56 1 Actinomyces_oris_clade_079_homd_HMT_079 GCA_001929375.1 HMT-079 S64C Named Cultivated Oral (Abundance: Medium) HMT-079 Actinomyces oris clade-079 S64C 95 3113698 68.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/929/375/GCA_001929375.1_ASM192937v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_B PRJNA347929 544580 SAMN05898733 ASM192937v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:07.340 United Kingdom: London Plaque (caries -) Illumina GAIIx; 454 Kings College London 12.0x 92.7 99.53 1.42 100 0.24 GCF_001929375.1 MSGO01 2569 2643 2643 14 3 56 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001936235.1 HMT-839 SNUV360 Named Cultivated Vaginal (Abundance: High) HMT-839 Lactobacillus jensenii SNUV360 1 1672949 34.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/936/235/GCA_001936235.1_ASM193623v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus jensenii PRJNA357991 109790 SAMN06163224 ASM193623v1 Complete Genome HGAP3 v. 3.0 2016-12-19T07:09:03.220 South Korea: Seoul vaginal environment PacBio KoBioLabs, Inc. 420.0x 99.91 98.83 0 99.96 0.13 GCF_001936235.1 1595 1684 1684 18 12 58 1 Lactobacillus_jensenii_homd_HMT_839 GCA_001937365.1 HMT-079 R21091 Named Cultivated Oral (Abundance: Medium) HMT-079 Actinomyces oris clade-079 R21091 87 3046442 68.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/365/GCA_001937365.1_ASM193736v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_B PRJNA347929 544580 SAMN05898732 ASM193736v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:07.263 United Kingdom: Cardiff Cerebral abscess Illumina GAIIx; 454 Kings College London 12.0x 92.63 100 0.63 100 0.11 GCF_001937365.1 MSKK01 2495 2563 2563 15 0 52 1 Actinomyces_oris_clade_079_homd_HMT_079 GCA_001937365.1 HMT-079 R21091 Named Cultivated Oral (Abundance: Medium) HMT-079 Actinomyces oris clade-079 R21091 87 3046442 68.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/365/GCA_001937365.1_ASM193736v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_B PRJNA347929 544580 SAMN05898732 ASM193736v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:07.263 United Kingdom: Cardiff Cerebral abscess Illumina GAIIx; 454 Kings College London 12.0x 92.63 100 0.63 100 0.11 GCF_001937365.1 MSKK01 2495 2563 2563 15 0 52 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937385.1 HMT-144 MMRCO6-1 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 MMRCO6-1 86 3250757 68.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/385/GCA_001937385.1_ASM193738v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898728 ASM193738v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:07.037 United Kingdom: London Soft lesion Illumina GAIIx; 454 Kings College London 12.0x 92.91 98.58 0.47 100 0.31 GCF_001937385.1 MSKM01 2693 2758 2758 11 2 51 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_001937385.1 HMT-144 MMRCO6-1 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 MMRCO6-1 86 3250757 68.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/385/GCA_001937385.1_ASM193738v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898728 ASM193738v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:07.037 United Kingdom: London Soft lesion Illumina GAIIx; 454 Kings College London 12.0x 92.91 98.58 0.47 100 0.31 GCF_001937385.1 MSKM01 2693 2758 2758 11 2 51 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937415.1 HMT-144 M48-1B-1 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 M48-1B-1 90 3243259 68.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/415/GCA_001937415.1_ASM193741v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898727 ASM193741v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.980 United Kingdom: London Plaque (caries +) Illumina GAIIx; 454 Kings College London 12.0x 92.85 99.53 0.47 100 0.19 GCF_001937415.1 MSKN01 2676 2749 2749 14 5 53 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_001937415.1 HMT-144 M48-1B-1 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 M48-1B-1 90 3243259 68.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/415/GCA_001937415.1_ASM193741v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898727 ASM193741v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.980 United Kingdom: London Plaque (caries +) Illumina GAIIx; 454 Kings College London 12.0x 92.85 99.53 0.47 100 0.19 GCF_001937415.1 MSKN01 2676 2749 2749 14 5 53 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937425.1 HMT-144 F28B1 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 F28B1 103 3278855 68.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/425/GCA_001937425.1_ASM193742v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898726 ASM193742v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.920 United Kingdom: London Plaque (caries +) Illumina GAII; 454 Kings College London 12.0x 92.83 99.53 0.71 100 0.18 GCF_001937425.1 MSKO01 2703 2774 2774 14 3 53 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_001937425.1 HMT-144 F28B1 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 F28B1 103 3278855 68.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/425/GCA_001937425.1_ASM193742v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898726 ASM193742v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.920 United Kingdom: London Plaque (caries +) Illumina GAII; 454 Kings College London 12.0x 92.83 99.53 0.71 100 0.18 GCF_001937425.1 MSKO01 2703 2774 2774 14 3 53 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937445.1 HMT-144 WE8B-23 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 WE8B-23 88 3229440 68.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/445/GCA_001937445.1_ASM193744v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898722 ASM193744v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.717 United Kingdom: London Plaque (caries +) Illumina GAIIx; 454 Kings College London 12.0x 92.96 100 0.95 100 0.34 GCF_001937445.1 MSKS01 2633 2706 2706 15 3 54 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_001937445.1 HMT-144 WE8B-23 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 WE8B-23 88 3229440 68.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/445/GCA_001937445.1_ASM193744v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898722 ASM193744v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.717 United Kingdom: London Plaque (caries +) Illumina GAIIx; 454 Kings College London 12.0x 92.96 100 0.95 100 0.34 GCF_001937445.1 MSKS01 2633 2706 2706 15 3 54 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937475.1 HMT-176 R19039 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii R19039 56 3197928 67.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/475/GCA_001937475.1_ASM193747v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898714 ASM193747v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.136 United Kingdom: Cardiff liver abscess Illumina GAIIx; 454 Kings College London 12.0x 96.86 100 0.47 99.99 0.23 GCF_001937475.1 MSKZ01 2693 2762 2762 14 0 54 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001937485.1 HMT-144 CCUG 34286 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 CCUG 34286 91 3266793 68.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/485/GCA_001937485.1_ASM193748v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898725 ASM193748v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.870 Sweden Gingival crevice Illumina GAIIx; 454 Kings College London 12.0x 92.82 100 0.95 100 0.05 GCF_001937485.1 MSKP01 2641 2712 2712 14 1 55 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_001937485.1 HMT-144 CCUG 34286 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 CCUG 34286 91 3266793 68.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/485/GCA_001937485.1_ASM193748v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898725 ASM193748v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.870 Sweden Gingival crevice Illumina GAIIx; 454 Kings College London 12.0x 92.82 100 0.95 100 0.05 GCF_001937485.1 MSKP01 2641 2712 2712 14 1 55 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937505.1 HMT-144 R11372 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 R11372 74 3282203 67.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/505/GCA_001937505.1_ASM193750v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898723 ASM193750v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.757 United Kingdom: Cardiff Intra-uterine contraceptive devices (IUCD) Illumina GAIIx; 454 Kings College London 12.0x 92.79 100 1.04 100 0.09 GCF_001937505.1 MSKR01 2681 2755 2755 14 1 58 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_001937505.1 HMT-144 R11372 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 R11372 74 3282203 67.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/505/GCA_001937505.1_ASM193750v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898723 ASM193750v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.757 United Kingdom: Cardiff Intra-uterine contraceptive devices (IUCD) Illumina GAIIx; 454 Kings College London 12.0x 92.79 100 1.04 100 0.09 GCF_001937505.1 MSKR01 2681 2755 2755 14 1 58 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937535.1 HMT-893 R23275 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 R23275 96 3115162 68.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/535/GCA_001937535.1_ASM193753v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA347929 544580 SAMN05898720 ASM193753v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.557 United Kingdom: Cardiff Blood culture Illumina GAIIx; 454 Kings College London 12.0x 96.47 97.16 0.95 99.49 0.09 GCF_001937535.1 MSKU01 2547 2609 2609 14 3 44 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_001937535.1 HMT-893 R23275 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 R23275 96 3115162 68.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/535/GCA_001937535.1_ASM193753v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA347929 544580 SAMN05898720 ASM193753v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.557 United Kingdom: Cardiff Blood culture Illumina GAIIx; 454 Kings College London 12.0x 96.47 97.16 0.95 99.49 0.09 GCF_001937535.1 MSKU01 2547 2609 2609 14 3 44 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937545.1 HMT-169 W11-1-1 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 W11-1-1 45 2976384 68.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/545/GCA_001937545.1_ASM193754v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA347929 544580 SAMN05898718 ASM193754v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.440 United Kingdom: London Plaque (caries +) Illumina GAIIx; 454 Kings College London 12.0x 95.11 98.77 1.42 100 0.17 GCF_001937545.1 MSKV01 2438 2506 2506 13 1 53 1 Actinomyces_oris_clade_169_homd_HMT_169 GCA_001937545.1 HMT-169 W11-1-1 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 W11-1-1 45 2976384 68.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/545/GCA_001937545.1_ASM193754v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA347929 544580 SAMN05898718 ASM193754v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.440 United Kingdom: London Plaque (caries +) Illumina GAIIx; 454 Kings College London 12.0x 95.11 98.77 1.42 100 0.17 GCF_001937545.1 MSKV01 2438 2506 2506 13 1 53 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937555.1 HMT-893 G53E Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 G53E 36 3039485 68.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/555/GCA_001937555.1_ASM193755v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA347929 544580 SAMN05898717 ASM193755v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.357 United Kingdom: London Plaque (caries -) Illumina GAIIx; 454 Kings College London 12.0x 96.06 100 0.59 100 0.07 GCF_001937555.1 MSKW01 2490 2557 2557 14 4 48 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_001937555.1 HMT-893 G53E Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 G53E 36 3039485 68.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/555/GCA_001937555.1_ASM193755v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA347929 544580 SAMN05898717 ASM193755v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.357 United Kingdom: London Plaque (caries -) Illumina GAIIx; 454 Kings College London 12.0x 96.06 100 0.59 100 0.07 GCF_001937555.1 MSKW01 2490 2557 2557 14 4 48 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937595.1 HMT-176 W8-2-3 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii W8-2-3 49 3218937 67.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/595/GCA_001937595.1_ASM193759v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898715 ASM193759v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.227 United Kingdom: London Plaque (caries +) Illumina GAIIx; 454 Kings College London 12.0x 96.76 100 0.47 99.99 0.27 GCF_001937595.1 MSKY01 2721 2791 2791 15 1 53 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001937605.1 HMT-176 R13240 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii R13240 32 3226920 67.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/605/GCA_001937605.1_ASM193760v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898713 ASM193760v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.057 United Kingdom: Cardiff Subphrenic abscess Illumina GAIIx; 454 Kings College London 12.0x 96.9 100 0.47 99.99 0.3 GCF_001937605.1 MSLA01 2719 2794 2794 14 3 57 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001937615.1 HMT-176 R8152 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii R8152 44 3183492 67.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/615/GCA_001937615.1_ASM193761v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898712 ASM193761v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:05.987 United Kingdom: Cardiff Intra-uterine contraceptive devices (IUCD) Illumina GAIIx; 454 Kings College London 12.0x 96.86 100 0.47 100 0.27 GCF_001937615.1 MSLB01 2656 2729 2729 14 3 55 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001937655.1 HMT-079 S24V Named Cultivated Oral (Abundance: Medium) HMT-079 Actinomyces oris clade-079 S24V 290 3045360 68.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/655/GCA_001937655.1_ASM193765v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_B PRJNA347929 544580 SAMN05898731 ASM193765v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:07.207 United Kingdom: London Plaque (caries -) Illumina GAIIx; 454 Kings College London 12.0x 92.72 91.87 1.42 91.32 0.27 GCF_001937655.1 MSKI01 2651 2724 2724 16 5 51 1 Actinomyces_oris_clade_079_homd_HMT_079 GCA_001937655.1 HMT-079 S24V Named Cultivated Oral (Abundance: Medium) HMT-079 Actinomyces oris clade-079 S24V 290 3045360 68.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/655/GCA_001937655.1_ASM193765v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_B PRJNA347929 544580 SAMN05898731 ASM193765v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:07.207 United Kingdom: London Plaque (caries -) Illumina GAIIx; 454 Kings College London 12.0x 92.72 91.87 1.42 91.32 0.27 GCF_001937655.1 MSKI01 2651 2724 2724 16 5 51 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937675.1 HMT-171 CCUG 33920 Named Cultivated Oral (Abundance: High) HMT-171 Actinomyces oris clade-171 CCUG 33920 45 2966880 68.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/675/GCA_001937675.1_ASM193767v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_E PRJNA347929 544580 SAMN05898730 ASM193767v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:07.147 Sweden Plaque Illumina GAIIx; 454 Kings College London 12.0x 91.4 100 0.47 99.99 0.07 GCF_001937675.1 MSKJ01 2448 2514 2514 13 0 52 1 Actinomyces_oris_clade_171_homd_HMT_171 GCA_001937675.1 HMT-171 CCUG 33920 Named Cultivated Oral (Abundance: High) HMT-171 Actinomyces oris clade-171 CCUG 33920 45 2966880 68.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/675/GCA_001937675.1_ASM193767v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_E PRJNA347929 544580 SAMN05898730 ASM193767v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:07.147 Sweden Plaque Illumina GAIIx; 454 Kings College London 12.0x 91.4 100 0.47 99.99 0.07 GCF_001937675.1 MSKJ01 2448 2514 2514 13 0 52 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937715.1 HMT-893 A7A-1 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 A7A-1 42 3104690 68.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/715/GCA_001937715.1_ASM193771v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA347929 544580 SAMN05898721 ASM193771v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.643 United Kingdom: London Leathery lesion Illumina GAIIx; 454 Kings College London 12.0x 97.67 100 0.47 100 0.17 GCF_001937715.1 MSKT01 2525 2594 2594 15 3 50 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_001937715.1 HMT-893 A7A-1 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 A7A-1 42 3104690 68.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/715/GCA_001937715.1_ASM193771v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA347929 544580 SAMN05898721 ASM193771v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.643 United Kingdom: London Leathery lesion Illumina GAIIx; 454 Kings College London 12.0x 97.67 100 0.47 100 0.17 GCF_001937715.1 MSKT01 2525 2594 2594 15 3 50 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937725.1 HMT-144 A19A-1 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 A19A-1 118 3283870 68.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/725/GCA_001937725.1_ASM193772v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898724 ASM193772v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.807 United Kingdom: London Leathery lesion Illumina GAIIx; 454 Kings College London 12.0x 92.75 99.53 0.47 100 0.18 GCF_001937725.1 MSKQ01 2673 2745 2745 15 0 56 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_001937725.1 HMT-144 A19A-1 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 A19A-1 118 3283870 68.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/725/GCA_001937725.1_ASM193772v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA347929 544580 SAMN05898724 ASM193772v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.807 United Kingdom: London Leathery lesion Illumina GAIIx; 454 Kings College London 12.0x 92.75 99.53 0.47 100 0.18 GCF_001937725.1 MSKQ01 2673 2745 2745 15 0 56 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_001937735.1 HMT-176 WE6B-3 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii WE6B-3 58 3228491 67.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/937/735/GCA_001937735.1_ASM193773v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898716 ASM193773v1 Scaffold CLC Denovo Assembly v. CLC 5.1 2016-10-12T09:54:06.300 United Kingdom: London Plaque (caries +) Illumina GAIIx; 454 Kings College London 12.0x 96.77 99.53 0.47 100 0.47 GCF_001937735.1 MSKX01 2725 2797 2797 15 3 53 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001938785.1 HMT-613 9610 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia 9610 79 3201941 47.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/938/785/GCA_001938785.1_ASM193878v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJNA340021 28112 SAMN05629351 ASM193878v1 Scaffold SPAdes v. 3.9.0 2016-08-24T19:27:03.310 USA: Seattle human oral cavity Illumina MiSeq University of Washington 30.0x 98.68 98.91 0 99.88 0 GCF_001938785.1 MEHX01 2666 2738 2738 22 5 44 1 Tannerella_forsythia_homd_HMT_613 GCA_001949885.1 HMT-718 65114 B Hi-3 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 65114 B Hi-3 21 1978057 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/949/885/GCA_001949885.1_ASM194988v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA327273 729 SAMN06013565 ASM194988v1 Scaffold Microbial Genome Assembler Pipeline v. 1.0 2016-11-12T17:16:04.203 Australia Unspecified Illumina HiSeq Menzies School of Health Research 310.0x 93.2 99.84 0.18 100 0.79 GCF_001949885.1 MPJK01 1908 1996 1996 36 4 47 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001949895.1 HMT-718 60884 B Hi-2 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae 60884 B Hi-2 13 1872293 39.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/949/895/GCA_001949895.1_ASM194989v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA327273 729 SAMN06013564 ASM194989v1 Scaffold Microbial Genome Assembler Pipeline v. 1.0 2016-11-12T17:03:04.962 Australia Unspecified Illumina HiSeq Menzies School of Health Research 310.0x 93.12 99.89 0.05 100 0.1 GCF_001949895.1 MPJJ01 1790 1868 1868 26 4 47 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_001953155.1 HMT-868 GV37 Named Cultivated Vaginal (Abundance: High) HMT-868 Gardnerella swidsinskii GV37 1 1746718 41.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/953/155/GCA_001953155.1_ASM195315v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium swidsinskii PRJNA360037 2792979 SAMN06199463 ASM195315v1 Complete Genome Meraculous2 v. 2.0.3 2017-01-04T04:00:06.600 France: Paris blood culture Illumina Institute of Biotechnology, Vilnius University 116.0x 98.18 99.93 0 99.98 0.66 GCF_001953155.1 1409 1474 1474 13 6 45 1 Gardnerella_swidsinskii_homd_HMT_868 GCA_001953935.1 HMT-643 strain 17 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia strain 17 2 2736315 43.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/953/935/GCA_001953935.1_ASM195393v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA313956 28131 SAMN04529095 ASM195393v1 Complete Genome Celera Assembler v. June 2016; HGAP v. 2.3 2016-03-02T14:30:24.203 Japan periodontal pocket PacBio The Forsyth Institute 200.0x 96.54 99.32 0.59 99.9 0.27 GCF_001953935.1 2357 2431 2431 10 12 51 1 Prevotella_intermedia_homd_HMT_643 GCA_001953955.1 HMT-643 ATCC 25611 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia ATCC 25611 2 2674170 43.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/953/955/GCA_001953955.1_ASM195395v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA313956 1122984 SAMN04529094 ASM195395v1 Complete Genome Celera Assembler v. June 2016; HGAP v. 2.3 2016-03-02T14:30:24.000 USA Empyema PacBio The Forsyth Institute 200.0x 99.99 99.32 0.77 99.92 1.04 GCF_001953955.1 2270 2348 2348 11 13 53 1 Prevotella_intermedia_homd_HMT_643 GCA_001955865.1 HMT-921 FSL R5-0817 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-921 Paenibacillus glucanolyticus FSL R5-0817 118 7128183 48.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/955/865/GCA_001955865.1_ASM195586v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus glucanolyticus PRJNA343020 59843 SAMN05929625 ASM195586v1 Contig SPAdes v. 3.6.2 2016-10-20T08:53:06.777 USA milk Illumina HiSeq Cornell University 77.0x 98.99 99.85 0.22 100 0.58 GCF_001955865.1 MRTT01 6620 6769 6769 77 4 67 1 Paenibacillus_glucanolyticus_homd_HMT_921 GCA_001956355.1 HMT-176 F12B1 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii F12B1 73 3191973 67.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/355/GCA_001956355.1_ASM195635v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898711 ASM195635v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.920 United Kingdom: London Plaque (caries +) Illumina GAIIx; 454 Kings College London 12.0x 96.76 100 0.47 100 0.25 GCF_001956355.1 MSRH01 2694 2766 2766 14 3 54 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956365.1 HMT-176 Pn6N Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii Pn6N 53 3155768 67.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/365/GCA_001956365.1_ASM195636v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898709 ASM195636v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.737 Sweden Plaque Illumina GAIIx; 454 Kings College London 12.0x 96.6 100 0.47 99.99 0.07 GCF_001956365.1 MSRJ01 2649 2721 2721 15 3 53 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956415.1 HMT-176 MMRC12-1 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii MMRC12-1 56 3165113 67.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/415/GCA_001956415.1_ASM195641v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898710 ASM195641v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.813 United Kingdom: London Soft lesion Illumina GAIIx; 454 Kings College London 12.0x 96.72 99.29 0.47 99.99 0.13 GCF_001956415.1 MSRI01 2682 2748 2748 14 1 50 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956435.1 HMT-176 F6E1 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii F6E1 174 3041208 67.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/435/GCA_001956435.1_ASM195643v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898708 ASM195643v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.663 United Kingdom: London Plaque (carries -) Illumina GAIIx; 454 Kings College London 12.0x 96.76 93.88 1.07 88.21 0.95 GCF_001956435.1 MSRK01 2698 2765 2765 12 1 53 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956445.1 HMT-176 CCUG 37599 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii CCUG 37599 57 3159810 67.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/445/GCA_001956445.1_ASM195644v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898707 ASM195644v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.583 Sweden: University of Goteborg cerebrospinal fluid Illumina GAIIx; 454 Kings College London 12.0x 96.66 99.76 0.56 99.99 0.09 GCF_001956445.1 MSRL01 2686 2755 2755 14 0 54 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956475.1 HMT-176 T23P-1 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii T23P-1 104 3068220 68.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/475/GCA_001956475.1_ASM195647v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898706 ASM195647v1 Contig CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.490 United Kingdom: London Plaque (carries -) Illumina GAIIx; 454 Kings College London 12.0x 98.06 99.53 1.24 99.99 0.21 GCF_001956475.1 MSRM01 2551 2613 2613 14 1 47 0 Actinomyces_naeslundii_homd_HMT_176 GCA_001956485.1 HMT-176 S44D Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii S44D 52 3128129 67.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/485/GCA_001956485.1_ASM195648v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898704 ASM195648v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.340 United Kingdom: London Plaque (carries -) Illumina GAIIx; 454 Kings College London 12.0x 98.2 100 0.95 99.99 0.2 GCF_001956485.1 MSRO01 2601 2671 2671 15 3 51 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956505.1 HMT-176 R24330 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii R24330 61 3139836 67.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/505/GCA_001956505.1_ASM195650v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898702 ASM195650v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.113 United Kingdom: Cardiff Intra-uterine contraceptive device Illumina GAIIx; 454 Kings College London 12.0x 98.86 100 0.75 99.98 0.21 GCF_001956505.1 MSRQ01 2611 2683 2683 15 2 54 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956515.1 HMT-176 S43L Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii S43L 34 3122782 68.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/515/GCA_001956515.1_ASM195651v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898703 ASM195651v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.243 United Kingdom: London Plaque (carries -) Illumina GAIIx; 454 Kings College London 12.0x 98.68 100 0.47 99.9 0.17 GCF_001956515.1 MSRP01 2603 2673 2673 15 1 53 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956555.1 HMT-176 MB-1 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii MB-1 41 3144414 67.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/555/GCA_001956555.1_ASM195655v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898700 ASM195655v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:04.930 United Kingdom: London Plaque (carries +) Illumina GAIIx; 454 Kings College London 12.0x 98.45 97.63 0.47 99.86 0.15 GCF_001956555.1 MSRS01 2587 2659 2659 15 3 53 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956565.1 HMT-176 CCUG 35334 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii CCUG 35334 47 3151111 67.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/565/GCA_001956565.1_ASM195656v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898698 ASM195656v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:04.660 Sweden: University of Goteborg blood Illumina GAIIx; 454 Kings College London 12.0x 98.49 100 0.47 99.96 0.28 GCF_001956565.1 MSRU01 2635 2700 2700 15 1 48 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956575.1 HMT-176 S65A Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii S65A 33 3229861 67.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/575/GCA_001956575.1_ASM195657v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898705 ASM195657v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.420 United Kingdom: London Plaque (carries -) Illumina GAIIx; 454 Kings College London 12.0x 98.76 99.95 2.37 99.93 0.33 GCF_001956575.1 MSRN01 2696 2763 2763 15 0 51 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956585.1 HMT-176 NCTC 10301 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii NCTC 10301 47 3119690 67.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/585/GCA_001956585.1_ASM195658v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898701 ASM195658v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:05.020 Sweden Plaque Illumina GAIIx; 454 Kings College London 12.0x 99.99 100 0.47 99.94 0.16 GCF_001956585.1 MSRR01 2600 2667 2667 16 1 49 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956635.1 HMT-176 G127B Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii G127B 42 3140302 68.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/635/GCA_001956635.1_ASM195663v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA347929 1655 SAMN05898699 ASM195663v1 Scaffold CLC Denovo Assembly v. 5.1 2016-10-12T09:54:04.777 United Kingdom: London Plaque (carries -) Illumina GAIIx; 454 Kings College London 12.0x 98.58 99.53 1.07 99.99 0.32 GCF_001956635.1 MSRT01 2632 2697 2697 15 0 49 1 Actinomyces_naeslundii_homd_HMT_176 GCA_001956655.2 HMT-601 14.1.R1 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 14.1.R1 4 2606667 32.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/655/GCA_001956655.2_ASM195665v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA358169 1282 SAMN06167133 ASM195665v2 Complete Genome HGAP3 v. 2016 2016-12-20T10:13:03.167 Denmark: Aarhus PacBio Aarhus University 372.0x 97.11 GCF_001956655.1 2523 2683 2683 80 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_001956755.1 HMT-550 SJTUF_J27 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus SJTUF_J27 1 2804759 32.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/755/GCA_001956755.1_ASM195675v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA353940 1280 SAMN06200256 ASM195675v1 Complete Genome CLC NGS Cell v. v 9.5; SPAdes v. v 3.9 2017-01-04T09:46:05.015 China: Shanghai Seaweed Illumina MiSeq Eastern Regional Research Center -ARS-USDA 331.0x 97.87 99.4 0.25 100 0.15 GCF_001956755.1 2584 2780 2780 117 17 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_001974965.1 HMT-669 38277 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 38277 1 2264278 51.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/974/965/GCA_001974965.1_ASM197496v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA305279 487 SAMN04321475 ASM197496v1 Complete Genome HGAP v. 3 2015-12-07T12:26:03.000 Canada throat PacBio Public Health Agency of Canada 202.0x 97.32 99.75 0.19 100 0 GCF_001974965.1 2123 2217 2217 20 12 61 1 Neisseria_meningitidis_homd_HMT_669 GCA_001975925.1 HMT-047 ICIS 9 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum ICIS 9 181 2587830 58.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/975/925/GCA_001975925.1_ASM197592v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA339674 43765 SAMN06233788 ASM197592v1 Contig SPAdes v. 3.9.0 2017-01-16T05:31:03.460 Russia female urogenital tract Illumina MiSeq Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences 22.0x 95.44 100 0 100 0.31 GCF_001975925.1 MTPT01 2223 2296 2296 13 6 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_001982785.1 HMT-745 CCUG 4207 Named Cultivated Pathogen (Abundance: Scarce) HMT-745 Streptococcus pyogenes CCUG 4207 45 1863165 38.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/982/785/GCA_001982785.1_ASM198278v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes PRJNA302716 1314 SAMN05912995 ASM198278v1 Scaffold CLC Genomic Workbench v. 9.5.1 2016-10-16T10:32:05.276 United Kingdom: Manchester missing Illumina HiSeq 2500 TAILORED-Treatment project 647.0x 99.98 100 0 100 0.58 GCF_001982785.1 MLGC01 1844 1935 1935 50 3 37 1 Streptococcus_pyogenes_homd_HMT_745 GCA_001983955.1 HMT-707 S.MIT/ORALIS-351 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis S.MIT/ORALIS-351 1 1966910 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/983/955/GCA_001983955.1_ASM198395v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA358614 1303 SAMN06179980 ASM198395v1 Complete Genome SMRT v. 2.2;HGAP3 v. Sep 2014 2016-12-23T11:57:05.340 Spain: Barcelona blood PacBio University of California San Francisco 23.5x 94.49 99.87 0.35 100 0.05 GCF_001983955.1 1848 1964 1964 44 12 59 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_001983955.1 HMT-707 S.MIT/ORALIS-351 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis S.MIT/ORALIS-351 1 1966910 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/983/955/GCA_001983955.1_ASM198395v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA358614 1303 SAMN06179980 ASM198395v1 Complete Genome SMRT v. 2.2;HGAP3 v. Sep 2014 2016-12-23T11:57:05.340 Spain: Barcelona blood PacBio University of California San Francisco 23.5x 94.49 99.87 0.35 100 0.05 GCF_001983955.1 1848 1964 1964 44 12 59 1 Streptococcus_oralis_HMT_071_398_707 GCA_001985445.1 HMT-828 H784 Named Cultivated Pathogen (Abundance: Scarce) HMT-828 Bordetella pertussis H784 1 4106396 67.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/985/445/GCA_001985445.1_ASM198544v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella;s__Bordetella pertussis PRJNA279196 520 SAMN03455357 ASM198544v1 Complete Genome HGAP v. 3 2015-04-01T09:05:36.050 USA: OR missing Illumina MiSeq; PacBio Centers for Disease Control and Prevention 110.0x 99.87 100 0.47 99.92 0.4 GCF_001985445.1 3892 3981 3981 15 9 64 1 Bordetella_pertussis_homd_HMT_828 GCA_001988495.1 HMT-828 J300 Named Cultivated Pathogen (Abundance: Scarce) HMT-828 Bordetella pertussis J300 1 4105330 67.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/988/495/GCA_001988495.1_ASM198849v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella;s__Bordetella pertussis PRJNA279196 520 SAMN04383600 ASM198849v1 Complete Genome HGAP v. 3 2016-01-04T13:08:05.407 USA: CO missing PacBio RSII; Illumina HiSeq Centers for Disease Control and Prevention 87.0x 99.87 100 0.47 99.91 0.46 GCF_001988495.1 3895 3984 3984 15 9 64 1 Bordetella_pertussis_homd_HMT_828 GCA_001997185.1 HMT-663 ATCC 13637 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-663 Stenotrophomonas maltophilia ATCC 13637 182 4951541 66.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/997/185/GCA_001997185.1_ASM199718v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas maltophilia PRJNA341407 40324 SAMN05721779 ASM199718v1 Scaffold CLCbio Genomic Workbench v. 8.0.2 2016-08-31T18:50:06.773 missing missing Illumina MiSeq California Department of Public Health 55.0x 99.97 100 0.98 100 0.03 GCF_001997185.1 MTGD01 4527 4645 4645 39 5 73 1 Stenotrophomonas_maltophilia_homd_HMT_663 GCA_001997265.1 HMT-833 CDPH_C53 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis CDPH_C53 20 1879987 41.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/997/265/GCA_001997265.1_ASM199726v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA341407 480 SAMN05721781 ASM199726v1 Contig CLCbio Genomic Workbench v. 8.0.2 2016-08-31T18:50:06.877 missing missing Illumina MiSeq California Department of Public Health 106.0x 99.22 99.73 0.27 100 0.01 GCF_001997265.1 MTGF01 1706 1763 1763 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_001999385.1 HMT-047 ATCC 43734 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium ATCC 43734 111 2447019 61.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/999/385/GCA_001999385.1_ASM199938v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium PRJNA341407 38289 SAMN05721786 ASM199938v1 Scaffold CLCbio Genomic Workbench v. 8.0.2 2016-08-31T18:50:07.153 missing missing Illumina MiSeq California Department of Public Health 70.0x 99.99 100 0.92 99.97 0.09 GCF_001999385.1 MTGK01 2138 2200 0 6 4 51 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_002003685.1 HMT-634 HHS 22 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-634 Enterobacter hormaechei HHS 22 85 4679119 55.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/003/685/GCA_002003685.1_ASM200368v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter hormaechei_C PRJNA252799 246796 SAMN03159271 ASM200368v1 Contig Newbler v. 2.8 2014-11-03T04:57:33.980 India: Himalayan mountain rang water 454 Centre for Cellular and Molecular Biology 18.0x 99.44 0.46 100 0.19 GCF_002003685.1 MPZO01 4317 4515 4515 120 7 70 1 Enterobacter_hormaechei_homd_HMT_634 GCA_002005185.1 HMT-161 UTDB1-3 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula UTDB1-3 1 2178518 38.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/005/185/GCA_002005185.1_ASM200518v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella sp032483415 PRJNA373880 29466 SAMN06317777 ASM200518v1 Complete Genome Celera Assembler v. 8.3 2017-02-09T11:24:03.168 USA: Houston subgingival plaque PacBio Rice University 100.0x 96.33 100 0 99.99 0.21 GCF_002005185.1 1952 2035 2035 21 12 49 1 Veillonella_parvula_homd_HMT_161 GCA_002005545.1 HMT-677 321A Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis 321A 6 2110680 40.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/005/545/GCA_002005545.1_ASM200554v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_I PRJNA268403 28037 SAMN03219950 ASM200554v1 Scaffold SOAPdenovo v. 1.0 2014-11-25T01:55:49.910 China pharyngeal swabs Illumina HiSeq Xinqiao Hospital of Third military medical university 154.0x 93.88 99.87 0.2 99.99 0 GCF_002005545.1 LBMT01 1942 2077 2077 50 15 69 1 Streptococcus_mitis_homd_HMT_677 GCA_002005795.1 HMT-813 15S00348 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum 15S00348 3 2121027 39.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/005/795/GCA_002005795.1_ASM200579v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA362210 29394 SAMN06236401 ASM200579v1 Contig HGAP v. 3.0 2017-01-17T14:50:05.523 USA: California, Santa Rosa missing PacBio California Department of Public Health 167.3x 97.6 97.78 1.9 98.35 4.4 GCF_002005795.1 MUYF01 2160 2311 2311 75 17 58 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_002014755.1 HMT-677 CCUG 31611 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis CCUG 31611 14 1847883 40.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/014/755/GCA_002014755.1_ASM201475v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA302716 28037 SAMN06286552 ASM201475v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-01T05:00:02.990 Sweden Oral cavity Illumina MiSeq TAILORED-Treatment project 226.0x 99.99 99.42 0.2 99.98 0.01 GCF_002014755.1 MUYN01 1719 1817 1817 48 3 46 1 Streptococcus_mitis_homd_HMT_677 GCA_002014765.1 HMT-154 CCUG 9405 Named Cultivated Nasal (Abundance: Medium) HMT-154 Moraxella lincolnii CCUG 9405 29 2076923 42.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/014/765/GCA_002014765.1_ASM201476v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella_C;s__Moraxella_C lincolnii PRJNA302716 90241 SAMN06291427 ASM201476v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-02T16:32:04.483 Sweden: Vastra Gotaland, Gothe Human nasopharynx Illumina MiSeq TAILORED-Treatment project 224.0x 94.79 0 100 0.03 GCF_002014765.1 MUYT01 1781 1836 1836 8 3 43 1 GCA_002014795.1 HMT-677 CCUG 63687 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis CCUG 63687 9 2039754 39.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/014/795/GCA_002014795.1_ASM201479v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AQ PRJNA302716 28037 SAMN06286559 ASM201479v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-01T05:40:07.256 Sweden: Jonkoping Human blood Illumina MiSeq TAILORED-Treatment project 210.0x 94.24 99.82 0.24 100 0.18 GCF_002014795.1 MUYO01 1962 2063 2063 52 3 45 1 Streptococcus_mitis_homd_HMT_677 GCA_002014875.1 HMT-677 CCUG 61082 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis CCUG 61082 26 1989191 39.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/014/875/GCA_002014875.1_ASM201487v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA302716 28037 SAMN06302341 ASM201487v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-06T12:39:05.423 Sweden: Linkoping sputum Illumina MiSeq TAILORED-Treatment project 110.0x 95.54 99.78 0.2 100 0.02 GCF_002014875.1 MUXS01 1886 1984 1984 49 3 45 1 Streptococcus_mitis_homd_HMT_677 GCA_002014885.1 HMT-707 CCUG 13229 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CCUG 13229 11 1910194 41.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/014/885/GCA_002014885.1_ASM201488v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA302716 1303 SAMN06299363 ASM201488v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-06T10:42:02.680 Sweden mouth Illumina MiSeq TAILORED-Treatment project 169.0x 99.99 99.47 0.2 100 0.03 GCF_002014885.1 MUXP01 1791 1877 1877 38 3 44 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002014885.1 HMT-707 CCUG 13229 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CCUG 13229 11 1910194 41.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/014/885/GCA_002014885.1_ASM201488v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA302716 1303 SAMN06299363 ASM201488v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-06T10:42:02.680 Sweden mouth Illumina MiSeq TAILORED-Treatment project 169.0x 99.99 99.47 0.2 100 0.03 GCF_002014885.1 MUXP01 1791 1877 1877 38 3 44 1 Streptococcus_oralis_HMT_071_398_707 GCA_002014925.1 HMT-425 CCUG 62647 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 62647 75 2115191 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/014/925/GCA_002014925.1_ASM201492v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN06299414 ASM201492v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-06T11:13:04.496 Denmark: Aarhus pharynx, healthy adolescent Illumina MiSeq TAILORED-Treatment project 138.0x 98.84 99.82 0.2 99.99 0.11 GCF_002014925.1 MUXQ01 2044 2162 2162 71 3 43 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_002014955.1 HMT-425 CCUG 63747 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 63747 89 2177524 39.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/014/955/GCA_002014955.1_ASM201495v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN06302302 ASM201495v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-06T12:15:05.870 Sweden: Vastra Gotaland, Boras missing Illumina MiSeq TAILORED-Treatment project 445.0x 98.79 99.74 0.2 99.99 0.05 GCF_002014955.1 MUXR01 2113 2232 2232 74 3 41 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_002015035.1 HMT-945 CCUG 3716 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus CCUG 3716 26 2039014 40.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/015/035/GCA_002015035.1_ASM201503v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus PRJNA302716 735 SAMN06308710 ASM201503v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-06T17:29:04.870 USA: Maryland missing Illumina MiSeq TAILORED-Treatment project 67.0x 99.99 99.43 0.3 100 0.01 GCF_002015035.1 MUXY01 1943 2025 2025 26 4 51 1 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_002015045.1 HMT-035 CCUG 3718 Named Cultivated Oral (Abundance: High) HMT-035 Haemophilus paraphrohaemolyticus CCUG 3718 29 2057591 40.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/015/045/GCA_002015045.1_ASM201504v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A paraphrohaemolyticus PRJNA302716 736 SAMN06308708 ASM201504v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-06T17:25:03.136 United Kingdom: Leeds sputum Illumina MiSeq TAILORED-Treatment project 83.0x 99.43 0.34 100 0 GCF_002015045.1 MUXX01 2000 2086 2086 30 4 51 1 Haemophilus_paraphrohaemolyticus_homd_HMT_035 GCA_002015155.1 HMT-821 CCUG 4438 Named Cultivated Pathogen (Abundance: Scarce) HMT-821 Haemophilus ducreyi CCUG 4438 19 1534707 37.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/015/155/GCA_002015155.1_ASM201515v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B;s__Haemophilus_B ducreyi PRJNA302716 730 SAMN06308731 ASM201515v1 Scaffold CLC Genomic Workbench v. 9.5.1 2017-02-06T17:59:03.330 Viet Nam: Hanoi chancroid Illumina MiSeq TAILORED-Treatment project 86.0x 99.99 99.6 0 100 0.05 GCF_002015155.1 MUYD01 1509 1570 1570 17 4 39 1 Haemophilus_ducreyi_homd_HMT_821 GCA_002022685.1 HMT-001 R1 Named Cultivated Zoonotic Pathogen (Abundance: Scarce) HMT-001 Bartonella schoenbuchensis R1 2 1728487 37.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/022/685/GCA_002022685.1_ASM202268v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Bartonella;s__Bartonella schoenbuchensis PRJNA360985 687861 SAMN06213864 ASM202268v1 Chromosome HGAP v. 2.0 2017-01-09T16:48:05.990 Germany: Schoenbuch blood sample PacBio University of Basel 45.0x 96.99 97.68 0.41 99.98 1.08 GCF_002022685.1 1639 1698 1698 10 6 42 1 Bartonella_schoenbuchensis_homd_HMT_001 GCA_002022745.1 HMT-649 Y92-1009 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica Y92-1009 1 2146723 52.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/022/745/GCA_002022745.1_ASM202274v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA331097 486 SAMN05437355 ASM202274v1 Complete Genome Celera Assembler v. 2015-APR 2016-07-25T08:23:04.880 United Kingdom: Sheffield nasopharynx PacBio; Illumina HiSeq University of Southampton 300.0x 97.18 99.7 0 100 0.05 GCF_002022745.1 1980 2071 2071 18 12 60 1 Neisseria_lactamica_homd_HMT_649 GCA_002026425.1 HMT-076 MMP1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri MMP1 44 2441279 32.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/026/425/GCA_002026425.1_ASM202642v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA304162 1292 SAMN04296377 ASM202642v1 Scaffold GS De Novo Assembler v. 2.7 2015-11-25T12:48:05.073 Russia: Mammoth Mountain in th Ancient permafrost from Mammoth Mountain 454 Karolinska Institutet 60.0x 99.58 99.73 0.06 100 0.03 GCF_002026425.1 LNVI01 2355 2469 2469 49 4 60 1 Staphylococcus_warneri_homd_HMT_076 GCA_002055535.1 HMT-745 NCTC8198 Named Cultivated Pathogen (Abundance: Scarce) HMT-745 Streptococcus pyogenes NCTC8198 1 1914862 38.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/055/535/GCA_002055535.1_NCTC8198 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes PRJEB6403 1314 SAMEA2479569 NCTC8198 Complete Genome 2014-07-01T08:05:47.260 United Kingdom throat SC 100.0x 100 100 0 100 0.6 GCF_002055535.1 1891 2027 2027 50 18 67 1 Streptococcus_pyogenes_homd_HMT_745 GCA_002055685.1 HMT-676 AR_0059 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-676 Proteus mirabilis AR_0059 1 4191021 38.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/055/685/GCA_002055685.1_ASM205568v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus;s__Proteus mirabilis PRJNA292904 584 SAMN04014900 ASM205568v1 Complete Genome HGAP v. 2.3 2015-08-27T16:16:14.000 missing missing PacBio RSII Centers for Disease Control and Prevention 131.0x 99.35 100 0.54 100 0.51 GCF_002055685.1 3801 3981 3981 76 22 81 1 Proteus_mirabilis_homd_HMT_676 GCA_002055965.1 HMT-468 NCIB 3610 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-468 Bacillus subtilis NCIB 3610 2 4299822 43.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/055/965/GCA_002055965.1_ASM205596v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis PRJNA377766 1423 SAMN06472805 ASM205596v1 Complete Genome Celera Assembler v. 8.1 2017-03-02T19:27:04.236 Not applicable Missing PacBio University of Michigan, Ann Arbor 625.0x 99.99 99.81 0.35 100 0.12 GCF_002055965.1 4318 4538 4538 100 30 89 1 Bacillus_subtilis_homd_HMT_468 GCA_002073215.2 HMT-833 FDAARGOS_213 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis FDAARGOS_213 1 1907985 41.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/215/GCA_002073215.2_ASM207321v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA231221 480 SAMN04875550 ASM207321v2 Complete Genome HGAP v. 3 2016-04-20T14:41:09.000 USA:NY resident flora of the nasopharynx PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 13.9x 99.99 99.73 0.27 100 0.05 GCF_002073215.2 1704 1777 1777 10 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_002073235.2 HMT-669 FDAARGOS_214 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis FDAARGOS_214 1 2397461 51.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/235/GCA_002073235.2_ASM207323v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA231221 487 SAMN04875551 ASM207323v2 Complete Genome CA v. 8.2 2016-04-20T14:41:09.000 USA:MD spinal fluid PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 22.3x 97.4 99.75 0.38 100 0.44 GCF_002073235.2 2253 2374 2374 48 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_002073275.2 HMT-669 FDAARGOS_215 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis FDAARGOS_215 1 2305818 51.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/275/GCA_002073275.2_ASM207327v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA231221 487 SAMN04875552 ASM207327v2 Complete Genome HGAP v. 3 2016-04-20T14:41:09.000 USA:MA spinal fluid PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 16.5x 97.31 99.65 0.25 99.99 0.47 GCF_002073275.2 2137 2264 2264 54 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_002073355.2 HMT-644 FDAARGOS_233 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius FDAARGOS_233 1 1914006 37.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/355/GCA_002073355.2_ASM207335v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA231221 1338 SAMN04875570 ASM207335v2 Complete Genome HGAP v. 3 2016-04-20T14:41:11.000 USA:DC abscess PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 18.3x 98.33 100 0 99.99 0.24 GCF_002073355.2 1832 1956 1956 50 12 61 1 Streptococcus_intermedius_homd_HMT_644 GCA_002073395.2 HMT-128 FDAARGOS_222 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis FDAARGOS_222 1 2540323 33.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/395/GCA_002073395.2_ASM207339v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA231221 28035 SAMN04875559 ASM207339v2 Complete Genome HGAP v. 3 2016-04-20T14:41:09.000 France Axillary lymph node PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 15.7x 99.99 99.61 0 100 0.08 GCF_002073395.2 2340 2499 2499 83 16 59 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002073435.2 HMT-622 FDAARGOS_257 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii FDAARGOS_257 1 2222706 40.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/435/GCA_002073435.2_ASM207343v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA231221 1302 SAMN04875583 ASM207343v2 Complete Genome CA v. 8.2 2016-04-20T14:41:12.000 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 24.2x 95.76 100 0 100 0.18 GCF_002073435.2 2096 2195 2195 27 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_002073475.2 HMT-641 FDAARGOS_199 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae FDAARGOS_199 1 1830681 38.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/475/GCA_002073475.2_ASM207347v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA231221 727 SAMN04875536 ASM207347v2 Complete Genome CA v. 8.2 2016-04-20T14:41:07.000 USA:VA human PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 26.6x 97.44 99.67 0.22 100 1.5 GCF_002073475.2 1718 1828 1828 33 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_002073515.2 HMT-755 FDAARGOS_251 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius FDAARGOS_251 2 2311542 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/515/GCA_002073515.2_ASM207351v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA231221 1335 SAMN04875577 ASM207351v2 Complete Genome HGAP v. 3 2016-04-20T14:41:11.000 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 16.0x 87.4 99.6 0.59 99.99 0.92 GCF_002073515.1 2154 2276 2276 35 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_002073555.2 HMT-669 FDAARGOS_211 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis FDAARGOS_211 1 2305805 51.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/555/GCA_002073555.2_ASM207355v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA231221 487 SAMN04875548 ASM207355v2 Complete Genome HGAP v. 3 2016-04-20T14:41:09.000 USA:MA spinal fluid PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 16.7x 97.31 99.46 0.25 99.99 0.47 GCF_002073555.2 2142 2269 2269 54 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_002073575.2 HMT-669 FDAARGOS_209 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis FDAARGOS_209 1 2181232 51.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/575/GCA_002073575.2_ASM207357v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA231221 487 SAMN04875546 ASM207357v2 Complete Genome HGAP v. 3 2016-04-20T14:41:08.000 United Kingdom human PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 16.4x 99.91 99.1 0.21 99.95 0 GCF_002073575.2 2045 2155 2155 37 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_002073595.2 HMT-669 FDAARGOS_210 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis FDAARGOS_210 1 2273276 51.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/595/GCA_002073595.2_ASM207359v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA231221 487 SAMN04875547 ASM207359v2 Complete Genome CA v. 8.2 2016-04-20T14:41:09.000 USA:VA environmental PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 23.8x 97.31 99.75 1.71 100 2.36 GCF_002073595.2 2113 2207 2207 21 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_002073635.2 HMT-104 FDAARGOS_252 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-104 Paracoccus yeei FDAARGOS_252 8 4829607 67.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/635/GCA_002073635.2_ASM207363v2 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus yeei PRJNA231221 147645 SAMN04875578 ASM207363v2 Complete Genome HGAP v. 3 2016-04-20T14:41:11.000 USA:DC Urine suprapubic aspirate PacBio University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 11.7x 98.49 99.62 0 100 1.86 GCF_002073635.2 4644 4740 4740 25 9 61 1 Paracoccus_yeei_homd_HMT_104 GCA_002073675.2 HMT-669 FDAARGOS_212 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis FDAARGOS_212 1 2244886 51.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/675/GCA_002073675.2_ASM207367v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA231221 487 SAMN04875549 ASM207367v2 Complete Genome HGAP v. 3 2016-04-20T14:41:09.000 USA:VA environmental PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 15.8x 97.37 99.62 0.21 99.99 0 GCF_002073675.2 2101 2194 2194 20 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_002073715.2 HMT-682 FDAARGOS_260 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa FDAARGOS_260 1 2783943 50.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/715/GCA_002073715.2_ASM207371v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa PRJNA231221 488 SAMN04875586 ASM207371v2 Complete Genome HGAP v. 3 2016-04-20T14:41:12.000 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 16.0x 99.7 0.34 100 0.04 GCF_002073715.2 2543 2636 2636 20 12 60 1 Neisseria_mucosa_homd_HMT_682 GCA_002073815.2 HMT-755 FDAARGOS_192 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius FDAARGOS_192 3 2435494 39.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/815/GCA_002073815.2_ASM207381v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA231221 1839799 SAMN04875529 ASM207381v2 Complete Genome HGAP v. 3 2016-04-20T14:41:07.000 USA:DC peripheral blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 15.1x 99.68 0.35 100 0.13 GCF_002073815.2 2187 2321 2321 46 18 69 1 Streptococcus_salivarius_homd_HMT_755 GCA_002073835.2 HMT-755 FDAARGOS_259 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius FDAARGOS_259 1 2259318 40.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/073/835/GCA_002073835.2_ASM207383v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA231221 1304 SAMN04875585 ASM207383v2 Complete Genome CA v. 8.2 2016-04-20T14:41:12.000 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 24.9x 95.23 99.55 0.58 99.99 0.09 GCF_002073835.2 2051 2179 2179 41 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_002075815.1 HMT-669 COL-201504-11 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis COL-201504-11 1 2195573 51.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/075/815/GCA_002075815.1_ASM207581v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA319252 487 SAMN05560575 ASM207581v1 Complete Genome HGAP v. 3 2016-08-11T15:37:06.657 USA: Columbus, Ohio urethral swab Illumina MiSeq; PacBio Centers for Disease Control and Prevention 234.4x 97.31 99.72 0.21 99.99 0 GCF_002075815.1 2059 2150 2150 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_002079585.1 HMT-756 DSM 20554 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-756 Ligilactobacillus salivarius DSM 20554 51 1971822 32.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/079/585/GCA_002079585.1_ASM207958v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius PRJNA357984 1624 SAMN06163261 ASM207958v1 Scaffold Velvet v. 1.2.07 2016-12-19T07:45:05.880 missing Illumina HiSeq University College Cork 100.0x 98.16 99.48 0 99.92 0.37 GCF_002079585.1 NBEM01 1933 2015 2015 33 2 46 1 Ligilactobacillus_salivarius_homd_HMT_756 GCA_002080125.1 HMT-833 CCRI-195ME Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis CCRI-195ME 2 1994386 41.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/080/125/GCA_002080125.1_ASM208012v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA350869 480 SAMN05949222 ASM208012v1 Complete Genome HGAP v. July 2014 2016-10-27T22:58:05.093 USA:Ohio middle ear PacBio Griffith University 99.19 99.72 0.28 100 0.01 GCF_002080125.1 1839 1912 1912 10 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_002082765.1 HMT-524 OK5 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica OK5 1 2071952 39.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/082/765/GCA_002082765.1_ASM208276v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA380512 39777 SAMN06644703 ASM208276v1 Complete Genome CLC NGS Cell v. 2.3 2017-03-26T15:29:03.389 USA Illumina MiSeq; Illumina NextSeq University of Oklahoma HSC 157.0x 96.13 100 0 99.99 0.1 GCF_002082765.1 1834 1913 1913 20 12 46 1 Veillonella_atypica_homd_HMT_524 GCA_002083125.2 HMT-545 FDAARGOS_248 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus FDAARGOS_248 5 2406785 42.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/083/125/GCA_002083125.2_ASM208312v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA231221 732 SAMN04875574 ASM208312v2 Contig CA v. 8.2 2016-04-20T14:41:11.000 USA:DC abscess PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 719.0x 96.9 99.66 0.95 100 0.25 GCF_002083125.2 NBTN02 2266 2411 2411 64 20 60 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_002083135.2 HMT-312 FDAARGOS_249 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-312 Aerococcus viridans FDAARGOS_249 1 2003760 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/083/135/GCA_002083135.2_ASM208313v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;s__Aerococcus viridans_C PRJNA231221 1377 SAMN04875575 ASM208313v2 Contig CA v. 8.2 2016-04-20T14:41:11.000 USA:DC peripheral blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 1877.0x 94.62 98.9 1.94 99.97 0 GCF_002083135.2 NBTM02 1776 1887 1887 33 19 58 1 Aerococcus_viridans_homd_HMT_312 GCA_002083175.2 HMT-686 FDAARGOS_258 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans FDAARGOS_258 1 2144124 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/083/175/GCA_002083175.2_ASM208317v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA231221 1309 SAMN04875584 ASM208317v2 Contig CA v. 8.2 2016-04-20T14:41:12.000 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 2244.0x 99.18 99.25 0.96 100 0.19 GCF_002083175.2 NBTK02 1988 2102 2102 32 15 66 1 Streptococcus_mutans_homd_HMT_686 GCA_002087075.1 HMT-425 CCUG 49455 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 49455 86 2172620 39.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/087/075/GCA_002087075.1_ASM208707v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 889205 SAMN06459226 ASM208707v1 Scaffold CLC Genomic Workbench v. 10.0 2017-02-28T11:05:05.550 Canada: Nova Scotia, Halifax Low respiratory tract sample Illumina MiSeq TAILORED-Treatment project 154.0x 99.99 99.42 0.24 99.98 0.03 GCF_002087075.1 MWSM01 2149 2270 2270 76 3 41 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_002087975.1 HMT-601 ATCC 14990 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis ATCC 14990 37 2457519 32.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/087/975/GCA_002087975.1_ASM208797v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA379934 1282 SAMN06624123 ASM208797v1 Scaffold SPAdes v. 3.5 2017-03-21T12:25:09.246 not applicable Illumina MiSeq Loyola University Chicago 296.8x 99.99 99.81 0 99.99 0.05 GCF_002087975.1 NARC01 2240 2390 2390 81 9 59 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_002088015.1 HMT-817 ATCC 33820 Named Cultivated Vaginal (Abundance: High) HMT-817 Lactobacillus crispatus ATCC 33820 129 2069542 36.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/088/015/GCA_002088015.1_ASM208801v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus crispatus PRJNA379934 47770 SAMN06624125 ASM208801v1 Scaffold SPAdes v. 3.5 2017-03-21T12:25:09.686 not applicable Illumina MiSeq Loyola University Chicago 101.4x 99.99 99.03 0.09 99.9 0.08 GCF_002088015.1 NARH01 2017 2123 2123 37 8 60 1 Lactobacillus_crispatus_homd_HMT_817 GCA_002088025.1 HMT-543 ATCC 33397 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus ATCC 33397 9 1904351 38.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/088/025/GCA_002088025.1_ASM208802v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA379934 1000570 SAMN06624126 ASM208802v1 Contig SPAdes v. 3.5 2017-03-21T12:25:09.903 not applicable Illumina MiSeq Loyola University Chicago 468.0x 99.99 100 0 99.97 0.03 GCF_002088025.1 NARD01 1822 1932 1932 56 5 48 1 Streptococcus_anginosus_homd_HMT_543 GCA_002090215.1 HMT-732 S63-tet-R Named Cultivated Pathogen (Abundance: Scarce) HMT-732 Mycoplasmoides pneumoniae S63-tet-R 1 816435 40.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/090/215/GCA_002090215.1_ASM209021v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pneumoniae PRJNA382063 2104 SAMN06699082 ASM209021v1 Complete Genome Newbler v. 2.9 2017-04-07T05:02:05.460 China: Beijing throat swab Illumina MiSeq Affiliated Hospital of Academy of Military Medical Science 40.0x 99.75 99.25 0 99.09 0.11 GCF_002090215.1 1395 1438 1438 2 3 37 1 Mycoplasmoides_pneumoniae_homd_HMT_732 GCA_002091595.1 HMT-612 NBRC 14160 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-612 Pseudomonas fluorescens NBRC 14160 67 6364335 60.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/091/595/GCA_002091595.1_ASM209159v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E fluorescens PRJDB208 1215100 SAMD00018759 ASM209159v1 Contig newbler v. 3.0 2014-07-24T00:00:00.000 United Kingdom 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 128.0x 99.99 99.59 0.66 100 0.01 GCF_002091595.1 BDAA01 5797 5962 5962 99 5 60 1 Pseudomonas_fluorescens_homd_HMT_612 GCA_002091675.1 HMT-344 NBRC 103146 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-344 Pseudomonas luteola NBRC 103146 104 5395279 55.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/091/675/GCA_002091675.1_ASM209167v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B;s__Pseudomonas_B luteola PRJDB214 1215106 SAMD00046930 ASM209167v1 Contig newbler v. 3.0 2016-02-13T01:00:49.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 120.0x 99.62 1.07 100 0.86 GCF_002091675.1 BDAE01 5104 5212 5212 53 3 51 1 Pseudomonas_luteola_homd_HMT_344 GCA_002091815.1 HMT-740 NBRC 13583 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-740 Pseudomonas oleovorans NBRC 13583 123 4870767 62.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/091/815/GCA_002091815.1_ASM209181v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E oleovorans PRJDB245 1218072 SAMD00046935 ASM209181v1 Contig newbler v. 3.0 2016-02-13T01:00:52.000 missing 454 GS-FLX Titanium; Illumina HiSeq 1000 National Institute of Technology and Evaluation 133.0x 99.99 99.84 2.09 100 1.29 GCF_002091815.1 BDAL01 4676 4903 4903 156 8 62 1 Pseudomonas_oleovorans_homd_HMT_740 GCA_002093515.1 HMT-071 AZ_14 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus AZ_14 29 1964273 40.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/093/515/GCA_002093515.1_ASM209351v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_E PRJNA302886 1077464 SAMN04283922 ASM209351v1 Contig Edena v. 3 2015-11-20T11:48:14.000 Switzerland: Zurich blood Illumina MiSeq Genomic Research Laboratory (GRL) 413.0x 93.13 99.77 0.8 99.99 0 GCF_002093515.1 LNVG01 1878 1976 1976 46 5 46 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_002093515.1 HMT-071 AZ_14 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus AZ_14 29 1964273 40.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/093/515/GCA_002093515.1_ASM209351v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_E PRJNA302886 1077464 SAMN04283922 ASM209351v1 Contig Edena v. 3 2015-11-20T11:48:14.000 Switzerland: Zurich blood Illumina MiSeq Genomic Research Laboratory (GRL) 413.0x 93.13 99.77 0.8 99.99 0 GCF_002093515.1 LNVG01 1878 1976 1976 46 5 46 1 Streptococcus_oralis_HMT_071_398_707 GCA_002093575.1 HMT-071 859 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 859 14 2036380 40.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/093/575/GCA_002093575.1_ASM209357v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CH PRJNA302888 1077464 SAMN04283924 ASM209357v1 Contig Edena v. 3 2015-11-20T11:48:14.000 not applicable nasopharynx Illumina MiSeq Genomic Research Laboratory (GRL) 463.0x 93.36 99.87 0.33 100 0.04 GCF_002093575.1 LNVH01 2006 2139 2139 76 4 52 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_002093575.1 HMT-071 859 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 859 14 2036380 40.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/093/575/GCA_002093575.1_ASM209357v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CH PRJNA302888 1077464 SAMN04283924 ASM209357v1 Contig Edena v. 3 2015-11-20T11:48:14.000 not applicable nasopharynx Illumina MiSeq Genomic Research Laboratory (GRL) 463.0x 93.36 99.87 0.33 100 0.04 GCF_002093575.1 LNVH01 2006 2139 2139 76 4 52 1 Streptococcus_oralis_HMT_071_398_707 GCA_002093995.1 HMT-755 34-09 S8 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 34-09 S8 11 2195835 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/093/995/GCA_002093995.1_ASM209399v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA320256 1304 SAMN04942601 ASM209399v1 Contig Velvet v. 1.2.07 2016-05-04T12:06:06.450 Brazil oral cavity, infant (13 months of age) Illumina MiSeq State University of Campinas 10.0x 95.1 99.73 1.09 99.99 0.04 GCF_002093995.1 LXOR01 2031 2107 2107 34 3 38 1 Streptococcus_salivarius_homd_HMT_755 GCA_002094005.1 HMT-755 85-06 S24 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 85-06 S24 13 2255022 39.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/094/005/GCA_002094005.1_ASM209400v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA320256 1304 SAMN04942660 ASM209400v1 Contig Velvet v. 1.2.07 2016-05-04T12:28:04.860 Brazil missing Illumina MiSeq State University of Campinas 10.0x 96.23 99.4 0.15 99.99 0.04 GCF_002094005.1 LXOU01 2066 2142 2142 32 3 40 1 Streptococcus_salivarius_homd_HMT_755 GCA_002094955.1 HMT-755 ATCC 27945 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius ATCC 27945 1 2108274 40.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/094/955/GCA_002094955.1_ASM209495v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA264747 1304 SAMN03140396 ASM209495v1 Complete Genome SMRTportal v. 2.3.0 2014-10-23T17:35:48.613 not collected saliva PacBio Illinois Institute of Technology 449.5x 96.55 99.9 0.15 99.96 0.13 GCF_002094955.1 1885 1999 1999 27 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_002094975.1 HMT-755 ATCC 25975 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius ATCC 25975 2 2326348 39.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/094/975/GCA_002094975.1_ASM209497v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA227252 1304 SAMN02401019 ASM209497v1 Complete Genome SMRTportal v. 2.3.0 2013-11-10T13:02:24.860 saliva PacBio Illinois Institute of Technology 275.4x 95.88 99.72 0.25 99.98 0.25 GCF_002094975.1 2091 2218 2218 40 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_002096075.1 HMT-128 VISLISI_37 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis VISLISI_37 1 2579522 33.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/075/GCA_002096075.1_ASM209607v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA382327 28035 SAMN06703936 ASM209607v1 Chromosome SPAdes v. 2.9.0 2017-04-10T08:58:05.667 France: strasbourg blood culture Illumina HiSeq EA7290 542.0x 99.56 99.61 0 100 0.09 GCF_002096075.1 2415 2560 2560 85 7 52 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002096115.1 HMT-128 VISLISI_21 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis VISLISI_21 1 2546158 33.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/115/GCA_002096115.1_ASM209611v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA382353 28035 SAMN06704636 ASM209611v1 Chromosome SPAdes v. 2.9.0 2017-04-10T10:56:05.318 France: strasbourg blood culture Illumina HiSeq EA7290 446.0x 99.44 99.61 0 100 0.05 GCF_002096115.1 2373 2514 2514 87 6 47 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002096135.1 HMT-128 VISLISI_25 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis VISLISI_25 1 2491642 33.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/135/GCA_002096135.1_ASM209613v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA382360 28035 SAMN06704779 ASM209613v1 Chromosome SPAdes v. 2.9.0 2017-04-10T11:27:05.740 France: strasbourg Prosthesis sonication Illumina HiSeq EA7290 485.0x 99.43 99.61 0 100 0.1 GCF_002096135.1 2338 2473 2473 80 6 48 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002096155.1 HMT-128 VISLISI_27 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis VISLISI_27 2 2600937 33.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/155/GCA_002096155.1_ASM209615v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA380629 28035 SAMN06645327 ASM209615v1 Chromosome SPAdes v. 2.9.0 2017-03-27T13:38:04.923 France: Strasbourg Material Illumina HiSeq EA7290 490.0x 99.55 99.38 0 100 0.05 GCF_002096155.1 2435 2589 2589 85 8 60 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002096175.1 HMT-707 OD_338919_11 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_338919_11 24 2032500 41.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/175/GCA_002096175.1_ASM209617v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA304678 1891914 SAMN06705613 ASM209617v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:07.340 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 5.3x 94.63 99.83 0.2 99.99 0.01 GCF_002096175.1 NCUV01 2005 2099 2099 39 5 49 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096175.1 HMT-707 OD_338919_11 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_338919_11 24 2032500 41.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/175/GCA_002096175.1_ASM209617v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA304678 1891914 SAMN06705613 ASM209617v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:07.340 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 5.3x 94.63 99.83 0.2 99.99 0.01 GCF_002096175.1 NCUV01 2005 2099 2099 39 5 49 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096215.1 HMT-071 OD_348934_12 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus OD_348934_12 14 1852323 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/215/GCA_002096215.1_ASM209621v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA304678 1077464 SAMN06705632 ASM209621v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:08.503 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 17.1x 92.56 99.87 0.4 99.99 0.06 GCF_002096215.1 NCUC01 1825 1934 1934 56 5 47 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_002096215.1 HMT-071 OD_348934_12 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus OD_348934_12 14 1852323 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/215/GCA_002096215.1_ASM209621v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA304678 1077464 SAMN06705632 ASM209621v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:08.503 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 17.1x 92.56 99.87 0.4 99.99 0.06 GCF_002096215.1 NCUC01 1825 1934 1934 56 5 47 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096275.1 HMT-707 OD_314165_09 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_314165_09 18 1951470 40.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/275/GCA_002096275.1_ASM209627v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CN PRJNA304678 1077464 SAMN06705628 ASM209627v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:08.253 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 5.6x 92.71 99.67 0.2 99.99 0.1 GCF_002096275.1 NCUG01 1846 1972 1972 73 5 47 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096275.1 HMT-707 OD_314165_09 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_314165_09 18 1951470 40.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/275/GCA_002096275.1_ASM209627v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CN PRJNA304678 1077464 SAMN06705628 ASM209627v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:08.253 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 5.6x 92.71 99.67 0.2 99.99 0.1 GCF_002096275.1 NCUG01 1846 1972 1972 73 5 47 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096295.1 HMT-071 RH_48720_11 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus RH_48720_11 9 1934840 41.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/295/GCA_002096295.1_ASM209629v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA304678 1077464 SAMN06705633 ASM209629v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:08.570 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 5.8x 93.17 99.82 0.2 100 0.06 GCF_002096295.1 NCUB01 1831 1928 1928 43 6 47 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_002096295.1 HMT-071 RH_48720_11 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus RH_48720_11 9 1934840 41.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/295/GCA_002096295.1_ASM209629v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA304678 1077464 SAMN06705633 ASM209629v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:08.570 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 5.8x 93.17 99.82 0.2 100 0.06 GCF_002096295.1 NCUB01 1831 1928 1928 43 6 47 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096355.1 HMT-071 OD_326128_08 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus OD_326128_08 10 1847293 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/355/GCA_002096355.1_ASM209635v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_T PRJNA304678 1077464 SAMN06705629 ASM209635v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:08.316 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 5.5x 92.62 99.87 0.2 99.98 0.06 GCF_002096355.1 NCUF01 1769 1872 1872 53 5 44 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_002096355.1 HMT-071 OD_326128_08 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus OD_326128_08 10 1847293 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/355/GCA_002096355.1_ASM209635v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_T PRJNA304678 1077464 SAMN06705629 ASM209635v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:08.316 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 5.5x 92.62 99.87 0.2 99.98 0.06 GCF_002096355.1 NCUF01 1769 1872 1872 53 5 44 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096375.1 HMT-707 RH_8610_08 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis RH_8610_08 18 1990764 41.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/375/GCA_002096375.1_ASM209637v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CW PRJNA304678 1891914 SAMN06705625 ASM209637v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:08.070 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 6.5x 94.71 99.38 0.2 99.98 0.04 GCF_002096375.1 NCUJ01 1884 1974 1974 38 5 46 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096375.1 HMT-707 RH_8610_08 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis RH_8610_08 18 1990764 41.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/375/GCA_002096375.1_ASM209637v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CW PRJNA304678 1891914 SAMN06705625 ASM209637v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:08.070 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 6.5x 94.71 99.38 0.2 99.98 0.04 GCF_002096375.1 NCUJ01 1884 1974 1974 38 5 46 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096435.1 HMT-707 Y_11577_11 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis Y_11577_11 25 1999772 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/435/GCA_002096435.1_ASM209643v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_AA PRJNA304678 1891914 SAMN06705626 ASM209643v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:08.123 Denmark: Region Zealand blood Illumina HiSeq Slagelse Hospital 5.7x 94.52 99.87 0.2 99.99 0.01 GCF_002096435.1 NCUI01 1953 2044 2044 35 5 50 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096435.1 HMT-707 Y_11577_11 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis Y_11577_11 25 1999772 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/435/GCA_002096435.1_ASM209643v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_AA PRJNA304678 1891914 SAMN06705626 ASM209643v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:08.123 Denmark: Region Zealand blood Illumina HiSeq Slagelse Hospital 5.7x 94.52 99.87 0.2 99.99 0.01 GCF_002096435.1 NCUI01 1953 2044 2044 35 5 50 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096445.1 HMT-707 RH_57980_07 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis RH_57980_07 13 1988397 41.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/445/GCA_002096445.1_ASM209644v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_N PRJNA304678 1891914 SAMN06705624 ASM209644v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:08.010 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 6.9x 94.63 99.87 0.27 100 0.02 GCF_002096445.1 NCUK01 1908 2007 2007 36 6 56 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096445.1 HMT-707 RH_57980_07 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis RH_57980_07 13 1988397 41.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/445/GCA_002096445.1_ASM209644v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_N PRJNA304678 1891914 SAMN06705624 ASM209644v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:08.010 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 6.9x 94.63 99.87 0.27 100 0.02 GCF_002096445.1 NCUK01 1908 2007 2007 36 6 56 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096455.1 HMT-707 RH_50443_09 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis RH_50443_09 8 1921370 41.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/455/GCA_002096455.1_ASM209645v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CY PRJNA304678 1891914 SAMN06705623 ASM209645v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:07.956 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 5.5x 95.16 99.83 0.2 100 0.08 GCF_002096455.1 NCUL01 1806 1897 1897 40 5 45 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096455.1 HMT-707 RH_50443_09 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis RH_50443_09 8 1921370 41.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/455/GCA_002096455.1_ASM209645v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CY PRJNA304678 1891914 SAMN06705623 ASM209645v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:07.956 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 5.5x 95.16 99.83 0.2 100 0.08 GCF_002096455.1 NCUL01 1806 1897 1897 40 5 45 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096495.1 HMT-707 OD_336064_07 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_336064_07 12 1967066 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/495/GCA_002096495.1_ASM209649v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CU PRJNA304678 1891914 SAMN06705620 ASM209649v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.766 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 7.0x 94.8 99.87 0.2 100 0.06 GCF_002096495.1 NCUO01 1805 1898 1898 38 5 49 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096495.1 HMT-707 OD_336064_07 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_336064_07 12 1967066 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/495/GCA_002096495.1_ASM209649v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CU PRJNA304678 1891914 SAMN06705620 ASM209649v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.766 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 7.0x 94.8 99.87 0.2 100 0.06 GCF_002096495.1 NCUO01 1805 1898 1898 38 5 49 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096515.1 HMT-707 OD_332610_07 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_332610_07 9 1946464 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/515/GCA_002096515.1_ASM209651v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BV PRJNA304678 1891914 SAMN06705619 ASM209651v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.706 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 7.0x 94.96 99.87 0.26 99.99 0.01 GCF_002096515.1 NCUP01 1827 1939 1939 55 6 50 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096515.1 HMT-707 OD_332610_07 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_332610_07 9 1946464 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/515/GCA_002096515.1_ASM209651v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BV PRJNA304678 1891914 SAMN06705619 ASM209651v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.706 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 7.0x 94.96 99.87 0.26 99.99 0.01 GCF_002096515.1 NCUP01 1827 1939 1939 55 6 50 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096525.1 HMT-707 RH_34706_11 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis RH_34706_11 7 1936849 41.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/525/GCA_002096525.1_ASM209652v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CP PRJNA304678 1891914 SAMN06705622 ASM209652v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.893 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 14.1x 95.11 99.87 0.2 100 0.04 GCF_002096525.1 NCUM01 1805 1901 1901 39 6 50 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096525.1 HMT-707 RH_34706_11 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis RH_34706_11 7 1936849 41.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/525/GCA_002096525.1_ASM209652v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CP PRJNA304678 1891914 SAMN06705622 ASM209652v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.893 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 14.1x 95.11 99.87 0.2 100 0.04 GCF_002096525.1 NCUM01 1805 1901 1901 39 6 50 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096535.1 HMT-707 RH_1735_08 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis RH_1735_08 11 2004683 41.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/535/GCA_002096535.1_ASM209653v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp963519935 PRJNA304678 1891914 SAMN06705621 ASM209653v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.826 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 5.6x 94.83 99.87 0.27 100 0.03 GCF_002096535.1 NCUN01 1849 1945 1945 41 5 49 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096535.1 HMT-707 RH_1735_08 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis RH_1735_08 11 2004683 41.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/535/GCA_002096535.1_ASM209653v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp963519935 PRJNA304678 1891914 SAMN06705621 ASM209653v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.826 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 5.6x 94.83 99.87 0.27 100 0.03 GCF_002096535.1 NCUN01 1849 1945 1945 41 5 49 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096575.1 HMT-707 OD_321121_09 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_321121_09 10 2016848 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/575/GCA_002096575.1_ASM209657v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CP PRJNA304678 1891914 SAMN06705618 ASM209657v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.640 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 13.0x 95.03 99.87 0.2 100 0.06 GCF_002096575.1 NCUQ01 1891 1985 1985 38 6 49 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096575.1 HMT-707 OD_321121_09 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_321121_09 10 2016848 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/575/GCA_002096575.1_ASM209657v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CP PRJNA304678 1891914 SAMN06705618 ASM209657v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.640 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 13.0x 95.03 99.87 0.2 100 0.06 GCF_002096575.1 NCUQ01 1891 1985 1985 38 6 49 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096595.1 HMT-707 OD_311844-09 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_311844-09 10 1951174 41.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/595/GCA_002096595.1_ASM209659v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_D PRJNA304678 1891914 SAMN06705617 ASM209659v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:07.576 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 5.2x 94.5 99.87 0.2 99.99 0.05 GCF_002096595.1 NCUR01 1846 1942 1942 40 5 50 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002096595.1 HMT-707 OD_311844-09 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis OD_311844-09 10 1951174 41.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/595/GCA_002096595.1_ASM209659v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_D PRJNA304678 1891914 SAMN06705617 ASM209659v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:07.576 Denmark: Region of Southern De blood Illumina HiSeq Slagelse Hospital 5.2x 94.5 99.87 0.2 99.99 0.05 GCF_002096595.1 NCUR01 1846 1942 1942 40 5 50 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096675.1 HMT-398 RH_55407_11 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani RH_55407_11 20 1834212 41.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/675/GCA_002096675.1_ASM209667v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA304678 1458253 SAMN06705609 ASM209667v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.096 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 15.7x 95.64 99.82 0.2 99.99 0.02 GCF_002096675.1 NCUZ01 1727 1823 1823 37 5 53 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_002096675.1 HMT-398 RH_55407_11 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani RH_55407_11 20 1834212 41.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/675/GCA_002096675.1_ASM209667v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA304678 1458253 SAMN06705609 ASM209667v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:07.096 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 15.7x 95.64 99.82 0.2 99.99 0.02 GCF_002096675.1 NCUZ01 1727 1823 1823 37 5 53 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096695.1 HMT-398 Y_052157_08 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani Y_052157_08 22 1929173 41.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/695/GCA_002096695.1_ASM209669v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA304678 1458253 SAMN06705607 ASM209669v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:06.906 Denmark: Region Zealand blood Illumina HiSeq Slagelse Hospital 7.3x 96.51 99.47 0.6 99.99 0.07 GCF_002096695.1 NCVB01 1809 1906 1906 40 5 51 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_002096695.1 HMT-398 Y_052157_08 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani Y_052157_08 22 1929173 41.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/695/GCA_002096695.1_ASM209669v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA304678 1458253 SAMN06705607 ASM209669v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:06.906 Denmark: Region Zealand blood Illumina HiSeq Slagelse Hospital 7.3x 96.51 99.47 0.6 99.99 0.07 GCF_002096695.1 NCVB01 1809 1906 1906 40 5 51 1 Streptococcus_oralis_HMT_071_398_707 GCA_002096735.1 HMT-677 RH_8961_10 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis RH_8961_10 17 1888936 40.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/735/GCA_002096735.1_ASM209673v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CZ PRJNA304678 28037 SAMN06705606 ASM209673v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:06.824 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 5.6x 94.84 99.78 0.4 100 0.38 GCF_002096735.1 NCVC01 1791 1913 1913 65 6 50 1 Streptococcus_mitis_homd_HMT_677 GCA_002096755.1 HMT-677 RH_50275_09 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis RH_50275_09 26 2057130 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/755/GCA_002096755.1_ASM209675v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AC PRJNA304678 28037 SAMN06705603 ASM209675v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:06.515 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 5.3x 94.59 99.82 0.2 100 0.72 GCF_002096755.1 NCVF01 2038 2142 2142 46 6 51 1 Streptococcus_mitis_homd_HMT_677 GCA_002096815.1 HMT-677 RH_12363_08 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis RH_12363_08 21 1984277 40.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/815/GCA_002096815.1_ASM209681v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AD PRJNA304678 28037 SAMN06705599 ASM209681v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:06.006 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 5.7x 94.12 99.82 0.27 100 0 GCF_002096815.1 NCVJ01 1872 1980 1980 53 5 49 1 Streptococcus_mitis_homd_HMT_677 GCA_002096835.1 HMT-677 RH_43861_09 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis RH_43861_09 23 1849671 40.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/835/GCA_002096835.1_ASM209683v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_W PRJNA304678 28037 SAMN06705602 ASM209683v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:06.404 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 10.8x 94.41 99.82 0.2 99.98 0 GCF_002096835.1 NCVG01 1715 1827 1827 56 6 49 1 Streptococcus_mitis_homd_HMT_677 GCA_002096855.1 HMT-677 RH_17439_08 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis RH_17439_08 33 1908049 40.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/855/GCA_002096855.1_ASM209685v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_Y PRJNA304678 28037 SAMN06705601 ASM209685v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:06.295 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 5.7x 94.65 99.74 0.29 99.97 0.38 GCF_002096855.1 NCVH01 1856 1964 1964 58 5 44 1 Streptococcus_mitis_homd_HMT_677 GCA_002096895.1 HMT-677 RH_17024_08 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis RH_17024_08 20 1819806 40.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/895/GCA_002096895.1_ASM209689v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AH PRJNA304678 28037 SAMN06705600 ASM209689v1 Contig SPAdes v. 3.1.1 2017-04-10T14:37:06.176 Denmark: Capital Region of Den blood Illumina HiSeq Slagelse Hospital 6.0x 94.67 99.82 1.05 100 0.04 GCF_002096895.1 NCVI01 1692 1791 1791 48 6 44 1 Streptococcus_mitis_homd_HMT_677 GCA_002096935.1 HMT-677 B_5756_13 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis B_5756_13 27 1896604 40.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/935/GCA_002096935.1_ASM209693v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp041432295 PRJNA304678 28037 SAMN06705596 ASM209693v1 Scaffold SPAdes v. 3.1.1 2017-04-10T14:37:05.716 Denmark: Region Zealand blood Illumina HiSeq Slagelse Hospital 13.9x 95.24 99.82 0.2 99.99 0 GCF_002096935.1 NCVM01 1770 1884 1884 60 5 48 1 Streptococcus_mitis_homd_HMT_677 GCA_002096975.1 HMT-128 C_33 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis C_33 3 2500687 33.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/975/GCA_002096975.1_ASM209697v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA382365 28035 SAMN06704792 ASM209697v1 Chromosome SPAdes v. 2.9.0 2017-04-10T11:44:05.813 France: strasbourg Cutaneous swab Illumina HiSeq EA7290 553.0x 99.55 99.56 0 100 0.06 GCF_002096975.1 2332 2478 2478 88 5 52 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002097035.1 HMT-128 VISLISI_22 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis VISLISI_22 2 2570886 33.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/097/035/GCA_002097035.1_ASM209703v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA382358 28035 SAMN06704732 ASM209703v1 Chromosome SPAdes v. 2.9.0 2017-04-10T11:21:05.016 France: strasbourg blood culture Illumina EA7290 769.0x 99.94 99.49 0 100 0.08 GCF_002097035.1 2399 2551 2551 82 10 59 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002097595.2 HMT-550 M92 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus M92 1 3038845 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/097/595/GCA_002097595.2_ASM209759v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA319679 1280 SAMN04903357 ASM209759v2 Complete Genome HGAP v. RS_HGAP Assembly.2 2016-04-26T16:20:03.000 Canada: Calgary nasal swab PacBio University of Calgary 77.0x 99.47 99.51 0.08 100 0.23 GCF_002097595.2 2857 3063 3063 123 19 63 1 Staphylococcus_aureus_homd_HMT_550 GCA_002104555.1 HMT-128 VISLISI_33 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis VISLISI_33 2 2667001 33.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/555/GCA_002104555.1_ASM210455v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA380729 28035 SAMN06646534 ASM210455v1 Chromosome SPAdes v. 2.9.0 2017-03-28T06:20:03.576 France: Strasbourg liver abscess Illumina HiSeq EA7290 451.0x 99.55 99.61 0 100 0.31 GCF_002104555.1 2527 2676 2676 85 7 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002114275.1 HMT-120 IPK_TSA25 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus IPK_TSA25 4 2517398 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/114/275/GCA_002114275.1_ASM211427v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA317609 1283 SAMN06759398 ASM211427v1 Contig PacBio SMRT Analysis v. 2.3.0 2017-04-17T04:36:05.500 South Korea surface area of a building with less than 200 occupants PacBio Institut Pasteur Korea 290.4x 99.2 99.62 0 99.98 0.02 GCF_002114275.1 NDWY01 2405 2584 2584 97 19 62 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_002119785.3 HMT-005 ZS207 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-005 Acinetobacter lwoffii ZS207 11 3549925 42.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/119/785/GCA_002119785.3_ASM211978v3 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter fasciculus PRJNA359405 28090 SAMN06191591 ASM211978v3 Complete Genome Newbler v. 3.0 2016-12-30T05:14:03.517 Poland: lower Silesia microbial mats from Zloty Stok gold mine Illumina MiSeq; 454; Sanger Institute of Biochemistry and Biophysics PAS 135.0x 96.44 GCF_002119785.2 3455 3593 3593 29 21 87 1 Acinetobacter_lwoffii_homd_HMT_005 GCA_002127985.1 HMT-732 685 Named Cultivated Pathogen (Abundance: Scarce) HMT-732 Mycoplasmoides pneumoniae 685 1 816292 40.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/127/985/GCA_002127985.1_ASM212798v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pneumoniae PRJNA328823 2104 SAMN05391693 ASM212798v1 Complete Genome HGAP v. 3 2016-07-14T12:17:09.190 Denmark clinical PacBio Centers for Disease Control and Prevention 90.6x 99.76 99.25 0 99.09 0.11 GCF_002127985.1 1393 1436 1436 2 3 37 1 Mycoplasmoides_pneumoniae_homd_HMT_732 GCA_002128185.1 HMT-732 K27 Named Cultivated Pathogen (Abundance: Scarce) HMT-732 Mycoplasmoides pneumoniae K27 1 817038 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/128/185/GCA_002128185.1_ASM212818v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pneumoniae PRJNA328823 2104 SAMN05391708 ASM212818v1 Complete Genome HGAP v. 3 2016-07-14T12:17:10.083 Kenya clinical PacBio Centers for Disease Control and Prevention 102.1x 99.96 99.22 0 98.8 0.11 GCF_002128185.1 1398 1441 1441 2 3 37 1 Mycoplasmoides_pneumoniae_homd_HMT_732 GCA_002138415.1 HMT-663 OUC_Est10 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-663 Stenotrophomonas maltophilia OUC_Est10 1 4668743 66.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/138/415/GCA_002138415.1_ASM213841v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas maltophilia_G PRJNA321363 40324 SAMN04992827 ASM213841v1 Complete Genome HGAP3 in SMRT Analysis v. 2.3.0 2016-05-12T00:57:04.000 China: Qingdao PacBio Ocean University of China 123.0x 92.52 99.95 0 100 0.21 GCF_002138415.1 4182 4308 4308 34 13 78 1 Stenotrophomonas_maltophilia_homd_HMT_663 GCA_002148255.1 HMT-654 C592 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-654 Eggerthella lenta C592 1 3593204 64.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/148/255/GCA_002148255.1_ASM214825v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella;s__Eggerthella lenta PRJNA384908 84112 SAMN06853954 ASM214825v1 Complete Genome SPAdes v. 3.9,0 2017-04-30T19:23:02.879 USA Illumina HiSeq; Oxford Nanopore MinION University of Illinois 71.0x 98.7 100 1.61 100 0.48 GCF_002148255.1 3052 3127 3127 13 9 52 1 Eggerthella_lenta_homd_HMT_654 GCA_002149965.1 HMT-342 P5:ABC Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-342 Novosphingobium panipatense P5 99 5735120 64.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/149/965/GCA_002149965.1_ASM214996v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium;s__Novosphingobium panipatense_A PRJNA358440 428991 SAMN06174115 ASM214996v1 Scaffold Velvet v. 1.2.10 2016-12-21T22:24:03.046 India: Assam Crude oil contaminated sediment (collected from surface layer) Illumina NextSeq 500 North-Eastern Hill University 116.0x 88.14 99.48 1.45 100 0.48 GCF_002149965.1 MSQB01 5164 5259 5259 30 4 60 1 Novosphingobium_panipatense_homd_HMT_342 GCA_002155285.1 HMT-686 KCOM 1054 (= ChDC YM3) Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans KCOM 1054 (= ChDC YM3) 1 2098341 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/155/285/GCA_002155285.1_ASM215528v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA270154 1309 SAMN03263582 ASM215528v1 Chromosome SPAdes v. 3.8.2 2014-12-12T01:04:11.530 South Korea: Gwangju Illumina HiSeq Chosun University 2259.0x 99.3 100 0 100 0.1 GCF_002155285.1 1980 2101 2101 29 15 76 1 Streptococcus_mutans_homd_HMT_686 GCA_002155695.1 HMT-007 DSM 10594 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-007 Erythrobacter tepidarius DSM 10594 32 3216818 65.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/155/695/GCA_002155695.1_ASM215569v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter;s__Erythrobacter tepidarius PRJNA322640 60454 SAMN06251563 ASM215569v1 Contig ABySS v. 1.5.2 2017-01-24T03:57:15.850 Japan: Shidzuoka Prefecture Illumina HiSeq Second Institute of Oceanography, State Oceanic Administration 450.0x 99.54 0 100 0.13 GCF_002155695.1 MUYJ01 3051 3112 3112 13 3 44 1 GCA_002156725.1 HMT-731 BK13043 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-731 Klebsiella pneumoniae BK13043 4 5896654 56.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/156/725/GCA_002156725.1_ASM215672v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella pneumoniae PRJNA376414 573 SAMN06701573 ASM215672v1 Complete Genome HGAP v. v2 2017-04-07T16:09:05.300 USA: New York, New York City unknown PacBio Houston Methodist Hospital 121.0x 99.98 100 0.02 100 0.85 GCF_002156725.1 5552 5826 5826 160 25 88 1 Klebsiella_pneumoniae_homd_HMT_731 GCA_002156805.1 HMT-072 KC-Na-01 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum KC-Na-01 3 2797692 59.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/156/805/GCA_002156805.1_ASM215680v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA386621 43770 SAMN07109493 ASM215680v1 Complete Genome HGAP3 v. Apr-2017 2017-05-15T03:39:05.613 South Korea: South sea Blowhole swab Illumina HiSeq; PacBio Korea Research Institute of Bioscience & Biotechnology 341.0x 95.54 99.34 0.09 100 0.11 GCF_002156805.1 2645 2723 2723 10 12 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_002157665.1 HMT-686 HM Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans HM 1 2003112 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/157/665/GCA_002157665.1_ASM215766v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJDB5660 1309 SAMD00078033 ASM215766v1 Scaffold Edena v. 2 2017-05-03T01:00:42.170 Japan: Nagasaki illumina GAII Department of Pediatric Dentistry, Nagasaki University Graduate School of Biomedical Sciences 179.0x 99.16 99.13 0.37 99.99 0.11 GCF_002157665.1 BDOS01 1842 1904 1904 26 4 31 1 Streptococcus_mutans_homd_HMT_686 GCA_002159215.1 HMT-964 An90 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-964 Alistipes onderdonkii An90 17 3483340 58.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/159/215/GCA_002159215.1_ASM215921v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii PRJNA377666 328813 SAMN06473769 ASM215921v1 Contig IDBA_UD v. 1.1.1 2017-03-03T11:55:22.453 not applicable caecum Illumina NextSeq 500 Veterinary Research Institute 269.0x 98.8 99.28 0.48 100 0.2 GCF_002159215.1 NFHB01 2773 2835 2835 14 3 44 1 Alistipes_onderdonkii_homd_HMT_964 GCA_002165435.1 HMT-120 SH06 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SH06 4 2501418 32.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/165/435/GCA_002165435.1_ASM216543v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA385713 1283 SAMN06908747 ASM216543v1 Contig ABySS v. 1.5.1 2017-05-07T09:17:04.280 Iran: Children Medical Center, blood Illumina Highseq; PacBio University of Applied Sciencesl Leiden 379.0x 99.39 99.62 0.85 99.99 0.09 GCF_002165435.1 NFUG01 2384 2526 2526 94 12 35 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_002165785.1 HMT-575 Lasto28.99 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 Lasto28.99 30 1937734 37.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/165/785/GCA_002165785.1_ASM216578v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_W PRJNA280464 199 SAMN03457016 ASM216578v1 Contig Velvet v. 1.2.10 2015-04-01T19:23:23.000 South Africa stool Illumina MiSeq Institute of Environmental Science and Research (ESR) 212.0x 93.91 99.88 0.56 99.99 0.18 GCF_002165785.1 NDYO01 2018 2076 2076 4 4 49 1 Campylobacter_concisus_HMT_433_575 GCA_002165785.1 HMT-575 Lasto28.99 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 Lasto28.99 30 1937734 37.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/165/785/GCA_002165785.1_ASM216578v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_W PRJNA280464 199 SAMN03457016 ASM216578v1 Contig Velvet v. 1.2.10 2015-04-01T19:23:23.000 South Africa stool Illumina MiSeq Institute of Environmental Science and Research (ESR) 212.0x 93.91 99.88 0.56 99.99 0.18 GCF_002165785.1 NDYO01 2018 2076 2076 4 4 49 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002165815.1 HMT-433 CCUG 19995 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 CCUG 19995 44 2105146 39.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/165/815/GCA_002165815.1_ASM216581v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA280463 199 SAMN03457015 ASM216581v1 Contig Velvet v. 1.2.10 2015-04-01T19:23:23.000 Sweden stool Illumina MiSeq ESR 198.0x 88.64 99.51 2.41 99.99 0.14 GCF_002165815.1 NDYN01 2091 2142 0 4 2 44 1 Campylobacter_concisus_HMT_433_575 GCA_002165815.1 HMT-433 CCUG 19995 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 CCUG 19995 44 2105146 39.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/165/815/GCA_002165815.1_ASM216581v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA280463 199 SAMN03457015 ASM216581v1 Contig Velvet v. 1.2.10 2015-04-01T19:23:23.000 Sweden stool Illumina MiSeq ESR 198.0x 88.64 99.51 2.41 99.99 0.14 GCF_002165815.1 NDYN01 2091 2142 0 4 2 44 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002165825.1 HMT-433 Lasto127.99 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 Lasto127.99 44 2027572 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/165/825/GCA_002165825.1_ASM216582v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA280467 199 SAMN03457019 ASM216582v1 Contig Velvet v. 1.2.10 2015-04-01T19:23:24.000 South Africa stool Illumina MiSeq Institute of Environmental Science and Research (ESR) 196.0x 88.65 99.51 0 99.78 0 GCF_002165825.1 NDYQ01 1988 2040 2040 4 2 45 1 Campylobacter_concisus_HMT_433_575 GCA_002165825.1 HMT-433 Lasto127.99 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 Lasto127.99 44 2027572 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/165/825/GCA_002165825.1_ASM216582v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA280467 199 SAMN03457019 ASM216582v1 Contig Velvet v. 1.2.10 2015-04-01T19:23:24.000 South Africa stool Illumina MiSeq Institute of Environmental Science and Research (ESR) 196.0x 88.65 99.51 0 99.78 0 GCF_002165825.1 NDYQ01 1988 2040 2040 4 2 45 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002165895.1 HMT-575 Lasto205.94 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 Lasto205.94 39 1891545 37.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/165/895/GCA_002165895.1_ASM216589v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_L PRJNA280468 199 SAMN03457020 ASM216589v1 Contig Velvet v. 1.2.10 2015-04-01T19:23:24.000 South Africa stool Illumina MiSeq Institute of Environmental Science and Research (ESR) 204.0x 93.95 99.82 0.37 99.91 0.05 GCF_002165895.1 NDYR01 1901 1960 1960 4 5 49 1 Campylobacter_concisus_HMT_433_575 GCA_002165895.1 HMT-575 Lasto205.94 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 Lasto205.94 39 1891545 37.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/165/895/GCA_002165895.1_ASM216589v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_L PRJNA280468 199 SAMN03457020 ASM216589v1 Contig Velvet v. 1.2.10 2015-04-01T19:23:24.000 South Africa stool Illumina MiSeq Institute of Environmental Science and Research (ESR) 204.0x 93.95 99.82 0.37 99.91 0.05 GCF_002165895.1 NDYR01 1901 1960 1960 4 5 49 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002172955.1 HMT-559 TMED4 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-559 Afipia broomeae TMED4 49 5163516 61.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/172/955/GCA_002172955.1_ASM217295v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia;s__Afipia broomeae PRJNA385857 1986602 SAMN06971858 ASM217295v1 Contig Megahit v. 1.0.3; Minimus2 v. 3.1.0 2017-05-12T20:08:10.060 Mediterranean Sea seawater Illumina HiSeq Tara Oceans Consortium 98.1 1.27 97.69 2.92 NHBJ01 4953 5042 5042 32 2 54 1 Afipia_broomeae_homd_HMT_559 GCA_002176835.1 HMT-819 UMNLJ22 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-819 Lactobacillus johnsonii UMNLJ22 3 2042390 35.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/176/835/GCA_002176835.1_ASM217683v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus sp946579245 PRJNA316010 33959 SAMN04573146 ASM217683v1 Complete Genome CLC NGS Cell v. 2014 2016-03-22T16:30:07.747 USA ileum Illumina MiSeq; PacBio University of Minnesota 50.0x 98.02 99.22 0.78 100 0.11 GCF_002176835.1 1929 2066 2066 37 21 78 1 Lactobacillus_johnsonii_homd_HMT_819 GCA_002179995.1 HMT-686 B14 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B14 68 1985972 36.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/179/995/GCA_002179995.1_ASM217999v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA385680 1309 SAMN06920495 ASM217999v1 Contig MIRA v. 3.9.18 2017-05-09T06:46:05.793 USA: Florida Dental Plaque IonTorrent Madurai kamaraj university 97.5x 99 99.88 2.12 99.99 1.4 GCF_002179995.1 NFUJ01 1908 2024 2024 60 4 51 1 Streptococcus_mutans_homd_HMT_686 GCA_002192215.1 HMT-568 LC5 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-568 Lacticaseibacillus casei LC5 1 3132867 47.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/192/215/GCA_002192215.1_ASM219221v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus casei PRJNA340077 1582 SAMN05631198 ASM219221v1 Complete Genome HGAP v. 3.0 2016-08-25T07:41:03.280 South Korea: Seoul Commercial dietary supplements PacBio Korea Food Research Institute 246.0x 95.92 99.46 1.72 99.92 0.19 GCF_002192215.1 2912 3016 3016 28 15 60 1 Lacticaseibacillus_casei_homd_HMT_568 GCA_002192435.1 HMT-608 LAC FRN-92 Named Cultivated Oral (Abundance: Scarce) HMT-608 Limosilactobacillus fermentum LAC FRN-92 1 2063606 51.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/192/435/GCA_002192435.1_ASM219243v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus fermentum PRJNA389240 1613 SAMN07192734 ASM219243v1 Complete Genome MIRA v. 4.0.2 2017-06-05T07:19:02.343 Italy oral swab Illumina MiSeq Universita degli Studi di Catania 71.2x 99.3 99.18 2.53 99.83 0.15 GCF_002192435.1 2023 2134 2134 28 20 62 1 Limosilactobacillus_fermentum_homd_HMT_608 GCA_002196895.1 HMT-316 H1892 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-316 Haematobacter missouriensis H1892 129 4337941 64.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/196/895/GCA_002196895.1_ASM219689v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Haematobacter;s__Haematobacter missouriensis PRJNA302795 366616 SAMN04279596 ASM219689v1 Contig CLC Genomics Workbench v. 4.9 2015-11-19T15:27:17.000 USA: Missouri Illumina HiSeq CDC 22.0x 99.99 99.39 1.19 100 0.43 GCF_002196895.1 NIPV01 4241 4322 4322 25 3 52 1 Haematobacter_missouriensis_homd_HMT_316 GCA_002196905.1 HMT-316 H2381 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-316 Haematobacter missouriensis H2381 97 4323477 64.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/196/905/GCA_002196905.1_ASM219690v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Haematobacter;s__Haematobacter missouriensis PRJNA302795 366616 SAMN04279643 ASM219690v1 Contig CLC Genomics Workbench Assembler v. 9.0 2015-11-19T15:54:18.918 USA: Michigan Illumina HiSeq CDC 30.0x 99.76 99.39 0.71 100 0.31 GCF_002196905.1 NIPX01 4208 4291 4291 27 3 52 1 Haematobacter_missouriensis_homd_HMT_316 GCA_002196965.1 HMT-104 G1212 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-104 Paracoccus yeei G1212 199 4399776 67.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/196/965/GCA_002196965.1_ASM219696v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus yeei PRJNA302807 147645 SAMN04280276 ASM219696v1 Contig CLC Genomics Grid Worker v. 6.0.2 2015-11-19T16:42:20.000 USA: Pennsylvania Illumina HiSeq CDC 150.0x 99.99 99.39 0.61 99.99 2.03 GCF_002196965.1 NIPZ01 4148 4230 4230 24 3 54 1 Paracoccus_yeei_homd_HMT_104 GCA_002197205.1 HMT-537 CUGBS591 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-537 Streptococcus agalactiae CUGBS591 1 2227680 35.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/197/205/GCA_002197205.1_ASM219720v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae PRJNA293392 1311 SAMN05384056 ASM219720v1 Complete Genome HGAP3 v. NOV-2015 2016-07-13T07:25:13.760 Hong Kong Joint Aspirate PacBio Singapore Streptococcus agalactiae working group 150.0x 99.14 99.99 0.35 99.99 0.19 GCF_002197205.1 2192 2337 2337 42 22 80 1 Streptococcus_agalactiae_homd_HMT_537 GCA_002197485.1 HMT-182 52-1A Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-182 Anoxybacillus flavithermus 52-1A 2 2830124 42.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/197/485/GCA_002197485.1_ASM219748v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus;s__Anoxybacillus flavithermus_G PRJNA386099 33934 SAMN06925341 ASM219748v1 Complete Genome HGAP v. 3 2017-05-10T06:53:03.023 Switzerland Milk powder PacBio University of Zurich, Vetsuisse Faculty 129.0x 99.44 0 100 0.06 GCF_002197485.1 2943 3195 3195 139 27 85 1 Anoxybacillus_flavithermus_homd_HMT_182 GCA_002197815.1 HMT-740 DSM 1045 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-740 Pseudomonas oleovorans DSM 1045 109 4852859 62.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/197/815/GCA_002197815.1_ASM219781v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E oleovorans PRJNA390074 1218129 SAMN07213127 ASM219781v1 Contig SPAdes v. 3.8.0 2017-06-12T09:16:03.753 not collected cutting fluid Illumina Goettingen Genomics Laboratory 112.0x 99.99 99.84 2.09 100 1.22 GCF_002197815.1 NIUB01 4640 4875 4875 165 7 62 1 Pseudomonas_oleovorans_homd_HMT_740 GCA_002202115.1 HMT-202 KCOM 1260 (=ChDC F218) Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1260 (=ChDC F218) 1 2635767 26.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/202/115/GCA_002202115.1_ASM220211v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386717 76857 SAMN07125686 ASM220211v1 Chromosome SPAdes v. 3.8.2 2017-05-15T23:23:04.330 South Korea: Gwangju subgingival plaque Illumina HiSeq Chosun University 1115.0x 97.02 100 0 100 0.75 GCF_002202115.1 2505 2596 2596 27 15 48 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002204395.1 HMT-577 KCOM 1378 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens KCOM 1378 6 2227855 55.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/204/395/GCA_002204395.1_ASM220439v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA386423 539 SAMN06947081 ASM220439v1 Scaffold SPAdes v. 3.8.2 2017-05-12T02:19:06.316 South Korea pus Illumina HiSeq Chosun University 1416.0x 98.07 96.49 0.56 100 0.03 GCF_002204395.1 NHRS01 2118 2199 2199 11 12 57 1 Eikenella_corrodens_homd_HMT_577 GCA_002204405.1 HMT-643 KCOM 1107 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 1107 13 2781500 43.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/204/405/GCA_002204405.1_ASM220440v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA386728 28131 SAMN07125721 ASM220440v1 Scaffold SPAdes v. 3.8.2 2017-05-16T01:58:04.856 South Korea: Gwangju subgingival dental plaque Illumina HiSeq Chosun University 566.0x 96.38 99.32 0.34 99.86 0.04 GCF_002204405.1 NHRV01 2397 2469 2469 10 13 48 1 Prevotella_intermedia_homd_HMT_643 GCA_002204435.1 HMT-202 KCOM 1001 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1001 3 2523644 27.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/204/435/GCA_002204435.1_ASM220443v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386424 76857 SAMN06947082 ASM220443v1 Scaffold SPAdes v. 3.8.2 2017-05-12T02:22:05.183 South Korea: Gwangju subgingival plaque, gingivitis Illumina HiSeq Chosun University 1370.0x 96.6 100 0 100 0.43 GCF_002204435.1 NHRT01 2372 2455 2455 25 12 45 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002204455.1 HMT-619 KCOM 2797 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 2797 44 2394377 48.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/204/455/GCA_002204455.1_ASM220445v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA386726 837 SAMN07125718 ASM220445v1 Scaffold SPAdes v. 3.8.2 2017-05-16T01:19:04.840 South Korea: Gwangju Subgingival dental plaque Illumina HiSeq Chosun University 1021.0x 98.32 99.92 0.16 100 0.04 GCF_002204455.1 NHRU01 2046 2120 2120 23 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002204475.1 HMT-693 KCOM 1102 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens KCOM 1102 8 2837965 42.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/204/475/GCA_002204475.1_ASM220447v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA386731 28133 SAMN07125733 ASM220447v1 Scaffold SPAdes v. 3.8.2 2017-05-16T02:15:05.900 South Korea: Gwangju subgingival dental plaque Illumina HiSeq Chosun University 469.0x 98.01 99.58 0 99.96 0.11 GCF_002204475.1 NHRW01 2438 2507 2507 8 13 47 1 Prevotella_nigrescens_homd_HMT_693 GCA_002205515.1 HMT-799 hebnu3h04 Named Cultivated Vaginal (Abundance: Medium) HMT-799 Ureaplasma parvum hebnu3h04 1 732889 25.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/205/515/GCA_002205515.1_ASM220551v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum PRJNA390580 134821 SAMN07244538 ASM220551v1 Complete Genome MIRA v. 4.0.5; CLC Genomics Workbench v. 10.0.1 2017-06-15T09:09:05.160 China:Zhangjiakou IonTorrent HeBei North University 108.3x 99.32 98.87 0 96.36 0.02 GCF_002205515.1 1224 1266 1266 5 6 30 1 Ureaplasma_parvum_homd_HMT_799 GCA_002205535.1 HMT-799 hebnu3h05 Named Cultivated Vaginal (Abundance: Medium) HMT-799 Ureaplasma parvum hebnu3h05 1 722452 25.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/205/535/GCA_002205535.1_ASM220553v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum PRJNA390580 134821 SAMN07245421 ASM220553v1 Complete Genome MIRA v. 4.0.5; CLC genomics workbench v. 10.0.1 2017-06-15T10:21:05.330 China:Zhangjiakou IonTorrent HeBei North University 60.6x 99.45 99.05 0 97.55 0 GCF_002205535.1 1207 1249 1249 5 6 30 1 Ureaplasma_parvum_homd_HMT_799 GCA_002205555.1 HMT-590 BZC3 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-590 Brevundimonas diminuta BZC3 1 3385620 67.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/205/555/GCA_002205555.1_ASM220555v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__Brevundimonas diminuta PRJNA390478 293 SAMN07236578 ASM220555v1 Chromosome SOAPdenovo v. 2.04 2017-06-14T05:46:04.890 China: Shandong gentamicin fermentation residue Illumina HiSeq CAAS 296.2x 97.52 99.68 0.97 99.99 0.5 GCF_002205555.1 3216 3292 3292 16 6 54 0 Brevundimonas_diminuta_homd_HMT_590 GCA_002205595.1 HMT-799 hebnu1229 Named Cultivated Vaginal (Abundance: Medium) HMT-799 Ureaplasma parvum hebnu1229 1 737737 25.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/205/595/GCA_002205595.1_ASM220559v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum PRJNA390580 134821 SAMN07246859 ASM220559v1 Complete Genome MIRA v. 4.0.5; CLC genomics workbench v. 10.0.1 2017-06-15T11:11:05.410 China:Zhangjiakou IonTorrent HeBei North University 63.6x 99.43 99.05 0.24 95.86 0.04 GCF_002205595.1 1242 1283 1283 4 6 30 1 Ureaplasma_parvum_homd_HMT_799 GCA_002205735.1 HMT-799 hebnu uu3 Named Cultivated Vaginal (Abundance: Medium) HMT-799 Ureaplasma parvum hebnu uu3 1 727176 25.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/205/735/GCA_002205735.1_ASM220573v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum PRJNA390580 134821 SAMN07246861 ASM220573v1 Complete Genome MIRA v. 4.0.5; CLC genomics workbench v. 10.0.1 2017-06-15T11:23:05.570 China:Zhangjiakou IonTorrent HeBei North University 90.9x 99.45 98.33 0 96.34 0.04 GCF_002205735.1 1215 1257 1257 5 6 30 1 Ureaplasma_parvum_homd_HMT_799 GCA_002206065.1 HMT-619 SJD5 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis SJD5 194 2275493 48.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/206/065/GCA_002206065.1_SJD5 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA205614 1297565 SAMN07255460 SJD5 Contig SOAPdenovo v. 1.3 2017-06-19T14:20:05.606 China subgingival dental plaque Illumina GAIIx Shanghai Jiao Tong University School of Medicine 298.0x 98.5 99.92 0.31 99.99 0.01 GCF_002206065.1 ASYN01 1962 2022 2022 13 3 43 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002206085.1 HMT-619 SJD4 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis SJD4 147 2249706 48.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/206/085/GCA_002206085.1_SJD4 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA205613 1297564 SAMN07255461 SJD4 Scaffold SOAPdenovo v. 1.3 2017-06-19T14:20:06.853 China subgingival dental plaque Illumina GAIIx Shanghai Jiao Tong University School of Medicine 378.0x 98.51 99.92 0 100 0.04 GCF_002206085.1 ASYM01 1890 1962 1962 21 4 46 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002206105.1 HMT-619 SJD11 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis SJD11 156 2298088 48.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/206/105/GCA_002206105.1_SJD11 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA205616 1297566 SAMN07255459 SJD11 Scaffold SOAPdenovo v. 1.3 2017-06-19T14:20:04.600 China subgingival dental plaque Illumina GAIIx Shanghai Jiao Tong University School of Medicine 165.0x 98.44 99.92 0.16 99.99 0.02 GCF_002206105.1 ASYO01 1960 2044 2044 24 4 55 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002206485.2 HMT-830 FDAARGOS_303 Named Cultivated Vaginal (Abundance: Scarce) HMT-830 Mobiluncus mulieris FDAARGOS_303 5 2662734 55.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/206/485/GCA_002206485.2_ASM220648v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus mulieris PRJNA231221 2052 SAMN06173316 ASM220648v2 Contig CA v. 8.2 2016-12-21T16:19:28.490 USA:VA vaginal secretion from patient in Seattle, WA PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 586.0x 99.04 GCF_002206485.1 NJFD02 2434 2499 2499 6 6 51 2 Mobiluncus_mulieris_homd_HMT_830 GCA_002208045.1 HMT-619 SJD12 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis SJD12 146 2264936 48.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/208/045/GCA_002208045.1_SJD12 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA205617 1297567 SAMN07255458 SJD12 Scaffold SOAPdenovo v. 1.3 2017-06-19T14:20:03.410 China subgingival dental plaque Illumina GAIIx Shanghai Jiao Tong University School of Medicine 230.0x 98.63 99.61 0 99.98 0.02 GCF_002208045.1 ASYP01 1937 2013 2013 22 3 50 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002208685.2 HMT-197 FDAARGOS_302 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-197 Kocuria rhizophila FDAARGOS_302 1 2697877 71.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/208/685/GCA_002208685.2_ASM220868v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria rhizophila_A PRJNA231221 72000 SAMN06173315 ASM220868v2 Complete Genome SMRT v. 2.3.0, HGAP v. 3.0 2016-12-21T16:19:27.400 Hungary: Soroksar tributary of rhizosphere of narrowleaf cattail (Typha angustifolia) from a floating mat PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 14.4x 89.3 98.68 0 99.99 0.15 GCF_002208685.2 2313 2388 2388 15 9 49 2 Kocuria_rhizophila_homd_HMT_197 GCA_002208725.2 HMT-469 FDAARGOS_306 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica FDAARGOS_306 2 3168230 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/208/725/GCA_002208725.2_ASM220872v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA231221 28132 SAMN06173319 ASM220872v2 Complete Genome SMRT v. 2.3.0, HGAP v. 3.0 2016-12-21T16:19:31.003 USA: SC sputum from South Carolina Dept. of Health and Environmental Control PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 18.0x 99.99 99.32 0 99.97 0.01 GCF_002208725.2 2459 2534 2534 9 13 52 1 Prevotella_melaninogenica_homd_HMT_469 GCA_002208805.2 HMT-142 FDAARGOS_288 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-142 Staphylococcus pettenkoferi FDAARGOS_288 1 2502360 38.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/208/805/GCA_002208805.2_ASM220880v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pettenkoferi PRJNA231221 170573 SAMN06173301 ASM220880v2 Complete Genome CA v. 8.2 2016-12-21T16:19:14.803 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 24.1x 96.28 98.9 1.8 99.99 0.07 GCF_002208805.2 2313 2439 2439 47 19 59 1 Staphylococcus_pettenkoferi_homd_HMT_142 GCA_002209445.1 HMT-326 ChDC OS43 Named Cultivated Oral (Abundance: Medium) HMT-326 Capnocytophaga endodontalis ChDC OS43 1 3412686 38.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/209/445/GCA_002209445.1_ASM220944v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga periodontitidis PRJNA386716 2708117 SAMN07125685 ASM220944v1 Complete Genome SPAdes v. 3.8.2 2017-05-15T23:22:06.283 South Korea: Gwangju abscess Illumina HiSeq Chosun University 323.0x 100 0.48 99.9 0.22 GCF_002209445.1 3105 3174 3174 12 9 47 1 Capnocytophaga_periodontitidis_homd_HMT_326 GCA_002211605.1 HMT-698 ChDC F317 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto ChDC F317 1 2233010 27.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/211/605/GCA_002211605.1_ASM221160v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA270127 76856 SAMN03263083 ASM221160v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T21:40:09.266 South Korea: Gwangju Illumina HiSeq Chosun University 1769.0x 98.89 100 0 100 0.19 GCF_002211605.1 2122 2195 2195 18 10 44 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_002211625.1 HMT-202 KCOM 1275 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1275 1 2521394 26.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/211/625/GCA_002211625.1_ASM221162v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386738 76857 SAMN07125867 ASM221162v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2017-05-16T04:01:05.160 South Korea: Gwangju subgingival plaque Illumina HiSeq Chosun University 348.0x 97.09 100 0 100 0.37 GCF_002211625.1 2401 2492 2492 28 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002211645.1 HMT-420 ChDC F332 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis ChDC F332 1 2322902 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/211/645/GCA_002211645.1_ASM221164v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA386737 76859 SAMN07125863 ASM221164v1 Complete Genome AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2017-05-16T03:56:05.216 South Korea: Gwangju abscess Illumina HiSeq Chosun University 303.0x 96.8 100 0 100 0.07 2164 2245 2245 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_002212845.1 HMT-686 PKUSS-6 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-6 57 2012978 36.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/212/845/GCA_002212845.1_ASM221284v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464160 ASM221284v1 Contig SOAPdenovo v. 2 2017-03-02T11:02:10.317 USA a caries-active dental patient Illumina HiSeq Peking University School of Stomatology 114.0x 99.06 100 0.26 100 0.11 GCF_002212845.1 NBFF01 1876 1965 1965 54 3 31 1 Streptococcus_mutans_homd_HMT_686 GCA_002212855.1 HMT-686 PKUSS-2 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-2 40 1990377 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/212/855/GCA_002212855.1_ASM221285v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464156 ASM221285v1 Contig SOAPdenovo v. 2 2017-03-02T11:02:10.017 China missing Illumina HiSeq Peking University School of Stomatology 197.0x 99 100 0.64 100 0.17 GCF_002212855.1 NBFB01 1869 1965 1965 48 3 44 1 Streptococcus_mutans_homd_HMT_686 GCA_002212885.1 HMT-686 PKUSS-4 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-4 42 1998996 36.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/212/885/GCA_002212885.1_ASM221288v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464158 ASM221288v1 Contig SOAPdenovo v. 2 2017-03-02T11:02:10.147 China missing Illumina HiSeq Peking University School of Stomatology 366.0x 99.32 100 0 100 0.07 GCF_002212885.1 NBFD01 1886 1958 1958 29 3 39 1 Streptococcus_mutans_homd_HMT_686 GCA_002212905.1 HMT-686 PKUSS-5 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-5 37 1984238 36.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/212/905/GCA_002212905.1_ASM221290v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464159 ASM221290v1 Contig SOAPdenovo v. 2 2017-03-02T11:02:10.227 United Kingdom:England carious dentine Illumina HiSeq Peking University School of Stomatology 211.0x 99.97 100 0 100 0.06 GCF_002212905.1 NBFE01 1873 1948 1948 29 3 42 1 Streptococcus_mutans_homd_HMT_686 GCA_002212925.1 HMT-686 PKUSS-8 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-8 65 2024471 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/212/925/GCA_002212925.1_ASM221292v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464162 ASM221292v1 Contig SOAPdenovo v. 2 2017-03-02T11:02:10.447 Sweden dental plaque Illumina HiSeq Peking University School of Stomatology 214.0x 99.05 100 0.26 100 0.08 GCF_002212925.1 NBFH01 1899 1975 1975 27 3 45 1 Streptococcus_mutans_homd_HMT_686 GCA_002212935.1 HMT-686 PKUSS-9 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-9 40 2084933 38.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/212/935/GCA_002212935.1_ASM221293v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464163 ASM221293v1 Scaffold SOAPdenovo v. 2 2017-03-02T11:02:10.507 USA missing Illumina HiSeq Peking University School of Stomatology 198.0x 99.28 100 4.49 100 3.54 GCF_002212935.1 NBFI01 1914 2002 2002 49 7 31 1 Streptococcus_mutans_homd_HMT_686 GCA_002212965.1 HMT-686 PKUSS-11 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-11 54 2004353 36.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/212/965/GCA_002212965.1_ASM221296v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464165 ASM221296v1 Contig SOAPdenovo v. 2 2017-03-02T11:02:10.603 Japan missing Illumina HiSeq Peking University School of Stomatology 250.0x 99.3 100 0 100 0.11 GCF_002212965.1 NBFK01 1889 1964 1964 30 3 41 1 Streptococcus_mutans_homd_HMT_686 GCA_002212995.1 HMT-686 PKUSS-7 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-7 52 2001751 36.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/212/995/GCA_002212995.1_ASM221299v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464161 ASM221299v1 Scaffold SOAPdenovo v. 2 2017-03-02T11:02:10.393 missing missing Illumina HiSeq Peking University School of Stomatology 184.0x 98.99 100 0.64 100 0.18 GCF_002212995.1 NBFG01 1874 1958 1958 48 4 31 1 Streptococcus_mutans_homd_HMT_686 GCA_002213005.1 HMT-686 PKUSS-3 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-3 52 1980074 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/213/005/GCA_002213005.1_ASM221300v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464157 ASM221300v1 Contig SOAPdenovo v. 2 2017-03-02T11:02:10.057 China carious cavity from patient susceptible to dental caries Illumina HiSeq Peking University School of Stomatology 336.0x 99.1 100 0.64 100 0.17 GCF_002213005.1 NBFC01 1854 1955 1955 52 3 45 1 Streptococcus_mutans_homd_HMT_686 GCA_002213035.1 HMT-686 PKUSS-10 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-10 52 2003657 36.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/213/035/GCA_002213035.1_ASM221303v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464164 ASM221303v1 Contig SOAPdenovo v. 2 2017-03-02T11:02:10.543 Japan missing Illumina HiSeq Peking University School of Stomatology 267.0x 99.32 100 0 100 0.07 GCF_002213035.1 NBFJ01 1886 1961 1961 29 3 42 1 Streptococcus_mutans_homd_HMT_686 GCA_002213065.1 HMT-686 PKUSS-1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans PKUSS-1 36 1995598 36.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/213/065/GCA_002213065.1_ASM221306v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA377637 1309 SAMN06464155 ASM221306v1 Contig SOAPdenovo v. 2 2017-03-02T11:02:09.867 China missing Illumina HiSeq Peking University School of Stomatology 187.0x 99.3 100 0 100 0.11 GCF_002213065.1 NBFA01 1886 1961 1961 30 3 41 1 Streptococcus_mutans_homd_HMT_686 GCA_002214645.1 HMT-209 SL-205 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus SL-205 1 4061276 66.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/214/645/GCA_002214645.1_ASM221464v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA325173 164759 SAMN05284426 ASM221464v1 Complete Genome SMRT portal v. 2.3 2016-06-22T19:07:04.973 China: Beijing PacBio Beijing Agro-Biotechnology Research Center 160.0x 99.93 0.23 100 0.06 GCF_002214645.1 3740 3825 3825 19 9 56 1 Acidovorax_ebreus_homd_HMT_209 GCA_002215535.1 HMT-601 AMT Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis AMT 6 2570371 32.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/215/535/GCA_002215535.1_ASM221553v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA392321 1282 SAMN07291625 ASM221553v1 Complete Genome Celera Assembler v. 8.1 2017-06-28T16:48:03.313 USA: Manchester, New Hampshire skin and mucous membranes PacBio University of New Hampshire-Manchester 25.0x 97.19 99.39 0 100 0.26 GCF_002215535.1 2391 2550 2550 78 19 61 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_002220735.1 HMT-776 CCUG 20703 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-776 Campylobacter sputorum CCUG 20703 1 1757292 29.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/220/735/GCA_002220735.1_ASM222073v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F;s__Campylobacter_F sputorum PRJNA66805 1031920 SAMN03737989 ASM222073v1 Complete Genome Newbler v. 2.6 2015-05-27T17:03:40.000 United Kingdom: Preston Cow, fecal Sanger dideoxy sequencing; 454; Illumina; PacBio USDA, ARS, WRRC 1971.0x 98.8 99.14 0.43 99.99 0.05 GCF_002220735.1 1767 1826 1826 5 6 47 1 Campylobacter_sputorum_homd_HMT_776 GCA_002220755.1 HMT-776 LMG 17589 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-776 Campylobacter sputorum LMG 17589 1 1725016 29.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/220/755/GCA_002220755.1_ASM222075v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F;s__Campylobacter_F sputorum PRJNA66807 1032066 SAMN03737990 ASM222075v1 Complete Genome Newbler v. 2.6 2015-05-27T17:03:40.000 Canada: Ottawa Human, fecal Sanger dideoxy sequencing; 454; Illumina; PacBio USDA, ARS, WRRC 1802.0x 97.9 98.95 0.55 99.99 0.06 GCF_002220755.1 1728 1787 1787 5 6 47 1 Campylobacter_sputorum_homd_HMT_776 GCA_002220775.1 HMT-776 RM8705 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-776 Campylobacter sputorum RM8705 1 1681311 29.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/220/775/GCA_002220775.1_ASM222077v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F;s__Campylobacter_F sputorum_B PRJNA284989 1660072 SAMN03737992 ASM222077v1 Complete Genome Newbler v. 2.6 2015-05-27T17:03:40.000 USA: California Cow, fecal Sanger dideoxy sequencing; 454; Illumina; PacBio USDA, ARS, WRRC 1983.0x 94.71 98.95 0.18 99.98 0 GCF_002220775.1 1670 1729 1729 6 6 46 1 Campylobacter_sputorum_homd_HMT_776 GCA_002220795.1 HMT-776 RM3237 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-776 Campylobacter sputorum RM3237 1 1752258 29.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/220/795/GCA_002220795.1_ASM222079v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F;s__Campylobacter_F sputorum PRJNA66801 1031754 SAMN03737991 ASM222079v1 Complete Genome Newbler v. 2.6 2015-05-27T17:03:40.000 Unknown Unknown Sanger dideoxy sequencing; 454; Illumina; PacBio USDA, ARS, WRRC 633.0x 99.99 99.14 0.18 99.99 0 GCF_002220795.1 1758 1817 1817 5 6 47 1 Campylobacter_sputorum_homd_HMT_776 GCA_002222615.2 HMT-967 ATCC 43185 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-967 Bacteroides caccae ATCC 43185 1 4570803 41.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/222/615/GCA_002222615.2_ASM222261v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae PRJNA393727 47678 SAMN07340701 ASM222261v2 Complete Genome SPAdes v. 3.10.0 2017-07-10T17:28:03.540 missing missing Oxford Nanopore MinION, Illumina HiSeq 4000 University of North Carolina at Chapel Hill 17.0x 99.99 99.3 0.08 99.95 0.53 GCF_002222615.2 3667 3766 3766 13 15 70 1 Bacteroides_caccae_homd_HMT_967 GCA_002224675.1 HMT-979 Indica Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-979 Prevotella copri Indica 88 3920563 45.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/224/675/GCA_002224675.1_ASM222467v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella copri_A PRJNA393007 165179 SAMN07313576 ASM222467v1 Contig GS De Novo Assembler v. 2.3 2017-07-04T09:31:02.390 India stool 454 Translational Health Science and Technology Institute 100.0x 88.95 98.65 1.86 99.99 0.9 GCF_002224675.1 NMPZ01 3258 3359 3359 16 13 71 1 Prevotella_copri_homd_HMT_979 GCA_002237445.1 HMT-020 KEM232 Unnamed Cultivated Oral (Abundance: Scarce) HMT-020 Neisseria sp. HMT-020 KEM232 1 2371912 58.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/237/445/GCA_002237445.1_ASM223744v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp002237445 PRJNA394664 655307 SAMN07357172 ASM223744v1 Complete Genome CLCbio CLC Genomics v. Workbench 7.5.1 2017-07-17T08:02:02.160 South Korea: Gwangju smooth surface caries of tooth Illumina_MiSeq_300_PE Gwangju Health University 676.0x 99.2 0 99.98 0.11 GCF_002237445.1 2247 2312 2312 15 3 46 1 Neisseria_sp_HMT_020_homd_HMT_020 GCA_002240055.1 HMT-498 F0590 Unnamed Cultivated Oral (Abundance: Medium) HMT-498 Leptotrichia sp. HMT-498 F0590 1 2152181 29.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/240/055/GCA_002240055.1_ASM224005v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia sp002240055 PRJNA282954 712368 SAMN05413925 ASM224005v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p4.150482 2016-07-18T13:01:07.940 USA: Boston, MA Supragingival dental plaque, molar tooth PacBio The Forsyth Institute 98.0x 98.88 0 99.88 0.35 GCF_002240055.1 2076 2188 2188 52 15 44 1 Leptotrichia_sp_HMT_498_homd_HMT_498 GCA_002243215.1 HMT-662 09T494 Named Cultivated Nasal (Abundance: Medium) HMT-662 Finegoldia magna 09T494 20 1913853 31.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/243/215/GCA_002243215.1_ASM224321v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia;s__Finegoldia magna_J PRJNA383659 1260 SAMN06769904 ASM224321v1 Contig SPAdes v. v3.5 2017-04-20T08:14:03.757 Sweden: Orebro orthopedic joint implant Illumina GAII Aarhus University 100.0x 94.15 99.39 0.81 99.96 0.02 GCF_002243215.1 NDYG01 1827 1894 1894 23 6 37 1 Finegoldia_magna_homd_HMT_662 GCA_002243385.1 HMT-742 ATCC 700696 Named Cultivated Oral (Abundance: Scarce) HMT-742 Mogibacterium pumilum ATCC 700696 1 1862768 41.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/243/385/GCA_002243385.1_ASM224338v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium pumilum PRJNA282954 86332 SAMN03897725 ASM224338v1 Chromosome Newbler v. rd454_mapasm_v3.0_prerel_03112014 2015-07-23T20:18:24.000 Japan: Niigata Subgingival plaque, periodontal pocket Illumina MiSeq The Forsyth Institute 50.0x 97.99 0.71 91.78 1 GCF_002243385.1 1719 1816 1816 41 9 46 1 GCA_002243405.1 HMT-698 W7671 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto W7671 1 2126947 27.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/243/405/GCA_002243405.1_ASM224340v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_K PRJNA282954 671211 SAMN03897723 ASM224340v1 Chromosome Newbler v. rd454_mapasm_v3.0_prerel_03112014 2015-07-23T20:18:23.000 United Kingdom: London Subgingival plaque Illumina MiSeq The Forsyth Institute 96.0x 100 0 100 0.06 GCF_002243405.1 1973 2080 2080 19 24 63 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_002243705.1 HMT-182 DSM 2641T Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-182 Anoxybacillus flavithermus DSM 2641T 1 2812123 41.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/243/705/GCA_002243705.1_ASM224370v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus;s__Anoxybacillus flavithermus PRJNA383058 33934 SAMN06758772 ASM224370v1 Complete Genome SMRT analysis 2.3 v. HGAP protocol 2 2017-04-16T07:07:02.906 New Zealand hot spring PacBio Kyungpook National University 205.1x 99.4 0.56 100 0.14 GCF_002243705.1 2850 3078 3078 118 27 82 1 Anoxybacillus_flavithermus_homd_HMT_182 GCA_002248115.3 HMT-731 KPCTRSRTH07 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-731 Klebsiella pneumoniae KPCTRSRTH07 11 5827024 56.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/248/115/GCA_002248115.3_ASM224811v3 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella pneumoniae PRJNA389557 72407 SAMN07450602 ASM224811v3 Complete Genome Unicycler v. v0.4.7 2017-08-04T11:41:07.026 Thailand: Nakhon Pathom Rectal swab Illumina NextSeq 500, Oxford Nanopore MinION JCVI 161.0x 99.21 GCF_002248115.2 5510 5771 5771 146 25 89 1 Klebsiella_pneumoniae_homd_HMT_731 GCA_002250095.2 HMT-128 K93G Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis K93G 1 2584152 33.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/250/095/GCA_002250095.2_ASM225009v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA338738 28035 SAMN05591932 ASM225009v2 Complete Genome HGAP v. 2 2016-08-18T23:27:03.926 Hong Kong Groin PacBio HKU 293.0x 99.44 99.61 0.33 100 0.17 GCF_002250095.2 2400 2577 2577 86 20 70 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002250115.1 HMT-045 DSM 8716 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-045 Alkalihalobacillus clausii DSM 8716 1 4517459 44.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/250/115/GCA_002250115.1_ASM225011v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Shouchella;s__Shouchella clausii PRJNA376814 79880 SAMN06458367 ASM225011v1 Complete Genome SMRT analysis 2.3 v. HGAP protocol 2 2017-02-27T22:06:02.863 Denmark garden soil PacBio Kyungpook National University 204.2x 99.99 98.67 1 100 1.16 GCF_002250115.1 4442 4615 4615 75 22 75 1 Alkalihalobacillus_clausii_homd_HMT_045 GCA_002252535.1 HMT-544 LUP21 Named Cultivated Pathogen (Abundance: Scarce) HMT-544 Brucella anthropi LUP21 65 5582813 56.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/252/535/GCA_002252535.1_ASM225253v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Brucella;s__Brucella anthropi PRJNA391246 255457 SAMN07259926 ASM225253v1 Contig CLC Genomics Workbench v. 8.0 2017-06-21T07:39:03.590 Argentina Nodules of Lupinus honoratus Illumina HiSeq2500 Intercollegiate Faculty of Biotechnology UG&MUG 72.6x 100 0 100 1.9 GCF_002252535.1 NNRN01 5354 5475 5475 69 2 49 1 Brucella_anthropi_homd_HMT_544 GCA_002266475.1 HMT-768 KCOM 1157 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus KCOM 1157 4 2198106 43.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/266/475/GCA_002266475.1_ASM226647v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA270153 1310 SAMN03263586 ASM226647v1 Contig AllPaths_LG v. 47944; SSPACE v. 2.3.1; Gapcloser v. 1.21 2014-12-12T01:58:18.476 South Korea: Gwangju Illumina HiSeq Chosun University 1156.0x 98.9 98.88 0.75 99.99 1.71 GCF_002266475.1 NPOU01 2056 2163 2163 39 10 57 1 Streptococcus_sobrinus_homd_HMT_768 GCA_002266485.1 HMT-531 KCOM 1299 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans KCOM 1299 7 2291820 44.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/266/485/GCA_002266485.1_ASM226648v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA270148 714 SAMN03263581 ASM226648v1 Contig AllPaths v. 47944; SSPACE v. 2.3.1; Gapcloser v. 1.21 2014-12-12T00:47:18.430 South Korea: Gwangju Illumina HiSeq Chosun University 1545.0x 97.73 99.89 0.23 100 0.02 GCF_002266485.1 NPOT01 2168 2354 2354 125 10 50 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_002273005.1 HMT-207 NBT06-6 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense NBT06-6 76 2689254 65.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/273/005/GCA_002273005.1_ASM227300v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA396693 2026255 SAMN07460149 ASM227300v1 Contig SOAPdenovo v. 2.04 2017-08-08T05:40:03.313 Papua New Guinea Deep Sea Water Illumina MiSeq Shanghai Ocean University 521.0x 99.99 99.34 0.27 99.99 0.29 GCF_002273005.1 NQMQ01 2429 2494 2494 9 3 52 1 Corynebacterium_gottingense_homd_HMT_207 GCA_002276615.1 HMT-567 OG2-2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae OG2-2 193 2659121 33.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/276/615/GCA_002276615.1_ASM227661v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA375758 29380 SAMN06718492 ASM227661v1 Contig SPAdes v. 3.10.0 2017-04-13T04:55:05.650 Germany kefir Illumina HiSeq SysMilk 110.4x 98.65 99.81 0.27 100 0.02 GCF_002276615.1 NDFL01 2482 2604 2604 69 4 48 1 Staphylococcus_caprae_homd_HMT_567 GCA_002276695.1 HMT-587 OG2-1 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa OG2-1 85 2469903 53.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/276/695/GCA_002276695.1_ASM227669v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA375758 2047 SAMN06718484 ASM227669v1 Contig SPAdes v. 3.10.0 2017-04-13T04:55:05.055 Germany kefir Illumina HiSeq SysMilk 180.7x 96.63 99.34 0 100 0.18 GCF_002276695.1 NCWU01 2084 2157 2157 12 8 52 1 Rothia_dentocariosa_homd_HMT_587 GCA_002277935.1 HMT-880 BDGP3 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-880 Enterococcus durans BDGP3 2 2988928 38.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/277/935/GCA_002277935.1_ASM227793v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B durans PRJNA397225 53345 SAMN07510606 ASM227793v1 Complete Genome Celera Assembler v. 2015-09-11 2017-08-15T21:15:03.243 USA:94710 PacBio Lawrence Berkeley National Laboratory 150.0x 98.41 99.63 0.84 100 0.1 GCF_002277935.1 2723 2873 2873 62 18 69 1 Enterococcus_durans_homd_HMT_880 GCA_002285075.1 HMT-207 NML93-0607 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense NML93-0607 20 2571247 65.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/285/075/GCA_002285075.1_ASM228507v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA399534 2026255 SAMN07539808 ASM228507v1 Contig SPAdes v. 3.5.0 2017-08-22T17:45:05.770 Canada: Alberta blood Illumina MiSeq National Microbiology Laboratory/ Public Health Agency of Canada 109.0x 97.33 99.34 0.22 99.99 0 GCF_002285075.1 NSGO01 2319 2392 2392 10 6 56 1 Corynebacterium_gottingense_homd_HMT_207 GCA_002285085.1 HMT-207 NML 150383 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense NML 150383 22 2527537 65.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/285/085/GCA_002285085.1_ASM228508v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA399534 2029400 SAMN07539812 ASM228508v1 Contig SPAdes v. 3.5.0 2017-08-22T17:45:05.826 Canada: Prince Edwards Island tissue Illumina MiSeq National Microbiology Laboratory/ Public Health Agency of Canada 140.0x 99.34 0.22 99.97 0.01 GCF_002285085.1 NSGK01 2279 2355 2355 10 7 57 2 Corynebacterium_gottingense_homd_HMT_207 GCA_002285115.1 HMT-207 NML92-0415 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense NML92-0415 33 2543156 65.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/285/115/GCA_002285115.1_ASM228511v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA399534 2026255 SAMN07539807 ASM228511v1 Contig SPAdes v. 3.5.0 2017-08-22T17:45:05.753 Canada: Ontario midstream urine Illumina MiSeq National Microbiology Laboratory/ Public Health Agency of Canada 118.0x 97.19 99.34 0.04 99.99 0.02 GCF_002285115.1 NSGP01 2274 2348 2348 10 5 58 1 Corynebacterium_gottingense_homd_HMT_207 GCA_002285125.1 HMT-207 NML99-0020 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense NML99-0020 19 2483065 65.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/285/125/GCA_002285125.1_ASM228512v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA399534 2026255 SAMN07539809 ASM228512v1 Contig SPAdes v. 3.5.0 2017-08-22T17:45:05.786 Canada: Ontario unknown Illumina MiSeq National Microbiology Laboratory/ Public Health Agency of Canada 132.0x 97.13 99.34 0.05 99.96 0 GCF_002285125.1 NSGN01 2254 2328 2328 10 7 56 1 Corynebacterium_gottingense_homd_HMT_207 GCA_002285155.1 HMT-207 NML 120412 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense NML 120412 13 2597765 65.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/285/155/GCA_002285155.1_ASM228515v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA399534 2029401 SAMN07539811 ASM228515v1 Scaffold SPAdes v. 3.5.0 2017-08-22T17:45:05.813 Canada: British Columbia blood Illumina MiSeq National Microbiology Laboratory/ Public Health Agency of Canada 32.0x 98.68 0.09 99.99 0.05 GCF_002285155.1 NSGL01 2320 2401 2401 10 12 58 1 Corynebacterium_gottingense_homd_HMT_207 GCA_002285175.1 HMT-207 NML00-0156 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense NML00-0156 23 2516585 65.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/285/175/GCA_002285175.1_ASM228517v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA399534 2026255 SAMN07539810 ASM228517v1 Contig SPAdes v. 3.5.0 2017-08-22T17:45:05.800 Canada: Manitoba blood Illumina MiSeq National Microbiology Laboratory/ Public Health Agency of Canada 116.0x 97.07 99.34 0.05 99.96 0.02 GCF_002285175.1 NSGM01 2270 2343 2343 10 6 56 1 Corynebacterium_gottingense_homd_HMT_207 GCA_002286215.1 HMT-529 LA1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-529 Lactobacillus acidophilus LA1 1 1991195 34.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/286/215/GCA_002286215.1_ASM228621v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus PRJNA340059 1579 SAMN05631052 ASM228621v1 Complete Genome HGAP v. 3.0 2016-08-25T04:10:02.886 South Korea: Seoul feces PacBio Korea Food Research Institute 363.0x 99.91 98.94 0 99.97 0.41 GCF_002286215.1 1860 1977 1977 43 12 61 1 Lactobacillus_acidophilus_homd_HMT_529 GCA_002289235.2 HMT-707 FDAARGOS_256 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis FDAARGOS_256 2 1995178 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/289/235/GCA_002289235.2_ASM228923v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000298695 PRJNA231221 1975706 SAMN04875582 ASM228923v2 Contig CA v. 8.2 2016-04-20T14:41:11.000 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 1811.0x 99.87 1.2 99.99 0.23 GCF_002289235.2 NTGM02 1881 2008 2008 37 15 74 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002289235.2 HMT-707 FDAARGOS_256 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis FDAARGOS_256 2 1995178 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/289/235/GCA_002289235.2_ASM228923v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000298695 PRJNA231221 1975706 SAMN04875582 ASM228923v2 Contig CA v. 8.2 2016-04-20T14:41:11.000 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 1811.0x 99.87 1.2 99.99 0.23 GCF_002289235.2 NTGM02 1881 2008 2008 37 15 74 1 Streptococcus_oralis_HMT_071_398_707 GCA_002302395.1 HMT-775 KC1668 Named Cultivated Oral (Abundance: Medium) HMT-775 Capnocytophaga sputigena KC1668 1 3074746 38.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/302/395/GCA_002302395.1_ASM230239v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena PRJNA369395 1019 SAMN06289148 ASM230239v1 Complete Genome Canu v. 1.4 2017-02-01T16:30:04.863 USA: Massachusetts missing PacBio; Illumina MiSeq Centers for Disease Control and Prevention 263.6x 99.99 99.52 0 99.91 0.29 GCF_002302395.1 2766 2832 2832 7 12 46 1 Capnocytophaga_sputigena_homd_HMT_775 GCA_002302415.1 HMT-337 H1496 Named Cultivated Oral (Abundance: High) HMT-337 Capnocytophaga gingivalis H1496 1 2838633 40.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/302/415/GCA_002302415.1_ASM230241v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga gingivalis PRJNA369395 1017 SAMN06289147 ASM230241v1 Complete Genome Canu v. 1.4 2017-02-01T16:30:04.783 USA: Ohio sputum PacBio; Illumina MiSeq Centers for Disease Control and Prevention 211.3x 96.84 100 0 99.96 0.21 GCF_002302415.1 2704 2771 2771 6 9 51 1 Capnocytophaga_gingivalis_homd_HMT_337 GCA_002302495.1 HMT-775 D1179 Named Cultivated Oral (Abundance: Medium) HMT-775 Capnocytophaga sputigena D1179 1 2855148 38.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/302/495/GCA_002302495.1_ASM230249v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena PRJNA369395 1019 SAMN06754875 ASM230249v1 Complete Genome Canu v. 1.4 2017-04-13T16:54:03.623 Israel blood PacBio; Illumina MiSeq Centers for Disease Control and Prevention 737.4x 96.43 99.52 0 99.85 0.03 GCF_002302495.1 2525 2592 2592 8 12 46 1 Capnocytophaga_sputigena_homd_HMT_775 GCA_002302595.1 HMT-775 H4486 Named Cultivated Oral (Abundance: Medium) HMT-775 Capnocytophaga sputigena H4486 1 3098616 38.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/302/595/GCA_002302595.1_ASM230259v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena PRJNA369395 1019 SAMN06289150 ASM230259v1 Complete Genome Canu v. 1.4 2017-02-01T16:30:04.983 missing blood PacBio; Illumina MiSeq Centers for Disease Control and Prevention 503.7x 96.35 100 0 99.89 0.11 GCF_002302595.1 2792 2858 2858 6 12 47 1 Capnocytophaga_sputigena_homd_HMT_775 GCA_002302615.1 HMT-329 H6253 Named Cultivated Oral (Abundance: High) HMT-329 Capnocytophaga leadbetteri H6253 1 2504023 40.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/302/615/GCA_002302615.1_ASM230261v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga leadbetteri PRJNA369395 327575 SAMN06289149 ASM230261v1 Complete Genome Canu v. 1.4 2017-02-01T16:30:04.926 USA: Hawaii Bronchial aspirate PacBio; Illumina MiSeq Centers for Disease Control and Prevention 643.3x 95.62 99.05 0 99.91 0.07 GCF_002302615.1 2204 2270 2270 8 8 49 1 Capnocytophaga_leadbetteri_homd_HMT_329 GCA_002310875.1 HMT-676 T21 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-676 Proteus mirabilis T21 3 4286593 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/310/875/GCA_002310875.1_ASM231087v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus;s__Proteus mirabilis PRJNA340922 584 SAMN05715221 ASM231087v1 Complete Genome SMRT analysis v. 2.3.1 2016-08-29T22:19:06.883 China: Zhejiang sputum Pacbio Zhejiang University 100.0x 99.33 99.46 0 100 0.8 GCF_002310875.1 3965 4154 4154 82 22 84 1 Proteus_mirabilis_homd_HMT_676 GCA_002312885.1 HMT-775 H6490 Named Cultivated Oral (Abundance: Medium) HMT-775 Capnocytophaga sputigena H6490 2 2963948 38.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/312/885/GCA_002312885.1_ASM231288v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena PRJNA369395 1019 SAMN06289151 ASM231288v1 Contig Canu v. 1.4 2017-02-01T16:30:05.050 USA: Indiana Abscess PacBio; Illumina MiSeq Centers for Disease Control and Prevention 343.5x 96.4 99.52 0 99.89 0.8 GCF_002312885.1 NIBW01 2632 2699 2699 8 12 46 1 Capnocytophaga_sputigena_homd_HMT_775 GCA_002318615.1 HMT-649 NlUS07x1 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica NlUS07x1 60 2123177 52.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/318/615/GCA_002318615.1_ASM231861v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA384053 486 SAMN06827272 ASM231861v1 Contig SPAdes v. 3.6.2 2017-04-24T16:17:05.480 USA: Denver urethral swab Illumina HiSeq Harvard T.H. Chan School of Public Health 186.0x 97.06 99.92 0 100 0.05 GCF_002318615.1 NGBO01 1980 2058 2058 20 3 54 1 Neisseria_lactamica_homd_HMT_649 GCA_002351405.1 HMT-062 AH4003 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-062 Corynebacterium simulans AH4003 39 2637705 59.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/351/405/GCA_002351405.1_ASM235140v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium simulans PRJNA407641 38284 SAMN07660488 ASM235140v1 Scaffold SPAdes v. 3.10.0 2017-09-16T19:06:02.310 not applicable not applicable Illumina MiSeq San Diego State University 854.0x 84.41 99.56 0.58 99.99 0.73 GCF_002351405.1 NWBP01 2446 2513 2513 7 5 54 1 Corynebacterium_simulans_homd_HMT_062 GCA_002355195.1 HMT-643 OMA14 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia OMA14 2 3148117 43.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/355/195/GCA_002355195.1_ASM235519v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJDB2896 28131 SAMD00017481 ASM235519v1 Complete Genome Newbler version v. 2.6 2015-12-18T01:00:58.000 Japan 454 GS FLX; ABI 3130x; MiSeq Nagasaki University 96.37 99.26 0 99.96 0.09 GCF_002355195.1 2753 2826 2826 12 12 48 1 Prevotella_intermedia_homd_HMT_643 GCA_002355935.1 HMT-188 JCM 11412 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria JCM 11412 1 2588680 56.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/355/935/GCA_002355935.1_ASM235593v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJDB5208 172042 SAMD00064392 ASM235593v1 Complete Genome HGAP algorithm in the SMRT Analysis v. 2.3 2016-10-27T01:00:18.940 missing Mir space station PacBio RS II Osaka Dental University 200.0x 99.93 93.52 0.66 95.86 2.67 GCF_002355935.1 2792 2863 2863 13 8 49 1 Rothia_aeria_homd_HMT_188 GCA_002356055.1 HMT-644 TYG1620 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius TYG1620 1 2006877 37.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/356/055/GCA_002356055.1_ASM235605v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJDB3973 1338 SAMD00031898 ASM235605v1 Complete Genome CLC De Novo Assembler v. 6.5; Platanus v. 1.0.1; PRICE v. 1.0.1 2016-12-03T01:00:21.280 not applicable Illumina GAIIx; MiSeq; ABI 3730xl Pathogen Genomics Center, National Institute of Infectious Diseases 1000.0x 98.34 99.88 0.08 100 0.27 GCF_002356055.1 1957 2066 2066 35 12 61 1 Streptococcus_intermedius_homd_HMT_644 GCA_002356175.1 HMT-116 TW2795 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis TW2795 2 2486776 33.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/356/175/GCA_002356175.1_ASM235617v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJDB4225 29388 SAMD00041516 ASM235617v1 Complete Genome GS De Novo Assembler v. 2.0 2017-02-03T01:00:33.543 Japan:Tokyo 454 GS FLX;ABI 3730 Department of Bacteriology, Jichi medical University 99 99.81 0.1 100 0.03 GCF_002356175.1 2360 2486 2486 48 16 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_002356415.1 HMT-071 osk_001 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus osk_001 1 1889005 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/356/415/GCA_002356415.1_ASM235641v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJDB5718 1077464 SAMD00078884 ASM235641v1 Complete Genome HGAP v. 3 2017-07-15T01:00:37.503 Japan:Osaka, Osaka, Higashisum PacBio RS; Illumina MiSeq Osaka University 675.9x 92.74 99.87 0.25 99.99 0.05 GCF_002356415.1 1817 1937 1937 47 12 60 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_002356415.1 HMT-071 osk_001 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus osk_001 1 1889005 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/356/415/GCA_002356415.1_ASM235641v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJDB5718 1077464 SAMD00078884 ASM235641v1 Complete Genome HGAP v. 3 2017-07-15T01:00:37.503 Japan:Osaka, Osaka, Higashisum PacBio RS; Illumina MiSeq Osaka University 675.9x 92.74 99.87 0.25 99.99 0.05 GCF_002356415.1 1817 1937 1937 47 12 60 1 Streptococcus_oralis_HMT_071_398_707 GCA_002357995.1 HMT-734 KK0981 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae KK0981 1 2148476 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/357/995/GCA_002357995.1_ASM235799v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJDB5486 1313 SAMD00073590 ASM235799v1 Complete Genome SMRT Analysis v. 2.3 2017-01-26T01:00:38.456 Japan: Hyogo PacBio RS II Department of Infectious Diseases, Keio University School of Medicine 278.0x 98.64 99.42 0.2 100 0.1 GCF_002357995.1 2124 2279 2279 84 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_002359915.1 HMT-792 UBA2626 Named Cultivated Skin (Abundance: Medium) HMT-792 Anaerococcus nagyae UBA2626 63 1670242 30.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/359/915/GCA_002359915.1_ASM235991v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus nagyae PRJNA348753 1946040 SAMN06452947 ASM235991v1 Scaffold CLC de novo assembler v. 4.4.1 2017-02-27T11:09:55.320 USA:New York City metal Illumina University of Queensland 7.0x 82.85 0.61 87.19 1.66 DEOE01 1751 1789 1789 25 1 11 1 Anaerococcus_nagyae_homd_HMT_792 GCA_002381265.1 HMT-241 BI Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-241 Brochothrix thermosphacta BI 1 2647794 36.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/381/265/GCA_002381265.1_ASM238126v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta PRJNA407213 2756 SAMN07634393 ASM238126v1 Complete Genome HGAP v. V3 2017-09-12T11:40:05.990 USA: Philadelphia ground chicken PacBio USDA/ARS/Eastern Regional Research Center 109.0x 99.18 99.45 0 99.87 0.26 GCF_002381265.1 2457 2624 2624 52 28 86 1 Brochothrix_thermosphacta_homd_HMT_241 GCA_002386285.1 HMT-622 FDAARGOS_371 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii FDAARGOS_371 1 2121309 40.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/386/285/GCA_002386285.1_ASM238628v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA231221 1302 SAMN07312415 ASM238628v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2017-07-03T15:03:04.520 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 14.5x 95.7 99.81 0 99.98 0.05 GCF_002386285.1 2005 2104 2104 26 12 60 1 Streptococcus_gordonii_homd_HMT_622 GCA_002386345.1 HMT-707 FDAARGOS_367 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis FDAARGOS_367 1 2053209 40.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/386/345/GCA_002386345.1_ASM238634v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA231221 1303 SAMN07312411 ASM238634v1 Complete Genome Celera v. 8.3 2017-07-03T15:03:04.456 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 14.8x 94.64 99.87 0.45 100 0.08 GCF_002386345.1 1925 2050 2050 50 12 62 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002386345.1 HMT-707 FDAARGOS_367 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis FDAARGOS_367 1 2053209 40.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/386/345/GCA_002386345.1_ASM238634v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA231221 1303 SAMN07312411 ASM238634v1 Complete Genome Celera v. 8.3 2017-07-03T15:03:04.456 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 14.8x 94.64 99.87 0.45 100 0.08 GCF_002386345.1 1925 2050 2050 50 12 62 1 Streptococcus_oralis_HMT_071_398_707 GCA_002386365.1 HMT-681 FDAARGOS_369 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 FDAARGOS_369 2 2408770 59.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/386/365/GCA_002386365.1_ASM238636v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA231221 43675 SAMN07312413 ASM238636v1 Complete Genome Celera v. 8.2 2017-07-03T15:03:04.486 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 12.6x 94.27 99.33 0 100 0.07 GCF_002386365.1 1876 1950 1950 13 10 50 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_002386365.1 HMT-681 FDAARGOS_369 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 FDAARGOS_369 2 2408770 59.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/386/365/GCA_002386365.1_ASM238636v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJNA231221 43675 SAMN07312413 ASM238636v1 Complete Genome Celera v. 8.2 2017-07-03T15:03:04.486 USA:DC blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 12.6x 94.27 99.33 0 100 0.07 GCF_002386365.1 1876 1950 1950 13 10 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_002407165.1 HMT-128 FDAARGOS_377 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis FDAARGOS_377 1 2571633 33.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/407/165/GCA_002407165.1_ASM240716v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA231221 28035 SAMN07312421 ASM240716v1 Complete Genome Celera v. 8.2 2017-07-03T15:03:04.613 USA:DC abscess PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 17.6x 99.44 99.61 0 100 0.06 GCF_002407165.1 2381 2546 2546 84 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002417615.1 HMT-202 12230 MIT 2016 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum 12230 MIT 2016 234 2470496 26.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/417/615/GCA_002417615.1_ASM241761v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA412393 851 SAMN07710844 ASM241761v1 Contig SPAdes v. 3.10.0 2017-09-27T14:43:02.713 USA trans-trachea Illumina MiSeq MIT 61.2x 92.38 100 0.56 100 0.36 GCF_002417615.1 NXMD01 2388 2471 2471 25 9 48 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002438315.1 HMT-803 UBA6293 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-803 Enterococcus italicus UBA6293 74 2169309 39.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/438/315/GCA_002438315.1_ASM243831v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G;s__Enterococcus_G italicus PRJNA348753 1951739 SAMN06454416 ASM243831v1 Scaffold CLC de novo assembler v. 4.4.1 2017-02-27T11:13:17.830 USA:New York City metal Illumina University of Queensland 20.4x 99.01 0.02 99.99 0 DJUB01 2106 2165 2165 43 0 15 1 Enterococcus_italicus_homd_HMT_803 GCA_002441815.1 HMT-804 ATCC 19435 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-804 Lactococcus lactis ATCC 19435 76 2463410 35.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/441/815/GCA_002441815.1_ASM244181v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis PRJNA270383 1360 SAMN03267157 ASM244181v1 Contig SOAPdenovo v. 2 2014-12-16T21:15:39.863 missing missing Illumina MiSeq; Illumina HiSeq Inner Mongolia Agricultural University 100.0x 99.98 99.62 0.57 100 0.57 GCF_002441815.1 JXKB01 2434 2519 2519 41 4 39 1 Lactococcus_lactis_homd_HMT_804 GCA_002442515.1 HMT-241 BII Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-241 Brochothrix thermosphacta BII 1 2603084 36.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/442/515/GCA_002442515.1_ASM244251v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta PRJNA407213 2756 SAMN07682203 ASM244251v1 Complete Genome HGAP v. V3 2017-09-21T10:05:04.100 USA: Philadelphia ground chicken PacBio USDA/ARS/Eastern Regional Research Center 108.0x 99.18 99.45 0 99.86 0.25 GCF_002442515.1 2394 2560 2560 52 28 85 1 Brochothrix_thermosphacta_homd_HMT_241 GCA_002442915.1 HMT-141 JS7 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-141 Staphylococcus pasteuri JS7 3 2622223 31.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/442/915/GCA_002442915.1_ASM244291v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pasteuri PRJNA344823 45972 SAMN05831569 ASM244291v1 Complete Genome FALCON v. 0.3.0 2016-09-27T22:38:02.973 South Korea Korean fermented food PacBio Korea Food Research Institute 280.0x 98.98 99.17 0.29 99.99 0.78 GCF_002442915.1 2515 2658 2658 62 19 61 1 Staphylococcus_pasteuri_homd_HMT_141 GCA_002443035.1 HMT-152 B59671 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-152 Streptococcus thermophilus B59671 1 1821173 39.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/443/035/GCA_002443035.1_ASM244303v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus PRJNA395042 1308 SAMN07369158 ASM244303v1 Complete Genome HGAP v. 2.3 2017-07-19T12:06:04.630 USA:ERRC at Wyndmoor, PA raw milk PacBio USDA-Agricultural Research Service-Eastern Regional Research Center 542.0x 98.56 99.89 0.15 99.71 0.06 GCF_002443035.1 1932 2070 2070 52 18 67 1 Streptococcus_thermophilus_homd_HMT_152 GCA_002443115.1 HMT-354 32T Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis 32T 1 2398786 62.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/443/115/GCA_002443115.1_ASM244311v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA407870 1667168 SAMN07665299 ASM244311v1 Complete Genome SPAdes v. v3.1 2017-09-19T04:54:04.500 South Korea: Jinju Closed pus PacBio; IonTorrent Korea Centers for Disease Control and Prevention 300.0x 99.99 94.15 0.29 99.94 1.06 GCF_002443115.1 2178 2244 2244 6 10 49 1 Dermabacter_hominis_homd_HMT_354 GCA_002529085.1 HMT-613 WW11663 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia WW11663 140 3300179 47.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/085/GCA_002529085.1_ASM252908v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJNA401301 28112 SAMN07602664 ASM252908v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:05.110 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 12.0x 98.72 98.91 0.02 99.95 0.4 GCF_002529085.1 NSLJ01 2761 2836 2836 25 5 44 1 Tannerella_forsythia_homd_HMT_613 GCA_002529125.1 HMT-619 WW5127 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW5127 119 2367137 48.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/125/GCA_002529125.1_ASM252912v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602662 ASM252912v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:05.080 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 28.0x 98.54 99.92 0.31 99.99 0.07 GCF_002529125.1 NSLL01 2016 2082 2082 12 6 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529145.1 HMT-619 WW3039 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW3039 132 2334097 48.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/145/GCA_002529145.1_ASM252914v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602660 ASM252914v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:05.047 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 32.0x 98.47 99.92 0.31 99.99 0.07 GCF_002529145.1 NSLN01 1986 2050 2050 10 6 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529155.1 HMT-619 WW2903 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW2903 115 2377665 48.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/155/GCA_002529155.1_ASM252915v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602655 ASM252915v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:04.967 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 24.0x 98.34 99.92 0 99.99 0.03 GCF_002529155.1 NSLS01 2031 2100 2100 15 6 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529185.1 HMT-619 WW2866 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW2866 123 2314500 48.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/185/GCA_002529185.1_ASM252918v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602652 ASM252918v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:04.920 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 26.0x 98.46 99.76 0.1 99.99 0.05 GCF_002529185.1 NSLV01 1965 2027 2027 11 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529205.1 HMT-619 WW5019 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW5019 149 2307097 48.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/205/GCA_002529205.1_ASM252920v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602661 ASM252920v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:05.060 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 39.0x 98.59 99.92 0.31 100 0.05 GCF_002529205.1 NSLM01 1934 2002 2002 13 7 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529225.1 HMT-643 WW2834 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia WW2834 126 2804910 43.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/225/GCA_002529225.1_ASM252922v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA401301 28131 SAMN07602649 ASM252922v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:04.870 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 17.0x 96.4 99.32 0 99.97 0.21 GCF_002529225.1 NSLY01 2386 2450 2450 10 6 47 1 Prevotella_intermedia_homd_HMT_643 GCA_002529235.1 HMT-619 WW3040 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW3040 122 2218119 48.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/235/GCA_002529235.1_ASM252923v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602658 ASM252923v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:05.017 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 17.0x 98.44 99.92 0.47 100 0.07 GCF_002529235.1 NSLP01 1866 1941 1941 24 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529285.1 HMT-619 WW2931 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW2931 103 2319756 48.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/285/GCA_002529285.1_ASM252928v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602656 ASM252928v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:04.983 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 16.0x 98.62 99.92 0.16 99.98 0.06 GCF_002529285.1 NSLR01 2007 2072 2072 11 6 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529295.1 HMT-613 WW10960 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia WW10960 98 3312685 47.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/295/GCA_002529295.1_ASM252929v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJNA401301 28112 SAMN07602663 ASM252929v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:05.097 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 19.0x 98.59 98.91 1.15 99.94 0.04 GCF_002529295.1 NSLK01 2776 2847 2847 20 5 45 1 Tannerella_forsythia_homd_HMT_613 GCA_002529305.1 HMT-643 WW855 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia WW855 137 2688123 43.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/305/GCA_002529305.1_ASM252930v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA401301 28131 SAMN07602648 ASM252930v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:04.850 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 15.0x 96.44 99.32 0.34 99.81 0.06 GCF_002529305.1 NSLZ01 2240 2303 2303 13 4 45 1 Prevotella_intermedia_homd_HMT_643 GCA_002529345.1 HMT-619 WW2952 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW2952 162 2314846 48.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/345/GCA_002529345.1_ASM252934v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602657 ASM252934v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:05.000 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 10.0x 98.61 99.92 0.31 99.99 0.04 GCF_002529345.1 NSLQ01 1973 2045 2045 17 5 49 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529355.1 HMT-619 WW2885 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW2885 196 2402406 48.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/355/GCA_002529355.1_ASM252935v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602654 ASM252935v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:04.953 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 12.0x 98.66 99.92 0 100 0.02 GCF_002529355.1 NSLT01 2048 2118 2118 15 7 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529365.1 HMT-619 WW3102 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW3102 149 2293608 48.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/365/GCA_002529365.1_ASM252936v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602659 ASM252936v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:05.030 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 17.0x 98.47 99.92 0.63 99.98 0.02 GCF_002529365.1 NSLO01 1924 1996 1996 19 5 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529375.1 HMT-619 WW2842 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW2842 95 2250271 48.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/375/GCA_002529375.1_ASM252937v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602651 ASM252937v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:04.907 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 30.0x 98.48 99.92 0 100 0.05 GCF_002529375.1 NSLW01 1878 1943 1943 11 6 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529425.1 HMT-619 WW2096 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis WW2096 116 2333958 48.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/425/GCA_002529425.1_ASM252942v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA401301 837 SAMN07602650 ASM252942v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:04.887 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 12.0x 98.49 99.92 0 100 0.03 GCF_002529425.1 NSLX01 1987 2053 2053 15 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002529435.1 HMT-643 WW414 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia WW414 62 2620156 43.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/435/GCA_002529435.1_ASM252943v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA401301 28131 SAMN07602647 ASM252943v1 Contig SPAdes v. 3.6.2 2017-09-04T08:59:04.830 United Kingdom: London Subgingival plaque Illumina MiSeq University of Leicester 13.0x 96.78 98.99 0.47 99.52 0.02 GCF_002529435.1 NSMA01 2224 2285 2285 10 5 45 1 Prevotella_intermedia_homd_HMT_643 GCA_002554715.1 HMT-587 OG2-2 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa OG2-2 68 2446762 53.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/554/715/GCA_002554715.1_ASM255471v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA375758 2047 SAMN07759903 ASM255471v1 Contig SPAdes v. 3.10.0 2017-10-09T05:54:09.466 Germany kefir Illumina HiSeq SysMilk 360.0x 96.26 99.34 1.51 100 0.98 GCF_002554715.1 PDEV01 2077 2143 2143 12 4 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_002556585.1 HMT-669 M26417 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M26417 1 2247997 51.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/556/585/GCA_002556585.1_ASM255658v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA400487 487 SAMN07615714 ASM255658v1 Complete Genome HGAP v. 3 2017-09-07T15:15:06.250 USA Sterile site PacBio Centers for Disease Control 25.0x 97.34 99.83 0.21 100 0 GCF_002556585.1 2102 2193 2193 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_002573475.1 HMT-420 KCOM 1280 (= ChDC F318) Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM 1280 (= ChDC F318) 4 2674036 26.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/573/475/GCA_002573475.1_ASM257347v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA270136 76859 SAMN03263089 ASM257347v1 Contig AllPaths_LG v. 47944; SSPACE v. 2.3.1; GapCloser v. 1.21 2014-12-11T22:31:33.626 South Korea: Gwangju Illumina HiSeq KCOM 2056.0x 96.69 100 0 99.99 0.28 GCF_002573475.1 NJGJ01 2518 2610 2610 24 14 53 1 Fusobacterium_animalis_homd_HMT_420 GCA_002578695.1 HMT-552 CI878 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum CI878 73 2541539 63.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/578/695/GCA_002578695.1_ASM257869v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA380511 33010 SAMN06644708 ASM257869v1 Contig MIRA v. 4.0.2 2017-03-26T15:45:05.820 Switzerland:Zurich joint of pelvis Illumina HiSeq University of California, Los Angeles 190.0x 98.72 99.34 0.88 100 0.3 GCF_002578695.1 NBIO01 2324 2404 2404 22 6 51 1 Cutibacterium_avidum_homd_HMT_552 GCA_002578705.1 HMT-552 CI855 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum CI855 51 2541663 63.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/578/705/GCA_002578705.1_ASM257870v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA380511 33010 SAMN06644705 ASM257870v1 Contig MIRA v. 4.0.2 2017-03-26T15:45:05.603 Switzerland:Zurich joint of pelvis Illumina HiSeq University of California, Los Angeles 219.0x 98.66 100 0 100 0.26 GCF_002578705.1 NBIR01 2312 2389 2389 23 7 46 1 Cutibacterium_avidum_homd_HMT_552 GCA_002578765.1 HMT-552 CI853 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum CI853 41 2532456 63.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/578/765/GCA_002578765.1_ASM257876v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA380511 33010 SAMN06644704 ASM257876v1 Contig MIRA v. 4.0.2 2017-03-26T15:45:05.330 Switzerland:Zurich joint of pelvis Illumina HiSeq University of California, Los Angeles 114.0x 98.66 100 0 100 0.29 GCF_002578765.1 NBIS01 2310 2386 2386 22 7 46 1 Cutibacterium_avidum_homd_HMT_552 GCA_002578825.1 HMT-552 CI882 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum CI882 66 2497070 63.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/578/825/GCA_002578825.1_ASM257882v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA380511 33010 SAMN06644707 ASM257882v1 Contig MIRA v. 4.0.2 2017-03-26T15:45:05.763 Switzerland:Zurich joint of pelvis Illumina HiSeq University of California, Los Angeles 327.0x 98.72 99.34 0.07 100 0.15 GCF_002578825.1 NBIP01 2257 2339 2339 21 8 52 1 Cutibacterium_avidum_homd_HMT_552 GCA_002578835.1 HMT-552 CI828 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum CI828 30 2476142 63.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/578/835/GCA_002578835.1_ASM257883v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA380511 33010 SAMN06644706 ASM257883v1 Contig MIRA v. 4.0.2 2017-03-26T15:45:05.690 Switzerland:Zurich joint of pelvis Illumina HiSeq University of California, Los Angeles 249.0x 98.72 99.34 0 99.99 0.18 GCF_002578835.1 NBIQ01 2245 2323 2323 21 9 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_002591175.1 HMT-116 FDAARGOS_378 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis FDAARGOS_378 2 2485152 32.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/175/GCA_002591175.1_ASM259117v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA231221 29388 SAMN07312422 ASM259117v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2017-07-03T15:03:04.630 USA:DC CSF PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 18.7x 98.75 99.81 0.36 100 0.32 GCF_002591175.1 2344 2478 2478 52 19 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_002591215.1 HMT-128 FDAARGOS_381 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis FDAARGOS_381 2 2570702 33.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/215/GCA_002591215.1_ASM259121v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA231221 28035 SAMN07312425 ASM259121v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2017-07-03T15:03:04.676 USA:DC abscess PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 18.7x 99.44 99.61 0 100 0.08 GCF_002591215.1 2395 2563 2563 87 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002591465.1 HMT-202 KCOM 1274 (=ChDC F309) Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1274 (=ChDC F309) 53 2509794 26.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/465/GCA_002591465.1_ASM259146v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386729 76857 SAMN07125722 ASM259146v1 Scaffold SPAdes v. 3.8.2 2017-05-16T02:09:04.973 South Korea: Gwangju subgingival plaque Illumina HiSeq Chosun University 80.0x 97.07 100 1.12 100 1.97 GCF_002591465.1 NIRO01 2395 2473 2473 25 3 49 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002591475.1 HMT-202 KCOM 1267(=ChDC F290) Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1267(=ChDC F290) 28 2571390 27.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/475/GCA_002591475.1_ASM259147v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386725 76857 SAMN07125719 ASM259147v1 Scaffold SPAdes v. 3.8.2 2017-05-16T01:23:15.583 South Korea: Gwangju subgingival plaque Illumina HiSeq Chosun University 1506.0x 96.48 100 0 100 0.23 GCF_002591475.1 NIRM01 2530 2608 2608 26 6 45 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002591505.1 HMT-202 KCOM 1248 (=ChDC F113) Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1248 (=ChDC F113) 16 2544849 27.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/505/GCA_002591505.1_ASM259150v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386418 76857 SAMN06947016 ASM259150v1 Scaffold SPAdes v. 3.8.2 2017-05-12T01:37:04.736 South Korea: Gwangju subgingival plaque, gingivitis Illumina HiSeq Chosun University 1501.0x 96.08 100 1.12 99.99 0.23 GCF_002591505.1 NIRK01 2446 2532 2532 25 15 45 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002591515.1 HMT-202 KCOM 1271 (=ChDC F305) Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1271 (=ChDC F305) 9 2748372 26.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/515/GCA_002591515.1_ASM259151v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386727 76857 SAMN07125720 ASM259151v1 Scaffold SPAdes v. 3.8.2 2017-05-16T01:40:07.390 South Korea: Gwangju subgingival plaque Illumina HiSeq Chosun University 1399.0x 96.17 100 0 99.99 0.51 GCF_002591515.1 NIRN01 2686 2772 2772 24 15 46 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002591545.1 HMT-202 KCOM 1257 (=ChDC F186) Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1257 (=ChDC F186) 29 2489425 27.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/545/GCA_002591545.1_ASM259154v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386431 76857 SAMN06947112 ASM259154v1 Scaffold SPAdes v. 3.8.2 2017-05-12T04:04:04.716 South Korea: Gwangju subgingival plaque, gingivitis Illumina HiSeq Chosun University 1219.0x 96.13 100 0 99.99 0.15 GCF_002591545.1 NIRL01 2361 2445 2445 23 15 45 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002591555.1 HMT-202 KCOM 1002 (=ChDC F175) Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1002 (=ChDC F175) 2 2576233 27.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/555/GCA_002591555.1_ASM259155v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386425 76857 SAMN06947103 ASM259155v1 Scaffold SPAdes v. 3.8.2 2017-05-12T02:46:04.466 South Korea: Gwangju dental plaque Illumina HiSeq Chosun University 1379.0x 95.71 100 0 99.99 0.15 GCF_002591555.1 NIRJ01 2485 2568 2568 22 15 45 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002591585.1 HMT-202 KCOM 1278 (=ChDC F313) Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1278 (=ChDC F313) 34 2555193 27.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/585/GCA_002591585.1_ASM259158v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386735 76857 SAMN07125858 ASM259158v1 Scaffold SPAdes v. 3.8.2 2017-05-16T03:35:06.083 South Korea: Gwangju subgingival dental plaque Illumina HiSeq Chosun University 1295.0x 96.17 100 1.12 100 0.27 GCF_002591585.1 NIRP01 2403 2487 2487 26 12 45 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002591645.1 HMT-202 KCOM 1330 (=ChDC F330) Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1330 (=ChDC F330) 18 2577563 27.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/591/645/GCA_002591645.1_ASM259164v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA386736 76857 SAMN07125859 ASM259164v1 Scaffold SPAdes v. 3.8.2 2017-05-16T03:46:06.850 South Korea: Gwangju subgingival plaque Illumina HiSeq Chosun University 1249.0x 96.18 100 0 100 0.19 GCF_002591645.1 NIRQ01 2494 2582 2582 25 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002633865.1 HMT-550 CFSAN007894 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus CFSAN007894 2 2757659 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/633/865/GCA_002633865.1_ASM263386v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA494566 1280 SAMN03763989 ASM263386v1 Complete Genome HGAP v. 3.0 2015-06-05T15:13:23.000 USA environmental swab sponge bakery hallway PacBio FDA/CFSAN 585.0x 98.95 99.48 0.08 100 0.15 GCF_002633865.1 2505 2704 2704 118 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_002689225.1 HMT-559 MED728 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-559 Afipia broomeae MED728 49 5163516 61.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/689/225/GCA_002689225.1_ASM268922v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia;s__Afipia broomeae PRJNA391943 1871052 SAMN07618278 ASM268922v1 Contig Megahit v. 1.0.3, minimus2 v. 2.0.8 2017-09-07T19:28:06.880 Mediterranean Sea marine water sample Illumina HiSeq Tara Oceans Consortium 98.1 1.27 97.69 2.92 NZFD01 4953 5042 5042 32 2 54 1 Afipia_broomeae_homd_HMT_559 GCA_002694325.1 HMT-185 IN25 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-185 Microbacterium ginsengisoli IN25 94 2931884 70.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/694/325/GCA_002694325.1_ASM269432v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium ginsengisoli PRJNA391943 51671 SAMN07619480 ASM269432v1 Contig Megahit v. 1.0.3, minimus2 v. 2.0.8 2017-09-07T19:36:11.310 Indian Ocean Indian Monsoon Gyres Province Illumina HiSeq Tara Oceans Consortium 95.71 2.15 99.88 2.78 NZLX01 2806 2892 2892 8 1 75 2 Microbacterium_ginsengisoli_homd_HMT_185 GCA_002742685.1 HMT-182 KU2-6_11 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-182 Anoxybacillus flavithermus KU2-6_11 74 2646305 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/742/685/GCA_002742685.1_ASM274268v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus;s__Anoxybacillus flavithermus_E PRJNA415688 33934 SAMN07831762 ASM274268v1 Contig SPAdes v. 3.10 2017-10-25T00:53:07.062 Russia: Uzon Caldera, Kamchatk sediments Illumina MiSeq THE INSTITUTE OF CYTOLOGY AND GENETICS 10.0x 99.44 0.67 99.99 0.08 GCF_002742685.1 PEDM01 2741 2928 2928 150 7 29 1 Anoxybacillus_flavithermus_homd_HMT_182 GCA_002749495.1 HMT-104 TT13 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-104 Paracoccus yeei TT13 7 4620225 67.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/749/495/GCA_002749495.1_ASM274949v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus yeei PRJNA398110 147645 SAMN07501686 ASM274949v1 Complete Genome SMRTpipe HGAP v. 3.0 2017-08-12T01:35:10.816 South Korea: Changwon skin swab PacBio Changwon National University 178.0x 98.43 99.55 0 99.98 0.3 GCF_002749495.1 4442 4536 4536 29 9 55 1 Paracoccus_yeei_homd_HMT_104 GCA_002749995.1 HMT-200 KCOM 2880 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii KCOM 2880 3 2054883 27.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/749/995/GCA_002749995.1_ASM274999v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA415897 155615 SAMN07837311 ASM274999v1 Contig RS HGAP v. 3.0 2017-10-26T05:02:05.153 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 510.0x 97.47 100 0 99.99 0.03 GCF_002749995.1 PEIJ01 1878 1961 1961 20 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_002753835.1 HMT-643 KCOM 1653 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 1653 2 2951033 43.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/753/835/GCA_002753835.1_ASM275383v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416232 28131 SAMN07945748 ASM275383v1 Contig RS HGAP v. 3.0 2017-10-30T01:54:04.660 South Korea: Gwangju Buccal space abscess (#48) PacBio Korean Collection for Oral Microbiology 595.9x 96.55 99.32 0.34 99.97 0.33 GCF_002753835.1 PEKN01 2492 2566 2566 12 12 49 1 Prevotella_intermedia_homd_HMT_643 GCA_002753855.1 HMT-643 KCOM 1101 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 1101 4 2905571 43.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/753/855/GCA_002753855.1_ASM275385v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416230 28131 SAMN07945742 ASM275385v1 Contig RS HGAP v. 3.0 2017-10-30T01:43:04.440 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 381.1x 96.39 99.32 2.96 99.93 2.86 GCF_002753855.1 PEKM01 2515 2593 2593 12 12 53 1 Prevotella_intermedia_homd_HMT_643 GCA_002753935.1 HMT-619 KCOM 3131 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 3131 1 2359159 48.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/753/935/GCA_002753935.1_ASM275393v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA416024 837 SAMN07840095 ASM275393v1 Complete Genome RS HGAP v. 3.0 2017-10-26T23:16:04.573 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 167.1x 98.68 99.92 0.31 99.99 0.1 GCF_002753935.1 1982 2058 2058 10 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002753955.1 HMT-619 KCOM 2799 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 2799 1 2469365 48.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/753/955/GCA_002753955.1_ASM275395v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA415884 837 SAMN07836928 ASM275395v1 Complete Genome RS HGAP v. 3.0 2017-10-26T00:11:04.003 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 355.2x 98.47 99.92 0 99.99 0.21 GCF_002753955.1 2116 2205 2205 23 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002753975.1 HMT-619 KCOM 2801 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 2801 1 2478317 48.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/753/975/GCA_002753975.1_ASM275397v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA416018 837 SAMN07840081 ASM275397v1 Complete Genome RS HGAP v. 3.0 2017-10-26T22:38:04.630 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 419.2x 98.39 99.92 0 99.99 0.11 GCF_002753975.1 2137 2216 2216 13 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002754015.1 HMT-619 KCOM 2802 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 2802 1 2374087 48.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/754/015/GCA_002754015.1_ASM275401v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA416019 837 SAMN07840090 ASM275401v1 Complete Genome RS HGAP v. 3.0 2017-10-26T22:45:05.270 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 381.1x 98.48 99.92 0 99.99 0.03 GCF_002754015.1 2011 2106 2106 29 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002754035.1 HMT-619 KCOM 2803 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 2803 1 2353912 48.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/754/035/GCA_002754035.1_ASM275403v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA416020 837 SAMN07840091 ASM275403v1 Complete Genome RS HGAP v. 3.0 2017-10-26T22:51:05.067 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 216.9x 98.46 99.92 0 100 0.11 GCF_002754035.1 2002 2086 2086 18 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002754055.1 HMT-619 KCOM 2804 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 2804 1 2463791 48.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/754/055/GCA_002754055.1_ASM275405v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA416021 837 SAMN07840092 ASM275405v1 Complete Genome RS HGAP v. 3.0 2017-10-26T23:05:05.443 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 382.1x 98.36 99.61 0.31 99.99 0.02 GCF_002754055.1 2097 2180 2180 17 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002754075.1 HMT-619 KCOM 2805 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 2805 1 2482917 48.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/754/075/GCA_002754075.1_ASM275407v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA416023 837 SAMN07840094 ASM275407v1 Complete Genome RS HGAP v. 3.0 2017-10-26T23:11:04.807 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 362.7x 98.39 99.92 0 99.99 0.04 GCF_002754075.1 2101 2185 2185 18 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002754095.1 HMT-619 KCOM 3001 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 3001 1 2353520 48.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/754/095/GCA_002754095.1_ASM275409v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA416025 837 SAMN07840097 ASM275409v1 Complete Genome RS HGAP v. 3.0 2017-10-26T23:22:04.817 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 558.9x 98.36 99.92 0 99.99 0.03 GCF_002754095.1 1962 2042 2042 14 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002754115.1 HMT-619 KCOM 2796 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 2796 1 2476166 48.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/754/115/GCA_002754115.1_ASM275411v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA415687 837 SAMN07831761 ASM275411v1 Complete Genome RS HGAP v. 3.0 2017-10-25T00:10:05.782 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 393.1x 98.51 99.92 0 99.99 0.07 GCF_002754115.1 2099 2179 2179 14 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002754135.1 HMT-619 KCOM 2798 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 2798 1 2410673 48.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/754/135/GCA_002754135.1_ASM275413v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA415867 837 SAMN07836904 ASM275413v1 Complete Genome RS HGAP v. 3.0 2017-10-25T21:38:04.473 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 374.2x 98.53 99.92 0.31 100 1.1 GCF_002754135.1 2074 2151 2151 11 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002754155.1 HMT-619 KCOM 2800 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis KCOM 2800 1 2254720 48.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/754/155/GCA_002754155.1_ASM275415v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA415885 837 SAMN07836934 ASM275415v1 Complete Genome RS HGAP v. 3.0 2017-10-26T00:49:05.477 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 186.1x 98.59 99.92 0 99.99 0.09 GCF_002754155.1 1882 1966 1966 18 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002754815.1 HMT-245 FDAARGOS_362 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-245 Roseomonas mucosa FDAARGOS_362 8 5174209 70.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/754/815/GCA_002754815.1_ASM275481v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas mucosa PRJNA231221 2018065 SAMN07312406 ASM275481v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2017-07-03T15:03:04.376 USA:DC peripheral Blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 15.2x 100 0.17 100 0.61 GCF_002754815.1 4712 4818 4818 22 15 68 1 Roseomonas_mucosa_homd_HMT_245 GCA_002761215.1 HMT-871 HOT-871 Phylotype Uncultivated Oral (Abundance: Low) HMT-871 Patescibacteria [C1 O1 F1 G1] bacterium HMT-871 HOT-871 1 1184529 25.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/761/215/GCA_002761215.1_ASM276121v1 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__BD1-5;f__UBA6164;g__GN02-872;s__GN02-872 sp002761215 PRJNA348708 1540872 SAMN05914505 ASM276121v1 Complete Genome SPAdes v. 3.9; Geneious v. 10.0 2016-10-17T10:29:03.140 USA: Oak Ridge Illumina HiSeq; Illumina MiSeq Oak Ridge National Laboratory 500.0x 83.71 0 96.71 0.11 GCF_002761215.1 1313 1354 1354 1 6 34 0 Patescibacteria__C1_O1_F1_G1__bacterium_HMT_871_homd_HMT_871 GCA_002761215.1 HMT-871 HOT-871 Phylotype Uncultivated Oral (Abundance: Low) HMT-871 Patescibacteria [C1 O1 F1 G1] bacterium HMT-871 HOT-871 1 1184529 25.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/761/215/GCA_002761215.1_ASM276121v1 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__BD1-5;f__UBA6164;g__GN02-872;s__GN02-872 sp002761215 PRJNA348708 1540872 SAMN05914505 ASM276121v1 Complete Genome SPAdes v. 3.9; Geneious v. 10.0 2016-10-17T10:29:03.140 USA: Oak Ridge Illumina HiSeq; Illumina MiSeq Oak Ridge National Laboratory 500.0x 83.71 0 96.71 0.11 GCF_002761215.1 1313 1354 1354 1 6 34 0 Patescibacteria__C1_O1_F1_G1_HMT_871_872 GCA_002761915.1 HMT-202 KCOM 1265 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM 1265 2 2554714 26.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/761/915/GCA_002761915.1_ASM276191v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA416415 76857 SAMN07956181 ASM276191v1 Contig RS HGAP v. 3.0 2017-10-31T02:03:04.823 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 433.2x 96.07 100 1.12 100 0.23 GCF_002761915.1 PEQW01 2465 2552 2552 24 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_002761935.1 HMT-429 KCOM 1321 Named NVP Cultivated Oral (Abundance: High) HMT-429 Fusobacterium pseudoperiodonticum KCOM 1321 4 2298437 28.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/761/935/GCA_002761935.1_ASM276193v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJNA416418 2663009 SAMN07956183 ASM276193v1 Contig RS HGAP v. 3.0 2017-10-31T02:27:04.810 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 436.7x 97.01 100 0.56 99.99 0.19 GCF_002761935.1 PEQX01 2147 2229 2229 21 15 45 1 Fusobacterium_pseudoperiodonticum_homd_HMT_429 GCA_002761955.1 HMT-429 KCOM 1259 Named NVP Cultivated Oral (Abundance: High) HMT-429 Fusobacterium pseudoperiodonticum KCOM 1259 2 2413057 28.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/761/955/GCA_002761955.1_ASM276195v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJNA416419 2663009 SAMN07956184 ASM276195v1 Contig RS HGAP v. 3.0 2017-10-31T02:37:04.423 South Korea: Gwangju Tongue PacBio Korean Collection for Oral Microbiology 487.3x 100 0.56 100 0.01 GCF_002761955.1 PEQY01 2316 2401 2401 24 15 45 1 Fusobacterium_pseudoperiodonticum_homd_HMT_429 GCA_002761995.1 HMT-690 P1_CP Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum P1_CP 34 2094695 35.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/761/995/GCA_002761995.1_ASM276199v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA362951 143387 SAMN07448029 ASM276199v1 Contig SPAdes v. 3 2017-08-03T14:42:03.527 Spain Colorectal primary tumor MiSeq Dana-Farber Cancer Institute 55.0x 98.62 100 0 100 0.17 GCF_002761995.1 NPNF01 1977 2040 2040 20 3 39 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_002762005.1 HMT-420 P2_CP Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis P2_CP 112 2351018 26.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/762/005/GCA_002762005.1_ASM276200v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA362951 76859 SAMN07448031 ASM276200v1 Contig SPAdes v. 3 2017-08-03T14:42:03.560 Spain Colorectal primary tumor MiSeq Dana-Farber Cancer Institute 55.0x 96.54 100 0 100 0.07 GCF_002762005.1 NPND01 2228 2292 2292 20 3 40 1 Fusobacterium_animalis_homd_HMT_420 GCA_002762015.1 HMT-420 P2_LM Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis P2_LM 150 2346246 26.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/762/015/GCA_002762015.1_ASM276201v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA362951 76859 SAMN07448032 ASM276201v1 Contig SPAdes v. 3 2017-08-03T14:42:03.580 Spain Liver metastasis MiSeq Dana-Farber Cancer Institute 55.0x 96.55 100 0 99.99 0.07 GCF_002762015.1 NPNC01 2216 2280 2280 20 3 40 1 Fusobacterium_animalis_homd_HMT_420 GCA_002762025.1 HMT-690 P1_LM Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum P1_LM 35 2094200 35.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/762/025/GCA_002762025.1_ASM276202v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA362951 143387 SAMN07448030 ASM276202v1 Contig SPAdes v. 3 2017-08-03T14:42:03.546 Spain Liver metastasis MiSeq Dana-Farber Cancer Institute 55.0x 98.61 100 0 100 0.18 GCF_002762025.1 NPNE01 1976 2039 2039 21 3 38 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_002762425.1 HMT-643 KCOM 2069 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 2069 3 2730073 43.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/762/425/GCA_002762425.1_ASM276242v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA417213 28131 SAMN07980961 ASM276242v1 Contig RS HGAP v. 3.0 2017-11-06T02:27:04.840 South Korea: Gwangju endodontic infection PacBio Korean Collection for Oral Microbiology 352.8x 96.52 98.99 0.35 99.95 0.07 GCF_002762425.1 PESN01 2328 2402 2402 12 12 49 1 Prevotella_intermedia_homd_HMT_643 GCA_002763535.1 HMT-643 KCOM 2033 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 2033 1 2777805 43.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/535/GCA_002763535.1_ASM276353v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416397 28131 SAMN07955957 ASM276353v1 Complete Genome RS HGAP v. 3.0 2017-10-30T22:54:04.536 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 290.6x 96.44 98.99 0 99.89 0.04 GCF_002763535.1 2396 2467 2467 10 12 48 1 Prevotella_intermedia_homd_HMT_643 GCA_002763575.1 HMT-643 KCOM 2836 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 2836 1 2760702 43.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/575/GCA_002763575.1_ASM276357v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416409 28131 SAMN07956007 ASM276357v1 Complete Genome RS HGAP v. 3.0 2017-10-31T00:51:05.170 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 308.5x 96.34 99.32 0.08 99.99 0.05 GCF_002763575.1 2346 2418 2418 10 12 49 1 Prevotella_intermedia_homd_HMT_643 GCA_002763595.1 HMT-429 KCOM 1283 Named NVP Cultivated Oral (Abundance: High) HMT-429 Fusobacterium pseudoperiodonticum KCOM 1283 1 2222370 28.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/595/GCA_002763595.1_ASM276359v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJNA416417 2663009 SAMN07956182 ASM276359v1 Complete Genome RS HGAP v. 3.0 2017-10-31T02:21:04.916 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 260.3x 97.16 100 0.56 99.99 0.03 GCF_002763595.1 2089 2171 2171 21 15 45 1 Fusobacterium_pseudoperiodonticum_homd_HMT_429 GCA_002763625.1 HMT-429 KCOM 1261 Named NVP Cultivated Oral (Abundance: High) HMT-429 Fusobacterium pseudoperiodonticum KCOM 1261 1 2372880 28.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/625/GCA_002763625.1_ASM276362v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJNA416420 2663009 SAMN07956185 ASM276362v1 Complete Genome RS HGAP v. 3.0 2017-10-31T02:43:04.400 South Korea: Gwangju Tongue PacBio Korean Collection for Oral Microbiology 280.0x 97.18 100 0.56 99.99 0.03 GCF_002763625.1 2206 2286 2286 19 15 45 1 Fusobacterium_pseudoperiodonticum_homd_HMT_429 GCA_002763695.1 HMT-201 KCOM 1263 Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum KCOM 1263 1 2651118 27.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/695/GCA_002763695.1_ASM276369v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium periodonticum_D PRJNA416422 2663009 SAMN07956207 ASM276369v1 Complete Genome RS HGAP v. 3.0 2017-10-31T03:16:04.196 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 433.5x 95.62 100 1.69 100 0.07 GCF_002763695.1 2634 2717 2717 21 15 46 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_002763715.1 HMT-643 KCOM 1949 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 1949 2 2764740 43.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/715/GCA_002763715.1_ASM276371v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416391 28131 SAMN07955952 ASM276371v1 Complete Genome RS HGAP v. 3.0 2017-10-30T22:06:04.623 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 416.8x 96.46 99.32 0 99.92 0.12 GCF_002763715.1 2323 2394 2394 10 12 48 1 Prevotella_intermedia_homd_HMT_643 GCA_002763735.1 HMT-429 KCOM 1277 Named NVP Cultivated Oral (Abundance: High) HMT-429 Fusobacterium pseudoperiodonticum KCOM 1277 1 2324076 28.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/735/GCA_002763735.1_ASM276373v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJNA416424 2663009 SAMN07956209 ASM276373v1 Complete Genome RS HGAP v. 3.0 2017-10-31T03:54:04.380 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 433.9x 96.99 100 0 99.99 0.04 GCF_002763735.1 2249 2328 2328 18 15 45 1 Fusobacterium_pseudoperiodonticum_homd_HMT_429 GCA_002763745.1 HMT-643 KCOM 2837 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 2837 2 2890050 43.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/745/GCA_002763745.1_ASM276374v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416410 28131 SAMN07956008 ASM276374v1 Complete Genome RS HGAP v. 3.0 2017-10-31T01:05:05.200 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 395.8x 96.42 99.32 0 99.99 0.06 GCF_002763745.1 2498 2570 2570 11 12 48 1 Prevotella_intermedia_homd_HMT_643 GCA_002763775.1 HMT-429 KCOM 1282 Named NVP Cultivated Oral (Abundance: High) HMT-429 Fusobacterium pseudoperiodonticum KCOM 1282 1 2216236 28.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/775/GCA_002763775.1_ASM276377v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJNA416425 2663009 SAMN07956210 ASM276377v1 Complete Genome RS HGAP v. 3.0 2017-10-31T04:17:04.830 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 465.0x 96.89 100 0.16 99.98 0.08 GCF_002763775.1 2094 2172 2172 17 15 45 1 Fusobacterium_pseudoperiodonticum_homd_HMT_429 GCA_002763785.1 HMT-643 KCOM 2838 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 2838 2 2775833 43.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/785/GCA_002763785.1_ASM276378v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416411 28131 SAMN07956010 ASM276378v1 Complete Genome RS HGAP v. 3.0 2017-10-31T01:11:04.083 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 401.1x 96.5 99.21 0.68 99.96 0.03 GCF_002763785.1 2331 2406 2406 13 12 49 1 Prevotella_intermedia_homd_HMT_643 GCA_002763815.1 HMT-429 KCOM 2305 Named NVP Cultivated Oral (Abundance: High) HMT-429 Fusobacterium pseudoperiodonticum KCOM 2305 1 2273832 28.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/815/GCA_002763815.1_ASM276381v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJNA416427 2663009 SAMN07956241 ASM276381v1 Complete Genome RS HGAP v. 3.0 2017-10-31T04:28:04.563 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 337.5x 97.05 100 0.72 99.99 0.17 GCF_002763815.1 2140 2220 2220 19 15 45 1 Fusobacterium_pseudoperiodonticum_homd_HMT_429 GCA_002763845.1 HMT-643 KCOM 1933 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 1933 2 2737112 43.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/845/GCA_002763845.1_ASM276384v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416381 28131 SAMN07955950 ASM276384v1 Complete Genome RS HGAP v. 3.0 2017-10-30T21:54:04.683 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 278.6x 96.34 97.97 0 99.86 0.04 GCF_002763845.1 2383 2455 2455 10 12 49 1 Prevotella_intermedia_homd_HMT_643 GCA_002763875.1 HMT-201 KCOM 2555 Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum KCOM 2555 1 2477385 28.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/875/GCA_002763875.1_ASM276387v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJNA416428 2663009 SAMN07956248 ASM276387v1 Complete Genome RS HGAP v. 3.0 2017-10-31T04:35:06.453 South Korea: Gwangju Dental plaque PacBio Korean Collection for Oral Microbiology 441.6x 96.19 99.44 0.56 100 0.93 GCF_002763875.1 2329 2410 2410 19 15 46 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_002763915.1 HMT-201 KCOM 1262 Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum KCOM 1262 1 2643576 27.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/915/GCA_002763915.1_ASM276391v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium periodonticum_D PRJNA416413 2663009 SAMN07956033 ASM276391v1 Complete Genome RS HGAP v. 3.0 2017-10-31T01:49:05.133 South Korea: Gwangju Tongue PacBio Korean Collection for Oral Microbiology 372.6x 95.61 100 1.69 100 0.06 GCF_002763915.1 2622 2705 2705 21 15 46 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_002763925.1 HMT-429 KCOM 2653 Named NVP Cultivated Oral (Abundance: High) HMT-429 Fusobacterium pseudoperiodonticum KCOM 2653 1 2291059 28.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/925/GCA_002763925.1_ASM276392v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJNA416430 2663009 SAMN07956258 ASM276392v1 Complete Genome RS HGAP v. 3.0 2017-10-31T04:41:07.790 South Korea: Gwangju Tongue PacBio Korean Collection for Oral Microbiology 408.6x 96.91 100 0.72 99.99 0.02 GCF_002763925.1 2187 2262 2262 14 15 45 1 Fusobacterium_pseudoperiodonticum_homd_HMT_429 GCA_002763955.1 HMT-643 KCOM 1741 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 1741 2 2928459 43.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/955/GCA_002763955.1_ASM276395v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA417202 28131 SAMN07980911 ASM276395v1 Complete Genome RS HGAP v. 3.0 2017-11-06T01:34:05.550 South Korea: Gwangju Subgingival plaque PacBio Korean Collection for Oral Microbiology 348.9x 96.47 99.32 0 99.98 0.07 GCF_002763955.1 2534 2606 2606 11 12 48 1 Prevotella_intermedia_homd_HMT_643 GCA_002763975.1 HMT-643 KCOM 1944 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 1944 2 2813841 43.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/763/975/GCA_002763975.1_ASM276397v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA417207 28131 SAMN07980959 ASM276397v1 Complete Genome RS HGAP v. 3.0 2017-11-06T02:01:05.403 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 234.2x 96.33 99.32 0 99.98 0.08 GCF_002763975.1 2456 2528 2528 10 12 49 1 Prevotella_intermedia_homd_HMT_643 GCA_002764055.1 HMT-200 KCOM 2931 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii KCOM 2931 1 2087706 27.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/764/055/GCA_002764055.1_ASM276405v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA415900 155615 SAMN07837329 ASM276405v1 Complete Genome RS HGAP v. 3.0 2017-10-26T05:19:04.783 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 467.0x 97.48 100 0 99.99 0.16 GCF_002764055.1 1938 2020 2020 19 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_002775055.1 HMT-072 2230 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 2230 37 2898882 59.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/775/055/GCA_002775055.1_ASM277505v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA313269 43770 SAMN04517755 ASM277505v1 Contig MIRA v. 4.0 2016-02-26T08:38:03.000 Brazil: Rio de Janeiro blood IonTorrent Universidade Federal do Para 193.0x 98.59 99.23 1.8 99.99 2.73 GCF_002775055.1 LTBF01 2743 2812 2812 8 7 53 1 Corynebacterium_striatum_homd_HMT_072 GCA_002775105.1 HMT-072 2247 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 2247 24 2875402 59.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/775/105/GCA_002775105.1_ASM277510v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA313272 43770 SAMN04517757 ASM277510v1 Contig SPAdes v. 3.0 2016-02-26T09:57:02.000 Brazil:Rio de Janeiro NA IonTorrent Universidade Federal do Para 177.0x 98.5 96.2 2.78 95.48 3.46 GCF_002775105.1 LTBH01 3017 3084 3084 9 7 50 1 Corynebacterium_striatum_homd_HMT_072 GCA_002780495.1 HMT-425 5305 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 5305 112 2158137 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/780/495/GCA_002780495.1_ASM278049v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA386436 257758 SAMN06947348 ASM278049v1 Contig Newbler v. 3.0 2017-05-12T05:38:04.910 Spain sputum 454 Instituto de Salud Carlos III 21.0x 96.72 99.74 0.2 100 0.05 GCF_002780495.1 PDEO01 2120 2245 2245 72 4 48 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_002780525.1 HMT-425 CipR71 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CipR71 88 2139475 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/780/525/GCA_002780525.1_ASM278052v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA386436 257758 SAMN06947349 ASM278052v1 Contig Newbler v. 3.0 2017-05-12T05:42:04.950 Spain sputum 454 Instituto de Salud Carlos III 20.0x 98.71 99.82 0.2 99.99 0.63 GCF_002780525.1 PDEN01 2117 2239 2239 74 3 44 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_002794335.1 HMT-643 KCOM 1779 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 1779 3 2798400 43.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/794/335/GCA_002794335.1_ASM279433v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA417205 28131 SAMN07980927 ASM279433v1 Contig RS HGAP v. 3.0 2017-11-06T01:54:05.193 South Korea: Gwangju Mandibular osteomyelitis PacBio Korean Collection for Oral Microbiology 305.6x 96.43 99.32 0.68 99.92 0.1 GCF_002794335.1 PGGD01 2404 2475 2475 10 12 48 1 Prevotella_intermedia_homd_HMT_643 GCA_002797135.1 HMT-643 KCOM 1945 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 1945 2 3027672 43.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/797/135/GCA_002797135.1_ASM279713v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416382 28131 SAMN07955951 ASM279713v1 Contig RS HGAP v. 3.0 2017-10-30T22:00:08.226 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 399.4x 96.46 99.32 0.34 99.96 0.26 GCF_002797135.1 PENE01 2635 2707 2707 10 12 49 1 Prevotella_intermedia_homd_HMT_643 GCA_002797155.1 HMT-643 KCOM 2698 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 2698 2 2730832 43.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/797/155/GCA_002797155.1_ASM279715v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416399 28131 SAMN07955958 ASM279715v1 Contig RS HGAP v. 3.0 2017-10-30T23:02:04.996 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 400.8x 96.42 99.32 0.08 99.98 0.02 GCF_002797155.1 PENF01 2327 2398 2398 10 12 48 1 Prevotella_intermedia_homd_HMT_643 GCA_002797175.1 HMT-643 KCOM 2833 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 2833 4 2871118 43.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/797/175/GCA_002797175.1_ASM279717v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416406 28131 SAMN07955964 ASM279717v1 Contig RS HGAP v. 3.0 2017-10-31T00:21:04.640 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 349.1x 96.39 99.32 0 99.91 0.09 GCF_002797175.1 PENH01 2485 2557 2557 10 13 48 1 Prevotella_intermedia_homd_HMT_643 GCA_002797185.1 HMT-643 KCOM 2832 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 2832 3 3016889 43.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/797/185/GCA_002797185.1_ASM279718v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416405 28131 SAMN07955963 ASM279718v1 Contig RS HGAP v. 3.0 2017-10-31T00:15:05.576 South Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 271.0x 96.36 99.32 1.86 99.97 0.86 GCF_002797185.1 PENG01 2659 2732 2732 11 12 49 1 Prevotella_intermedia_homd_HMT_643 GCA_002803965.1 HMT-072 215 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 215 1 2993983 59.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/803/965/GCA_002803965.1_ASM280396v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA278886 43770 SAMN05374476 ASM280396v1 Complete Genome HGAP v. v.4 2016-07-11T16:50:04.940 USA:Boston sputum PacBio Brigham & Womens Hospital 500.0x 98.72 99.78 0.79 100 1.25 GCF_002803965.1 2800 2878 2878 10 12 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_002804085.1 HMT-072 216 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 216 1 3031488 59.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/804/085/GCA_002804085.1_ASM280408v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA278886 43770 SAMN05178544 ASM280408v1 Complete Genome HGAP v. v.4 2016-05-25T23:53:04.133 USA:Boston tracheal aspirate PacBio Brigham & Womens Hospital 500.0x 98.72 99.34 0.65 99.99 0.83 GCF_002804085.1 2852 2930 2930 9 12 56 1 Corynebacterium_striatum_homd_HMT_072 GCA_002813535.1 HMT-734 BHN97x Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae BHN97x 1 2125517 39.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/813/535/GCA_002813535.1_ASM281353v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA420094 1313 SAMN08105887 ASM281353v1 Complete Genome canu v. 2017-10 2017-11-28T15:48:03.843 Unknown PacBio St. Jude Childrens Research Hospital 100.0x 98.74 99.6 0.49 100 0.27 GCF_002813535.1 2102 2259 2259 86 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_002835695.1 HMT-328 16-1433 Named Cultivated Skin (Abundance: Scarce) HMT-328 Corynebacterium mastitidis 16-1433 65 2264319 69.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/835/695/GCA_002835695.1_ASM283569v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium mastitidis PRJNA421318 161890 SAMN08138579 ASM283569v1 Contig SPAdes v. 3.11.1 2017-12-06T11:32:04.207 USA: New York City skin Illumina MiSeq Bacterial Special Pathogens Branch (CDC) 197.8x 96.66 99.89 1.06 99.93 0.13 GCF_002835695.1 PJAF01 2150 2219 2219 12 3 53 1 Corynebacterium_mastitidis_homd_HMT_328 GCA_002838445.1 HMT-889 DRBB27 Named Cultivated Vaginal (Abundance: Medium) HMT-889 Bifidobacterium breve DRBB27 1 2435083 58.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/838/445/GCA_002838445.1_ASM283844v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium breve PRJNA384073 1685 SAMN06827975 ASM283844v1 Complete Genome SMRT Analysis v. Jan 2016 2017-04-24T17:52:02.680 Netherlands infant PacBio University College Cork 349.0x 98.52 100 0 99.98 0.29 GCF_002838445.1 2135 2208 2208 12 4 56 1 Bifidobacterium_breve_homd_HMT_889 GCA_002838665.1 HMT-889 NRBB27 Named Cultivated Vaginal (Abundance: Medium) HMT-889 Bifidobacterium breve NRBB27 1 2289838 58.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/838/665/GCA_002838665.1_ASM283866v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium breve PRJNA387692 1685 SAMN07160976 ASM283866v1 Complete Genome SMRT Analysis v. Jan 2016 2017-05-24T08:38:03.187 Netherlands PacBio University College Cork 147.0x 99 100 0 100 0.02 GCF_002838665.1 1916 1988 1988 12 4 55 1 Bifidobacterium_breve_homd_HMT_889 GCA_002838685.1 HMT-889 NRBB49 Named Cultivated Vaginal (Abundance: Medium) HMT-889 Bifidobacterium breve NRBB49 1 2289791 58.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/838/685/GCA_002838685.1_ASM283868v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium breve PRJNA387696 1685 SAMN07160977 ASM283868v1 Complete Genome SMRT Analysis v. Jan 2016 2017-05-24T08:43:02.340 Netherlands PacBio University College Cork 346.0x 99.01 100 0 100 0.02 GCF_002838685.1 1917 1989 1989 12 4 55 1 Bifidobacterium_breve_homd_HMT_889 GCA_002847525.1 HMT-701 UMB0018 Named Cultivated Oral (Abundance: High) HMT-701 Schaalia odontolytica UMB0018 30 2341511 65.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/525/GCA_002847525.1_ASM284752v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia odontolytica_B PRJNA316969 1660 SAMN08193632 ASM284752v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:04.516 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 159.7x 88.07 100 0.47 99.99 0.13 GCF_002847525.1 PKKM01 1930 1993 1993 9 4 49 1 Schaalia_odontolytica_homd_HMT_701 GCA_002847555.1 HMT-893 UMB0183 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 UMB0183 15 3015022 68.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/555/GCA_002847555.1_ASM284755v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA316969 544580 SAMN08193633 ASM284755v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:04.537 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 83.4x 96.53 100 0.47 100 0.13 GCF_002847555.1 PKKL01 2441 2510 2510 14 4 50 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_002847555.1 HMT-893 UMB0183 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 UMB0183 15 3015022 68.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/555/GCA_002847555.1_ASM284755v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA316969 544580 SAMN08193633 ASM284755v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:04.537 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 83.4x 96.53 100 0.47 100 0.13 GCF_002847555.1 PKKL01 2441 2510 2510 14 4 50 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_002847585.1 HMT-176 UMB0181 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii UMB0181 18 3127787 67.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/585/GCA_002847585.1_ASM284758v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA316969 1655 SAMN08193628 ASM284758v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:04.443 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 106.5x 96.65 100 0.47 100 0.02 GCF_002847585.1 PKKP01 2637 2705 2705 14 3 50 1 Actinomyces_naeslundii_homd_HMT_176 GCA_002847685.2 HMT-354 UMB0490 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis UMB0490 1 2302060 62.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/685/GCA_002847685.2_ASM284768v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA316969 36740 SAMN08193659 ASM284768v2 Complete Genome Flye; Pilon v. Flye 2.9; Pilon 1.24 2017-12-16T21:05:05.033 USA: Maywood, IL Nanopore; Illumina Loyola University Chicago 501.0x 95.95 94.15 0 99.97 0.04 GCF_002847685.2 2035 2100 2100 7 10 47 1 Dermabacter_hominis_homd_HMT_354 GCA_002847745.1 HMT-017 UMB0119 Named Cultivated Skin (Abundance: High) HMT-017 Anaerococcus octavius UMB0119 18 1979036 30.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/745/GCA_002847745.1_ASM284774v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus octavius PRJNA316969 54007 SAMN08193644 ASM284774v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:04.735 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 167.1x 98.36 99.39 0.91 99.72 0.46 GCF_002847745.1 PKGS01 1845 1925 1925 29 5 45 1 Anaerococcus_octavius_homd_HMT_017 GCA_002847765.1 HMT-198 UMB0064 Named Cultivated Oral (Abundance: Scarce) HMT-198 Alloscardovia omnicolens UMB0064 12 1841181 46.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/765/GCA_002847765.1_ASM284776v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia;s__Alloscardovia omnicolens PRJNA316969 419015 SAMN08193642 ASM284776v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:04.698 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 228.0x 98.78 99.94 0 96.39 0.09 GCF_002847765.1 PKGU01 1559 1618 1618 10 2 46 1 Alloscardovia_omnicolens_homd_HMT_198 GCA_002847785.1 HMT-047 UMB0042 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB0042 16 2481374 58.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/785/GCA_002847785.1_ASM284778v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA316969 43765 SAMN08193653 ASM284778v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:04.916 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 125.3x 94.66 99.91 0 100 0.01 GCF_002847785.1 PKHS01 2137 2206 2206 13 3 52 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_002847925.1 HMT-161 UMB0371 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula UMB0371 14 2150556 38.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/925/GCA_002847925.1_ASM284792v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_H PRJNA316969 29466 SAMN08193736 ASM284792v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:06.289 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 137.0x 96.14 100 0 99.99 0.2 GCF_002847925.1 PKHW01 1937 2018 2018 25 6 49 1 Veillonella_parvula_homd_HMT_161 GCA_002847985.1 HMT-101 UMB0210 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava UMB0210 22 2311158 48.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/985/GCA_002847985.1_ASM284798v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava_A PRJNA316969 33053 SAMN08193709 ASM284798v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:05.849 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 138.5x 95.71 100 0.23 100 0.11 GCF_002847985.1 PKJP01 2141 2211 2211 17 3 49 1 Neisseria_perflava_homd_HMT_101 GCA_002848085.1 HMT-543 UMB0142 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus UMB0142 59 1960871 38.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/848/085/GCA_002848085.1_ASM284808v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA316969 1328 SAMN08193725 ASM284808v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:06.106 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 153.5x 95.45 99.53 0.71 100 0.05 GCF_002848085.1 PKIH01 1952 2048 2048 41 5 49 1 Streptococcus_anginosus_homd_HMT_543 GCA_002849515.1 HMT-749 NRRL B-442 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-749 Lacticaseibacillus rhamnosus NRRL B-442 111 2974909 46.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/849/515/GCA_002849515.1_ASM284951v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus PRJNA427569 47715 SAMN08239957 ASM284951v1 Contig SPAdes v. v3.10.1 2017-12-26T11:39:03.073 USA missing Illumina MiSeq University of Connecticut 26.0x 99.99 99.46 1.62 99.96 0.07 GCF_002849515.1 PKQF01 2758 2857 2857 33 6 59 1 Lacticaseibacillus_rhamnosus_homd_HMT_749 GCA_002849795.1 HMT-313 CD3:33 Named Cultivated Oral (Abundance: High) HMT-313 Prevotella jejuni CD3 2 3913006 41.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/849/795/GCA_002849795.1_ASM284979v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella jejuni PRJNA413878 1177574 SAMN07770260 ASM284979v1 Complete Genome Newbler v. 2.6; Gap4 v. 4.11.2; Gapfiller v. 1.11; Contiguator v. 2.6 2017-10-11T07:39:03.033 Sweden: Umea biopsy of small intestine from child with celiac disease 454; Sanger Umea university 48.0x 99.91 99.32 0 99.99 0.06 GCF_002849795.1 3166 3237 3237 8 12 50 1 Prevotella_jejuni_homd_HMT_313 GCA_002850315.1 HMT-601 DAR1907 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis DAR1907 1 2727549 32.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/850/315/GCA_002850315.1_ASM285031v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA308322 1282 SAMN07444319 ASM285031v1 Complete Genome HGAP v. v3 2017-08-02T17:28:04.293 USA: New York blood PacBio University of Mississippi Medical Center 203.6x 99.54 99.81 0 100 0.07 GCF_002850315.1 2574 2736 2736 82 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_002850375.1 HMT-127 K1 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis K1 1 2253412 31.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/850/375/GCA_002850375.1_ASM285037v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA376656 145391 SAMN06678637 ASM285037v1 Complete Genome Newbler v. July 2016 2017-04-04T04:47:05.273 India:Anand bovine milk IonTorrent CENTER FOR INTERDISCIPLINARY STUDIES IN SCIENCE AND TECHNOLOGY 54.0x 98.63 99.1 0.65 99.98 0.21 GCF_002850375.1 2238 2359 2359 55 4 61 1 Staphylococcus_hominis_homd_HMT_127 GCA_002850575.1 HMT-565 CR-Eb1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-565 Enterobacter cancerogenus CR-Eb1 1 4796512 55.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/850/575/GCA_002850575.1_ASM285057v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter cancerogenus PRJNA420145 69218 SAMN08107552 ASM285057v1 Complete Genome HGAP v. 2 (smrtanalysis_2.3.0) 2017-11-29T00:24:03.913 South Korea: Daejeon gut (3-4th instar larva) PacBio Korea Research Institute of Bioscience and Biotechnology (KRIBB) 90.7x 98.93 100 0.36 100 0.02 GCF_002850575.1 4350 4612 4612 149 25 87 1 Enterobacter_cancerogenus_homd_HMT_565 GCA_002860765.1 HMT-758 UMB0028 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis UMB0028 14 2431001 43.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/860/765/GCA_002860765.1_ASM286076v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA316969 1304 SAMN08193733 ASM286076v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:06.237 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 309.5x 86.61 100 0 100 0.07 GCF_002860765.1 PKHZ01 2343 2436 2436 31 8 53 1 Streptococcus_sanguinis_homd_HMT_758 GCA_002860785.1 HMT-755 UMB0051 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius UMB0051 27 2377669 39.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/860/785/GCA_002860785.1_ASM286078v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA316969 1304 SAMN08193732 ASM286078v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:06.215 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 274.6x 96.1 99.9 0.32 100 0.21 GCF_002860785.1 PKIA01 2140 2237 2237 41 5 50 1 Streptococcus_salivarius_homd_HMT_755 GCA_002860825.1 HMT-677 UMB0079 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis UMB0079 25 1964794 40.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/860/825/GCA_002860825.1_ASM286082v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AT PRJNA316969 28037 SAMN08193729 ASM286082v1 Contig Velvet v. 1.2 2017-12-16T21:05:06.168 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 364.1x 93.7 99.74 0.6 100 0.06 GCF_002860825.1 PKID01 1836 1965 1965 63 8 57 1 Streptococcus_mitis_homd_HMT_677 GCA_002860865.1 HMT-677 UMB1341 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis UMB1341 26 2081765 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/860/865/GCA_002860865.1_ASM286086v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AT PRJNA316969 28037 SAMN08193728 ASM286086v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:06.151 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 344.3x 93.79 99.82 0.2 100 0.04 GCF_002860865.1 PKIE01 1955 2065 2065 52 6 51 1 Streptococcus_mitis_homd_HMT_677 GCA_002860885.1 HMT-707 UMB0008 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis UMB0008 14 1999792 41.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/860/885/GCA_002860885.1_ASM286088v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA316969 1458253 SAMN08193727 ASM286088v1 Contig Velvet v. 1.2 2017-12-16T21:05:06.136 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 492.3x 94.7 99.83 0.4 100 0.03 GCF_002860885.1 PKIF01 1905 2012 2012 51 5 50 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_002860885.1 HMT-707 UMB0008 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis UMB0008 14 1999792 41.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/860/885/GCA_002860885.1_ASM286088v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA316969 1458253 SAMN08193727 ASM286088v1 Contig Velvet v. 1.2 2017-12-16T21:05:06.136 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 492.3x 94.7 99.83 0.4 100 0.03 GCF_002860885.1 PKIF01 1905 2012 2012 51 5 50 1 Streptococcus_oralis_HMT_071_398_707 GCA_002860985.1 HMT-127 UMB0272 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis UMB0272 18 2218470 31.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/860/985/GCA_002860985.1_ASM286098v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA316969 1290 SAMN08193716 ASM286098v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:05.952 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 378.8x 99.14 99.38 0.85 99.99 0.05 GCF_002860985.1 PKIP01 2133 2259 2259 54 8 63 1 Staphylococcus_hominis_homd_HMT_127 GCA_002861015.1 HMT-681 UMB0024 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 UMB0024 9 2258154 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/015/GCA_002861015.1_ASM286101v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA316969 43675 SAMN08193715 ASM286101v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:05.938 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 366.0x 95.63 99.33 0 100 0.01 GCF_002861015.1 PKIQ01 1739 1808 1808 13 6 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_002861015.1 HMT-681 UMB0024 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 UMB0024 9 2258154 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/015/GCA_002861015.1_ASM286101v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA316969 43675 SAMN08193715 ASM286101v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:05.938 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 366.0x 95.63 99.33 0 100 0.01 GCF_002861015.1 PKIQ01 1739 1808 1808 13 6 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_002861025.1 HMT-587 UMB0083 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa UMB0083 11 2494324 53.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/025/GCA_002861025.1_ASM286102v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA316969 2047 SAMN08193714 ASM286102v1 Contig Velvet v. 1.2 2017-12-16T21:05:05.923 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 331.4x 96.69 99.34 0 100 0.1 GCF_002861025.1 PKIR01 2133 2200 2200 12 5 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_002861125.1 HMT-867 UMB0912 Named Cultivated Vaginal (Abundance: High) HMT-867 Gardnerella leopoldii UMB0912 4 1513749 42.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/125/GCA_002861125.1_ASM286112v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium leopoldii PRJNA316969 2792978 SAMN08193669 ASM286112v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:05.240 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 704.0x 98.91 100 0 99.68 0.18 GCF_002861125.1 PKHC01 1132 1195 1195 14 3 45 1 Gardnerella_leopoldii_homd_HMT_867 GCA_002861145.1 HMT-867 UMB0913 Named Cultivated Vaginal (Abundance: High) HMT-867 Gardnerella leopoldii UMB0913 4 1513612 42.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/145/GCA_002861145.1_ASM286114v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium leopoldii PRJNA316969 2792978 SAMN08193670 ASM286114v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:05.256 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 768.9x 98.9 100 0 99.67 0.18 GCF_002861145.1 PKHB01 1131 1194 1194 14 3 45 1 Gardnerella_leopoldii_homd_HMT_867 GCA_002861345.1 HMT-341 UMB0989 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-341 Corynebacterium coyleae UMB0989 38 2481760 61.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/345/GCA_002861345.1_ASM286134v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium coyleae PRJNA316969 53374 SAMN08193656 ASM286134v1 Contig Velvet v. 1.2 2017-12-16T21:05:04.972 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 209.4x 97.53 97.5 0.22 99.93 0.1 GCF_002861345.1 PKHP01 2320 2391 2391 9 9 52 1 Corynebacterium_coyleae_homd_HMT_341 GCA_002861365.1 HMT-341 UMB0147 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-341 Corynebacterium coyleae UMB0147 41 2436985 61.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/365/GCA_002861365.1_ASM286136v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium coyleae PRJNA316969 53374 SAMN08193655 ASM286136v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:04.952 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 285.0x 97.4 97.94 0.09 99.98 0.25 GCF_002861365.1 PKHQ01 2258 2328 2328 9 8 52 1 Corynebacterium_coyleae_homd_HMT_341 GCA_002861385.2 HMT-445 UMB0043 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 UMB0043 22 2645301 60.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/385/GCA_002861385.2_ASM286138v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA316969 2913502 SAMN08193654 ASM286138v2 Scaffold SPAdes v. 3.15 2017-12-16T21:05:04.933 USA: Maywood, IL Illumina Loyola University Chicago 198.0x 96.84 99.78 0 99.95 0.01 GCF_002861385.2 PKHR02 2443 2507 0 8 4 51 1 Corynebacterium_hesseae_homd_HMT_445 GCA_002861405.1 HMT-047 UMB0338 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB0338 39 2465364 58.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/405/GCA_002861405.1_ASM286140v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA316969 43765 SAMN08193652 ASM286140v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:04.895 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 181.9x 94.96 100 0.6 100 0.95 GCF_002861405.1 PKHT01 2114 2189 2189 14 7 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_002861485.1 HMT-198 UMB0006 Named Cultivated Oral (Abundance: Scarce) HMT-198 Alloscardovia omnicolens UMB0006 14 1802081 46.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/485/GCA_002861485.1_ASM286148v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia;s__Alloscardovia omnicolens PRJNA316969 419015 SAMN08193643 ASM286148v1 Contig Velvet v. 1.2 2017-12-16T21:05:04.718 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 363.9x 98.75 100 0 97.35 0.08 GCF_002861485.1 PKGT01 1497 1556 1556 10 2 46 1 Alloscardovia_omnicolens_homd_HMT_198 GCA_002861865.1 HMT-197 UMB0131 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-197 Kocuria rhizophila UMB0131 8 2833561 70.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/865/GCA_002861865.1_ASM286186v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria rhizophila PRJNA316969 72000 SAMN08193685 ASM286186v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:05.487 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 276.8x 98.29 98.36 0 99.99 0.77 GCF_002861865.1 PKJA01 2467 2540 2540 17 5 50 1 Kocuria_rhizophila_homd_HMT_197 GCA_002862065.1 HMT-867 UMB0682 Named Cultivated Vaginal (Abundance: High) HMT-867 Gardnerella leopoldii UMB0682 6 1601254 42.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/862/065/GCA_002862065.1_ASM286206v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium leopoldii PRJNA316969 2792978 SAMN08193671 ASM286206v1 Contig Velvet v. 1.2 2017-12-16T21:05:05.276 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 652.3x 99.12 100 0 99.93 0.39 GCF_002862065.1 PKJN01 1238 1302 1302 15 3 45 1 Gardnerella_leopoldii_homd_HMT_867 GCA_002863285.1 HMT-609 UMB0321 Named Cultivated Oral (Abundance: Medium) HMT-609 Neisseria flava UMB0321 47 2466093 51.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/863/285/GCA_002863285.1_ASM286328v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flava PRJNA316969 490 SAMN08193710 ASM286328v1 Scaffold Velvet v. 1.2 2017-12-16T21:05:05.863 USA: Maywood, IL Illumina HiSeq Loyola University Chicago 380.0x 94.74 99.67 0 99.99 0 GCF_002863285.1 PKJO01 2235 2309 2309 17 3 53 1 Neisseria_flava_homd_HMT_609 GCA_002863305.2 HMT-101 UMB0023 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava UMB0023 1 2344520 48.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/863/305/GCA_002863305.2_ASM286330v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava_A PRJNA316969 33053 SAMN08193708 ASM286330v2 Complete Genome Flye; Pilon v. Flye 2.9; Pilon 1.24 2017-12-16T21:05:05.834 USA: Maywood, IL Nanopore; Illumina Loyola University Chicago 549.0x 95.72 100 0.23 100 0.14 GCF_002863305.2 2144 2217 0 0 12 60 1 Neisseria_perflava_homd_HMT_101 GCA_002865925.1 HMT-072 2023 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 2023 55 2820414 59.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/865/925/GCA_002865925.1_ASM286592v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA281414 43770 SAMN03490149 ASM286592v1 Contig MIRA v. 3.9 2015-04-17T08:22:19.000 Brazil: teaching hospital in R patients IonTorrent UFMG 200.0x 98.53 97.03 0.71 98.5 2.41 GCF_002865925.1 LBCN01 2873 2945 2945 8 10 53 1 Corynebacterium_striatum_homd_HMT_072 GCA_002871315.1 HMT-677 UMB0079b Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis UMB0079b 24 1960083 40.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/871/315/GCA_002871315.1_ASM287131v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AT PRJNA316969 1458253 SAMN07580858 ASM287131v1 Scaffold Velvet v. 1.2 2017-08-30T23:28:04.080 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 161.6x 87.38 99.74 0.6 100 0.05 GCF_002871315.1 PNFQ01 1837 1954 1954 63 5 48 1 Streptococcus_mitis_homd_HMT_677 GCA_002871615.1 HMT-757 UMB0186 Named Cultivated Oral (Abundance: Medium) HMT-757 Gemella sanguinis UMB0186 36 1877482 29.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/871/615/GCA_002871615.1_ASM287161v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella sanguinis PRJNA316969 84135 SAMN07511414 ASM287161v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:05.333 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 278.8x 96.31 98.56 0 100 0.37 GCF_002871615.1 PNGT01 1758 1835 1835 29 6 41 1 Gemella_sanguinis_homd_HMT_757 GCA_002871735.1 HMT-450 UMB1300 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 UMB1300 64 2815167 61.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/871/735/GCA_002871735.1_ASM287173v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA316969 169292 SAMN07511397 ASM287173v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:05.053 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 97.8x 89.23 99.69 0 99.99 0.25 GCF_002871735.1 PNHI01 2561 2628 0 7 7 52 1 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_002871735.1 HMT-450 UMB1300 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 UMB1300 64 2815167 61.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/871/735/GCA_002871735.1_ASM287173v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA316969 169292 SAMN07511397 ASM287173v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:05.053 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 97.8x 89.23 99.69 0 99.99 0.25 GCF_002871735.1 PNHI01 2561 2628 0 7 7 52 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_002871755.1 HMT-049 UMB0869 Named Cultivated Skin (Abundance: High) HMT-049 Corynebacterium kroppenstedtii UMB0869 22 2516257 56.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/871/755/GCA_002871755.1_ASM287175v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium parakroppenstedtii PRJNA316969 2828363 SAMN07511398 ASM287175v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:05.076 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 119.7x 99.96 96.96 0 99.99 0.04 GCF_002871755.1 PNHH01 2151 2218 2218 15 3 48 1 Corynebacterium_kroppenstedtii_homd_HMT_049 GCA_002871935.1 HMT-312 UMB0240 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-312 Aerococcus viridans UMB0240 52 1921807 37.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/871/935/GCA_002871935.1_ASM287193v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;s__Aerococcus viridans_B PRJNA316969 1377 SAMN07511387 ASM287193v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:04.860 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 167.9x 85.14 98.9 0.55 99.81 0.04 GCF_002871935.1 PNHQ01 1751 1856 1856 42 7 55 1 Aerococcus_viridans_homd_HMT_312 GCA_002871975.1 HMT-866 UMB0286 Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii UMB0286 20 2107861 57.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/871/975/GCA_002871975.1_ASM287197v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJNA316969 55565 SAMN07511382 ASM287197v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:04.707 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 135.0x 99.53 0.51 99.21 0.35 GCF_002871975.1 PNHV01 1723 1795 1795 10 9 51 2 Actinomyces_graevenitzii_homd_HMT_866 GCA_002879575.1 HMT-644 32811 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius 32811 15 1971034 37.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/879/575/GCA_002879575.1_ASM287957v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA428930 1338 SAMN08324742 ASM287957v1 Scaffold CLC NGS Cell v. 10 2018-01-08T07:48:05.080 China:Hangzhou pyogenic fluids of percutaneous drainage Illumina HiSeq zhejiang University 120.0x 98.32 99.53 0 99.99 0.2 GCF_002879575.1 PNRH01 1924 2011 2011 36 3 47 1 Streptococcus_intermedius_homd_HMT_644 GCA_002879585.1 HMT-644 30309 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius 30309 12 1956646 37.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/879/585/GCA_002879585.1_ASM287958v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA428930 1338 SAMN08324741 ASM287958v1 Contig CLC NGS Cell v. 10 2018-01-08T07:48:05.057 China:Hangzhou pyogenic fluids of percutaneous drainage Illumina HiSeq zhejiang University 120.0x 98.3 99.88 0 100 0.25 GCF_002879585.1 PNRI01 1862 1952 1952 39 3 47 1 Streptococcus_intermedius_homd_HMT_644 GCA_002879755.1 HMT-644 LC4 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius LC4 15 1914382 37.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/879/755/GCA_002879755.1_ASM287975v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA428930 1338 SAMN08324743 ASM287975v1 Scaffold CLC NGS Cell v. 10 2018-01-08T07:48:05.100 China:Hangzhou pyogenic fluids of percutaneous drainage Illumina HiSeq zhejiang University 120.0x 98.57 100 0 100 0.21 GCF_002879755.1 PNRP01 1829 1909 1909 35 3 41 1 Streptococcus_intermedius_homd_HMT_644 GCA_002881355.1 HMT-537 SA85 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-537 Streptococcus agalactiae SA85 1 1849989 35.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/881/355/GCA_002881355.1_ASM288135v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae PRJNA369820 1311 SAMN06294300 ASM288135v1 Complete Genome Newbler v. 2.9 2017-02-03T12:57:05.286 Brazil brain IonTorrent Universidade Federal de Minas Gerais 210.0x 98.92 98.85 0.06 99.73 0.56 GCF_002881355.1 1920 2029 2029 26 18 64 1 Streptococcus_agalactiae_homd_HMT_537 GCA_002881535.1 HMT-537 SA220 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-537 Streptococcus agalactiae SA220 1 1841963 35.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/881/535/GCA_002881535.1_ASM288153v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae PRJNA369840 1311 SAMN06294315 ASM288153v1 Complete Genome Newbler v. 2.9 2017-02-03T12:57:06.056 Brazil brain IonTorrent Universidade Federal de Minas Gerais 188.0x 98.94 98.76 0.06 99.9 0.33 GCF_002881535.1 1881 1990 1990 27 18 63 1 Streptococcus_agalactiae_homd_HMT_537 GCA_002882375.1 HMT-537 SA330 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-537 Streptococcus agalactiae SA330 1 1842081 35.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/882/375/GCA_002882375.1_ASM288237v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae PRJNA369845 1311 SAMN06294319 ASM288237v1 Complete Genome Newbler v. 2.9 2017-02-03T12:57:06.283 Brazil brain IonTorrent Universidade Federal de Minas Gerais 222.0x 98.93 98.67 0.06 99.49 0.34 GCF_002882375.1 1896 2005 2005 27 18 63 1 Streptococcus_agalactiae_homd_HMT_537 GCA_002884615.1 HMT-142 UMB0834 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-142 Staphylococcus pettenkoferi UMB0834 22 2541352 38.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/884/615/GCA_002884615.1_ASM288461v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pettenkoferi PRJNA316969 170573 SAMN07511431 ASM288461v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:05.607 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 302.1x 96.16 98.9 2.35 99.99 0.13 GCF_002884615.1 PNGG01 2418 2535 2535 46 9 61 1 Staphylococcus_pettenkoferi_homd_HMT_142 GCA_002884635.1 HMT-562 UMB0536 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-562 Hoylesella buccalis UMB0536 40 3231435 45.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/884/635/GCA_002884635.1_ASM288463v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp902465605 PRJNA316969 28127 SAMN07511427 ASM288463v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:05.540 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 349.5x 95.33 99.29 0 99.94 0.03 GCF_002884635.1 PNGJ01 2782 2870 2870 25 9 53 1 Hoylesella_buccalis_homd_HMT_562 GCA_002884755.1 HMT-718 UMB0748 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae UMB0748 21 2069115 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/884/755/GCA_002884755.1_ASM288475v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA316969 729 SAMN07511415 ASM288475v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:05.350 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 536.9x 96.02 99.89 0 100 0.06 GCF_002884755.1 PNGS01 2005 2098 2098 27 12 53 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_002884795.1 HMT-868 UMB1642 Named Cultivated Vaginal (Abundance: High) HMT-868 Gardnerella swidsinskii UMB1642 4 1628789 41.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/884/795/GCA_002884795.1_ASM288479v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium swidsinskii PRJNA316969 2792979 SAMN07511411 ASM288479v1 Contig Velvet v. 1.2 2017-08-16T12:32:05.290 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 532.8x 98.34 100 0 99.99 0.33 GCF_002884795.1 PNGW01 1270 1335 1335 13 6 45 1 Gardnerella_swidsinskii_homd_HMT_868 GCA_002884815.1 HMT-846 UMB0663 Named Cultivated Vaginal (Abundance: High) HMT-846 Gardnerella piotii UMB0663 4 1597294 42.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/884/815/GCA_002884815.1_ASM288481v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium piotii PRJNA316969 33031 SAMN07511410 ASM288481v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:05.277 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 613.9x 98.95 100 0 100 0.19 GCF_002884815.1 PNGX01 1247 1312 1312 15 4 45 1 Gardnerella_piotii_homd_HMT_846 GCA_002884895.1 HMT-420 UMB0249 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis UMB0249 27 2455598 26.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/884/895/GCA_002884895.1_ASM288489v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA316969 851 SAMN07511405 ASM288489v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:05.203 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 536.3x 91.77 100 0 100 0.38 GCF_002884895.1 PNHC01 2275 2350 2350 20 7 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_002884935.1 HMT-184 UMB0792 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-184 Corynebacterium tuscaniense UMB0792 44 2254903 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/884/935/GCA_002884935.1_ASM288493v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuscaniense PRJNA316969 302449 SAMN07511399 ASM288493v1 Scaffold Velvet v. 1.2 2017-08-16T12:32:05.110 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 133.2x 98.05 98.55 0 99.99 0.05 GCF_002884935.1 PNHG01 2114 2178 2178 7 5 51 1 Corynebacterium_tuscaniense_homd_HMT_184 GCA_002886865.1 HMT-822 GG-186-10 Named Cultivated Pathogen (Abundance: Scarce) HMT-822 Mycobacterium tuberculosis GG-186-10 1 4411478 65.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/886/865/GCA_002886865.1_ASM288686v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium tuberculosis PRJNA422870 1773 SAMN08199268 ASM288686v1 Complete Genome bwa Reference alignment v. 0.7.1 2017-12-18T13:59:04.097 Guatemala Human patient Illumina HiSeq Duke University 327.0x 99.96 99.94 0 100 0.57 GCF_002886865.1 4062 4119 0 0 3 53 1 Mycobacterium_tuberculosis_homd_HMT_822 GCA_002891235.1 HMT-565 FDAARGOS_232 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-565 Enterobacter cancerogenus FDAARGOS_232 7 5179590 55.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/891/235/GCA_002891235.1_ASM289123v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter cancerogenus PRJNA231221 69218 SAMN04875569 ASM289123v1 Contig HGAP v. 3 2016-04-20T14:41:10.000 USA:DC wound swab PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 289.0x 98.95 100 0.88 100 0.09 GCF_002891235.1 POWA01 4821 5105 5105 170 25 88 1 Enterobacter_cancerogenus_homd_HMT_565 GCA_002892555.1 HMT-619 TDC 60 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis TDC 60 1 2334880 48.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/892/555/GCA_002892555.1_ASM289255v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA393092 837 SAMN07315161 ASM289255v1 Complete Genome canu v. 1.3 2017-07-05T06:44:02.590 missing Severe periodontal lesion PacBio CNRS - Universite de Rennes 1 30.4x 98.42 99.92 0.31 99.99 0.1 GCF_002892555.1 1960 2042 2042 16 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002892575.1 HMT-619 ATCC 33277 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis ATCC 33277 1 2379874 48.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/892/575/GCA_002892575.1_ASM289257v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA393092 431947 SAMN07315160 ASM289257v1 Complete Genome canu v. 1.3 2017-07-05T06:33:03.210 missing Human gingival sulcus PacBio CNRS - Universite de Rennes 1 29.9x 99.99 99.92 0 99.98 0.12 GCF_002892575.1 1985 2065 2065 14 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002892595.1 HMT-619 W83 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis W83 1 2343999 48.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/892/595/GCA_002892595.1_ASM289259v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA393092 837 SAMN07315163 ASM289259v1 Complete Genome canu v. 1.3 2017-07-05T06:49:02.953 missing Human clinical specimen PacBio CNRS - Universite de Rennes 1 29.7x 98.56 99.92 0 99.98 0.04 GCF_002892595.1 1995 2079 2079 18 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_002894165.1 HMT-798 DNF00076 Named Cultivated Vaginal (Abundance: Medium) HMT-798 Prevotella timonensis DNF00076 22 3000907 42.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/894/165/GCA_002894165.1_ASM289416v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella timonensis PRJNA339004 386414 SAMN05578556 ASM289416v1 Contig Geneious-Geneiouss own assembler v. 8.1.8 2016-08-15T17:56:03.296 USA: Seattle vagina Illumina University of Washington 24.0x 96.06 99.29 1.17 99.97 0.11 GCF_002894165.1 NBAX01 2510 2584 2584 10 10 53 1 Prevotella_timonensis_homd_HMT_798 GCA_002901705.1 HMT-128 NCTC 12217 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis NCTC 12217 20 2519514 33.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/901/705/GCA_002901705.1_ASM290170v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA339206 28035 SAMN06177169 ASM290170v1 Scaffold Velvet v. 1.2.10 2016-12-23T07:51:16.406 United Kingdom: London Axillary lymph node Illumina MiSeq Modernising Medical Microbiology 35.2x 99.95 99.61 0 100 0.08 GCF_002901705.1 PPPV01 2347 2477 2477 81 4 44 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_002901765.1 HMT-076 NCTC 11044 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NCTC 11044 31 2401190 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/901/765/GCA_002901765.1_ASM290176v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA339206 1292 SAMN06177168 ASM290176v1 Scaffold Velvet v. 1.2.10 2016-12-23T07:51:15.206 United Kingdom: London skin Illumina MiSeq Modernising Medical Microbiology 35.2x 99.98 99.73 0 100 0.09 GCF_002901765.1 PPPW01 2304 2409 2409 47 6 51 1 Staphylococcus_warneri_homd_HMT_076 GCA_002901805.1 HMT-120 NCTC 11042 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus NCTC 11042 92 2472399 32.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/901/805/GCA_002901805.1_ASM290180v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA339206 1283 SAMN06177164 ASM290180v1 Scaffold Velvet v. 1.2.10 2016-12-23T07:51:09.900 United Kingdom: London skin Illumina MiSeq Modernising Medical Microbiology 35.2x 99.95 99.36 0 99.99 0.05 GCF_002901805.1 PPQA01 2387 2517 2517 74 4 51 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_002901845.1 HMT-127 NCTC 11320 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis NCTC 11320 30 2204528 31.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/901/845/GCA_002901845.1_ASM290184v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA339206 145391 SAMN06177160 ASM290184v1 Scaffold Velvet v. 1.2.10 2016-12-23T07:51:03.570 United Kingdom: London skin Illumina MiSeq Modernising Medical Microbiology 47.6x 99.94 99.24 0.02 99.99 0.04 GCF_002901845.1 PPQE01 2148 2261 2261 53 6 53 1 Staphylococcus_hominis_homd_HMT_127 GCA_002901875.1 HMT-601 NCTC 11047 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis NCTC 11047 62 2442385 32.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/901/875/GCA_002901875.1_ASM290187v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA339206 1282 SAMN05978027 ASM290187v1 Scaffold Velvet v. 1.2.10 2016-11-03T12:57:50.453 United Kingdom: London Nose Illumina MiSeq Modernising Medical Microbiology 38.7x 99.93 99.81 0 99.98 0.05 GCF_002901875.1 PPQG01 2238 2368 2368 72 4 53 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_002902325.1 HMT-116 NCTC 11045 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis NCTC 11045 51 2434909 32.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/902/325/GCA_002902325.1_ASM290232v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA339206 72758 SAMN06177166 ASM290232v1 Scaffold Velvet v. 1.2.10 2016-12-23T07:51:12.130 United Kingdom: London skin Illumina MiSeq Modernising Medical Microbiology 38.8x 99.95 99.81 0.06 99.99 0.31 GCF_002902325.1 PPPY01 2366 2485 2485 56 6 56 1 Staphylococcus_capitis_homd_HMT_116 GCA_002902365.1 HMT-117 NCTC 11041 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-117 Staphylococcus cohnii NCTC 11041 69 2637875 32.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/902/365/GCA_002902365.1_ASM290236v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus cohnii PRJNA339206 74704 SAMN06177162 ASM290236v1 Scaffold Velvet v. 1.2.10 2016-12-23T07:51:07.376 United Kingdom: London skin Illumina MiSeq Modernising Medical Microbiology 26.8x 99.94 98.9 0 100 0.2 GCF_002902365.1 PPQC01 2571 2676 2676 51 4 49 1 Staphylococcus_cohnii_homd_HMT_117 GCA_002902455.1 HMT-331 NCTC 12101 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis NCTC 12101 103 2201622 37.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/902/455/GCA_002902455.1_ASM290245v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJNA339206 29379 SAMN05978007 ASM290245v1 Scaffold Velvet v. 1.2.10 2016-11-03T12:57:30.340 United Kingdom: London external ear Illumina MiSeq Modernising Medical Microbiology 38.9x 99.99 99.45 0 99.99 0.01 GCF_002902455.1 PPQW01 2090 2203 2203 42 10 60 1 Staphylococcus_auricularis_homd_HMT_331 GCA_002902685.1 HMT-142 CCUG 51270 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-142 Staphylococcus pettenkoferi CCUG 51270 122 2455272 38.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/902/685/GCA_002902685.1_ASM290268v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pettenkoferi PRJNA339206 170573 SAMN05977985 ASM290268v1 Scaffold Velvet v. 1.2.10 2016-11-03T12:57:11.316 Sweden: Gothenburg blood Illumina MiSeq Modernising Medical Microbiology 46.8x 99.99 98.9 2.35 99.99 0.01 GCF_002902685.1 PPRN01 2301 2416 2416 46 7 61 1 Staphylococcus_pettenkoferi_homd_HMT_142 GCA_002902725.1 HMT-567 NCTC 12196 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae NCTC 12196 101 2606761 33.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/902/725/GCA_002902725.1_ASM290272v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA339206 29380 SAMN05977978 ASM290272v1 Scaffold Velvet v. 1.2.10 2016-11-03T12:57:05.370 United Kingdom: London milk Illumina MiSeq Modernising Medical Microbiology 62.2x 99.99 99.81 0 100 0.06 GCF_002902725.1 PPRT01 2468 2612 2612 78 7 58 1 Staphylococcus_caprae_homd_HMT_567 GCA_002906595.1 HMT-120 83131A Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 83131A 2 2610865 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/906/595/GCA_002906595.1_ASM290659v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA417990 1283 SAMN08013134 ASM290659v1 Complete Genome Unicycler v. v0.4.1 2017-11-11T05:26:06.217 Netherlands: Groningen hospital Illumina MiSeq; minION UMCG 196.0x 99.3 99.62 0.14 99.99 0.06 GCF_002906595.1 2478 2656 2656 95 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_002906615.1 HMT-120 83131B Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 83131B 3 2612666 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/906/615/GCA_002906615.1_ASM290661v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA417990 1283 SAMN08161435 ASM290661v1 Complete Genome Unicycler v. v0.4.1 2017-12-11T13:16:05.790 Netherlands: Groningen hospital Illumina MiSeq; MinION UMCG 200.0x 99.32 99.62 0 99.99 0.06 GCF_002906615.1 2480 2658 2658 95 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_002912505.1 HMT-433 AAUH-2HCtra Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-2HCtra 97 2003790 39.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/505/GCA_002912505.1_ASM291250v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AW PRJNA395841 199 SAMN08200471 ASM291250v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.383 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.72 99.51 1.3 99.95 0.21 GCF_002912505.1 POYW01 1924 1970 0 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_002912505.1 HMT-433 AAUH-2HCtra Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-2HCtra 97 2003790 39.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/505/GCA_002912505.1_ASM291250v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AW PRJNA395841 199 SAMN08200471 ASM291250v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.383 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.72 99.51 1.3 99.95 0.21 GCF_002912505.1 POYW01 1924 1970 0 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002912595.1 HMT-433 AAUH-47UCil Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-47UCil 73 1945076 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/595/GCA_002912595.1_ASM291259v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AX PRJNA395841 199 SAMN08200465 ASM291259v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.300 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.71 99.51 0.63 99.96 0.23 GCF_002912595.1 POZC01 1879 1925 1925 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_002912595.1 HMT-433 AAUH-47UCil Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-47UCil 73 1945076 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/595/GCA_002912595.1_ASM291259v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AX PRJNA395841 199 SAMN08200465 ASM291259v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.300 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.71 99.51 0.63 99.96 0.23 GCF_002912595.1 POZC01 1879 1925 1925 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002912605.1 HMT-433 AAUH-48UCil-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-48UCil-a 61 1971116 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/605/GCA_002912605.1_ASM291260v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA395841 199 SAMN08200467 ASM291260v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.330 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.59 99.51 0 99.98 0.24 GCF_002912605.1 POZA01 1905 1950 1950 3 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_002912605.1 HMT-433 AAUH-48UCil-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-48UCil-a 61 1971116 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/605/GCA_002912605.1_ASM291260v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA395841 199 SAMN08200467 ASM291260v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.330 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.59 99.51 0 99.98 0.24 GCF_002912605.1 POZA01 1905 1950 1950 3 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002912675.1 HMT-433 AAUH-47UCil-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-47UCil-a 93 1923545 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/675/GCA_002912675.1_ASM291267v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AX PRJNA395841 199 SAMN08200458 ASM291267v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.193 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.75 99.51 0.07 99.94 0.24 GCF_002912675.1 POZJ01 1864 1910 0 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_002912675.1 HMT-433 AAUH-47UCil-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-47UCil-a 93 1923545 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/675/GCA_002912675.1_ASM291267v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AX PRJNA395841 199 SAMN08200458 ASM291267v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.193 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.75 99.51 0.07 99.94 0.24 GCF_002912675.1 POZJ01 1864 1910 0 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002912705.1 HMT-433 AAUH-10HCdes Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-10HCdes 56 1895385 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/705/GCA_002912705.1_ASM291270v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200455 ASM291270v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.133 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.58 99.51 0.32 99.99 0.08 GCF_002912705.1 POZM01 1850 1895 1895 4 2 38 1 Campylobacter_concisus_HMT_433_575 GCA_002912705.1 HMT-433 AAUH-10HCdes Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-10HCdes 56 1895385 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/705/GCA_002912705.1_ASM291270v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200455 ASM291270v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.133 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.58 99.51 0.32 99.99 0.08 GCF_002912705.1 POZM01 1850 1895 1895 4 2 38 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002912735.1 HMT-433 AAUH-10HCdes3 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-10HCdes3 66 1910929 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/735/GCA_002912735.1_ASM291273v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200454 ASM291273v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.120 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.55 99.51 0.32 99.99 0.15 GCF_002912735.1 POZN01 1864 1912 1912 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_002912735.1 HMT-433 AAUH-10HCdes3 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-10HCdes3 66 1910929 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/735/GCA_002912735.1_ASM291273v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200454 ASM291273v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.120 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.55 99.51 0.32 99.99 0.15 GCF_002912735.1 POZN01 1864 1912 1912 4 2 41 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002912805.1 HMT-433 AAUH-10HCdes4 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-10HCdes4 98 1900837 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/805/GCA_002912805.1_ASM291280v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200448 ASM291280v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.040 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.56 99.51 0.32 99.99 0.16 GCF_002912805.1 POZT01 1857 1902 0 4 2 38 1 Campylobacter_concisus_HMT_433_575 GCA_002912805.1 HMT-433 AAUH-10HCdes4 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-10HCdes4 98 1900837 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/805/GCA_002912805.1_ASM291280v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200448 ASM291280v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.040 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.56 99.51 0.32 99.99 0.16 GCF_002912805.1 POZT01 1857 1902 0 4 2 38 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002912895.1 HMT-575 AAUH-2010376221 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-2010376221 84 1851742 37.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/895/GCA_002912895.1_ASM291289v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_G PRJNA395841 199 SAMN08200444 ASM291289v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.986 Denmark: Aalborg feces Illumina MiSeq University of Bath 50.0x 93.95 99.88 1.11 99.92 0.07 GCF_002912895.1 POZX01 1855 1901 0 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_002912895.1 HMT-575 AAUH-2010376221 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-2010376221 84 1851742 37.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/895/GCA_002912895.1_ASM291289v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_G PRJNA395841 199 SAMN08200444 ASM291289v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.986 Denmark: Aalborg feces Illumina MiSeq University of Bath 50.0x 93.95 99.88 1.11 99.92 0.07 GCF_002912895.1 POZX01 1855 1901 0 4 2 39 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002912995.1 HMT-575 AAUH-12CDti4-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDti4-a 54 1816514 37.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/995/GCA_002912995.1_ASM291299v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200437 ASM291299v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.890 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.75 99.88 0.49 99.97 0.05 GCF_002912995.1 PPAE01 1795 1847 1847 4 2 45 1 Campylobacter_concisus_HMT_433_575 GCA_002912995.1 HMT-575 AAUH-12CDti4-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDti4-a 54 1816514 37.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/912/995/GCA_002912995.1_ASM291299v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200437 ASM291299v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.890 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.75 99.88 0.49 99.97 0.05 GCF_002912995.1 PPAE01 1795 1847 1847 4 2 45 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002913065.1 HMT-575 AAUH-12CDti5-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDti5-a 37 1821668 37.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/065/GCA_002913065.1_ASM291306v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200434 ASM291306v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.850 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.77 99.88 0.37 99.97 0.06 GCF_002913065.1 PPAH01 1801 1855 0 4 4 45 1 Campylobacter_concisus_HMT_433_575 GCA_002913065.1 HMT-575 AAUH-12CDti5-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDti5-a 37 1821668 37.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/065/GCA_002913065.1_ASM291306v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200434 ASM291306v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.850 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.77 99.88 0.37 99.97 0.06 GCF_002913065.1 PPAH01 1801 1855 0 4 4 45 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002913085.1 HMT-575 AAUH-12CDdes2 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDdes2 55 1784251 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/085/GCA_002913085.1_ASM291308v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200431 ASM291308v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.806 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.73 95.56 1.02 92.44 0.15 GCF_002913085.1 PPAK01 1762 1810 1810 4 4 39 1 Campylobacter_concisus_HMT_433_575 GCA_002913085.1 HMT-575 AAUH-12CDdes2 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDdes2 55 1784251 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/085/GCA_002913085.1_ASM291308v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200431 ASM291308v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.806 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.73 95.56 1.02 92.44 0.15 GCF_002913085.1 PPAK01 1762 1810 1810 4 4 39 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002913095.1 HMT-575 AAUH-16UCo-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-16UCo-a 60 1862131 37.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/095/GCA_002913095.1_ASM291309v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJNA395841 199 SAMN08200426 ASM291309v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.736 Denmark: North Jutland saliva Illumina MiSeq University of Bath 50.0x 99.47 96.17 0.93 98.67 0.03 GCF_002913095.1 PPAP01 1876 1927 1927 4 2 44 1 Campylobacter_concisus_HMT_433_575 GCA_002913095.1 HMT-575 AAUH-16UCo-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-16UCo-a 60 1862131 37.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/095/GCA_002913095.1_ASM291309v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJNA395841 199 SAMN08200426 ASM291309v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.736 Denmark: North Jutland saliva Illumina MiSeq University of Bath 50.0x 99.47 96.17 0.93 98.67 0.03 GCF_002913095.1 PPAP01 1876 1927 1927 4 2 44 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002913145.1 HMT-575 AAUH-12CDsig Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDsig 42 1905355 37.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/145/GCA_002913145.1_ASM291314v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200425 ASM291314v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.723 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.74 99.88 1.3 99.98 0.36 GCF_002913145.1 PPAQ01 1910 1963 1963 4 2 46 1 Campylobacter_concisus_HMT_433_575 GCA_002913145.1 HMT-575 AAUH-12CDsig Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDsig 42 1905355 37.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/145/GCA_002913145.1_ASM291314v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200425 ASM291314v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.723 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.74 99.88 1.3 99.98 0.36 GCF_002913145.1 PPAQ01 1910 1963 1963 4 2 46 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002913155.1 HMT-575 AAUH-11UCdes-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-11UCdes-a 62 1744650 37.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/155/GCA_002913155.1_ASM291315v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_M PRJNA395841 199 SAMN08200420 ASM291315v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.656 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.92 89.14 0.56 88.24 0.07 GCF_002913155.1 PPAV01 1731 1776 1776 4 2 38 1 Campylobacter_concisus_HMT_433_575 GCA_002913155.1 HMT-575 AAUH-11UCdes-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-11UCdes-a 62 1744650 37.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/155/GCA_002913155.1_ASM291315v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_M PRJNA395841 199 SAMN08200420 ASM291315v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.656 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.92 89.14 0.56 88.24 0.07 GCF_002913155.1 PPAV01 1731 1776 1776 4 2 38 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002913195.1 HMT-433 AAUH-15UCpp Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-15UCpp 56 1911784 39.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/195/GCA_002913195.1_ASM291319v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200422 ASM291319v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.683 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.35 99.51 0.37 99.97 0.01 GCF_002913195.1 PPAT01 1884 1936 1936 4 2 45 1 Campylobacter_concisus_HMT_433_575 GCA_002913195.1 HMT-433 AAUH-15UCpp Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-15UCpp 56 1911784 39.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/195/GCA_002913195.1_ASM291319v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200422 ASM291319v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.683 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.35 99.51 0.37 99.97 0.01 GCF_002913195.1 PPAT01 1884 1936 1936 4 2 45 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913245.1 HMT-433 AAUH-35UCil2-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-35UCil2-a 53 1931293 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/245/GCA_002913245.1_ASM291324v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200417 ASM291324v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.616 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.48 99.51 0.37 99.97 0.21 GCF_002913245.1 PPAY01 1886 1933 1933 4 2 40 1 Campylobacter_concisus_HMT_433_575 GCA_002913245.1 HMT-433 AAUH-35UCil2-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-35UCil2-a 53 1931293 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/245/GCA_002913245.1_ASM291324v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200417 ASM291324v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.616 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.48 99.51 0.37 99.97 0.21 GCF_002913245.1 PPAY01 1886 1933 1933 4 2 40 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913265.1 HMT-433 AAUH-35UCil3-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-35UCil3-a 45 1927468 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/265/GCA_002913265.1_ASM291326v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200418 ASM291326v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.630 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.49 99.51 0.74 99.96 0.22 GCF_002913265.1 PPAX01 1885 1932 1932 4 2 40 1 Campylobacter_concisus_HMT_433_575 GCA_002913265.1 HMT-433 AAUH-35UCil3-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-35UCil3-a 45 1927468 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/265/GCA_002913265.1_ASM291326v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200418 ASM291326v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.630 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.49 99.51 0.74 99.96 0.22 GCF_002913265.1 PPAX01 1885 1932 1932 4 2 40 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913305.1 HMT-433 AAUH-3UCce2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-3UCce2 57 1935991 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/305/GCA_002913305.1_ASM291330v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200415 ASM291330v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.590 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.22 99.51 0 99.99 0.06 GCF_002913305.1 PPBA01 1904 1951 1951 4 2 40 1 Campylobacter_concisus_HMT_433_575 GCA_002913305.1 HMT-433 AAUH-3UCce2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-3UCce2 57 1935991 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/305/GCA_002913305.1_ASM291330v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200415 ASM291330v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.590 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.22 99.51 0 99.99 0.06 GCF_002913305.1 PPBA01 1904 1951 1951 4 2 40 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913325.1 HMT-433 AAUH-35UCpp Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-35UCpp 47 1938662 39.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/325/GCA_002913325.1_ASM291332v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200414 ASM291332v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.576 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.51 99.51 0.74 99.96 0.21 GCF_002913325.1 PPBB01 1900 1952 1952 4 2 45 1 Campylobacter_concisus_HMT_433_575 GCA_002913325.1 HMT-433 AAUH-35UCpp Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-35UCpp 47 1938662 39.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/325/GCA_002913325.1_ASM291332v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200414 ASM291332v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.576 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.51 99.51 0.74 99.96 0.21 GCF_002913325.1 PPBB01 1900 1952 1952 4 2 45 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913385.1 HMT-433 AAUH-43UCf Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-43UCf 69 1866885 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/385/GCA_002913385.1_ASM291338v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA395841 199 SAMN08200408 ASM291338v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.493 Denmark: North Jutland feces Illumina MiSeq University of Bath 50.0x 88.55 94.32 0.37 96.7 0.02 GCF_002913385.1 PPBH01 1796 1840 1840 4 2 37 1 Campylobacter_concisus_HMT_433_575 GCA_002913385.1 HMT-433 AAUH-43UCf Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-43UCf 69 1866885 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/385/GCA_002913385.1_ASM291338v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA395841 199 SAMN08200408 ASM291338v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.493 Denmark: North Jutland feces Illumina MiSeq University of Bath 50.0x 88.55 94.32 0.37 96.7 0.02 GCF_002913385.1 PPBH01 1796 1840 1840 4 2 37 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913465.1 HMT-433 AAUH-8UCo Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-8UCo 52 1784370 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/465/GCA_002913465.1_ASM291346v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AJ PRJNA395841 199 SAMN08200401 ASM291346v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.400 Denmark: North Jutland saliva Illumina MiSeq University of Bath 50.0x 88.77 87.65 0.43 85.62 0.01 GCF_002913465.1 PPBO01 1748 1790 1790 3 2 36 1 Campylobacter_concisus_HMT_433_575 GCA_002913465.1 HMT-433 AAUH-8UCo Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-8UCo 52 1784370 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/465/GCA_002913465.1_ASM291346v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AJ PRJNA395841 199 SAMN08200401 ASM291346v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.400 Denmark: North Jutland saliva Illumina MiSeq University of Bath 50.0x 88.77 87.65 0.43 85.62 0.01 GCF_002913465.1 PPBO01 1748 1790 1790 3 2 36 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913525.1 HMT-433 AAUH-11UCsig-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-11UCsig-a 46 2003321 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/525/GCA_002913525.1_ASM291352v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA395841 199 SAMN08200399 ASM291352v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.366 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.75 99.51 0 99.97 0.13 GCF_002913525.1 PPBQ01 1985 2031 0 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_002913525.1 HMT-433 AAUH-11UCsig-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-11UCsig-a 46 2003321 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/525/GCA_002913525.1_ASM291352v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA395841 199 SAMN08200399 ASM291352v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.366 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.75 99.51 0 99.97 0.13 GCF_002913525.1 PPBQ01 1985 2031 0 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913545.1 HMT-433 AAUH-9UCpp Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-9UCpp 133 1887759 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/545/GCA_002913545.1_ASM291354v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AV PRJNA395841 199 SAMN08200398 ASM291354v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.353 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.72 89.81 4.18 90.13 2.94 GCF_002913545.1 PPBR01 1845 1891 0 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_002913545.1 HMT-433 AAUH-9UCpp Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-9UCpp 133 1887759 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/545/GCA_002913545.1_ASM291354v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AV PRJNA395841 199 SAMN08200398 ASM291354v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.353 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.72 89.81 4.18 90.13 2.94 GCF_002913545.1 PPBR01 1845 1891 0 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913635.1 HMT-433 AAUH-43UCce-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-43UCce-a 206 2036019 39.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/635/GCA_002913635.1_ASM291363v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA395841 199 SAMN08200391 ASM291363v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.256 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.56 99.51 2.81 99.96 0.03 GCF_002913635.1 PPBY01 1928 1976 0 4 3 40 1 Campylobacter_concisus_HMT_433_575 GCA_002913635.1 HMT-433 AAUH-43UCce-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-43UCce-a 206 2036019 39.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/635/GCA_002913635.1_ASM291363v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA395841 199 SAMN08200391 ASM291363v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.256 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.56 99.51 2.81 99.96 0.03 GCF_002913635.1 PPBY01 1928 1976 0 4 3 40 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913665.1 HMT-433 AAUH-15UCdp-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-15UCdp-a 203 2073774 39.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/665/GCA_002913665.1_ASM291366v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AJ PRJNA395841 199 SAMN08200389 ASM291366v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.230 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.66 97.65 3.32 99.97 1.48 GCF_002913665.1 PPCA01 1990 2039 0 4 2 42 1 Campylobacter_concisus_HMT_433_575 GCA_002913665.1 HMT-433 AAUH-15UCdp-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-15UCdp-a 203 2073774 39.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/665/GCA_002913665.1_ASM291366v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AJ PRJNA395841 199 SAMN08200389 ASM291366v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.230 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.66 97.65 3.32 99.97 1.48 GCF_002913665.1 PPCA01 1990 2039 0 4 2 42 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913715.1 HMT-575 AAUH-12CDti2-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDti2-a 11 1811622 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/715/GCA_002913715.1_ASM291371v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200385 ASM291371v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.133 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.76 99.88 0.37 99.97 0.06 GCF_002913715.1 PPCE01 1793 1849 0 4 4 47 1 Campylobacter_concisus_HMT_433_575 GCA_002913715.1 HMT-575 AAUH-12CDti2-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDti2-a 11 1811622 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/715/GCA_002913715.1_ASM291371v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200385 ASM291371v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.133 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.76 99.88 0.37 99.97 0.06 GCF_002913715.1 PPCE01 1793 1849 0 4 4 47 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002913765.1 HMT-433 AAUH-10UCil-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-10UCil-a 29 2034805 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/765/GCA_002913765.1_ASM291376v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA395841 199 SAMN08200382 ASM291376v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.086 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.64 99.51 0.81 99.99 0.37 GCF_002913765.1 PPCH01 1983 2031 0 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_002913765.1 HMT-433 AAUH-10UCil-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-10UCil-a 29 2034805 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/765/GCA_002913765.1_ASM291376v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA395841 199 SAMN08200382 ASM291376v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.086 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.64 99.51 0.81 99.99 0.37 GCF_002913765.1 PPCH01 1983 2031 0 4 2 41 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913785.1 HMT-433 AAUH-22UCpp-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-22UCpp-a 51 2046564 39.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/785/GCA_002913785.1_ASM291378v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA395841 199 SAMN08200381 ASM291378v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.066 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.63 99.51 0.44 99.98 0.06 GCF_002913785.1 PPCI01 2042 2090 2090 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_002913785.1 HMT-433 AAUH-22UCpp-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-22UCpp-a 51 2046564 39.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/785/GCA_002913785.1_ASM291378v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA395841 199 SAMN08200381 ASM291378v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.066 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.63 99.51 0.44 99.98 0.06 GCF_002913785.1 PPCI01 2042 2090 2090 4 2 41 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002913895.1 HMT-433 AAUH-48UCdp-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-48UCdp-a 212 1928844 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/895/GCA_002913895.1_ASM291389v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200463 ASM291389v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.270 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.69 98.02 0 99.38 0.08 GCF_002913895.1 POZE01 1897 1940 0 4 2 36 1 Campylobacter_concisus_HMT_433_575 GCA_002913895.1 HMT-433 AAUH-48UCdp-a Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-48UCdp-a 212 1928844 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/913/895/GCA_002913895.1_ASM291389v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA395841 199 SAMN08200463 ASM291389v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:06.270 Denmark: Aalborg Biopsy Illumina MiSeq University of Bath 50.0x 88.69 98.02 0 99.38 0.08 GCF_002913895.1 POZE01 1897 1940 0 4 2 36 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002914045.1 HMT-433 AAUH-25Df Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-25Df 57 1819775 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/045/GCA_002914045.1_ASM291404v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AV PRJNA395841 199 SAMN08200435 ASM291404v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.863 Denmark: North Jutland feces Illumina MiSeq University of Bath 50.0x 88.74 99.63 0.43 99.97 0.04 GCF_002914045.1 PPAG01 1804 1855 1855 4 2 44 1 Campylobacter_concisus_HMT_433_575 GCA_002914045.1 HMT-433 AAUH-25Df Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-25Df 57 1819775 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/045/GCA_002914045.1_ASM291404v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AV PRJNA395841 199 SAMN08200435 ASM291404v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.863 Denmark: North Jutland feces Illumina MiSeq University of Bath 50.0x 88.74 99.63 0.43 99.97 0.04 GCF_002914045.1 PPAG01 1804 1855 1855 4 2 44 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002914065.1 HMT-575 AAUH-12CDtra2-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDtra2-a 41 1820583 37.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/065/GCA_002914065.1_ASM291406v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200433 ASM291406v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.833 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.74 99.88 0.37 99.97 0.07 GCF_002914065.1 PPAI01 1801 1853 1853 4 2 45 1 Campylobacter_concisus_HMT_433_575 GCA_002914065.1 HMT-575 AAUH-12CDtra2-a Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDtra2-a 41 1820583 37.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/065/GCA_002914065.1_ASM291406v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200433 ASM291406v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.833 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.74 99.88 0.37 99.97 0.07 GCF_002914065.1 PPAI01 1801 1853 1853 4 2 45 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002914085.1 HMT-433 AAUH-9UCdp Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-9UCdp 54 1766858 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/085/GCA_002914085.1_ASM291408v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AV PRJNA395841 199 SAMN08200432 ASM291408v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.820 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.7 96.91 0 96.97 0 GCF_002914085.1 PPAJ01 1761 1807 0 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_002914085.1 HMT-433 AAUH-9UCdp Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-9UCdp 54 1766858 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/085/GCA_002914085.1_ASM291408v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AV PRJNA395841 199 SAMN08200432 ASM291408v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.820 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.7 96.91 0 96.97 0 GCF_002914085.1 PPAJ01 1761 1807 0 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002914105.1 HMT-575 AAUH-12CDdes4 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDdes4 38 1857163 37.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/105/GCA_002914105.1_ASM291410v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200430 ASM291410v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.793 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.76 99.88 1.11 99.97 0.11 GCF_002914105.1 PPAL01 1837 1893 1893 4 4 47 1 Campylobacter_concisus_HMT_433_575 GCA_002914105.1 HMT-575 AAUH-12CDdes4 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDdes4 38 1857163 37.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/105/GCA_002914105.1_ASM291410v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200430 ASM291410v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.793 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.76 99.88 1.11 99.97 0.11 GCF_002914105.1 PPAL01 1837 1893 1893 4 4 47 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002914115.1 HMT-575 AAUH-12CDce Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDce 44 1870178 37.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/115/GCA_002914115.1_ASM291411v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200429 ASM291411v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.780 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.76 99.88 0.39 99.97 0.14 GCF_002914115.1 PPAM01 1845 1902 1902 4 4 48 1 Campylobacter_concisus_HMT_433_575 GCA_002914115.1 HMT-575 AAUH-12CDce Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDce 44 1870178 37.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/115/GCA_002914115.1_ASM291411v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200429 ASM291411v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.780 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.76 99.88 0.39 99.97 0.14 GCF_002914115.1 PPAM01 1845 1902 1902 4 4 48 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002914145.1 HMT-575 AAUH-16UCf3 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-16UCf3 66 1884438 37.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/145/GCA_002914145.1_ASM291414v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJNA395841 199 SAMN08200428 ASM291414v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.766 Denmark: North Jutland feces Illumina MiSeq University of Bath 50.0x 99.46 99.51 0.37 99.95 0.02 GCF_002914145.1 PPAN01 1903 1953 1953 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_002914145.1 HMT-575 AAUH-16UCf3 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-16UCf3 66 1884438 37.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/145/GCA_002914145.1_ASM291414v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJNA395841 199 SAMN08200428 ASM291414v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.766 Denmark: North Jutland feces Illumina MiSeq University of Bath 50.0x 99.46 99.51 0.37 99.95 0.02 GCF_002914145.1 PPAN01 1903 1953 1953 4 2 43 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002914325.1 HMT-433 AAUH-16UCdp5 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-16UCdp5 58 2045531 39.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/325/GCA_002914325.1_ASM291432v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA395841 199 SAMN08200392 ASM291432v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.270 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.68 99.51 0.19 99.99 0.07 GCF_002914325.1 PPBX01 1995 2046 2046 4 2 44 1 Campylobacter_concisus_HMT_433_575 GCA_002914325.1 HMT-433 AAUH-16UCdp5 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-16UCdp5 58 2045531 39.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/325/GCA_002914325.1_ASM291432v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA395841 199 SAMN08200392 ASM291432v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.270 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 88.68 99.51 0.19 99.99 0.07 GCF_002914325.1 PPBX01 1995 2046 2046 4 2 44 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002914345.1 HMT-433 AAUH-10UCf2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-10UCf2 55 2004369 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/345/GCA_002914345.1_ASM291434v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA395841 199 SAMN08200390 ASM291434v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.243 Denmark: North Jutland feces Illumina MiSeq University of Bath 50.0x 88.63 99.14 0.44 99.97 0.17 GCF_002914345.1 PPBZ01 1953 2005 0 4 2 45 1 Campylobacter_concisus_HMT_433_575 GCA_002914345.1 HMT-433 AAUH-10UCf2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 AAUH-10UCf2 55 2004369 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/345/GCA_002914345.1_ASM291434v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA395841 199 SAMN08200390 ASM291434v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.243 Denmark: North Jutland feces Illumina MiSeq University of Bath 50.0x 88.63 99.14 0.44 99.97 0.17 GCF_002914345.1 PPBZ01 1953 2005 0 4 2 45 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_002914355.1 HMT-575 AAUH-12CDdes3 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDdes3 73 1800093 37.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/355/GCA_002914355.1_ASM291435v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200386 ASM291435v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.150 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.74 99.88 0.74 99.96 0.06 GCF_002914355.1 PPCD01 1779 1819 0 4 2 33 1 Campylobacter_concisus_HMT_433_575 GCA_002914355.1 HMT-575 AAUH-12CDdes3 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 AAUH-12CDdes3 73 1800093 37.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/914/355/GCA_002914355.1_ASM291435v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AG PRJNA395841 199 SAMN08200386 ASM291435v1 Contig SPAdes v. 3.7.0 2017-12-18T18:19:05.150 Denmark: North Jutland Biopsy Illumina MiSeq University of Bath 50.0x 93.74 99.88 0.74 99.96 0.06 GCF_002914355.1 PPCD01 1779 1819 0 4 2 33 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_002916785.1 HMT-209 LR2014-1 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus LR2014-1 87 4557463 66.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/916/785/GCA_002916785.1_ASM291678v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA360566 1933219 SAMN06212360 ASM291678v1 Contig SOAPdenovo v. MAY-2015 2017-01-09T05:24:03.013 China soil Illumina MiSeq Nanjing Agricultural University 123.0x 99.98 0.23 100 0.33 GCF_002916785.1 MTBE01 4303 4406 4406 34 12 56 1 Acidovorax_ebreus_homd_HMT_209 GCA_002925865.1 HMT-755 F6-1 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius F6-1 16 2206463 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/925/865/GCA_002925865.1_ASM292586v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA394657 1304 SAMN07357131 ASM292586v1 Scaffold CLC Genomics Workbench v. 6; CLC Finishing module v. APRIL-2014 2017-07-17T06:38:04.410 France: Vandoeuvre-les-Nancy healthy baby Illumina HiSeq UMR1128 DynAMic 220.0x 96.22 99.9 0.15 100 0.07 GCF_002925865.1 NPDJ01 1980 2098 2098 32 18 67 1 Streptococcus_salivarius_homd_HMT_755 GCA_002933415.1 HMT-024 DSM 15344 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-024 Schlegelella thermodepolymerans DSM 15344 48 3830945 70.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/933/415/GCA_002933415.1_ASM293341v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Caldimonas;s__Caldimonas thermodepolymerans PRJNA430023 215580 SAMN08365198 ASM293341v1 Contig Velvet v. JAN-2018 2018-01-15T08:35:04.573 Germany activated sludge Illumina HiSeq Zhejiang Academy of Agricultural Sciences 750.0x 99.99 99.84 0.47 100 0.02 GCF_002933415.1 PSNY01 3581 3655 3655 16 3 54 1 Schlegelella_thermodepolymerans_homd_HMT_024 GCA_002940975.1 HMT-076 UMB0328 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri UMB0328 15 2575792 32.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/940/975/GCA_002940975.1_ASM294097v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA316969 2029110 SAMN07511430 ASM294097v1 Contig Velvet v. 1.2 2017-08-16T12:32:05.587 USA: Maywood, IL catheter Illumina HiSeq Loyola University Chicago 330.6x 99.67 0 100 0.31 GCF_002940975.1 PNFS01 2501 2625 2625 51 7 65 1 Staphylococcus_warneri_homd_HMT_076 GCA_002943685.1 HMT-612 ATCC 13525 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-612 Pseudomonas fluorescens ATCC 13525 115 6442614 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/943/685/GCA_002943685.1_ASM294368v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E fluorescens PRJNA354433 294 SAMN06049061 ASM294368v1 Scaffold CLC Genomics Workbench v. 9.5.2 2016-11-22T12:24:05.496 United Kingdom:England pre-filter tanks Illumina MiSeq FDA 24.9x 99.98 99.86 0.79 100 0.04 GCF_002943685.1 MUHI01 5890 6046 6046 93 4 58 1 Pseudomonas_fluorescens_homd_HMT_612 GCA_002944995.1 HMT-601 FDAARGOS_153 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis FDAARGOS_153 5 2551965 32.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/944/995/GCA_002944995.1_ASM294499v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA231221 1282 SAMN03996299 ASM294499v1 Complete Genome HGAP3 v. Oct 2014 2015-08-17T07:15:16.000 USA:DC peripheral blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 21.6x 99.61 99.81 0 99.99 0.67 GCF_002944995.1 2300 2461 2461 81 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_002951505.1 HMT-127 C34847 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis C34847 1 2273112 31.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/951/505/GCA_002951505.1_ASM295150v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA313096 1290 SAMN04515345 ASM295150v1 Complete Genome HGAP v. RS_HGAP Assembly.2 2016-02-24T16:11:02.000 Canada: Calgary blood PacBio University of Calgary 166.0x 99.13 99.38 2.56 99.99 1.76 GCF_002951505.1 2172 2314 2314 60 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_002951575.1 HMT-669 M21273 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M21273 1 2203850 51.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/951/575/GCA_002951575.1_ASM295157v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA324131 487 SAMN06144986 ASM295157v1 Complete Genome HGAP v. 3 2016-12-15T11:40:05.010 USA not collected PacBio Centers for Disease Control and Prevention 116.4x 97.32 99.83 0.21 100 0 GCF_002951575.1 2045 2136 2136 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_002951835.1 HMT-683 ATCC 29453 Named Cultivated Oral (Abundance: High) HMT-683 Simonsiella muelleri ATCC 29453 1 2469862 41.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/951/835/GCA_002951835.1_ASM295183v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Simonsiella;s__Simonsiella muelleri PRJNA361301 641147 SAMN06230011 ASM295183v1 Complete Genome SMRT Analysis 2.0.1 v. HGAP 2017-01-13T15:20:02.677 missing oral cavities PacBio INRS-Institut Armand Frappier 300.0x 99.98 97.69 0.53 100 0.06 GCF_002951835.1 2385 2476 2476 17 15 58 1 Simonsiella_muelleri_homd_HMT_683 GCA_002952055.1 HMT-041 HOT041/ORNL Named Cultivated Oral (Abundance: Scarce) HMT-041 Desulfobulbus oralis HOT041/ORNL 1 2774417 59.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/952/055/GCA_002952055.1_ASM295205v1 d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__Desulfobulbus;s__Desulfobulbus oralis PRJNA385722 1986146 SAMN06909033 ASM295205v1 Complete Genome RS_HGAP Assembly v. 2 2017-05-07T13:24:03.020 USA: Columbus Ohio oral subgingival PacBio Oak Ridge National Laboratory 700.0x 98.81 0 99.99 0.01 GCF_002952055.1 2436 2504 2504 10 6 51 1 Desulfobulbus_oralis_homd_HMT_041 GCA_002952715.2 HMT-120 SGAir0252 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SGAir0252 2 2674594 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/952/715/GCA_002952715.2_ASM295271v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA388547 1283 SAMN08103045 ASM295271v2 Complete Genome HGAP v. 3 2017-11-28T02:42:03.950 Singapore air PacBio Nanyang Technological University 71.3x 99.41 99.81 1.11 100 0.8 GCF_002952715.2 2590 2776 2776 104 19 62 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_002954055.1 HMT-601 FDAARGOS_161 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis FDAARGOS_161 3 2515734 32.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/954/055/GCA_002954055.1_ASM295405v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA231221 1282 SAMN03996306 ASM295405v1 Complete Genome HGAP3 v. Oct 2014 2015-08-17T07:15:17.000 USA:DC peripheral blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 18.7x 99.41 99.81 0.1 99.99 0.27 GCF_002954055.1 2276 2440 2440 84 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_002954105.1 HMT-127 FDAARGOS_136 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis FDAARGOS_136 7 2268051 31.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/954/105/GCA_002954105.1_ASM295410v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA231221 1290 SAMN03996281 ASM295410v1 Chromosome HGAP3 v. Nov 2014 2015-08-17T07:15:15.000 USA:DC peripheral blood PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 22.3x 99.19 99.38 0.85 99.99 0.11 GCF_002954105.1 2177 2324 2324 64 19 63 1 Staphylococcus_hominis_homd_HMT_127 GCA_002959715.1 HMT-967 ATCC 43185 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-967 Bacteroides caccae ATCC 43185 3 4577788 41.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/959/715/GCA_002959715.1_ASM295971v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae PRJNA343143 47678 SAMN08570051 ASM295971v1 Contig HGAP v. v. 3 2018-02-20T18:03:05.016 missing not applicable PacBio Mount Sinai School of Medicine 53.0x 99.99 99.3 0.08 99.95 0.53 GCF_002959715.1 PUEQ01 3674 3762 3762 13 0 74 1 Bacteroides_caccae_homd_HMT_967 GCA_002959775.1 HMT-158 JCM 15642 Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae JCM 15642 15 2187106 38.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/959/775/GCA_002959775.1_ASM295977v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJDB3830 1298595 SAMD00090159 ASM295977v1 Contig MyPro v. 2015-01-01T00:00:00 2018-01-13T01:00:38.910 not applicable Illumina NextSeq Health Sciences University of Hokkaido 100.0x 99.67 100 0 99.96 0.14 GCF_002959775.1 PPCX01 1982 2064 2064 21 12 48 1 Veillonella_rogosae_homd_HMT_158 GCA_002959795.1 HMT-161 S13054-11 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula S13054-11 10 2086734 38.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/959/795/GCA_002959795.1_ASM295979v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJDB3830 2027458 SAMD00090158 ASM295979v1 Contig MyPro v. 2015-01-01T00:00:00 2018-01-13T01:00:38.893 Japan:Hokkaido, Tobetsu-cho Illumina NextSeq Health Sciences University of Hokkaido 100.0x 100 0 99.99 0.18 GCF_002959795.1 PPCY01 1838 1919 1919 21 11 48 1 Veillonella_parvula_homd_HMT_161 GCA_002959815.1 HMT-524 T34266-5 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica T34266-5 26 2060569 39.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/959/815/GCA_002959815.1_ASM295981v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJDB3830 2027457 SAMD00090157 ASM295981v1 Contig MyPro v. 2015-01-01T00:00:00 2018-01-13T01:00:38.877 Japan:Hokkaido, Tobetsu-cho Illumina NextSeq Health Sciences University of Hokkaido 100.0x 100 0.6 99.99 0.45 GCF_002959815.1 PPCZ01 1845 1928 1928 18 14 50 1 Veillonella_atypica_homd_HMT_524 GCA_002959835.1 HMT-158 S13053-19 Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae S13053-19 17 2278086 38.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/959/835/GCA_002959835.1_ASM295983v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJDB3830 2027456 SAMD00090156 ASM295983v1 Contig MyPro v. 2015-01-01T00:00:00 2018-01-13T01:00:38.857 Japan:Hokkaido, Tobetsu-cho Illumina NextSeq Health Sciences University of Hokkaido 100.0x 100 0.6 100 0.21 GCF_002959835.1 PPDA01 2057 2135 2135 22 9 46 1 Veillonella_rogosae_homd_HMT_158 GCA_002959855.1 HMT-887 JCM 15641 Named Cultivated Oral (Abundance: Scarce) HMT-887 Veillonella denticariosi JCM 15641 8 1981866 42.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/959/855/GCA_002959855.1_ASM295985v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella denticariosi PRJDB3830 1298594 SAMD00090155 ASM295985v1 Contig MyPro v. 2015-01-01T00:00:00 2018-01-13T01:00:38.837 not applicable Illumina NextSeq Health Sciences University of Hokkaido 100.0x 99.54 100 0 99.99 0.18 GCF_002959855.1 PPDB01 1800 1876 1876 18 7 50 1 Veillonella_denticariosi_homd_HMT_887 GCA_002959915.1 HMT-524 ATCC 17744 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica ATCC 17744 11 2037410 39.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/959/915/GCA_002959915.1_ASM295991v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJDB3830 1128111 SAMD00090152 ASM295991v1 Contig MyPro v. 2015-01-01T00:00:00 2018-01-13T01:00:36.567 not applicable Illumina NextSeq Health Sciences University of Hokkaido 100.0x 99.99 100 0 99.99 0.28 GCF_002959915.1 PPDE01 1873 1951 1951 19 8 50 1 Veillonella_atypica_homd_HMT_524 GCA_002959935.1 HMT-421 Y6 Named Cultivated Oral (Abundance: Medium) HMT-421 Veillonella tobetsuensis Y6 14 2041114 38.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/959/935/GCA_002959935.1_ASM295993v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella tobetsuensis PRJDB3830 1110546 SAMD00090161 ASM295993v1 Contig MyPro v. 2015-01-01T00:00:00 2018-01-13T01:00:38.947 Japan:Hokkaido, Tobetsu-cho Illumina NextSeq Health Sciences University of Hokkaido 100.0x 97.62 100 0.6 100 0.13 GCF_002959935.1 PPDF01 1849 1925 1925 19 8 48 1 Veillonella_tobetsuensis_homd_HMT_421 GCA_002966575.1 HMT-641 48P106H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 48P106H1 1 1857175 38.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/966/575/GCA_002966575.1_ASM296657v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJNA358390 727 SAMN06203601 ASM296657v1 Complete Genome HGAP v. 3.0 2017-01-04T14:27:18.823 USA: Buffalo, NY sputum PacBio RS II; Illumina HiSeq 2000 Institute for Genome Sciences, University of Maryland, Baltimore 62.2x 97.19 99.77 0 100 0.02 GCF_002966575.1 1720 1829 1829 32 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_002966595.1 HMT-641 48P153H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 48P153H1 1 1857048 38.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/966/595/GCA_002966595.1_ASM296659v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJNA358390 727 SAMN06203603 ASM296659v1 Complete Genome HGAP v. 3.0 2017-01-04T14:27:18.923 USA: Buffalo, NY sputum PacBio RS II; Illumina HiSeq 2000 Institute for Genome Sciences, University of Maryland, Baltimore 57.8x 97.18 99.77 0 100 0.02 GCF_002966595.1 1722 1831 1831 32 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_002966615.1 HMT-641 5P28H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 5P28H1 1 1886450 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/966/615/GCA_002966615.1_ASM296661v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA358390 727 SAMN06203638 ASM296661v1 Complete Genome HGAP v. 3.0 2017-01-04T14:27:20.560 USA: Buffalo, NY sputum PacBio RS II; Illumina HiSeq 2000 Institute for Genome Sciences, University of Maryland, Baltimore 59.5x 97.91 99.77 0 100 0.01 GCF_002966615.1 1779 1892 1892 35 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_002966635.1 HMT-641 5P54H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 5P54H1 1 1886411 38.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/966/635/GCA_002966635.1_ASM296663v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA358390 727 SAMN06203639 ASM296663v1 Complete Genome HGAP v. 3.0 2017-01-04T14:27:20.603 USA: Buffalo, NY sputum PacBio RS II; Illumina HiSeq 2000 Institute for Genome Sciences, University of Maryland, Baltimore 51.5x 97.91 99.77 0 100 0.01 GCF_002966635.1 1783 1896 1896 35 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_002966655.1 HMT-641 67P38H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 67P38H1 1 1823096 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/966/655/GCA_002966655.1_ASM296665v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA358390 727 SAMN06203648 ASM296665v1 Complete Genome HGAP v. 3.0 2017-01-04T14:27:21.040 USA: Buffalo, NY sputum PacBio RS II; Illumina HiSeq 2000 Institute for Genome Sciences, University of Maryland, Baltimore 48.9x 97.12 99.77 0.23 100 0.03 GCF_002966655.1 1687 1796 1796 32 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_002966675.1 HMT-641 67P56H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 67P56H1 1 1823172 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/966/675/GCA_002966675.1_ASM296667v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA358390 727 SAMN06203650 ASM296667v1 Complete Genome HGAP v. 3.0 2017-01-04T14:27:21.136 USA: Buffalo, NY sputum PacBio RS II; Illumina HiSeq 2000 Institute for Genome Sciences, University of Maryland, Baltimore 49.6x 97.12 99.77 0.23 100 0.02 GCF_002966675.1 1688 1797 1797 32 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_002966695.1 HMT-641 6P24H2 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 6P24H2 1 1901558 38.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/966/695/GCA_002966695.1_ASM296669v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA358390 727 SAMN06203655 ASM296669v1 Complete Genome HGAP v. 3.0 2017-01-04T14:27:21.406 USA: Buffalo, NY sputum PacBio RS II; Illumina HiSeq 2000 Institute for Genome Sciences, University of Maryland, Baltimore 213.7x 97.18 99.77 0 100 0.03 GCF_002966695.1 1784 1894 1894 33 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_002966715.1 HMT-641 6P32H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 6P32H1 1 1901533 38.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/966/715/GCA_002966715.1_ASM296671v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA358390 727 SAMN06203656 ASM296671v1 Complete Genome HGAP v. 3.0 2017-01-04T14:27:21.456 USA: Buffalo, NY sputum PacBio RS II; Illumina HiSeq 2000 Institute for Genome Sciences, University of Maryland, Baltimore 56.4x 97.17 99.77 0 100 0.03 GCF_002966715.1 1784 1894 1894 33 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_002966735.1 HMT-641 11P6H Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 11P6H 1 1813865 38.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/966/735/GCA_002966735.1_ASM296673v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA358390 727 SAMN06203483 ASM296673v1 Complete Genome HGAP v. 3.0 2017-01-04T14:27:13.920 USA: Buffalo, NY sputum PacBio RS II; Illumina HiSeq 2000 Institute for Genome Sciences, University of Maryland, Baltimore 61.5x 97.21 99.77 0 100 0.01 GCF_002966735.1 1669 1779 1779 32 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_002984125.1 HMT-833 FDAARGOS_304 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis FDAARGOS_304 1 1941980 41.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/984/125/GCA_002984125.1_ASM298412v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA231221 480 SAMN06173317 ASM298412v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3.0 2016-12-21T16:19:29.643 USA:VA nose of a healthy pediatric carrier in the Netherlands PacBio; Illumina University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center 16.7x 99.18 99.73 0.27 100 0.02 GCF_002984125.1 1754 1828 1828 11 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_002988215.2 HMT-641 93P28H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 93P28H1 1 1812418 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/988/215/GCA_002988215.2_ASM298821v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA358390 727 SAMN06203705 ASM298821v2 Complete Genome canu v. 1.8 2017-01-04T14:27:23.683 USA: Buffalo, NY sputum PacBio Sequel II 2.0 Institute for Genome Sciences, University of Maryland, Baltimore 99000.0x 97.23 99.77 0.23 100 0 GCF_002988215.2 1674 1782 1782 30 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_002988885.2 HMT-641 93P10H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 93P10H1 1 1812134 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/988/885/GCA_002988885.2_ASM298888v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA358390 727 SAMN06203703 ASM298888v2 Complete Genome canu v. 1.8 2017-01-04T14:27:23.583 USA: Buffalo, NY sputum PacBio Sequel II 2.0 Institute for Genome Sciences, University of Maryland, Baltimore 5800.0x 97.24 99.77 0.23 100 0 GCF_002988885.2 1669 1777 1777 30 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_002993105.1 HMT-010 DSSKY-A-001 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-010 Acinetobacter radioresistens DSSKY-A-001 1 3132860 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/993/105/GCA_002993105.1_ASM299310v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens PRJNA436456 40216 SAMN08625641 ASM299310v1 Complete Genome other v. October -2016 2018-03-01T04:19:03.036 China:Beijing soil PacBio Northeast Normal University 312.0x 99.43 99.59 0 99.99 0.06 GCF_002993105.1 2857 2970 2970 15 21 76 1 Acinetobacter_radioresistens_homd_HMT_010 GCA_002995555.1 HMT-686 LAR01 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans LAR01 1 2088369 36.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/995/555/GCA_002995555.1_ASM299555v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA407965 1309 SAMN07671786 ASM299555v1 Complete Genome celera v. 9/01/15 2017-09-19T15:20:06.403 USA: Rochester, NY saliva from healthy adult PacBio University of Florida 99.2 100 0 100 0.17 GCF_002995555.1 1956 2103 2103 66 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_002998295.1 HMT-935 CCUG 47711 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-935 Fastidiosipila sanguinis CCUG 47711 1 1785891 33.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/998/295/GCA_002998295.1_ASM299829v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Saccharofermentanales;f__Fastidiosipilaceae;g__Fastidiosipila;s__Fastidiosipila sanguinis PRJNA282954 236753 SAMN08567288 ASM299829v1 Complete Genome Canu v. 1.6 / Arrow v. 2.2.1 2018-02-20T09:48:04.960 Sweden: Karlstad PacBio Sequel The Forsyth Institute 25.4x 82.62 0.71 97.84 0.18 GCF_002998295.1 1505 1576 1576 22 6 42 1 Fastidiosipila_sanguinis_homd_HMT_935 GCA_002998355.1 HMT-998 CCUG 44730 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-998 Victivallis lenta CCUG 44730 1 5242681 59.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/998/355/GCA_002998355.1_ASM299835v1 d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__Victivallales;f__Victivallaceae;g__Victivallis;s__Victivallis lenta PRJNA282954 2094242 SAMN08567287 ASM299835v1 Complete Genome Canu v. 1.6 / Arrow v. 2.2.1 2018-02-20T09:48:04.940 Sweden: Karlstad PacBio Sequel The Forsyth Institute 120.4x 94.59 2.03 99.51 0.31 GCF_002998355.1 4202 4280 4280 5 12 60 1 GCA_002998435.1 HMT-465 ATCC 33285 Named Cultivated Oral (Abundance: Scarce) HMT-465 Bacteroides zoogleoformans ATCC 33285 1 3361794 47.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/998/435/GCA_002998435.1_ASM299843v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides zoogleoformans PRJNA282954 28119 SAMN08472433 ASM299843v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2018-02-06T15:58:04.300 USA: Blacksberg, VA PacBio The Forsyth Institute 220.0x 99.99 98.33 0.37 99.99 0.25 GCF_002998435.1 2786 2872 2872 11 12 61 2 Bacteroides_zoogleoformans_homd_HMT_465 GCA_002998535.1 HMT-630 F0111 Named Cultivated Oral (Abundance: Scarce) HMT-630 Bacteroides heparinolyticus F0111 1 3608975 47.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/998/535/GCA_002998535.1_ASM299853v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides heparinolyticus PRJNA282954 28113 SAMN08439035 ASM299853v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2018-01-30T17:19:05.126 USA: Blacksberg, VA 14 mesial subgingival PacBio The Forsyth Institute 230.0x 98.6 98.33 0 99.99 0.54 GCF_002998535.1 2873 2991 2991 41 12 64 1 Bacteroides_heparinolyticus_homd_HMT_630 GCA_002998595.1 HMT-036 F0629 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 F0629 1 1805716 38.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/998/595/GCA_002998595.1_ASM299859v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA282954 712310 SAMN08439034 ASM299859v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2018-01-30T17:19:05.106 USA: Boston, MA PacBio The Forsyth Institute 98.0x 99.61 0 100 0.08 GCF_002998595.1 1637 1741 1741 27 19 57 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_002998695.1 HMT-929 W2294 Unnamed Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-929 Peptoniphilaceae [G3] bacterium HMT-929 W2294 1 1646831 34.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/998/695/GCA_002998695.1_ASM299869v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria;s__Fenollaria massiliensis PRJNA282954 2081703 SAMN08439029 ASM299869v1 Complete Genome Canu v. 1.6 + quiver 2018-01-30T17:19:05.003 United Kingdom: Cardiff PacBio The Forsyth Institute 167.0x 97.55 0 99.77 0.18 GCF_002998695.1 1505 1591 1591 25 12 48 1 Fenollaria_massiliensis_homd_HMT_929 GCA_002998835.1 HMT-700 F0512 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea F0512 2 2682541 39.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/998/835/GCA_002998835.1_ASM299883v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA282954 1316593 SAMN08439036 ASM299883v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2018-01-30T17:19:05.146 USA: Cambridge, MA coronal/gingival PacBio The Forsyth Institute 119.0x 100 0 99.96 0.09 GCF_002998835.1 2258 2326 2326 8 12 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_002998925.1 HMT-593 CCUG 47132 Named Cultivated Oral (Abundance: Medium) HMT-593 Mogibacterium diversum CCUG 47132 1 1815831 40.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/998/925/GCA_002998925.1_ASM299892v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium diversum PRJNA282954 114527 SAMN08567286 ASM299892v1 Complete Genome Canu v. 1.6 / Arrow v. 2.2.1 2018-02-20T09:48:04.906 Japan: Saitama tongue plaque PacBio Sequel The Forsyth Institute 44.9x 99.29 0 99.59 0.24 GCF_002998925.1 1697 1760 1760 12 6 44 1 Mogibacterium_diversum_homd_HMT_593 GCA_002999035.1 HMT-500 W11650 Unnamed Cultivated Oral (Abundance: Scarce) HMT-500 Lachnospiraceae [G8] bacterium HMT-500 W11650 1 3201383 45.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/999/035/GCA_002999035.1_ASM299903v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Vallitaleaceae;g__W11650;s__W11650 sp002999035 PRJNA282954 712991 SAMN08439028 ASM299903v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2018-01-30T17:19:04.980 United Kingdom: London Periodontal pocket PacBio The Forsyth Institute 107.0x 90.49 2.57 99.98 0.42 GCF_002999035.1 2808 2908 2908 45 9 45 1 GCA_002999135.1 HMT-878 F0545 Unnamed Cultivated Oral (Abundance: Scarce) HMT-878 Capnocytophaga sp. HMT-878 F0545 2 2990835 37.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/999/135/GCA_002999135.1_ASM299913v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sp002999135 PRJNA282954 1316596 SAMN08472925 ASM299913v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2018-02-06T17:11:05.560 USA: Cambridge, MA coronal/gingival PacBio The Forsyth Institute 307.0x 100 0 99.97 0.59 GCF_002999135.1 2674 2739 2739 4 12 48 1 GCA_002999155.1 HMT-368 W5195 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea W5195 3 3679573 70.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/999/155/GCA_002999155.1_ASM299915v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA282954 712270 SAMN08439030 ASM299915v1 Complete Genome canu v. 1.6 / quiver 2018-01-30T17:19:05.023 United Kingdom: London Tooth root canal PacBio The Forsyth Institute 140.0x 99.41 0.59 100 0.18 GCF_002999155.1 3446 3537 3537 22 12 56 1 Dietzia_cinnamea_homd_HMT_368 GCA_002999235.1 HMT-897 F0631 Unnamed Cultivated Oral (Abundance: Low) HMT-897 Actinomyces sp. HMT-897 F0631 2 3249416 71.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/999/235/GCA_002999235.1_ASM299923v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp002999235 PRJNA282954 2081702 SAMN08439033 ASM299923v1 Complete Genome SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2018-01-30T17:19:05.086 USA: Boston, MA Supragingival dental plaque PacBio The Forsyth Institute 110.0x 99.29 0.71 100 0.55 GCF_002999235.1 2468 2540 2540 11 6 54 1 Actinomyces_sp_HMT_897_homd_HMT_897 GCA_002999475.1 HMT-543 11 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus 11 24 1850270 38.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/999/475/GCA_002999475.1_ASM299947v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA436026 1328 SAMN08611361 ASM299947v1 Scaffold CLC Genomics Workbench v. 9 2018-02-26T17:33:03.843 United Kingdom: Newcastle Univ pus from dental abscess Illumina HiSeq Oregon Health and Science University 5785.0x 95.33 99.88 0.07 99.98 0.08 GCF_002999475.1 PVST01 1807 1895 1895 45 4 38 1 Streptococcus_anginosus_homd_HMT_543 GCA_002999555.1 HMT-543 OUP21 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus OUP21 26 1997328 38.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/999/555/GCA_002999555.1_ASM299955v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA436026 1328 SAMN08611358 ASM299955v1 Contig CLC Genomics Workbench v. 9 2018-02-26T17:33:03.800 USA: University of Oklahoma He blood Illumina HiSeq Oregon Health and Science University 4741.0x 95.4 99.88 0 99.99 0.14 GCF_002999555.1 PVSZ01 1916 1996 1996 43 3 33 1 Streptococcus_anginosus_homd_HMT_543 GCA_002999595.1 HMT-543 OUP10 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus OUP10 12 1863386 38.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/999/595/GCA_002999595.1_ASM299959v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA436026 1328 SAMN08611355 ASM299959v1 Scaffold CLC Genomics Workbench v. 9 2018-02-26T17:33:03.743 USA: University of Oklahoma He blood Illumina HiSeq Oregon Health and Science University 4228.0x 95.58 100 0 99.99 0.11 GCF_002999595.1 PVTC01 1833 1909 1909 35 3 37 1 Streptococcus_anginosus_homd_HMT_543 GCA_003019295.1 HMT-698 ATCC 25586 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto ATCC 25586 1 2180101 27.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/019/295/GCA_003019295.1_ASM301929v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA433545 190304 SAMN08706662 ASM301929v1 Complete Genome Unicycler v. 0.4.3 2018-03-13T14:18:03.926 Not determined Oral cavity Illumina, MinION Virginia Tech 60.0x 99.99 100 0 100 0.09 GCF_003019295.1 2013 2094 2094 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_003019695.1 HMT-860 ATCC 25563 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-860 Fusobacterium gonidiaformans ATCC 25563 1 1678881 32.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/019/695/GCA_003019695.1_ASM301969v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C gonidiaformans PRJNA433545 469615 SAMN08501140 ASM301969v1 Complete Genome Unicycler v. 0.4.3 2018-02-08T15:52:03.033 Not determined Tonsil Illumina, MinION Virginia Tech 62.0x 99.99 100 0 99.98 0.11 GCF_003019695.1 1610 1686 1686 13 12 50 1 Fusobacterium_gonidiaformans_homd_HMT_860 GCA_003019715.1 HMT-690 1_1_36S Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum 1_1_36S 1 2286018 34.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/019/715/GCA_003019715.1_ASM301971v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA433545 143387 SAMN08501105 ASM301971v1 Complete Genome Unicycler v. 0.4.3 2018-02-08T15:47:03.073 Not determined Terminal ileum Illumina, MinION Virginia Tech 56.0x 98.93 100 0 100 0.25 GCF_003019715.1 2119 2205 2205 18 17 50 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_003019755.1 HMT-201 2_1_31 Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum 2_1_31 1 2541084 28.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/019/755/GCA_003019755.1_ASM301975v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium periodonticum_D PRJNA433545 860 SAMN08501101 ASM301975v1 Complete Genome Unicycler v. 0.4.3 2018-02-08T15:42:05.933 Not determined Colon Illumina, MinION Virginia Tech 70.0x 92.96 100 0.56 100 0.01 GCF_003019755.1 2379 2461 2461 21 15 45 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_003019785.1 HMT-698 ATCC 23726 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto ATCC 23726 1 2299539 27.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/019/785/GCA_003019785.1_ASM301978v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA433545 525283 SAMN08501025 ASM301978v1 Complete Genome Unicycler v. 0.4.3 2018-02-08T15:18:03.177 Not determined Urogentical Tract Illumina, MinION Virginia Tech 35.0x 98.68 100 0.16 99.99 0.16 GCF_003019785.1 2106 2188 2188 19 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_003028315.1 HMT-682 ATCC 19696 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa ATCC 19696 1 2688408 51.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/028/315/GCA_003028315.1_ASM302831v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa PRJNA445206 488 SAMN08770273 ASM302831v1 Complete Genome PacBio SMART Analysis v. v2.3 2018-03-22T02:52:02.830 missing missing PacBio Korea University 340.0x 99.92 0.23 100 0.14 GCF_003028315.1 2455 2545 2545 16 12 61 1 Neisseria_mucosa_homd_HMT_682 GCA_003030305.1 HMT-530 ATCC 6919 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes ATCC 6919 1 2495001 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/030/305/GCA_003030305.1_ASM303030v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA408272 1747 SAMN07660999 ASM303030v1 Complete Genome HGAP v. 3 2017-09-17T13:11:02.830 China: Guangzhou Illumina; PacBio Jinan University Medical School Affiliated Hospital of Dongguan 100.0x 99.99 99.43 0.03 100 0.11 GCF_003030305.1 2308 2388 2388 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_003031285.1 HMT-550 TF3198 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus TF3198 2 2804030 32.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/031/285/GCA_003031285.1_ASM303128v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA411362 1280 SAMN07684573 ASM303128v1 Complete Genome Phrap v. 1.080730 2017-09-22T00:05:02.583 Japan ABI3730 The University of Tokyo 8.6x 99.94 99.51 0.08 100 0.1 GCF_003031285.1 2571 2766 2766 113 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_003033925.1 HMT-286 W11666 Named Cultivated Oral (Abundance: Medium) HMT-286 Tannerella serpentiformis W11666 1 3013600 56.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/033/925/GCA_003033925.1_ASM303392v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella serpentiformis PRJNA282954 712710 SAMN08743846 ASM303392v1 Chromosome canu v. 1.6 / quiver 2018-03-20T14:51:11.746 United Kingdom: London subgingival dental plaque PacBio The Forsyth Institute 223.0x 99.45 0.19 99.84 0.09 GCF_003033925.1 2534 2609 2609 22 6 46 1 Tannerella_serpentiformis_homd_HMT_286 GCA_003033945.1 HMT-921 W10507 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-921 Paenibacillus glucanolyticus W10507 1 6573405 48.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/033/945/GCA_003033945.1_ASM303394v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus glucanolyticus PRJNA282954 59843 SAMN08743844 ASM303394v1 Chromosome canu v. 1.6 / quiver 2018-03-20T14:51:11.696 United Kingdom: London Subgingival plaque, gingival sulcus PacBio The Forsyth Institute 94.0x 99.99 99.71 1.19 100 0.65 GCF_003033945.1 6004 6105 0 0 24 76 1 Paenibacillus_glucanolyticus_homd_HMT_921 GCA_003040695.1 HMT-331 SNUC 3034 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis SNUC 3034 108 2283589 37.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/040/695/GCA_003040695.1_ASM304069v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJNA342349 29379 SAMN06172841 ASM304069v1 Contig SPAdes v. 3.8.0 2016-12-21T14:03:53.660 Canada: Ontario Herd 211 Illumina MiSeq University of Calgary 56.0x 95.72 99.45 0 99.95 0.04 GCF_003040695.1 PZDH01 2129 2234 2234 37 9 58 1 Staphylococcus_auricularis_homd_HMT_331 GCA_003040715.1 HMT-331 SNUC 993 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis SNUC 993 141 2297511 37.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/040/715/GCA_003040715.1_ASM304071v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJNA342349 29379 SAMN06172840 ASM304071v1 Contig SPAdes v. 3.8.0 2016-12-21T14:03:52.896 Canada: Alberta Herd 117 Illumina MiSeq University of Calgary 42.0x 95.71 99.45 1.1 99.99 0.05 GCF_003040715.1 PZDI01 2151 2256 2256 39 7 58 1 Staphylococcus_auricularis_homd_HMT_331 GCA_003041075.1 HMT-116 SNUC 791 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis SNUC 791 40 2415582 32.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/041/075/GCA_003041075.1_ASM304107v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA342349 29388 SAMN06172842 ASM304107v1 Contig SPAdes v. 3.8.0 2016-12-21T14:03:54.253 Canada: Ontario Herd 201 Illumina MiSeq University of Calgary 51.0x 98.83 99.81 0.08 100 0.03 GCF_003041075.1 PZDG01 2274 2394 2394 47 10 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_003043925.1 HMT-820 W6195 Named Cultivated Oral (Abundance: Scarce) HMT-820 Prevotella illustrans W6195 2 3198654 47.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/043/925/GCA_003043925.1_ASM304392v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella illustrans PRJNA282954 2081962 SAMN08439031 ASM304392v1 Contig SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2018-01-30T17:19:05.046 United Kingdom: London Periodontal pocket PacBio The Forsyth Institute 194.0x 99.32 0.51 99.16 0.25 GCF_003043925.1 PYXD01 2604 2682 2682 5 15 57 1 Prevotella_illustrans_homd_HMT_820 GCA_003043935.1 HMT-313 F0648 Named Cultivated Oral (Abundance: High) HMT-313 Prevotella jejuni F0648 3 3915696 41.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/043/935/GCA_003043935.1_ASM304393v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella jejuni PRJNA282954 652722 SAMN04435865 ASM304393v1 Scaffold SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2016-01-22T19:16:05.000 USA: Cambridge, MA attached gingivae PacBio The Forsyth Institute 190.0x 99.32 0 100 0.66 GCF_003043935.1 PYXE01 3131 3203 3203 9 12 50 1 Prevotella_jejuni_homd_HMT_313 GCA_003043945.1 HMT-376 F0043 Unnamed Cultivated Oral (Abundance: Scarce) HMT-376 Hallella sp. HMT-376 F0043 3 3017058 49.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/043/945/GCA_003043945.1_ASM304394v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp003043945 PRJNA282954 712466 SAMN08743843 ASM304394v1 Contig SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094 2018-03-20T14:51:11.670 USA: Blacksberg, VA 3 mesial subgingival PacBio The Forsyth Institute 101.0x 98.13 0.79 99.64 0.23 GCF_003043945.1 PYXG01 2699 2780 2780 12 13 55 1 Hallella_sp_HMT_376_homd_HMT_376 GCA_003043955.1 HMT-096 F0428 Unnamed Cultivated Oral (Abundance: Medium) HMT-096 Lachnospiraceae [G2] bacterium HMT-096 F0428 2 2232415 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/043/955/GCA_003043955.1_ASM304395v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__F0428;s__F0428 sp003043955 PRJNA282954 712982 SAMN08743845 ASM304395v1 Contig canu v. 1.6 2018-03-20T14:51:11.720 USA: Boston, MA Supragingival dental plaque, molar tooth PacBio The Forsyth Institute 46.0x 96.52 2.32 98.61 1.02 GCF_003043955.1 PYXF01 2093 2182 2182 23 14 51 1 Lachnospiraceae__G2__bacterium_HMT_096_homd_HMT_096 GCA_003044345.1 HMT-609 C2006001571 Named Cultivated Oral (Abundance: Medium) HMT-609 Neisseria flava C2006001571 123 2587278 51.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/345/GCA_003044345.1_ASM304434v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flava PRJNA428750 490 SAMN08299199 ASM304434v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.340 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 27.5x 95.01 99.7 0.23 100 0 GCF_003044345.1 PQVC01 2353 2425 2425 16 3 52 1 Neisseria_flava_homd_HMT_609 GCA_003044355.1 HMT-101 C2005001510 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava C2005001510 42 2355736 49.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/355/GCA_003044355.1_ASM304435v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA428750 28449 SAMN08299198 ASM304435v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.326 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 29.2x 94.8 99.92 0.11 100 0.01 GCF_003044355.1 POWU01 2292 2370 2370 20 3 54 1 Neisseria_perflava_homd_HMT_101 GCA_003044385.1 HMT-476 C2007002879 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava C2007002879 38 2286423 49.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/385/GCA_003044385.1_ASM304438v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA428750 28449 SAMN08299200 ASM304438v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.356 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 35.7x 95.07 99.92 0.23 100 0.4 GCF_003044385.1 POWV01 2169 2259 2259 30 5 54 1 Neisseria_subflava_homd_HMT_476 GCA_003044395.1 HMT-682 C2004002444 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa C2004002444 134 2600550 50.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/395/GCA_003044395.1_ASM304439v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA428750 488 SAMN08299197 ASM304439v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.306 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 17.4x 99.92 0 100 0.07 GCF_003044395.1 POWT01 2359 2479 2479 59 3 57 1 Neisseria_mucosa_homd_HMT_682 GCA_003044425.1 HMT-764 C2007003584 Named Cultivated Oral (Abundance: High) HMT-764 Neisseria sicca C2007003584 24 2443310 51.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/425/GCA_003044425.1_ASM304442v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sicca_C PRJNA428750 490 SAMN08299201 ASM304442v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.370 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 35.5x 95.67 99.87 0 100 0 GCF_003044425.1 POWW01 2265 2372 2372 50 3 53 1 Neisseria_sicca_homd_HMT_764 GCA_003044445.1 HMT-682 C2008000159 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa C2008000159 56 2464790 51.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/445/GCA_003044445.1_ASM304444v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA428750 488 SAMN08299202 ASM304444v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.386 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 31.0x 99.87 0.11 100 0 GCF_003044445.1 POWX01 2207 2279 2279 16 3 52 1 Neisseria_mucosa_homd_HMT_682 GCA_003044505.1 HMT-476 C2008001664 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava C2008001664 34 2262420 49.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/505/GCA_003044505.1_ASM304450v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA428750 28449 SAMN08299206 ASM304450v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.443 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 64.7x 94.03 100 0 100 0.05 GCF_003044505.1 POXB01 2149 2207 0 0 3 54 1 Neisseria_subflava_homd_HMT_476 GCA_003044525.1 HMT-101 C2009010520 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava C2009010520 21 2176785 49.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/525/GCA_003044525.1_ASM304452v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA428750 28449 SAMN08299208 ASM304452v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.470 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 49.1x 94.83 99.92 0 100 0.02 GCF_003044525.1 POXD01 2035 2112 2112 18 3 55 1 Neisseria_perflava_homd_HMT_101 GCA_003044545.1 HMT-092 C2009035459 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-092 Neisseria weaveri C2009035459 34 2147612 48.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/545/GCA_003044545.1_ASM304454v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria weaveri PRJNA428750 28091 SAMN08299210 ASM304454v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.496 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 67.1x 99.13 100 0.43 100 0 GCF_003044545.1 POXF01 1941 2008 2008 13 3 49 2 Neisseria_weaveri_homd_HMT_092 GCA_003044565.1 HMT-764 C2010005502 Named Cultivated Oral (Abundance: High) HMT-764 Neisseria sicca C2010005502 16 2782649 50.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/565/GCA_003044565.1_ASM304456v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sicca_A PRJNA428750 490 SAMN08299211 ASM304456v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.510 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 23.3x 94.55 99.7 0.06 100 0.03 GCF_003044565.1 POXG01 2591 2673 2673 20 3 58 1 Neisseria_sicca_homd_HMT_764 GCA_003044585.1 HMT-101 C2011004960 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava C2011004960 20 2226776 49.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/585/GCA_003044585.1_ASM304458v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA428750 28449 SAMN08299215 ASM304458v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.570 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 19.0x 94.83 99.92 0 100 0.01 GCF_003044585.1 POXK01 2130 2206 2206 18 3 54 1 Neisseria_perflava_homd_HMT_101 GCA_003044605.1 HMT-598 C2010010207 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata C2010010207 48 2489623 53.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/605/GCA_003044605.1_ASM304460v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA428750 495 SAMN08299212 ASM304460v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.530 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 18.8x 96.63 99.89 0.23 100 0.05 GCF_003044605.1 POXH01 2395 2490 2490 40 3 51 1 Neisseria_elongata_homd_HMT_598 GCA_003044625.1 HMT-598 C2011003085 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata C2011003085 31 2320322 54.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/625/GCA_003044625.1_ASM304462v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA428750 495 SAMN08299214 ASM304462v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.556 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 31.9x 96.62 99.95 0.15 99.99 0.01 GCF_003044625.1 POXJ01 2218 2290 2290 14 3 54 1 Neisseria_elongata_homd_HMT_598 GCA_003044645.1 HMT-476 C2011009653 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava C2011009653 23 2313531 48.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/645/GCA_003044645.1_ASM304464v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_B PRJNA428750 28449 SAMN08299216 ASM304464v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.583 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 15.8x 94.82 99.92 0.34 100 0.06 GCF_003044645.1 POXL01 2167 2251 2251 27 3 53 1 Neisseria_subflava_homd_HMT_476 GCA_003044665.1 HMT-476 C2011033015 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava C2011033015 36 2156548 49.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/665/GCA_003044665.1_ASM304466v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA428750 28449 SAMN08299219 ASM304466v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.630 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 26.1x 95.14 99.7 0.11 100 0.33 GCF_003044665.1 POXO01 2015 2108 2108 36 3 53 1 Neisseria_subflava_homd_HMT_476 GCA_003044675.1 HMT-956 C2012028592 Named Cultivated Oral (Abundance: High) HMT-956 Neisseria cinerea C2012028592 11 1901573 50.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/675/GCA_003044675.1_ASM304467v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria cinerea PRJNA428750 483 SAMN08299221 ASM304467v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.656 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 30.9x 97.03 98.06 0 100 0 GCF_003044675.1 POXQ01 1776 1849 1849 16 3 53 1 Neisseria_cinerea_homd_HMT_956 GCA_003044725.1 HMT-598 C2013018262 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata C2013018262 35 2469171 54.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/725/GCA_003044725.1_ASM304472v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA428750 495 SAMN08299226 ASM304472v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.730 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 10.4x 96.59 99.72 0.49 100 0.18 GCF_003044725.1 POXV01 2351 2426 2426 15 3 56 1 Neisseria_elongata_homd_HMT_598 GCA_003044745.1 HMT-956 C2013024221 Named Cultivated Oral (Abundance: High) HMT-956 Neisseria cinerea C2013024221 16 1865434 50.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/745/GCA_003044745.1_ASM304474v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria cinerea PRJNA428750 483 SAMN08299227 ASM304474v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.743 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 14.2x 97.67 98.34 0 100 0 GCF_003044745.1 POXW01 1766 1850 1850 26 3 54 1 Neisseria_cinerea_homd_HMT_956 GCA_003044765.1 HMT-682 C2014002478 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa C2014002478 124 2529169 51.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/765/GCA_003044765.1_ASM304476v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa PRJNA428750 490 SAMN08299228 ASM304476v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.756 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 16.8x 95.69 99.64 0 100 0 GCF_003044765.1 POXX01 2251 2329 2329 17 3 57 1 Neisseria_mucosa_homd_HMT_682 GCA_003044785.1 HMT-598 C2014003241 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata C2014003241 35 2399453 54.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/785/GCA_003044785.1_ASM304478v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA428750 495 SAMN08299229 ASM304478v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.770 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 20.1x 96.72 99.91 0.15 100 0.08 GCF_003044785.1 POXY01 2249 2348 2348 40 3 55 1 Neisseria_elongata_homd_HMT_598 GCA_003044825.1 HMT-956 C2014013859 Named Cultivated Oral (Abundance: High) HMT-956 Neisseria cinerea C2014013859 13 1876226 50.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/825/GCA_003044825.1_ASM304482v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria cinerea PRJNA428750 483 SAMN08299230 ASM304482v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.783 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 18.0x 97.21 98.34 0 100 0 GCF_003044825.1 POXZ01 1776 1863 1863 29 3 54 1 Neisseria_cinerea_homd_HMT_956 GCA_003044845.1 HMT-476 C2008002238 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava C2008002238 32 2170564 49.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/845/GCA_003044845.1_ASM304484v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA428750 28449 SAMN08299207 ASM304484v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.456 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 35.1x 95.05 99.7 0 100 0.48 GCF_003044845.1 POXC01 2045 2135 2135 31 5 53 1 Neisseria_subflava_homd_HMT_476 GCA_003044855.1 HMT-956 C2014019557 Named Cultivated Oral (Abundance: High) HMT-956 Neisseria cinerea C2014019557 11 1922289 50.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/855/GCA_003044855.1_ASM304485v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria cinerea PRJNA428750 483 SAMN08299231 ASM304485v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.800 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 12.1x 97.08 98.29 0.01 100 0 GCF_003044855.1 POYA01 1842 1929 1929 29 3 54 1 Neisseria_cinerea_homd_HMT_956 GCA_003044885.1 HMT-092 C2010015191 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-092 Neisseria weaveri C2010015191 20 2143813 49.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/885/GCA_003044885.1_ASM304488v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria weaveri PRJNA428750 28091 SAMN08299213 ASM304488v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.543 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 62.3x 98.99 100 0.43 100 0 GCF_003044885.1 POXI01 1936 2006 2006 16 3 49 2 Neisseria_weaveri_homd_HMT_092 GCA_003044905.1 HMT-092 C2009028987 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-092 Neisseria weaveri C2009028987 28 2198878 49.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/905/GCA_003044905.1_ASM304490v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria weaveri PRJNA428750 28091 SAMN08299209 ASM304490v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.483 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 31.2x 98.93 100 0.85 100 0 GCF_003044905.1 POXE01 2025 2093 2093 14 3 49 2 Neisseria_weaveri_homd_HMT_092 GCA_003044925.1 HMT-101 C2011020198 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava C2011020198 28 2422689 48.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/925/GCA_003044925.1_ASM304492v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava_A PRJNA428750 28449 SAMN08299217 ASM304492v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.596 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 47.0x 94.76 100 0.56 100 0.13 GCF_003044925.1 POXM01 2274 2331 0 0 3 53 1 Neisseria_perflava_homd_HMT_101 GCA_003044935.1 HMT-476 C2012011976 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava C2012011976 9 2159006 49.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/935/GCA_003044935.1_ASM304493v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_E PRJNA428750 28449 SAMN08299220 ASM304493v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.643 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 42.0x 94.79 99.92 0.11 100 0.01 GCF_003044935.1 POXP01 2016 2093 2093 18 3 55 1 Neisseria_subflava_homd_HMT_476 GCA_003044965.1 HMT-476 C2011020199 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava C2011020199 31 2291329 49.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/965/GCA_003044965.1_ASM304496v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA428750 28449 SAMN08299218 ASM304496v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.616 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 17.0x 95.08 99.92 0.79 100 0.39 GCF_003044965.1 POXN01 2147 2233 2233 28 3 54 1 Neisseria_subflava_homd_HMT_476 GCA_003044985.1 HMT-598 C2013010062 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata C2013010062 53 2509681 53.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/985/GCA_003044985.1_ASM304498v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA428750 495 SAMN08299223 ASM304498v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.686 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 35.0x 96.65 99.87 0.23 100 0.11 GCF_003044985.1 POXS01 2386 2471 2471 28 3 53 1 Neisseria_elongata_homd_HMT_598 GCA_003044995.1 HMT-092 C2013013825 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-092 Neisseria weaveri C2013013825 21 2140496 49.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/044/995/GCA_003044995.1_ASM304499v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria weaveri PRJNA428750 28091 SAMN08299225 ASM304499v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.716 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 17.6x 99.17 100 0.43 100 0.01 GCF_003044995.1 POXU01 1930 1997 1997 13 3 49 2 Neisseria_weaveri_homd_HMT_092 GCA_003045025.1 HMT-476 C2014021188 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava C2014021188 23 2231960 49.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/045/025/GCA_003045025.1_ASM304502v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA428750 28449 SAMN08299232 ASM304502v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.813 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 22.0x 95.06 99.92 0 100 0.39 GCF_003045025.1 POYB01 2106 2186 2186 21 5 53 1 Neisseria_subflava_homd_HMT_476 GCA_003045035.1 HMT-737 C2013011231 Named Cultivated Oral (Abundance: Scarce) HMT-737 Neisseria polysaccharea C2013011231 46 2124254 51.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/045/035/GCA_003045035.1_ASM304503v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria polysaccharea PRJNA428750 489 SAMN08299224 ASM304503v1 Contig SPAdes v. 3.11 2018-01-05T15:07:03.700 USA: Minnesota not applicable Illumina MiSeq Centers for Disease Control and Prevention 23.4x 94.93 99.92 0 100 0.01 GCF_003045035.1 POXT01 2006 2083 2083 17 3 56 1 Neisseria_polysaccharea_homd_HMT_737 GCA_003047065.1 HMT-529 DSM 20079 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-529 Lactobacillus acidophilus DSM 20079 1 2009973 34.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/047/065/GCA_003047065.1_ASM304706v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus PRJNA379350 1579 SAMN06606133 ASM304706v1 Complete Genome SMRT anlysis 2.3 v. HGAP protocol 2 2017-03-16T03:48:03.243 France PacBio Kyungpook National University 546.2x 99.93 98.94 1.52 99.79 2.68 GCF_003047065.1 1917 2033 2033 43 12 60 1 Lactobacillus_acidophilus_homd_HMT_529 GCA_003048375.1 HMT-433 P2CDO4 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P2CDO4 2 2095236 39.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/375/GCA_003048375.1_ASM304837v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA388128 199 SAMN07160232 ASM304837v1 Complete Genome Canu v. 1.3 2017-05-23T22:15:03.070 Australia Oral PacBio University of New South Wales 41.6x 88.67 99.51 0.12 99.98 0.03 GCF_003048375.1 2017 2075 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_003048375.1 HMT-433 P2CDO4 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P2CDO4 2 2095236 39.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/375/GCA_003048375.1_ASM304837v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA388128 199 SAMN07160232 ASM304837v1 Complete Genome Canu v. 1.3 2017-05-23T22:15:03.070 Australia Oral PacBio University of New South Wales 41.6x 88.67 99.51 0.12 99.98 0.03 GCF_003048375.1 2017 2075 0 4 6 47 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048445.1 HMT-433 P26UCO-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P26UCO-S1 41 2076862 39.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/445/GCA_003048445.1_ASM304844v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA388128 199 SAMN08042496 ASM304844v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:04.087 Australia saliva Illumina MiSeq University of New South Wales 290.0x 88.7 99.51 0.12 99.97 0.01 GCF_003048445.1 PIQW01 2048 2092 2092 4 2 37 1 Campylobacter_concisus_HMT_433_575 GCA_003048445.1 HMT-433 P26UCO-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P26UCO-S1 41 2076862 39.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/445/GCA_003048445.1_ASM304844v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA388128 199 SAMN08042496 ASM304844v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:04.087 Australia saliva Illumina MiSeq University of New South Wales 290.0x 88.7 99.51 0.12 99.97 0.01 GCF_003048445.1 PIQW01 2048 2092 2092 4 2 37 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048575.1 HMT-575 H10O-S1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H10O-S1 13 1835588 37.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/575/GCA_003048575.1_ASM304857v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_U PRJNA388128 199 SAMN08042466 ASM304857v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.623 Australia saliva Illumina MiSeq University of New South Wales 77.0x 93.96 99.88 0.19 99.9 0.51 GCF_003048575.1 PIRZ01 1835 1885 0 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_003048575.1 HMT-575 H10O-S1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H10O-S1 13 1835588 37.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/575/GCA_003048575.1_ASM304857v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_U PRJNA388128 199 SAMN08042466 ASM304857v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.623 Australia saliva Illumina MiSeq University of New South Wales 77.0x 93.96 99.88 0.19 99.9 0.51 GCF_003048575.1 PIRZ01 1835 1885 0 4 2 43 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_003048595.2 HMT-575 P26UCO-S2 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 P26UCO-S2 2 1897765 37.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/595/GCA_003048595.2_ASM304859v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_L PRJNA388128 199 SAMN08042497 ASM304859v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:04.103 Australia saliva Oxford Nanopore MiniION University of New South Wales 36.0x 93.91 99.88 0.37 99.98 0.05 GCF_003048595.2 1916 1975 0 5 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_003048595.2 HMT-575 P26UCO-S2 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 P26UCO-S2 2 1897765 37.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/595/GCA_003048595.2_ASM304859v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_L PRJNA388128 199 SAMN08042497 ASM304859v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:04.103 Australia saliva Oxford Nanopore MiniION University of New South Wales 36.0x 93.91 99.88 0.37 99.98 0.05 GCF_003048595.2 1916 1975 0 5 6 47 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_003048605.1 HMT-433 H11O-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H11O-S2 18 1948821 39.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/605/GCA_003048605.1_ASM304860v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA388128 199 SAMN08042468 ASM304860v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.653 Australia saliva Illumina MiSeq University of New South Wales 142.0x 88.56 99.51 0.37 99.96 0.01 GCF_003048605.1 PIRX01 1895 1939 1939 4 2 37 1 Campylobacter_concisus_HMT_433_575 GCA_003048605.1 HMT-433 H11O-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H11O-S2 18 1948821 39.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/605/GCA_003048605.1_ASM304860v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA388128 199 SAMN08042468 ASM304860v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.653 Australia saliva Illumina MiSeq University of New South Wales 142.0x 88.56 99.51 0.37 99.96 0.01 GCF_003048605.1 PIRX01 1895 1939 1939 4 2 37 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048615.2 HMT-433 H16O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H16O-S1 1 1987364 39.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/615/GCA_003048615.2_ASM304861v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA388128 199 SAMN08042471 ASM304861v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.710 Australia saliva Oxford Nanopore MiniION University of New South Wales 126.0x 88.4 99.51 0 99.98 0.39 GCF_003048615.2 1925 1983 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_003048615.2 HMT-433 H16O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H16O-S1 1 1987364 39.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/615/GCA_003048615.2_ASM304861v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA388128 199 SAMN08042471 ASM304861v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.710 Australia saliva Oxford Nanopore MiniION University of New South Wales 126.0x 88.4 99.51 0 99.98 0.39 GCF_003048615.2 1925 1983 0 4 6 47 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048645.1 HMT-433 P16UCO-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P16UCO-S2 11 1979247 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/645/GCA_003048645.1_ASM304864v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA388128 199 SAMN08042492 ASM304864v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:04.017 Australia saliva Illumina MiSeq University of New South Wales 122.0x 88.67 99.51 0.49 99.94 0.13 GCF_003048645.1 PIRA01 1948 1994 1994 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_003048645.1 HMT-433 P16UCO-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P16UCO-S2 11 1979247 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/645/GCA_003048645.1_ASM304864v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA388128 199 SAMN08042492 ASM304864v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:04.017 Australia saliva Illumina MiSeq University of New South Wales 122.0x 88.67 99.51 0.49 99.94 0.13 GCF_003048645.1 PIRA01 1948 1994 1994 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048675.2 HMT-433 P1CDO2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P1CDO2 1 2031332 39.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/675/GCA_003048675.2_ASM304867v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_F PRJNA388128 199 SAMN08042482 ASM304867v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.867 Australia saliva Oxford Nanopore MiniION University of New South Wales 11.0x 88.73 99.51 0.31 99.96 0.07 GCF_003048675.2 1969 2028 0 4 6 48 1 Campylobacter_concisus_HMT_433_575 GCA_003048675.2 HMT-433 P1CDO2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P1CDO2 1 2031332 39.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/675/GCA_003048675.2_ASM304867v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_F PRJNA388128 199 SAMN08042482 ASM304867v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.867 Australia saliva Oxford Nanopore MiniION University of New South Wales 11.0x 88.73 99.51 0.31 99.96 0.07 GCF_003048675.2 1969 2028 0 4 6 48 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048685.2 HMT-433 P1CDO3 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P1CDO3 1 2051359 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/685/GCA_003048685.2_ASM304868v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_D PRJNA388128 199 SAMN08042483 ASM304868v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.880 Australia saliva Oxford Nanopore MiniION University of New South Wales 1045.0x 88.63 99.51 0.56 99.99 0 GCF_003048685.2 1973 2030 0 4 6 46 1 Campylobacter_concisus_HMT_433_575 GCA_003048685.2 HMT-433 P1CDO3 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P1CDO3 1 2051359 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/685/GCA_003048685.2_ASM304868v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_D PRJNA388128 199 SAMN08042483 ASM304868v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.880 Australia saliva Oxford Nanopore MiniION University of New South Wales 1045.0x 88.63 99.51 0.56 99.99 0 GCF_003048685.2 1973 2030 0 4 6 46 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048695.2 HMT-575 P10CDO-S2 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 P10CDO-S2 1 1932636 37.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/695/GCA_003048695.2_ASM304869v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_Y PRJNA388128 199 SAMN08042488 ASM304869v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.953 Australia saliva Oxford Nanopore MiniION University of New South Wales 109.0x 93.88 99.88 0.38 99.97 0.12 GCF_003048695.2 1936 1994 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_003048695.2 HMT-575 P10CDO-S2 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 P10CDO-S2 1 1932636 37.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/695/GCA_003048695.2_ASM304869v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_Y PRJNA388128 199 SAMN08042488 ASM304869v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.953 Australia saliva Oxford Nanopore MiniION University of New South Wales 109.0x 93.88 99.88 0.38 99.97 0.12 GCF_003048695.2 1936 1994 0 4 6 47 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_003048705.1 HMT-433 H29O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H29O-S1 47 1998791 39.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/705/GCA_003048705.1_ASM304870v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_D PRJNA388128 199 SAMN08042480 ASM304870v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.840 Australia saliva Illumina MiSeq University of New South Wales 253.0x 88.6 99.51 0.68 99.98 0.05 GCF_003048705.1 PIRL01 1972 2018 2018 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_003048705.1 HMT-433 H29O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H29O-S1 47 1998791 39.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/705/GCA_003048705.1_ASM304870v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_D PRJNA388128 199 SAMN08042480 ASM304870v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.840 Australia saliva Illumina MiSeq University of New South Wales 253.0x 88.6 99.51 0.68 99.98 0.05 GCF_003048705.1 PIRL01 1972 2018 2018 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048755.1 HMT-575 H12O-S1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H12O-S1 11 1920100 37.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/755/GCA_003048755.1_ASM304875v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_I PRJNA388128 199 SAMN08042469 ASM304875v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.667 Australia saliva Illumina MiSeq University of New South Wales 211.0x 93.92 99.88 0 99.87 0.01 GCF_003048755.1 PIRW01 1957 2012 2012 5 4 45 1 Campylobacter_concisus_HMT_433_575 GCA_003048755.1 HMT-575 H12O-S1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H12O-S1 11 1920100 37.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/755/GCA_003048755.1_ASM304875v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_I PRJNA388128 199 SAMN08042469 ASM304875v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.667 Australia saliva Illumina MiSeq University of New South Wales 211.0x 93.92 99.88 0 99.87 0.01 GCF_003048755.1 PIRW01 1957 2012 2012 5 4 45 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_003048765.1 HMT-433 P27CDO-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P27CDO-S1 29 1997063 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/765/GCA_003048765.1_ASM304876v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_D PRJNA388128 199 SAMN08042498 ASM304876v1 Scaffold SPAdes v. 3.9.0 2017-11-19T22:48:04.117 Australia saliva Illumina MiSeq University of New South Wales 312.0x 88.59 99.51 0.68 99.97 0.05 GCF_003048765.1 PIQU01 1977 2019 2019 4 2 35 1 Campylobacter_concisus_HMT_433_575 GCA_003048765.1 HMT-433 P27CDO-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P27CDO-S1 29 1997063 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/765/GCA_003048765.1_ASM304876v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_D PRJNA388128 199 SAMN08042498 ASM304876v1 Scaffold SPAdes v. 3.9.0 2017-11-19T22:48:04.117 Australia saliva Illumina MiSeq University of New South Wales 312.0x 88.59 99.51 0.68 99.97 0.05 GCF_003048765.1 PIQU01 1977 2019 2019 4 2 35 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048775.2 HMT-575 P27CDO-S2 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 P27CDO-S2 2 1834912 37.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/775/GCA_003048775.2_ASM304877v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_I PRJNA388128 199 SAMN08042499 ASM304877v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:04.133 Australia saliva Oxford Nanopore MiniION University of New South Wales 271.0x 93.91 99.88 0.12 99.92 0.02 GCF_003048775.2 1792 1851 0 5 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_003048775.2 HMT-575 P27CDO-S2 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 P27CDO-S2 2 1834912 37.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/775/GCA_003048775.2_ASM304877v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_I PRJNA388128 199 SAMN08042499 ASM304877v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:04.133 Australia saliva Oxford Nanopore MiniION University of New South Wales 271.0x 93.91 99.88 0.12 99.92 0.02 GCF_003048775.2 1792 1851 0 5 6 47 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_003048815.1 HMT-433 H9O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H9O-S1 19 2085913 39.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/815/GCA_003048815.1_ASM304881v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN08042465 ASM304881v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.610 Australia saliva Illumina MiSeq University of New South Wales 154.0x 88.8 99.51 0.49 99.95 0.09 GCF_003048815.1 PISA01 2010 2059 2059 4 2 42 1 Campylobacter_concisus_HMT_433_575 GCA_003048815.1 HMT-433 H9O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H9O-S1 19 2085913 39.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/815/GCA_003048815.1_ASM304881v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN08042465 ASM304881v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.610 Australia saliva Illumina MiSeq University of New South Wales 154.0x 88.8 99.51 0.49 99.95 0.09 GCF_003048815.1 PISA01 2010 2059 2059 4 2 42 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048835.2 HMT-433 P13UCO-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P13UCO-S1 2 2002415 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/835/GCA_003048835.2_ASM304883v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_D PRJNA388128 199 SAMN08042490 ASM304883v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.980 Australia saliva Oxford Nanopore MiniION University of New South Wales 47.0x 88.61 99.51 0.68 99.97 0.05 GCF_003048835.2 1961 2019 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_003048835.2 HMT-433 P13UCO-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P13UCO-S1 2 2002415 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/835/GCA_003048835.2_ASM304883v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_D PRJNA388128 199 SAMN08042490 ASM304883v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.980 Australia saliva Oxford Nanopore MiniION University of New South Wales 47.0x 88.61 99.51 0.68 99.97 0.05 GCF_003048835.2 1961 2019 0 4 6 47 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048845.1 HMT-433 P16UCO-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P16UCO-S1 24 1923266 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/845/GCA_003048845.1_ASM304884v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA388128 199 SAMN08042491 ASM304884v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.997 Australia saliva Illumina MiSeq University of New South Wales 89.0x 88.37 99.51 0 99.98 0.17 GCF_003048845.1 PIRB01 1879 1925 1925 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_003048845.1 HMT-433 P16UCO-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P16UCO-S1 24 1923266 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/845/GCA_003048845.1_ASM304884v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA388128 199 SAMN08042491 ASM304884v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.997 Australia saliva Illumina MiSeq University of New South Wales 89.0x 88.37 99.51 0 99.98 0.17 GCF_003048845.1 PIRB01 1879 1925 1925 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048875.2 HMT-433 P11CDO-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P11CDO-S1 2 2028838 39.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/875/GCA_003048875.2_ASM304887v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN08042489 ASM304887v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.967 Australia saliva Oxford Nanopore MiniION University of New South Wales 38.0x 88.77 99.51 0.12 99.98 0.05 GCF_003048875.2 1942 2000 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_003048875.2 HMT-433 P11CDO-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P11CDO-S1 2 2028838 39.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/875/GCA_003048875.2_ASM304887v2 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN08042489 ASM304887v2 Complete Genome Canu v. 1.7.1 2017-11-19T22:48:03.967 Australia saliva Oxford Nanopore MiniION University of New South Wales 38.0x 88.77 99.51 0.12 99.98 0.05 GCF_003048875.2 1942 2000 0 4 6 47 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048895.1 HMT-433 P7UCO-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P7UCO-S2 26 1971692 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/895/GCA_003048895.1_ASM304889v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN08042486 ASM304889v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.923 Australia saliva Illumina MiSeq University of New South Wales 327.0x 88.88 99.51 0.37 99.94 0.05 GCF_003048895.1 PIRG01 1926 1970 1970 4 2 37 1 Campylobacter_concisus_HMT_433_575 GCA_003048895.1 HMT-433 P7UCO-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P7UCO-S2 26 1971692 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/895/GCA_003048895.1_ASM304889v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN08042486 ASM304889v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.923 Australia saliva Illumina MiSeq University of New South Wales 327.0x 88.88 99.51 0.37 99.94 0.05 GCF_003048895.1 PIRG01 1926 1970 1970 4 2 37 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048965.1 HMT-575 H26O-S1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H26O-S1 6 1838331 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/965/GCA_003048965.1_ASM304896v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_I PRJNA388128 199 SAMN08042476 ASM304896v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.783 Australia saliva Illumina MiSeq University of New South Wales 493.0x 93.87 99.88 0 99.92 0.01 GCF_003048965.1 PIRP01 1844 1898 1898 4 4 45 1 Campylobacter_concisus_HMT_433_575 GCA_003048965.1 HMT-575 H26O-S1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H26O-S1 6 1838331 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/965/GCA_003048965.1_ASM304896v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_I PRJNA388128 199 SAMN08042476 ASM304896v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.783 Australia saliva Illumina MiSeq University of New South Wales 493.0x 93.87 99.88 0 99.92 0.01 GCF_003048965.1 PIRP01 1844 1898 1898 4 4 45 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_003048985.1 HMT-433 H20O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H20O-S1 26 2001690 39.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/985/GCA_003048985.1_ASM304898v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AY PRJNA388128 199 SAMN08042473 ASM304898v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.740 Australia saliva Illumina MiSeq University of New South Wales 174.0x 88.82 99.51 0.12 99.99 0.17 GCF_003048985.1 PIRS01 1968 2014 2014 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_003048985.1 HMT-433 H20O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H20O-S1 26 2001690 39.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/985/GCA_003048985.1_ASM304898v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AY PRJNA388128 199 SAMN08042473 ASM304898v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.740 Australia saliva Illumina MiSeq University of New South Wales 174.0x 88.82 99.51 0.12 99.99 0.17 GCF_003048985.1 PIRS01 1968 2014 2014 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003048995.1 HMT-575 H15O-S1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H15O-S1 14 1836235 37.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/995/GCA_003048995.1_ASM304899v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJNA388128 199 SAMN08042470 ASM304899v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.693 Australia saliva Illumina MiSeq University of New South Wales 574.0x 99.39 99.88 0 99.92 0.02 GCF_003048995.1 PIRV01 1861 1909 1909 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_003048995.1 HMT-575 H15O-S1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H15O-S1 14 1836235 37.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/995/GCA_003048995.1_ASM304899v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJNA388128 199 SAMN08042470 ASM304899v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.693 Australia saliva Illumina MiSeq University of New South Wales 574.0x 99.39 99.88 0 99.92 0.02 GCF_003048995.1 PIRV01 1861 1909 1909 4 2 41 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_003049025.1 HMT-433 H11O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H11O-S1 26 1980595 39.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/049/025/GCA_003049025.1_ASM304902v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN08042467 ASM304902v1 Scaffold SPAdes v. 3.9.0 2017-11-19T22:48:03.640 Australia saliva Illumina MiSeq University of New South Wales 81.0x 88.61 99.51 0.43 99.92 0 GCF_003049025.1 PIRY01 1938 1985 1985 4 2 40 1 Campylobacter_concisus_HMT_433_575 GCA_003049025.1 HMT-433 H11O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H11O-S1 26 1980595 39.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/049/025/GCA_003049025.1_ASM304902v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN08042467 ASM304902v1 Scaffold SPAdes v. 3.9.0 2017-11-19T22:48:03.640 Australia saliva Illumina MiSeq University of New South Wales 81.0x 88.61 99.51 0.43 99.92 0 GCF_003049025.1 PIRY01 1938 1985 1985 4 2 40 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003049045.1 HMT-433 H7O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H7O-S1 17 1942077 39.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/049/045/GCA_003049045.1_ASM304904v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJNA388128 199 SAMN08042464 ASM304904v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.593 Australia saliva Illumina MiSeq University of New South Wales 127.0x 88.8 99.51 0.37 99.97 0.07 GCF_003049045.1 PISB01 1923 1973 1973 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_003049045.1 HMT-433 H7O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H7O-S1 17 1942077 39.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/049/045/GCA_003049045.1_ASM304904v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJNA388128 199 SAMN08042464 ASM304904v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.593 Australia saliva Illumina MiSeq University of New South Wales 127.0x 88.8 99.51 0.37 99.97 0.07 GCF_003049045.1 PISB01 1923 1973 1973 4 2 43 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003049065.1 HMT-433 H3O1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H3O1 22 1938159 39.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/049/065/GCA_003049065.1_ASM304906v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA388128 199 SAMN08042463 ASM304906v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.573 Australia saliva Illumina MiSeq University of New South Wales 191.0x 88.59 99.51 0.37 99.98 0.07 GCF_003049065.1 PISC01 1886 1930 1930 4 2 37 1 Campylobacter_concisus_HMT_433_575 GCA_003049065.1 HMT-433 H3O1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H3O1 22 1938159 39.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/049/065/GCA_003049065.1_ASM304906v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA388128 199 SAMN08042463 ASM304906v1 Contig SPAdes v. 3.9.0 2017-11-19T22:48:03.573 Australia saliva Illumina MiSeq University of New South Wales 191.0x 88.59 99.51 0.37 99.98 0.07 GCF_003049065.1 PISC01 1886 1930 1930 4 2 37 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003049525.1 HMT-614 ATCC 7055 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-614 Lysinibacillus fusiformis ATCC 7055 64 4796895 37.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/049/525/GCA_003049525.1_ASM304952v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus;s__Lysinibacillus fusiformis PRJNA445714 28031 SAMN08796437 ASM304952v1 Contig SPAdes v. 3.9.0 2018-03-26T15:11:02.380 Unknown soil Illumina MiSeq Virginia Polytechnic Institute and State University 500.0x 99.99 99.34 0.99 100 0.35 GCF_003049525.1 PYWL01 4736 4935 4935 91 11 96 1 Lysinibacillus_fusiformis_homd_HMT_614 GCA_003054025.1 HMT-329 DSM 22902 Named Cultivated Oral (Abundance: High) HMT-329 Capnocytophaga leadbetteri DSM 22902 40 2636893 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/054/025/GCA_003054025.1_ASM305402v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga leadbetteri PRJNA443918 327575 SAMN08779108 ASM305402v1 Scaffold SPAdes v. 3.9.0 2018-03-22T21:08:47.403 missing missing Illumina HiSeq DOE Joint Genome Institute 415.0x 100 0.48 99.99 0.31 GCF_003054025.1 QBKG01 2344 2398 2398 8 2 43 1 Capnocytophaga_leadbetteri_homd_HMT_329 GCA_003072625.1 HMT-818 WHH1689 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-818 Limosilactobacillus reuteri WHH1689 1 2044184 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/072/625/GCA_003072625.1_ASM307262v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus suis PRJNA431039 1598 SAMN08382659 ASM307262v1 Complete Genome CLC NGS Cell v. 2.0 2018-01-22T03:18:05.720 China: Tibetan Plateau Highland barley wine PacBio Hangzhou Wahaha Group Co., LTD. 161.0x 96.06 99.46 0 99.99 0.03 GCF_003072625.1 2081 2269 2269 100 18 69 1 Limosilactobacillus_reuteri_homd_HMT_818 GCA_003116505.1 HMT-433 H19O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H19O-S1 31 2008280 39.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/116/505/GCA_003116505.1_ASM311650v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN08042472 ASM311650v1 Scaffold SPAdes v. 3.9.0 2017-11-19T22:48:03.727 Australia saliva Illumina MiSeq University of New South Wales 342.0x 88.69 99.51 0.12 99.95 0.12 GCF_003116505.1 PIRT01 1979 2025 2025 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_003116505.1 HMT-433 H19O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H19O-S1 31 2008280 39.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/116/505/GCA_003116505.1_ASM311650v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN08042472 ASM311650v1 Scaffold SPAdes v. 3.9.0 2017-11-19T22:48:03.727 Australia saliva Illumina MiSeq University of New South Wales 342.0x 88.69 99.51 0.12 99.95 0.12 GCF_003116505.1 PIRT01 1979 2025 2025 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_003122005.1 HMT-368 AMT Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea AMT 104 3406678 70.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/122/005/GCA_003122005.1_ASM312200v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA454890 37915 SAMN09060711 ASM312200v1 Contig SPAdes v. 3.8.0 2018-05-03T15:58:11.666 USA: Manchester, NH laboratory Illumina HiSeq University of New Hampshire - Manchester 68.0x 91.86 1.37 93.08 2.13 GCF_003122005.1 QETM01 3208 3286 3286 21 4 52 1 Dietzia_cinnamea_homd_HMT_368 GCA_003129975.1 HMT-426 PN_755 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii PN_755 22 2358555 42.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/129/975/GCA_003129975.1_ASM312997v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA397823 2025884 SAMN07488460 ASM312997v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:08.060 Denmark blood Illumina MiSeq Aarhus University 93.0x 99.98 99.89 0.25 100 0.1 GCF_003129975.1 NRCK01 2128 2247 2247 63 4 51 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003130015.1 HMT-426 PN_649 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii PN_649 27 2379268 42.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/015/GCA_003130015.1_ASM313001v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA397823 2025884 SAMN07488459 ASM313001v1 Contig SPAdes v. 3.9 2017-08-10T04:04:08.046 Denmark blood Illumina MiSeq Aarhus University 193.0x 97 99.89 0.25 100 0 GCF_003130015.1 NRCL01 2159 2278 2278 63 4 51 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003130035.1 HMT-426 PN_537 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii PN_537 20 2329865 42.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/035/GCA_003130035.1_ASM313003v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA397823 2025884 SAMN07488458 ASM313003v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:08.033 Denmark Periappendicular abscess Illumina MiSeq Aarhus University 164.2x 99.95 99.89 0.25 100 0.11 GCF_003130035.1 NRCM01 2093 2208 2208 62 4 48 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003130055.1 HMT-426 PN_452 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii PN_452 17 2366859 42.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/055/GCA_003130055.1_ASM313005v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA397823 2025884 SAMN07488454 ASM313005v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.980 Denmark Pus, eye Illumina MiSeq Aarhus University 203.1x 98.07 99.89 0.25 100 0.08 GCF_003130055.1 NRCQ01 2153 2273 2273 62 4 53 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003130075.1 HMT-762 HK_296 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis HK_296 19 1953597 42.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/075/GCA_003130075.1_ASM313007v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_A PRJNA397823 739 SAMN07488448 ASM313007v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.890 Denmark sputum Illumina MiSeq Aarhus University 166.0x 94.79 99.89 0 99.99 0.02 GCF_003130075.1 NRCW01 1813 1957 1957 92 4 47 1 Aggregatibacter_segnis_homd_HMT_762 GCA_003130095.1 HMT-762 CCUG 46700 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis CCUG 46700 12 1978324 42.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/095/GCA_003130095.1_ASM313009v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis PRJNA397823 739 SAMN07488447 ASM313009v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.873 Sweden Abscess Illumina MiSeq Aarhus University 167.7x 98.35 99.89 0 100 0 GCF_003130095.1 NRCX01 1852 1944 1944 37 4 50 1 Aggregatibacter_segnis_homd_HMT_762 GCA_003130125.1 HMT-545 PN_517 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus PN_517 30 2346714 42.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/125/GCA_003130125.1_ASM313012v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA397823 732 SAMN07488445 ASM313012v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.847 Denmark Wound, finger Illumina MiSeq Aarhus University 144.6x 96.01 99.77 0.02 100 0.18 GCF_003130125.1 NRCZ01 2097 2209 2209 55 4 52 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_003130145.1 HMT-545 PN_444 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus PN_444 31 2264950 42.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/145/GCA_003130145.1_ASM313014v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA397823 732 SAMN07488444 ASM313014v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.830 Denmark brain abscess Illumina MiSeq Aarhus University 214.2x 97.96 99.89 0.04 100 0.09 GCF_003130145.1 NRDA01 2099 2213 2213 57 4 52 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_003130165.1 HMT-531 PN_800 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_800 23 2032621 44.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/165/GCA_003130165.1_ASM313016v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA397823 714 SAMN07488441 ASM313016v1 Contig SPAdes v. 3.9 2017-08-10T04:04:07.783 Denmark brain abscess Illumina MiSeq Aarhus University 230.6x 99.88 99.89 0.23 100 0 GCF_003130165.1 NRDD01 1925 2032 2032 55 4 47 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_003130195.1 HMT-545 PN_521 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus PN_521 26 2308908 42.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/195/GCA_003130195.1_ASM313019v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA397823 732 SAMN07488446 ASM313019v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.860 Denmark Wound, finger Illumina MiSeq Aarhus University 212.7x 96.87 99.77 0.27 100 0.16 GCF_003130195.1 NRCY01 2168 2280 2280 56 4 51 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_003130255.1 HMT-426 PN_528 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii PN_528 3 2457230 42.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/255/GCA_003130255.1_ASM313025v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA397823 2025884 SAMN07488457 ASM313025v1 Contig SPAdes v. 3.9 2017-08-10T04:04:08.020 Denmark Abdominal abscess Illumina MiSeq Aarhus University 162.5x 99.89 0.25 100 0.09 GCF_003130255.1 NRCN01 2222 2361 2361 64 19 55 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003130285.1 HMT-426 PN_522 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii PN_522 20 2330461 42.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/285/GCA_003130285.1_ASM313028v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA397823 2025884 SAMN07488456 ASM313028v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:08.006 Denmark Conjunctiva Illumina MiSeq Aarhus University 164.5x 99.98 99.89 0.25 100 0.12 GCF_003130285.1 NRCO01 2094 2214 2214 63 4 52 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003130305.1 HMT-426 PN_516 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii PN_516 21 2367815 42.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/305/GCA_003130305.1_ASM313030v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA397823 2025884 SAMN07488455 ASM313030v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.990 Denmark Wound, finger Illumina MiSeq Aarhus University 191.6x 99.86 99.89 0.25 100 0.13 GCF_003130305.1 NRCP01 2146 2263 2263 64 4 48 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003130325.1 HMT-513 PN_651 Unnamed Cultivated Oral (Abundance: Low) HMT-513 Aggregatibacter sp. HMT-513 PN_651 20 1965663 42.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/325/GCA_003130325.1_ASM313032v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_A PRJNA397823 739 SAMN07488450 ASM313032v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.917 Denmark blood Illumina MiSeq Aarhus University 245.2x 94.97 99.89 0 99.99 0.05 GCF_003130325.1 NRCU01 1872 1964 1964 30 10 51 1 Aggregatibacter_sp_HMT_513_homd_HMT_513 GCA_003130345.1 HMT-513 PN_450 Unnamed Cultivated Oral (Abundance: Low) HMT-513 Aggregatibacter sp. HMT-513 PN_450 16 1936332 42.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/345/GCA_003130345.1_ASM313034v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_A PRJNA397823 739 SAMN07488449 ASM313034v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.903 Denmark blood Illumina MiSeq Aarhus University 199.4x 94.88 99.89 0 100 0 GCF_003130345.1 NRCV01 1815 1902 1902 29 4 53 1 Aggregatibacter_sp_HMT_513_homd_HMT_513 GCA_003130365.1 HMT-545 HK_319 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus HK_319 48 2421966 42.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/365/GCA_003130365.1_ASM313036v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA397823 732 SAMN07488443 ASM313036v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.813 Denmark Dental plaque Illumina MiSeq Aarhus University 151.2x 96 99.89 0.02 100 0.18 GCF_003130365.1 NRDB01 2205 2312 2312 52 4 50 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_003130375.1 HMT-545 CCUG 11575 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus CCUG 11575 33 2368867 42.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/375/GCA_003130375.1_ASM313037v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA397823 732 SAMN07488442 ASM313037v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.797 Sweden brain abscess Illumina MiSeq Aarhus University 155.5x 96.1 99.89 0.48 100 0.33 GCF_003130375.1 NRDC01 2135 2244 2244 53 4 51 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_003130645.1 HMT-426 MELO_94 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii MELO_94 22 2345608 42.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/645/GCA_003130645.1_ASM313064v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA397823 2025884 SAMN07488453 ASM313064v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.963 Switzerland Conjunctiva, conjunctivitis Illumina MiSeq Aarhus University 131.4x 99.95 99.89 0.25 100 0.1 GCF_003130645.1 NRCR01 2104 2218 2218 60 4 49 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003130665.1 HMT-426 MELO_68 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii MELO_68 21 2427675 42.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/665/GCA_003130665.1_ASM313066v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA397823 2025884 SAMN07488451 ASM313066v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.933 Switzerland Pus, dacrocystitis Illumina MiSeq Aarhus University 193.6x 99.91 99.89 0.25 100 0.13 GCF_003130665.1 NRCT01 2241 2359 2359 64 4 49 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003130675.1 HMT-426 MELO_83 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii MELO_83 21 2375305 42.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/675/GCA_003130675.1_ASM313067v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA397823 2025884 SAMN07488452 ASM313067v1 Scaffold SPAdes v. 3.9 2017-08-10T04:04:07.946 Switzerland Maxillary sinus Illumina MiSeq Aarhus University 173.8x 99.96 99.89 0.25 100 0.11 GCF_003130675.1 NRCS01 2163 2284 2284 64 4 52 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003172975.1 HMT-768 10919 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus 10919 1 2145290 43.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/172/975/GCA_003172975.1_ASM317297v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA471712 1310 SAMN09214223 ASM317297v1 Complete Genome SPAdes v. 3.11.1 2018-05-16T15:16:13.696 missing dental plaque Illumina MiSeq University of Illinois at Urbana-Champaign 300.0x 98.9 98.88 0 99.98 0.22 GCF_003172975.1 1989 2110 2110 35 18 67 1 Streptococcus_sobrinus_homd_HMT_768 GCA_003172995.1 HMT-768 SL1 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus SL1 1 2198571 43.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/172/995/GCA_003172995.1_ASM317299v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA471712 1310 SAMN09214222 ASM317299v1 Complete Genome SPAdes v. 3.11.1 2018-05-16T15:16:13.676 missing dental plaque Illumina MiSeq University of Illinois at Urbana-Champaign 300.0x 99.98 98.88 0 99.99 0.13 GCF_003172995.1 2046 2167 2167 35 18 67 1 Streptococcus_sobrinus_homd_HMT_768 GCA_003176795.1 HMT-768 NIDR 6715-7 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus NIDR 6715-7 1 2145017 43.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/176/795/GCA_003176795.1_ASM317679v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA471712 1310 SAMN09232464 ASM317679v1 Complete Genome SPAdes v. 3.11.1 2018-05-21T15:08:03.574 missing Human dental plaque Illumina MiSeq University of Illinois at Urbana-Champaign 300.0x 98.92 98.88 0.37 99.98 0.1 GCF_003176795.1 1967 2084 2084 35 18 63 1 Streptococcus_sobrinus_homd_HMT_768 GCA_003176815.1 HMT-768 NIDR 6715-15 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus NIDR 6715-15 1 2144746 43.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/176/815/GCA_003176815.1_ASM317681v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA471712 1310 SAMN09232465 ASM317681v1 Complete Genome SPAdes v. 3.11.1 2018-05-21T15:08:03.594 missing Human dental plaque Illumina MiSeq University of Illinois at Urbana-Champaign 300.0x 98.92 98.88 0.37 99.98 0.11 GCF_003176815.1 1967 2084 2084 35 18 63 1 Streptococcus_sobrinus_homd_HMT_768 GCA_003182075.1 HMT-662 DSM 20470 Named Cultivated Nasal (Abundance: Medium) HMT-662 Finegoldia magna DSM 20470 59 2021781 31.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/182/075/GCA_003182075.1_ASM318207v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia;s__Finegoldia magna PRJNA456021 1260 SAMN09064769 ASM318207v1 Scaffold SPAdes v. 3.10.1 2018-05-04T04:30:18.613 missing missing Illumina HiSeq DOE Joint Genome Institute 695.0x 99.98 99.39 0.97 99.98 0.12 GCF_003182075.1 QGTH01 1845 1909 1909 29 4 30 1 Finegoldia_magna_homd_HMT_662 GCA_003182515.1 HMT-655 8486cho Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-655 Eubacterium limosum 8486cho 28 4366305 47.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/182/515/GCA_003182515.1_ASM318251v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__Eubacterium limosum PRJNA441676 1736 SAMN08777811 ASM318251v1 Scaffold SPAdes v. 3.10.1 2018-03-22T20:34:41.127 missing missing Illumina MiSeq DOE Joint Genome Institute 190.0x 99.99 99.3 0 100 1.21 GCF_003182515.1 QGUD01 4078 4244 4244 111 4 50 1 Eubacterium_limosum_homd_HMT_655 GCA_003184205.1 HMT-921 Cedars Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-921 Paenibacillus glucanolyticus Cedars 3 6720481 48.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/184/205/GCA_003184205.1_ASM318420v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus glucanolyticus PRJNA383291 1980674 SAMN06765501 ASM318420v1 Complete Genome SMRTPortal v. 14-Jan-2016 2017-04-18T23:48:04.140 USA: California , The Cedars, Alkaline pool submerged anode electrode PacBio National Institute for Material Science 200.0x 99.85 0.15 100 0.38 GCF_003184205.1 6220 6321 0 0 24 76 1 Paenibacillus_glucanolyticus_homd_HMT_921 GCA_003184385.1 HMT-641 10P129H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 10P129H1 1 2047595 37.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/184/385/GCA_003184385.1_ASM318438v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_J PRJNA473035 727 SAMN09258515 ASM318438v1 Complete Genome HGAP v. March-2018 2018-05-24T22:47:15.000 USA: Buffalo sputum PacBio Griffith University 393.5x 94.8 97.31 0 94.91 3.25 GCF_003184385.1 2234 2347 2347 40 19 53 1 Haemophilus_influenzae_homd_HMT_641 GCA_003184405.1 HMT-641 84P36H1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 84P36H1 1 2025527 38.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/184/405/GCA_003184405.1_ASM318440v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_H PRJNA473038 727 SAMN09258517 ASM318440v1 Complete Genome HGAP v. 1 2018-05-24T23:07:09.110 USA: Buffalo sputum PacBio Griffith University 380.0x 97.05 98.26 0 94.01 3.51 GCF_003184405.1 2313 2424 2424 35 20 56 0 Haemophilus_influenzae_homd_HMT_641 GCA_003193745.1 HMT-550 AR_0470 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus AR_0470 1 2963657 32.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/193/745/GCA_003193745.1_ASM319374v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA316321 1280 SAMN07291563 ASM319374v1 Complete Genome canu v. 1.4 2017-06-28T16:00:22.690 missing missing Pacbio; Illumina FDA/CDC 27.0x 97.81 99.4 0.22 100 0.3 GCF_003193745.1 2748 2960 2960 132 19 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_003194045.1 HMT-591 BQ11 Named Cultivated Pathogen (Abundance: Scarce) HMT-591 Corynebacterium diphtheriae BQ11 1 2557381 53.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/194/045/GCA_003194045.1_ASM319404v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae PRJNA473263 1717 SAMN09269643 ASM319404v1 Complete Genome HGAP v. 3.0 2018-05-27T22:01:03.877 Australia Pharyngeal swab PacBio The University of Queensland 96.0x 98.4 99.45 0.44 100 0.69 GCF_003194045.1 2388 2468 2468 10 15 54 1 Corynebacterium_diphtheriae_homd_HMT_591 GCA_003201715.1 HMT-795 DSM 15611 Named Cultivated Oral (Abundance: Medium) HMT-795 Hoylesella shahii DSM 15611 98 3511526 44.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/201/715/GCA_003201715.1_ASM320171v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella shahii PRJNA245696 1122991 SAMN02745169 ASM320171v1 Scaffold AllPaths v. r46652 2014-05-05T22:44:20.630 Japan Illumina HiSeq DOE Joint Genome Institute 620.0x 99.95 99.66 0 99.74 0.02 GCF_003201715.1 QJJX01 2811 2867 2867 10 2 43 1 Hoylesella_shahii_homd_HMT_795 GCA_003202245.1 HMT-072 2130 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 2130 76 3052429 59.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/202/245/GCA_003202245.1_ASM320224v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA399282 43770 SAMN07532617 ASM320224v1 Contig MIRA v. 2015-06; CLC NGS Cell v. 2015-06 2017-08-22T10:07:04.657 Brazil: Rio de Janeiro blood Illumina HiSeq Fundacao Oswaldo Cruz 148.0x 98.4 99.23 1.01 100 2.77 GCF_003202245.1 NRIL01 2873 2951 2951 9 3 65 1 Corynebacterium_striatum_homd_HMT_072 GCA_003202295.1 HMT-072 2296 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 2296 71 2861961 59.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/202/295/GCA_003202295.1_ASM320229v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA399337 43770 SAMN07533541 ASM320229v1 Contig a5 v. 2014-11 2017-08-22T10:57:44.983 Brazil: Rio de Janeiro Venous cateter Illumina HiSeq Fundacao Oswaldo Cruz 375.0x 98.61 99.67 0.57 100 0.23 GCF_003202295.1 NRIN01 2665 2734 2734 9 3 56 1 Corynebacterium_striatum_homd_HMT_072 GCA_003202355.1 HMT-072 2425 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 2425 48 2847990 59.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/202/355/GCA_003202355.1_ASM320235v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA399495 43770 SAMN07535082 ASM320235v1 Scaffold a5 miseq v. 2014-12 2017-08-22T11:52:16.060 Brazil: Rio de Janeiro blood Illumina HiSeq Fundacao Oswaldo Cruz 147.0x 98.58 99.67 0.66 99.99 0.1 GCF_003202355.1 NRIP01 2693 2763 2763 8 3 58 1 Corynebacterium_striatum_homd_HMT_072 GCA_003205835.1 HMT-663 SJTL3 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-663 Stenotrophomonas maltophilia SJTL3 1 4891004 66.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/205/835/GCA_003205835.1_ASM320583v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas riyadhensis PRJNA474584 40324 SAMN09355365 ASM320583v1 Complete Genome A5-miseq v. v20150522; CANU v. v1.4 2018-06-05T03:38:07.570 China:Shanghai wastewater Illumina MiSeq; PacBio Shanghai Jiaotong University 249.0x 92.34 100 1.04 100 0.54 GCF_003205835.1 4367 4499 4499 41 13 77 1 Stenotrophomonas_maltophilia_homd_HMT_663 GCA_003217445.1 HMT-120 AtHG25 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus AtHG25 42 2437823 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/217/445/GCA_003217445.1_ASM321744v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA334002 1938895 SAMN06161130 ASM321744v1 Scaffold SPAdes v. 3.10.1 2016-12-16T18:12:53.817 missing missing Illumina HiSeq DOE Joint Genome Institute 472.0x 99.62 0.76 99.99 0.8 GCF_003217445.1 QJSN01 2379 2524 2524 78 8 58 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_003226385.1 HMT-202 12230 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum 12230 55 2429502 26.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/226/385/GCA_003226385.1_ASM322638v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA474955 851 SAMN09377639 ASM322638v1 Contig Velvet v. MAY-2014 2018-06-06T17:24:12.616 USA: Buffalo clinical transtracheal isolate Illumina HiSeq University of Toronto 40.0x 92.33 100 0 100 0.09 GCF_003226385.1 QKOC01 2375 2447 2447 25 3 43 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_003226435.1 HMT-530 Asn12 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes Asn12 2 2484878 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/226/435/GCA_003226435.1_ASM322643v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474621 1747 SAMN09356182 ASM322643v1 Contig CLC Genomics Workbench v. 11 2018-06-05T08:56:11.870 United Kingdom Illumina MiSeq Seqomics Ltd. 95.0x 99.8 100 0 99.99 0.01 GCF_003226435.1 QKRC01 2377 2457 2457 22 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_003231475.1 HMT-755 HS0302 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius HS0302 30 2437080 39.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/231/475/GCA_003231475.1_ASM323147v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA400312 1304 SAMN07563134 ASM323147v1 Contig ABySS v. 2.0.2 2017-08-26T17:48:02.893 USA: Texas College Station Identified as lab contaminant that had potent inhibitory activity against human Illumina HiSeq Texas A&M 90.0x 95.17 99.96 0.68 100 0.23 GCF_003231475.1 NSIW01 2202 2327 2327 51 18 55 1 Streptococcus_salivarius_homd_HMT_755 GCA_003241455.1 HMT-342 S2_005_002_R2_33 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-342 Novosphingobium panipatense S2_005_002_R2_33 69 5286817 64.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/241/455/GCA_003241455.1_ASM324145v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium;s__Novosphingobium panipatense_A PRJNA376580 205844 SAMN07426533 ASM324145v1 Contig IDBA_UD v. 1.1.1 2017-07-30T12:24:06.606 USA: Pittsburgh, Pennsylvania hospital NICU surfaces and sink samples Illumina HiSeq None 2.0x 82.87 99.82 1.79 100 0.29 QFPX01 4754 4849 4849 34 1 59 1 Novosphingobium_panipatense_homd_HMT_342 GCA_003252645.1 HMT-762 C2000002669 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis C2000002669 22 2004096 42.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/645/GCA_003252645.1_ASM325264v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_B PRJNA454666 739 SAMN09011144 ASM325264v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.340 USA: Minnesota Penile lesion Illumina MiSeq Centers for Disease Control and Prevention 30.0x 95.34 99.89 0.23 100 0.07 GCF_003252645.1 QEPK01 1841 1970 1970 68 9 51 1 Aggregatibacter_segnis_homd_HMT_762 GCA_003252655.1 HMT-036 C2001002324 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 C2001002324 20 1882180 38.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/655/GCA_003252655.1_ASM325265v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA454666 726 SAMN09011143 ASM325265v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.320 USA: Minnesota sputum Illumina MiSeq Centers for Disease Control and Prevention 27.0x 93.86 99.49 0 100 0.04 GCF_003252655.1 QEPL01 1750 1861 1861 48 10 52 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_003252685.1 HMT-762 C2001002503 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis C2001002503 13 1918287 42.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/685/GCA_003252685.1_ASM325268v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_B PRJNA454666 739 SAMN09011142 ASM325268v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.303 USA: Minnesota sputum Illumina MiSeq Centers for Disease Control and Prevention 31.0x 95.24 99.89 0 100 0.01 GCF_003252685.1 QEPM01 1772 1955 1955 122 9 51 1 Aggregatibacter_segnis_homd_HMT_762 GCA_003252715.1 HMT-944 C2002001239 Named Cultivated Oral (Abundance: Medium) HMT-944 Haemophilus sputorum C2002001239 29 2158543 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/715/GCA_003252715.1_ASM325271v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A sputorum PRJNA454666 1078480 SAMN09011141 ASM325271v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.287 USA: Minnesota throat Illumina MiSeq Centers for Disease Control and Prevention 36.0x 97.11 99.81 0.23 100 0.06 GCF_003252715.1 QEPN01 2085 2171 2171 24 10 51 1 Haemophilus_sputorum_homd_HMT_944 GCA_003252725.1 HMT-718 C2004000280 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae C2004000280 32 1999882 39.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/725/GCA_003252725.1_ASM325272v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_L PRJNA454666 729 SAMN09011140 ASM325272v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.270 USA: Minnesota Toe Illumina MiSeq Centers for Disease Control and Prevention 64.0x 93.78 99.89 0.11 100 0.26 GCF_003252725.1 QEPO01 1896 1981 1981 23 10 51 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_003252775.1 HMT-718 C2008001710 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae C2008001710 51 2100038 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/775/GCA_003252775.1_ASM325277v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp001679485 PRJNA454666 729 SAMN09011132 ASM325277v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.140 USA: Minnesota sputum Illumina MiSeq Centers for Disease Control and Prevention 61.0x 93.34 99.89 0.55 100 1.32 GCF_003252775.1 QEPW01 2011 2101 2101 29 9 51 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_003252795.1 HMT-718 C2004002729 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae C2004002729 15 1898682 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/795/GCA_003252795.1_ASM325279v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_K PRJNA454666 729 SAMN09011138 ASM325279v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.237 USA: Minnesota sputum Illumina MiSeq Centers for Disease Control and Prevention 53.0x 94.5 99.66 0 100 0.05 GCF_003252795.1 QEPQ01 1800 1885 1885 24 9 51 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_003252805.1 HMT-426 C2008001782 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii C2008001782 16 2329796 42.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/805/GCA_003252805.1_ASM325280v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA454666 732 SAMN09011131 ASM325280v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.123 USA: Minnesota Bronchial wash Illumina MiSeq Centers for Disease Control and Prevention 33.0x 94.03 99.89 0.25 100 0.1 GCF_003252805.1 QEPX01 2090 2216 2216 63 10 52 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003252835.1 HMT-426 C2010020251 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii C2010020251 18 2450473 42.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/835/GCA_003252835.1_ASM325283v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA454666 732 SAMN09011126 ASM325283v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.043 USA: Minnesota Hip Illumina MiSeq Centers for Disease Control and Prevention 38.0x 94.03 99.66 0.23 100 0.01 GCF_003252835.1 QEQC01 2294 2421 2421 64 9 53 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003252855.1 HMT-944 C2015005473 Named Cultivated Oral (Abundance: Medium) HMT-944 Haemophilus sputorum C2015005473 26 1999520 39.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/855/GCA_003252855.1_ASM325285v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A sputorum PRJNA454666 1078480 SAMN09011122 ASM325285v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:03.977 USA: Minnesota blood Illumina MiSeq Centers for Disease Control and Prevention 34.0x 97.28 99.81 0 100 0 GCF_003252855.1 QEQG01 1883 1968 1968 24 10 50 1 Haemophilus_sputorum_homd_HMT_944 GCA_003252875.1 HMT-944 C2015005679 Named Cultivated Oral (Abundance: Medium) HMT-944 Haemophilus sputorum C2015005679 26 2001559 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/875/GCA_003252875.1_ASM325287v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A sputorum PRJNA454666 1078480 SAMN09011121 ASM325287v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:03.927 USA: Minnesota blood Illumina MiSeq Centers for Disease Control and Prevention 43.0x 97.27 99.81 0 100 0 GCF_003252875.1 QEQH01 1884 1969 1969 24 10 50 1 Haemophilus_sputorum_homd_HMT_944 GCA_003252885.1 HMT-718 C2004002727 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae C2004002727 23 2088855 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/885/GCA_003252885.1_ASM325288v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA454666 729 SAMN09011139 ASM325288v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.253 USA: Minnesota blood Illumina MiSeq Centers for Disease Control and Prevention 43.0x 95.91 99.89 0.09 100 0.4 GCF_003252885.1 QEPP01 1978 2067 2067 27 10 51 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_003252915.1 HMT-718 C2005004058 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae C2005004058 16 2079145 39.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/915/GCA_003252915.1_ASM325291v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AE PRJNA454666 729 SAMN09011137 ASM325291v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.220 USA: Minnesota wound Illumina MiSeq Centers for Disease Control and Prevention 42.0x 95.77 99.89 0 100 0.01 GCF_003252915.1 QEPR01 1968 2056 2056 28 9 50 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_003252925.1 HMT-945 C2006000788 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus C2006000788 15 2117430 40.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/925/GCA_003252925.1_ASM325292v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus PRJNA454666 735 SAMN09011136 ASM325292v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.203 USA: Minnesota Bronchial wash Illumina MiSeq Centers for Disease Control and Prevention 72.0x 95.64 99.36 0.3 99.99 0.18 GCF_003252925.1 QEPS01 1998 2085 2085 23 9 54 1 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_003252955.1 HMT-545 C2008000870 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus C2008000870 33 2268540 42.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/955/GCA_003252955.1_ASM325295v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA454666 732 SAMN09011134 ASM325295v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.173 USA: Minnesota blood Illumina MiSeq Centers for Disease Control and Prevention 34.0x 99.93 99.89 0.02 100 0.08 GCF_003252955.1 QEPU01 2105 2227 2227 61 8 52 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_003252965.1 HMT-545 C2008001229 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus C2008001229 33 2288398 42.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/965/GCA_003252965.1_ASM325296v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA454666 732 SAMN09011133 ASM325296v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.157 USA: Minnesota brain abscess Illumina MiSeq Centers for Disease Control and Prevention 51.0x 98.05 99.89 0.02 100 0.11 GCF_003252965.1 QEPV01 2127 2242 2242 53 9 52 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_003252995.1 HMT-426 C2008003249 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii C2008003249 18 2346261 42.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/995/GCA_003252995.1_ASM325299v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA454666 732 SAMN09011130 ASM325299v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.107 USA: Minnesota Sinus Illumina MiSeq Centers for Disease Control and Prevention 25.0x 94.03 99.66 0.48 100 1.19 GCF_003252995.1 QEPY01 2134 2257 2257 59 9 54 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003253005.1 HMT-718 C2008003258 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae C2008003258 21 1928811 39.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/253/005/GCA_003253005.1_ASM325300v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA454666 729 SAMN09011129 ASM325300v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.093 USA: Minnesota sputum Illumina MiSeq Centers for Disease Control and Prevention 43.0x 93.35 99.89 0 100 0 GCF_003253005.1 QEPZ01 1815 1905 1905 28 10 51 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_003253035.1 HMT-426 C2009017515 Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii C2009017515 35 2452137 42.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/253/035/GCA_003253035.1_ASM325303v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJNA454666 732 SAMN09011128 ASM325303v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.077 USA: Minnesota Right cheek Illumina MiSeq Centers for Disease Control and Prevention 32.0x 94.04 99.66 0.55 100 1.19 GCF_003253035.1 QEQA01 2268 2392 2392 59 9 55 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_003253055.1 HMT-718 C2009038101 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae C2009038101 25 1958906 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/253/055/GCA_003253055.1_ASM325305v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA454666 729 SAMN09011127 ASM325305v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.060 USA: Minnesota sputum Illumina MiSeq Centers for Disease Control and Prevention 45.0x 93.55 99.89 0.05 100 0.25 GCF_003253055.1 QEQB01 1864 1955 1955 29 10 51 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_003253075.1 HMT-945 C2010039593 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus C2010039593 41 2218651 40.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/253/075/GCA_003253075.1_ASM325307v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus_B PRJNA454666 735 SAMN09011125 ASM325307v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.027 USA: Minnesota sputum Illumina MiSeq Centers for Disease Control and Prevention 36.0x 95.51 99.43 0.15 100 0.13 GCF_003253075.1 QEQD01 2124 2218 2218 30 9 54 1 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_003253085.1 HMT-718 C2011020591 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae C2011020591 26 1940388 39.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/253/085/GCA_003253085.1_ASM325308v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJNA454666 729 SAMN09011124 ASM325308v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:04.010 USA: Minnesota sputum Illumina MiSeq Centers for Disease Control and Prevention 37.0x 93.37 99.89 0 100 0 GCF_003253085.1 QEQE01 1826 1917 1917 28 11 51 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_003253115.1 HMT-035 C2014016342 Named Cultivated Oral (Abundance: High) HMT-035 Haemophilus paraphrohaemolyticus C2014016342 27 1967999 40.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/253/115/GCA_003253115.1_ASM325311v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A paraphrohaemolyticus_A PRJNA454666 736 SAMN09011123 ASM325311v1 Contig SPAdes v. 3.7.0 2018-05-02T11:44:03.993 USA: Minnesota RML bronchus Illumina MiSeq Centers for Disease Control and Prevention 27.0x 94.93 99.66 0 100 0 GCF_003253115.1 QEQF01 1850 1938 1938 24 10 53 1 Haemophilus_paraphrohaemolyticus_homd_HMT_035 GCA_003253775.1 HMT-823 MRHRU-235-G Named Cultivated Pathogen (Abundance: Scarce) HMT-823 Mycobacterium leprae MRHRU-235-G 1 3187112 57.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/253/775/GCA_003253775.1_ASM325377v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium leprae PRJNA470766 1769 SAMN09104579 ASM325377v1 Complete Genome SPAdes v. V3.9.0 2018-05-10T06:15:04.886 India Slit Skin Illumina National JALMA Institute for Leprosy and Other Mycobacterial Diseases 1.0x 87.8 0 100 0.03 GCF_003253775.1 3882 3953 3953 21 3 46 1 Mycobacterium_leprae_homd_HMT_823 GCA_003254255.1 HMT-107 DSM 23576 Named Cultivated Oral (Abundance: Medium) HMT-107 Lachnoanaerobaculum umeaense DSM 23576 78 2705257 34.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/254/255/GCA_003254255.1_ASM325425v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum umeaense PRJNA439980 617123 SAMN08770186 ASM325425v1 Scaffold SPAdes v. 3.10.1 2018-03-21T23:40:32.336 missing missing Illumina HiSeq DOE Joint Genome Institute 460.0x 99.99 99.37 0 99.14 0.18 GCF_003254255.1 QKZH01 2496 2554 0 12 2 43 1 Lachnoanaerobaculum_umeaense_homd_HMT_107 GCA_003254295.1 HMT-857 DSM 1710 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-857 Rhodobacter capsulatus DSM 1710 24 3668822 66.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/254/295/GCA_003254295.1_ASM325429v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter;s__Rhodobacter capsulatus PRJNA262336 1061 SAMN05660778 ASM325429v1 Scaffold AllPaths v. r46652 2016-08-25T14:38:39.870 missing missing Illumina HiSeq DOE Joint Genome Institute 289.0x 98.79 0.56 100 0.44 GCF_003254295.1 QKZO01 3447 3532 3532 27 6 51 1 Rhodobacter_capsulatus_homd_HMT_857 GCA_003255875.1 HMT-608 CBA7106 Named Cultivated Oral (Abundance: Scarce) HMT-608 Limosilactobacillus fermentum CBA7106 1 2042277 51.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/255/875/GCA_003255875.1_ASM325587v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus fermentum PRJNA390215 1613 SAMN07224244 ASM325587v1 Complete Genome HGAP v. 3.0 2017-06-12T21:39:03.106 South Korea: Bundang adult feces PacBio Korea Food Research Institute 270.0x 99.27 99.18 0.82 99.91 0.08 GCF_003255875.1 1974 2077 2077 28 15 59 1 Limosilactobacillus_fermentum_homd_HMT_608 GCA_003258335.1 HMT-010 LH6 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-010 Acinetobacter radioresistens LH6 1 3089777 41.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/258/335/GCA_003258335.1_ASM325833v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens PRJNA475995 40216 SAMN09423269 ASM325833v1 Complete Genome Geneious v. May-2018 2018-06-13T16:57:18.200 USA Illumina MiSeq; PacBio University of Georgia 190.0x 98.45 100 0.27 100 0.04 GCF_003258335.1 2792 2902 2902 12 21 76 1 Acinetobacter_radioresistens_homd_HMT_010 GCA_003260325.1 HMT-872 GN02-872 Phylotype Uncultivated Oral (Abundance: Medium) HMT-872 Patescibacteria [C1 O1 F1 G1] bacterium HMT-872 GN02-872 11 1044027 25.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/260/325/GCA_003260325.1_ASM326032v1 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__BD1-5;f__UBA6164;g__GN02-872;s__GN02-872 sp003260325 PRJNA348708 1912928 SAMN05941941 ASM326032v1 Contig SPAdes v. 3.9; Geneious v. 10.0 2016-10-25T16:28:05.733 USA:Oak Ridge single-cell amplified by MDA; oral cavity saliva/biofilm Illumina MiSeq; Illumina HiSeq Oak Ridge National Laboratory 50.0x 80.34 0 90.45 0.84 MOLU01 1033 1065 1065 1 1 30 0 Patescibacteria__C1_O1_F1_G1_HMT_871_872 GCA_003260345.1 HMT-873 GN02-873 Phylotype Uncultivated Oral (Abundance: Scarce) HMT-873 Patescibacteria [C1 O1 F1 G2] bacterium HMT-873 GN02-873 6 949611 36.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/260/345/GCA_003260345.1_ASM326034v1 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__BD1-5;f__UBA2023;g__GN02-873;s__GN02-873 sp003260345 PRJNA348708 1914866 SAMN05945944 ASM326034v1 Contig SPAdes v. 3.9; Geneious v. 10 2016-10-27T05:34:05.216 USA:Oak Ridge single-cell amplified by MDA; oral cavity saliva/biofilm Illumina MiSeq Oak Ridge National Laboratory 500.0x 64.62 0.85 94.2 0.58 MORC01 1260 1306 1306 1 5 40 0 Patescibacteria__C1_O1_F1_G2__bacterium_HMT_873_homd_HMT_873 GCA_003260355.1 HMT-345 HOT-345 Phylotype Uncultivated Oral (Abundance: Medium) HMT-345 Absconditicoccaceae [G1] bacterium HMT-345 HOT-345 3 1144105 38.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/260/355/GCA_003260355.1_ASM326035v1 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp003260355 PRJNA352960 1540874 SAMN06040740 ASM326035v1 Contig SPAdes v. 3.9; Geneious v. 10 2016-11-18T14:37:04.853 USA:Oak Ridge single cell isolated by MDA; saliva/oral biofilm Illumina MiSeq; Illumina HiSeq Oak Ridge National Laboratory 500.0x 74.16 3.37 93.81 3.78 MPSQ01 2088 2130 2130 0 2 40 0 Absconditicoccaceae__G1__bacterium_HMT_345_homd_HMT_345 GCA_003260355.1 HMT-345 HOT-345 Phylotype Uncultivated Oral (Abundance: Medium) HMT-345 Absconditicoccaceae [G1] bacterium HMT-345 HOT-345 3 1144105 38.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/260/355/GCA_003260355.1_ASM326035v1 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp003260355 PRJNA352960 1540874 SAMN06040740 ASM326035v1 Contig SPAdes v. 3.9; Geneious v. 10 2016-11-18T14:37:04.853 USA:Oak Ridge single cell isolated by MDA; saliva/oral biofilm Illumina MiSeq; Illumina HiSeq Oak Ridge National Laboratory 500.0x 74.16 3.37 93.81 3.78 MPSQ01 2088 2130 2130 0 2 40 0 Absconditicoccaceae__G1_HMT_345_874_875 GCA_003263915.2 HMT-813 KPL1914 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL1914 1 1890416 39.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/263/915/GCA_003263915.2_ASM326391v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN06621607 ASM326391v2 Chromosome HGAP v. 3.0 2017-03-20T12:54:02.960 USA: Cambridge, MA nose PacBio RSII Forsyth Institute 208.0x 97.7 99.46 2.45 99.27 0.33 GCF_003263915.2 1770 1872 1872 36 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_003263965.1 HMT-813 KPL1939_CDC4792-99 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL1939_CDC4792-99 47 1893917 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/263/965/GCA_003263965.1_ASM326396v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379966 29394 SAMN06624379 ASM326396v1 Scaffold Velvet v. DECEMBER-2015 2017-03-21T13:48:04.370 USA: AZ nasopharyngeal Illumina Forsyth Institute 92.0x 97.62 98.85 1.9 99.75 0.33 GCF_003263965.1 NAQP01 1734 1844 1844 47 6 56 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_003263975.1 HMT-813 KPL1938_CDC4791-99 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL1938_CDC4791-99 64 1873869 39.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/263/975/GCA_003263975.1_ASM326397v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379966 29394 SAMN06624378 ASM326397v1 Scaffold Velvet v. DECEMBER-2015 2017-03-21T13:48:04.330 USA: AZ nasopharyngeal Illumina Forsyth Institute 61.0x 97.46 99.21 1.9 98.79 0.45 GCF_003263975.1 NAQQ01 1692 1810 1810 58 5 54 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_003264005.1 HMT-813 KPL1937_CDC4199-99 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL1937_CDC4199-99 65 1976602 39.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/264/005/GCA_003264005.1_ASM326400v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379966 29394 SAMN06624377 ASM326400v1 Scaffold Velvet v. DECEMBER-2015 2017-03-21T13:48:04.293 USA: GA blood Illumina Forsyth Institute 107.0x 97.51 98.37 1.9 97.94 0.3 GCF_003264005.1 NAQR01 1795 1920 1920 61 7 56 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_003264045.1 HMT-813 KPL1933_CDC4545-98 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL1933_CDC4545-98 19 1861299 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/264/045/GCA_003264045.1_ASM326404v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379966 29394 SAMN06624375 ASM326404v1 Scaffold Velvet v. DECEMBER-2015 2017-03-21T13:48:04.197 USA: AZ nasopharyngeal Illumina Forsyth Institute 128.0x 97.51 98.91 1.9 99.04 0.31 GCF_003264045.1 NAQT01 1703 1800 1800 39 4 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_003264065.1 HMT-813 KPL1932_CDC4420-98 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL1932_CDC4420-98 69 1934436 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/264/065/GCA_003264065.1_ASM326406v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379966 29394 SAMN06624374 ASM326406v1 Scaffold Velvet v. DECEMBER-2015 2017-03-21T13:48:04.157 USA: TN blood Illumina Forsyth Institute 63.0x 97.5 99.18 2.45 99.02 0.45 GCF_003264065.1 NAQU01 1776 1897 1897 61 4 55 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_003264085.1 HMT-813 KPL1931_CDC4294-98 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL1931_CDC4294-98 82 2014679 39.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/264/085/GCA_003264085.1_ASM326408v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379966 29394 SAMN06624373 ASM326408v1 Scaffold Velvet v. DECEMBER-2015 2017-03-21T13:48:04.087 USA: SC blood Illumina Forsyth Institute 73.0x 97.66 99.46 2.55 99.04 0.89 GCF_003264085.1 NAQV01 1914 2031 2031 56 5 55 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_003264135.1 HMT-813 KPL1930_CDC2949-98 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL1930_CDC2949-98 92 1886398 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/264/135/GCA_003264135.1_ASM326413v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379966 29394 SAMN06624372 ASM326413v1 Scaffold Velvet v. DECEMBER-2015 2017-03-21T13:48:04.020 USA: AZ nasopharyngeal Illumina Forsyth Institute 60.0x 97.63 99.46 2.45 98.95 0.3 GCF_003264135.1 NAQW01 1692 1798 1798 46 6 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_003264145.1 HMT-813 KPL1922_CDC39-95 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL1922_CDC39-95 75 1859258 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/264/145/GCA_003264145.1_ASM326414v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379966 29394 SAMN06624371 ASM326414v1 Scaffold Velvet v. DECEMBER-2015 2017-03-21T13:48:03.923 Canada sinus Illumina Forsyth Institute 62.0x 97.68 99.18 1.9 99.45 0.66 GCF_003264145.1 NAQX01 1708 1814 1814 47 6 52 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_003265025.1 HMT-643 KCOM 2734 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia KCOM 2734 2 2949063 43.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/265/025/GCA_003265025.1_ASM326502v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA416401 28131 SAMN07955960 ASM326502v1 Complete Genome RS HGAP v. 3.0 2017-10-30T23:08:04.837 Korea: Gwangju Subgingival dental plaque PacBio Korean Collection for Oral Microbiology 380.8x 96.31 98.99 0 99.98 0.1 GCF_003265025.1 2537 2609 2609 10 12 49 1 Prevotella_intermedia_homd_HMT_643 GCA_003269195.1 HMT-714 DSM 18710 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens DSM 18710 80 3053674 37.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/269/195/GCA_003269195.1_ASM326919v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA331400 60133 SAMN05444284 ASM326919v1 Scaffold SPAdes v. 3.6.2 2016-07-26T23:01:32.713 missing missing Illumina HiSeq DOE Joint Genome Institute 188.0x 99.94 99.66 0.41 99.96 0.41 GCF_003269195.1 QLTQ01 2505 2564 2564 8 5 45 1 Prevotella_pallens_homd_HMT_714 GCA_003284685.1 HMT-644 LAU_SINT Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius LAU_SINT 31 1949554 37.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/284/685/GCA_003284685.1_ASM328468v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA476485 1338 SAMN09435561 ASM328468v1 Contig SPAdes v. 3.9 2018-06-18T05:00:03.850 Lebanon Illumina MiSeq Lebanese American University 30.0x 98.34 99.88 0 99.99 0.23 GCF_003284685.1 QLNG01 1859 1948 1948 34 5 49 1 Streptococcus_intermedius_homd_HMT_644 GCA_003285265.1 HMT-104 RSP-02 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-104 Paracoccus yeei RSP-02 1 3592357 67.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/285/265/GCA_003285265.1_ASM328526v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus yeei PRJNA476696 1499308 SAMN09453177 ASM328526v1 Complete Genome CLC denovo v. 9.0.1 2018-06-19T07:44:05.983 India: Sirpur Kagaznagar cellulosic waste soil Illumina NextSeq 500 Bioserve Biotechnologies 200.0x 91.83 0 96.03 1.8 GCF_003285265.1 4181 4270 4270 23 9 56 1 Paracoccus_yeei_homd_HMT_104 GCA_003293675.1 HMT-867 UGent 06.41 Named Cultivated Vaginal (Abundance: High) HMT-867 Gardnerella leopoldii UGent 06.41 1 1563545 42.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/293/675/GCA_003293675.1_ASM329367v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium leopoldii PRJNA474758 2792978 SAMN09373173 ASM329367v1 Chromosome SPAdes v. 3.11.1 2018-06-05T19:32:05.010 Belgium: Ghent vagina Illumina MiSeq Ghent University 785.0x 100 0 99.81 0.39 GCF_003293675.1 1187 1253 1253 14 6 45 1 Gardnerella_leopoldii_homd_HMT_867 GCA_003294055.1 HMT-571 BE51 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-571 Burkholderia cepacia BE51 182 8933938 66.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/294/055/GCA_003294055.1_ASM329405v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia cepacia PRJNA477327 2234132 SAMN09464887 ASM329405v1 Contig SPAdes v. v.3.11 2018-06-21T10:45:03.863 France Illumina HiSeq; Illumina MiSeq Reims university 104.1x 100 0.03 100 0.22 GCF_003294055.1 QMFZ01 7959 8104 8104 62 8 74 1 Burkholderia_cepacia_homd_HMT_571 GCA_003312465.1 HMT-961 APC918/95b Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-961 Faecalibacterium prausnitzii APC918/95b 1 2970937 56.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/312/465/GCA_003312465.1_ASM331246v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii PRJNA432550 853 SAMN08494074 ASM331246v1 Complete Genome SPAdes v. 3.10.0 2018-02-08T08:08:03.670 Ireland: Cork Illumina HiSeq University College Cork 349.0x 96.8 100 0 99.56 0.28 GCF_003312465.1 2694 2819 2819 43 18 63 1 Faecalibacterium_prausnitzii_homd_HMT_961 GCA_003315235.1 HMT-621 DSM 9188 Named Cultivated Pathogen (Abundance: Scarce) HMT-621 Neisseria gonorrhoeae DSM 9188 72 2142774 52.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/315/235/GCA_003315235.1_ASM331523v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria gonorrhoeae PRJNA463403 485 SAMN09074774 ASM331523v1 Scaffold SPAdes v. 3.10.1 2018-05-04T15:21:35.370 missing missing Illumina HiSeq DOE Joint Genome Institute 597.0x 99.99 99.82 0.21 99.99 0.09 GCF_003315235.1 QNRU01 2092 2166 2166 20 3 50 1 Neisseria_gonorrhoeae_homd_HMT_621 GCA_003324185.1 HMT-961 ATCC 27768 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-961 Faecalibacterium prausnitzii ATCC 27768 76 3031166 56.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/324/185/GCA_003324185.1_ASM332418v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii PRJNA432550 853 SAMN08707943 ASM332418v1 Contig SPAdes v. 3.10.0 2018-03-14T06:49:08.943 Not collected Illumina HiSeq University College Cork 300.0x 99.98 100 0 99.85 0.42 GCF_003324185.1 PXUP01 2772 2880 2880 44 3 60 1 Faecalibacterium_prausnitzii_homd_HMT_961 GCA_003339975.1 HMT-654 DSM 2243 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-654 Eggerthella lenta DSM 2243 70 3596141 64.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/339/975/GCA_003339975.1_ASM333997v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella;s__Eggerthella lenta PRJNA412637 84112 SAMN08365978 ASM333997v1 Scaffold SPAdes v. 3.11.21 2018-01-15T16:07:03.683 France: Paris, Ile-de-France Rectal Tumor Illumina HiSeq UCSF 385.0x 99.99 100 0 100 0.23 GCF_003339975.1 PPUA01 3092 3161 3161 13 3 52 1 Eggerthella_lenta_homd_HMT_654 GCA_003340105.1 HMT-654 ATCC 25559 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-654 Eggerthella lenta ATCC 25559 75 3596161 64.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/340/105/GCA_003340105.1_ASM334010v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella;s__Eggerthella lenta PRJNA412637 84112 SAMN08365971 ASM334010v1 Scaffold SPAdes v. 3.11.14 2018-01-15T16:07:03.583 France: Paris, Ile-de-France Rectal Tumor Illumina HiSeq UCSF 323.0x 99.99 100 0 99.99 0.26 GCF_003340105.1 PPUH01 3095 3164 3164 13 3 52 1 Eggerthella_lenta_homd_HMT_654 GCA_003342735.1 HMT-550 E16SA093 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus E16SA093 1 2785564 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/342/735/GCA_003342735.1_ASM334273v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA481439 1280 SAMN09668080 ASM334273v1 Complete Genome HGAP v. 3 2018-07-17T05:12:04.946 South Korea blood PacBio Yonsei University College of medicine 684.0x 98.95 99.34 0.08 100 0.18 GCF_003342735.1 2563 2755 2755 112 19 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_003344065.1 HMT-076 YZ-1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri YZ-1 18 2659581 32.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/344/065/GCA_003344065.1_ASM334406v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA473233 1292 SAMN09269293 ASM334406v1 Scaffold SOAPdenovo v. July-2013 2018-05-27T03:11:05.180 China: Caka salt lake, Qinghai high salinity PacBio Dalian university of technology 20.0x 96.03 99.73 0.75 100 1.26 GCF_003344065.1 QHJX01 2572 2695 2695 55 8 59 1 Staphylococcus_warneri_homd_HMT_076 GCA_003349825.1 HMT-024 DSM 15344 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-024 Schlegelella thermodepolymerans DSM 15344 28 3835611 70.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/349/825/GCA_003349825.1_ASM334982v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Caldimonas;s__Caldimonas thermodepolymerans PRJNA456034 215580 SAMN09064560 ASM334982v1 Scaffold SPAdes v. 3.10.1 2018-05-04T04:20:25.346 Germany missing Illumina HiSeq DOE Joint Genome Institute 240.0x 99.99 99.84 0.47 100 0.01 GCF_003349825.1 QQAP01 3575 3650 3650 16 3 55 1 Schlegelella_thermodepolymerans_homd_HMT_024 GCA_003351405.1 HMT-851 M19345 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19345 1 1916320 38.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/405/GCA_003351405.1_ASM335140v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_N PRJNA428178 726 SAMN09704954 ASM335140v1 Complete Genome HGAP v. 3 2018-07-23T15:50:10.010 not applicable not collected PacBio Centers for Disease Control and Prevention 130.0x 95.36 99.66 0 100 0.22 GCF_003351405.1 1761 1868 1868 28 19 59 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003351425.1 HMT-641 M21384 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae M21384 1 1817261 38.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/425/GCA_003351425.1_ASM335142v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJNA428178 727 SAMN09704916 ASM335142v1 Complete Genome HGAP v. 3 2018-07-23T15:50:09.440 not applicable not collected PacBio Centers for Disease Control and Prevention 109.2x 95.14 99.66 0.36 100 0.03 GCF_003351425.1 1682 1791 1791 32 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_003351445.1 HMT-641 M21460 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae M21460 1 1860196 38.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/445/GCA_003351445.1_ASM335144v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA428178 727 SAMN09704917 ASM335144v1 Complete Genome HGAP v. 3 2018-07-23T15:50:09.453 not applicable not collected PacBio Centers for Disease Control and Prevention 128.2x 98.1 99.67 0 100 0 GCF_003351445.1 1758 1870 1870 33 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_003351465.1 HMT-641 M17648 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae M17648 1 1816295 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/465/GCA_003351465.1_ASM335146v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA428178 727 SAMN09704911 ASM335146v1 Complete Genome HGAP v. 3 2018-07-23T15:50:09.363 not applicable not collected PacBio Centers for Disease Control and Prevention 129.6x 97.37 99.67 0 100 0.05 GCF_003351465.1 1682 1793 1793 32 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_003351505.1 HMT-535 M14951 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius M14951 1 2008126 38.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/505/GCA_003351505.1_ASM335150v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA428178 727 SAMN09704904 ASM335150v1 Chromosome HGAP v. 3 2018-07-23T15:50:09.253 not applicable not collected PacBio Centers for Disease Control and Prevention 124.2x 96.99 99.67 0 99.98 0.05 GCF_003351505.1 1987 2108 2108 44 19 57 1 Haemophilus_aegyptius_homd_HMT_535 GCA_003351545.1 HMT-598 M15911 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata M15911 1 2397276 53.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/545/GCA_003351545.1_ASM335154v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA428178 495 SAMN09704973 ASM335154v1 Complete Genome HGAP v. 3 2018-07-23T15:50:10.330 not applicable not collected PacBio Centers for Disease Control and Prevention 95.1x 99.99 99.9 0.23 99.99 0 GCF_003351545.1 2226 2312 2312 12 12 61 1 Neisseria_elongata_homd_HMT_598 GCA_003351565.1 HMT-649 M17106 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M17106 1 2200224 52.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/565/GCA_003351565.1_ASM335156v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704838 ASM335156v1 Complete Genome HGAP v. 3 2018-07-23T15:50:08.196 not applicable not collected PacBio Centers for Disease Control and Prevention 91.5x 97.23 99.92 0 100 0.05 GCF_003351565.1 2084 2189 2189 31 12 61 1 Neisseria_lactamica_homd_HMT_649 GCA_003351585.1 HMT-641 M25588 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae M25588 1 1848871 38.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/585/GCA_003351585.1_ASM335158v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA428178 727 SAMN09704928 ASM335158v1 Complete Genome HGAP v. 3 2018-07-23T15:50:09.626 not applicable not collected PacBio Centers for Disease Control and Prevention 85.9x 97.42 99.67 0 100 0.04 GCF_003351585.1 1763 1875 1875 33 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_003351605.1 HMT-641 M12125 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae M12125 1 1804746 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/605/GCA_003351605.1_ASM335160v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA428178 727 SAMN09704892 ASM335160v1 Complete Genome HGAP v. 3 2018-07-23T15:50:09.003 not applicable not collected PacBio Centers for Disease Control and Prevention 169.8x 97.36 99.67 0 100 0.04 GCF_003351605.1 1669 1779 1779 31 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_003351625.1 HMT-851 M28486 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M28486 1 1822569 38.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/625/GCA_003351625.1_ASM335162v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_N PRJNA428178 726 SAMN09704968 ASM335162v1 Complete Genome HGAP v. 3 2018-07-23T15:50:10.253 not applicable not collected PacBio Centers for Disease Control and Prevention 136.7x 95.38 99.66 0 100 0 GCF_003351625.1 1675 1781 1781 28 19 58 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003351665.1 HMT-101 M18660 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava M18660 1 2321871 48.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/665/GCA_003351665.1_ASM335166v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava_A PRJNA428178 28449 SAMN09704641 ASM335166v1 Complete Genome HGAP v. 3 2018-07-23T15:50:04.963 not applicable not collected PacBio Centers for Disease Control and Prevention 107.0x 94.79 99.94 0.23 100 0.16 GCF_003351665.1 2120 2209 2209 17 12 59 1 Neisseria_perflava_homd_HMT_101 GCA_003351685.1 HMT-598 M15910 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata M15910 1 2534634 53.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/685/GCA_003351685.1_ASM335168v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA428178 495 SAMN09704972 ASM335168v1 Complete Genome HGAP v. 3 2018-07-23T15:50:10.313 not applicable not collected PacBio Centers for Disease Control and Prevention 63.4x 96.66 99.89 0 100 0.01 GCF_003351685.1 2431 2546 2546 41 12 61 1 Neisseria_elongata_homd_HMT_598 GCA_003351705.1 HMT-734 M26365 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae M26365 1 2169584 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/705/GCA_003351705.1_ASM335170v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA428178 1313 SAMN09704657 ASM335170v1 Complete Genome HGAP v. 3 2018-07-23T15:50:05.256 not applicable not collected PacBio Centers for Disease Control and Prevention 114.6x 98.74 99.6 0.37 100 0.38 GCF_003351705.1 2163 2311 2311 77 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_003351945.1 HMT-928 6198 Named** Cultivated Oral (Abundance: Scarce) HMT-928 Gemella massiliensis 6198 1 1797925 30.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/351/945/GCA_003351945.1_ASM335194v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella massiliensis PRJNA394796 2040624 SAMN07360775 ASM335194v1 Complete Genome other v. 4.0 2017-07-18T02:47:04.483 South Korea: Chungbuk Pleural fluid PacBio; Illumina Korea National Institute of Health, Korea Centers for Disease Control and Prevention 522.0x 98.28 0.29 100 0.85 GCF_003351945.1 1651 1728 1728 23 12 41 1 Gemella_massiliensis_homd_HMT_928 GCA_003352345.1 HMT-641 M25267 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae M25267 1 1914782 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/352/345/GCA_003352345.1_ASM335234v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJNA428178 727 SAMN09704927 ASM335234v1 Complete Genome HGAP v. 3 2018-07-23T15:50:09.610 not applicable not collected PacBio Centers for Disease Control and Prevention 174.9x 95.27 99.66 0.23 100 0.05 GCF_003352345.1 1807 1915 1915 30 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_003352365.1 HMT-641 M13034 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae M13034 1 1887933 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/352/365/GCA_003352365.1_ASM335236v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJNA428178 727 SAMN09704896 ASM335236v1 Complete Genome HGAP v. 3 2018-07-23T15:50:09.106 not applicable not collected PacBio Centers for Disease Control and Prevention 132.1x 95.25 99.66 0.23 100 0.04 GCF_003352365.1 1774 1881 1881 30 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_003352385.1 HMT-851 M19346 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19346 1 1973061 38.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/352/385/GCA_003352385.1_ASM335238v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_I PRJNA428178 726 SAMN09704955 ASM335238v1 Complete Genome HGAP v. 3 2018-07-23T15:50:10.026 not applicable not collected PacBio Centers for Disease Control and Prevention 126.1x 95.07 99.66 0 100 0.04 GCF_003352385.1 1817 1923 1923 28 19 58 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003352405.1 HMT-641 M15895 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae M15895 1 1919901 38.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/352/405/GCA_003352405.1_ASM335240v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJNA428178 727 SAMN09704905 ASM335240v1 Complete Genome HGAP v. 3 2018-07-23T15:50:09.270 not applicable not collected PacBio Centers for Disease Control and Prevention 113.9x 95.19 99.66 0.23 100 0.06 GCF_003352405.1 1828 1938 1938 33 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_003353455.1 HMT-749 GG Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-749 Lacticaseibacillus rhamnosus GG 1 3010116 46.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/353/455/GCA_003353455.1_ASM335345v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus PRJNA481623 568703 SAMN09685158 ASM335345v1 Complete Genome other v. Sep-2009 2018-07-18T02:01:02.666 South Korea: Cheongju feces Illumina HiSeq Chungbuk National University 553.7x 97.57 99.46 0 99.95 0.19 GCF_003353455.1 2819 2923 2923 31 15 57 1 Lacticaseibacillus_rhamnosus_homd_HMT_749 GCA_003354665.1 HMT-550 165 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 165 1 2892907 32.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/354/665/GCA_003354665.1_ASM335466v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA393749 1280 SAMN07340906 ASM335466v1 Complete Genome HGAP v. 2.2.0 2017-07-10T23:57:04.973 Germany blood PacBio; Illumina HiSeq Icahn School of Medicine 42.0x 99.92 99.51 0.11 100 0.14 GCF_003354665.1 2672 2871 2871 117 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_003354825.1 HMT-734 SPN XDR SMC1710-32 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SPN XDR SMC1710-32 1 2057144 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/354/825/GCA_003354825.1_ASM335482v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA428885 1313 SAMN08323709 ASM335482v1 Complete Genome GS De Novo Assembler v. JAN-2017 2018-01-07T20:55:04.613 South Korea: Seoul blood PacBio Asia Pacific Foundation for Infectious Diseases 702.9x 98.23 99.29 0.26 99.99 0.36 GCF_003354825.1 2075 2221 2221 75 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_003355195.1 HMT-737 M18661 Named Cultivated Oral (Abundance: Scarce) HMT-737 Neisseria polysaccharea M18661 1 2024930 52.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/355/195/GCA_003355195.1_ASM335519v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria polysaccharea PRJNA428178 489 SAMN09704642 ASM335519v1 Complete Genome HGAP v. 3 2018-07-23T15:50:04.983 not applicable not collected PacBio Centers for Disease Control and Prevention 123.0x 99.97 99.92 0 100 0.01 GCF_003355195.1 1930 2020 2020 17 12 60 1 Neisseria_polysaccharea_homd_HMT_737 GCA_003355255.1 HMT-669 M21717 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M21717 1 2188300 51.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/355/255/GCA_003355255.1_ASM335525v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA428178 487 SAMN09704687 ASM335525v1 Complete Genome HGAP v. 3 2018-07-23T15:50:05.730 not applicable not collected PacBio Centers for Disease Control and Prevention 61.6x 97.33 99.83 0.21 100 0 GCF_003355255.1 2027 2118 2118 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_003355275.1 HMT-669 M26263 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M26263 1 2264367 51.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/355/275/GCA_003355275.1_ASM335527v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA428178 487 SAMN09704706 ASM335527v1 Complete Genome HGAP v. 3 2018-07-23T15:50:06.070 not applicable not collected PacBio Centers for Disease Control and Prevention 110.4x 97.34 99.83 0.21 100 0 GCF_003355275.1 2122 2213 2213 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_003355295.1 HMT-669 M22814 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22814 1 2190201 51.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/355/295/GCA_003355295.1_ASM335529v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA428178 487 SAMN09704698 ASM335529v1 Complete Genome HGAP v. 3 2018-07-23T15:50:05.937 not applicable not collected PacBio Centers for Disease Control and Prevention 109.9x 97.42 99.75 0.19 99.98 0.01 GCF_003355295.1 2064 2182 2182 45 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_003355315.1 HMT-669 M23347 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M23347 1 2291778 51.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/355/315/GCA_003355315.1_ASM335531v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA428178 487 SAMN09704702 ASM335531v1 Complete Genome HGAP v. 3 2018-07-23T15:50:05.996 not applicable not collected PacBio Centers for Disease Control and Prevention 230.0x 97.31 99.62 0.31 100 0.01 GCF_003355315.1 2124 2242 2242 48 12 57 1 Neisseria_meningitidis_homd_HMT_669 GCA_003355335.1 HMT-669 M21374 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M21374 1 2207023 51.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/355/335/GCA_003355335.1_ASM335533v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA428178 487 SAMN09704682 ASM335533v1 Complete Genome HGAP v. 3 2018-07-23T15:50:05.650 not applicable not collected PacBio Centers for Disease Control and Prevention 113.0x 97.32 99.83 0.21 100 0 GCF_003355335.1 2061 2152 2152 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_003355395.1 HMT-669 M22425 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M22425 1 2239545 51.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/355/395/GCA_003355395.1_ASM335539v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA428178 487 SAMN09704694 ASM335539v1 Complete Genome HGAP v. 3 2018-07-23T15:50:05.873 not applicable not collected PacBio Centers for Disease Control and Prevention 111.6x 97.37 99.75 0.19 100 0 GCF_003355395.1 2100 2195 2195 20 12 62 1 Neisseria_meningitidis_homd_HMT_669 GCA_003355435.1 HMT-669 M18727 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis M18727 1 2280611 51.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/355/435/GCA_003355435.1_ASM335543v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA428178 487 SAMN09704670 ASM335543v1 Complete Genome HGAP v. 3 2018-07-23T15:50:05.470 not applicable not collected PacBio Centers for Disease Control and Prevention 109.6x 97.33 99.75 0.19 100 0.02 GCF_003355435.1 2119 2212 2212 21 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_003367335.1 HMT-692 HGMS2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-692 Mycolicibacterium neoaurum HGMS2 1 5421383 66.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/367/335/GCA_003367335.1_ASM336733v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium neoaurum_A PRJNA483955 1795 SAMN09754462 ASM336733v1 Complete Genome other v. SMRT V2.3.0 2018-08-01T11:57:03.603 China: Yichen, Hubei soil Illumina HiSeq; PacBio RSII Hubei University of Technology 100.0x 92.87 99.62 1.44 100 0.01 GCF_003367335.1 5100 5185 5185 26 6 52 1 Mycolicibacterium_neoaurum_homd_HMT_692 GCA_003367495.1 HMT-614 NRRL NRS-350 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-614 Lysinibacillus fusiformis NRRL NRS-350 82 4788243 37.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/367/495/GCA_003367495.1_ASM336749v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus;s__Lysinibacillus fusiformis PRJNA437719 28031 SAMN08683513 ASM336749v1 Contig CLC NGS Cell v. 11.0 2018-03-10T16:21:02.970 USA: Washington DC soil Illumina MiSeq NCAUR-ARS-USDA 75.0x 99.99 99.34 0.33 100 0.28 GCF_003367495.1 PXXY01 4732 4909 4909 91 12 73 1 Lysinibacillus_fusiformis_homd_HMT_614 GCA_003369875.1 HMT-846 W11 Named Cultivated Vaginal (Abundance: High) HMT-846 Gardnerella piotii W11 7 1566657 42.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/369/875/GCA_003369875.1_ASM336987v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium piotii PRJNA265103 2702 SAMN03145604 ASM336987v1 Contig Newbler v. 2.3 2014-10-28T13:48:33.097 Canada: Winnipeg vaginal swab sample 454 University of Saskatchewan 15.0x 89.7 100 0 100 0.16 GCF_003369875.1 LGOX01 1197 1259 1259 14 2 45 1 Gardnerella_piotii_homd_HMT_846 GCA_003369895.1 HMT-846 N101 Named Cultivated Vaginal (Abundance: High) HMT-846 Gardnerella piotii N101 7 1542981 42.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/369/895/GCA_003369895.1_ASM336989v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium sp947252975 PRJNA265097 2702 SAMN03145579 ASM336989v1 Contig Newbler v. 2.3 2014-10-28T13:39:48.810 Kenya: Nairobi vaginal swab sample 454 University of Saskatchewan 15.0x 89.6 100 0.91 100 0.14 GCF_003369895.1 LGOZ01 1173 1236 1236 14 3 45 1 Gardnerella_piotii_homd_HMT_846 GCA_003369935.1 HMT-846 N153 Named Cultivated Vaginal (Abundance: High) HMT-846 Gardnerella piotii N153 6 1541756 42.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/369/935/GCA_003369935.1_ASM336993v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium sp947252975 PRJNA265102 2702 SAMN03145603 ASM336993v1 Contig Newbler v. 2.3 2014-10-28T13:45:33.217 Kenya: Nairobi vaginal swab sample 454 University of Saskatchewan 15.0x 89.6 99.72 0 99.98 0.25 GCF_003369935.1 LGOY01 1206 1269 1269 14 3 45 1 Gardnerella_piotii_homd_HMT_846 GCA_003369965.1 HMT-846 N95 Named Cultivated Vaginal (Abundance: High) HMT-846 Gardnerella piotii N95 7 1522480 42.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/369/965/GCA_003369965.1_ASM336996v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium piotii PRJNA265092 2702 SAMN03145504 ASM336996v1 Contig Newbler v. 2.3 2014-10-28T13:20:33.203 Kenya: Nairobi vaginal swab sample 454 University of Saskatchewan 15.0x 89.59 100 0 99.99 0.23 GCF_003369965.1 LGPA01 1179 1243 1243 14 4 45 1 Gardnerella_piotii_homd_HMT_846 GCA_003384195.1 HMT-530 P15-180 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-180 6 2537015 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/195/GCA_003384195.1_ASM338419v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07656234 ASM338419v1 Contig Geneious-Geneiouss own assembler v. 8.1.8 2017-09-15T17:00:03.537 USA: Seattle tissue right shoulder collar membrame Illumina University of Washington 60.2x 99.55 100 0 100 0.3 GCF_003384195.1 NXAS01 2343 2419 2419 24 3 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384225.1 HMT-530 P15-178 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-178 5 2536713 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/225/GCA_003384225.1_ASM338422v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07656239 ASM338422v1 Contig Geneious-Geneiouss own assembler v. 8.1.8 2017-09-15T17:06:05.280 USA: Seattle tissue right Shoulder glenoid membrane Illumina University of Washington 79.9x 99.55 100 0 100 0.3 GCF_003384225.1 NXAT01 2342 2418 2418 24 3 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384255.1 HMT-530 M13605 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes M13605 6 2535330 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/255/GCA_003384255.1_ASM338425v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07656295 ASM338425v1 Contig Geneious-Geneiouss own assembler v. 8.1.8 2017-09-15T17:52:03.113 USA: Seattle tissue right humeral membrane Illumina University of Washington 49.4x 99.55 100 0 100 0.29 GCF_003384255.1 NXAW01 2343 2419 2419 24 3 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384285.1 HMT-530 P15-186 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-186 5 2479017 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/285/GCA_003384285.1_ASM338428v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07656251 ASM338428v1 Contig Geneious-Geneiouss own assembler v. 8.1.8 2017-09-15T17:29:03.103 USA: Seattle wound humeral stem explant Illumina University of Washington 100.9x 99.96 99.43 0.03 100 0.11 GCF_003384285.1 NXAU01 2297 2371 2371 23 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_003384415.1 HMT-530 T20574 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T20574 4 2480333 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/415/GCA_003384415.1_ASM338441v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07711248 ASM338441v1 Contig Geneious v. 8.1.8 2017-09-27T17:14:03.593 USA: Seattle Wound Right Shoulder Superficial Skin Illumina University of Washington 35.7x 99.64 100 0 99.99 0.03 GCF_003384415.1 PCNK01 2312 2385 2385 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384445.1 HMT-530 T20670 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T20670 4 2480132 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/445/GCA_003384445.1_ASM338444v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07711249 ASM338444v1 Contig Geneious v. 8.1.8 2017-09-27T17:19:03.223 USA: Seattle Tissue Left Shoulder glenoid membrane Illumina University of Washington 49.5x 99.64 100 0 99.99 0.03 GCF_003384445.1 PCNL01 2309 2382 2382 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384465.1 HMT-530 T20736 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T20736 4 2480243 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/465/GCA_003384465.1_ASM338446v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07711250 ASM338446v1 Contig Geneious v. 8.1.8 2017-09-27T17:23:02.840 USA: Seattle Tissue Shoulder humeral membrane Illumina University of Washington 75.0x 99.64 100 0 99.99 0.04 GCF_003384465.1 PCNM01 2311 2384 2384 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384485.1 HMT-530 T20758 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T20758 5 2480536 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/485/GCA_003384485.1_ASM338448v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07711251 ASM338448v1 Contig Geneious v. 8.1.8 2017-09-27T17:27:03.270 USA: Seattle Tissue Left Shoulder Illumina University of Washington 56.8x 99.64 100 0 99.99 0.04 GCF_003384485.1 PCNN01 2311 2384 2384 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384495.1 HMT-530 T20816 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T20816 4 2480225 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/495/GCA_003384495.1_ASM338449v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07711252 ASM338449v1 Contig Geneious v. 8.1.8 2017-09-27T17:33:03.587 USA: Seattle Tissue Left Shoulder humeral membrane Illumina University of Washington 50.7x 99.64 100 0 99.99 0.03 GCF_003384495.1 PCNO01 2312 2385 2385 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384525.1 HMT-530 T29350 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T29350 6 2479249 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/525/GCA_003384525.1_ASM338452v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07711253 ASM338452v1 Contig Geneious v. 8.1.8 2017-09-27T17:36:03.610 USA: Seattle Wound Right Shoulder stem explant Illumina University of Washington 55.7x 99.71 100 0 99.99 0.07 GCF_003384525.1 PCNP01 2306 2379 2379 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384535.1 HMT-530 T29362 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T29362 6 2479242 60.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/535/GCA_003384535.1_ASM338453v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07711254 ASM338453v1 Contig Geneious v. 8.1.8 2017-09-27T17:41:03.260 USA: Seattle Wound Skin Right Shoulder eSwab Illumina University of Washington 63.0x 99.71 100 0 99.99 0.03 GCF_003384535.1 PCNQ01 2306 2379 2379 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384555.1 HMT-530 T29420 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T29420 4 2478671 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/555/GCA_003384555.1_ASM338455v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07711255 ASM338455v1 Contig Geneious v. 8.1.8 2017-09-27T17:46:03.647 USA: Seattle Wound Skin Left Shoulder non operational Illumina University of Washington 50.7x 99.71 100 0 99.99 0.06 GCF_003384555.1 PCNR01 2311 2384 2384 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_003384605.1 HMT-791 T34998 Named Cultivated Skin (Abundance: Medium) HMT-791 Cutibacterium namnetense T34998 6 2399850 60.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/605/GCA_003384605.1_ASM338460v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium namnetense PRJNA393885 1574624 SAMN07711856 ASM338460v1 Contig Geneious v. 8.1.8 2017-09-27T18:33:02.766 USA: Seattle Wound Right Shoulder operative skin Illumina University of Washington 22.5x 99.4 99.01 0 99.97 0.22 GCF_003384605.1 PCZS01 2205 2280 2280 21 4 49 1 Cutibacterium_namnetense_homd_HMT_791 GCA_003384615.1 HMT-193 T33958 Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum T33958 5 2641556 59.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/384/615/GCA_003384615.1_ASM338461v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJNA393885 2559073 SAMN07711853 ASM338461v1 Contig Geneious v. 8.1.8 2017-09-27T18:11:03.283 USA: Seattle Wound Skin Left Shoulder non operative Illumina University of Washington 55.6x 99.94 100 0 100 0.26 GCF_003384615.1 PCZR01 2579 2655 2655 24 4 47 1 Cutibacterium_modestum_homd_HMT_193 GCA_003390455.1 HMT-718 M27794 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M27794 1 2148960 39.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/390/455/GCA_003390455.1_ASM339045v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AE PRJNA428178 729 SAMN09760371 ASM339045v1 Complete Genome HGAP v. 3 2018-08-02T10:39:07.140 not applicable not collected PacBio Centers for Disease Control and Prevention 95.3x 95.56 99.89 0 100 0.01 GCF_003390455.1 1980 2104 2104 47 19 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_003390995.1 HMT-530 KCOM 1315 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes KCOM 1315 1 2560321 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/390/995/GCA_003390995.1_ASM339099v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA484093 1747 SAMN09759490 ASM339099v1 Complete Genome RS HGAP v. 3.0 2018-08-02T04:18:07.066 South Korea: Gwangju Pus, osteomyelitis PacBio; Illumina HiSeq Korean Collection for Oral Microbiology 1108.5x 99.16 100 0 100 0.12 GCF_003390995.1 2368 2449 2449 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_003397585.1 HMT-846 UGent 18.01 Named Cultivated Vaginal (Abundance: High) HMT-846 Gardnerella piotii UGent 18.01 5 1514270 42.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/397/585/GCA_003397585.1_ASM339758v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium piotii PRJNA474758 2792977 SAMN09373177 ASM339758v1 Contig SPAdes v. 3.11.1 2018-06-05T19:32:05.110 Belgium: Ghent vagina Illumina MiSeq Ghent University 740.0x 100 0 99.98 0.15 GCF_003397585.1 QJUV01 1159 1221 1221 11 5 45 1 Gardnerella_piotii_homd_HMT_846 GCA_003397615.1 HMT-846 UGent 21.28 Named Cultivated Vaginal (Abundance: High) HMT-846 Gardnerella piotii UGent 21.28 3 1547915 42.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/397/615/GCA_003397615.1_ASM339761v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium piotii PRJNA474758 2702 SAMN09373178 ASM339761v1 Scaffold CLC Genomics Workbench v. 10.0.1 2018-06-05T19:32:05.130 Belgium: Ghent vagina Illumina MiSeq Ghent University 735.0x 89.7 100 0 99.97 0.14 GCF_003397615.1 QJUU01 1196 1258 1258 13 3 45 1 Gardnerella_piotii_homd_HMT_846 GCA_003397635.1 HMT-867 UGent 09.48 Named Cultivated Vaginal (Abundance: High) HMT-867 Gardnerella leopoldii UGent 09.48 3 1470925 42.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/397/635/GCA_003397635.1_ASM339763v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium leopoldii PRJNA474758 2702 SAMN09373176 ASM339763v1 Scaffold SPAdes v. 3.11.1 2018-06-05T19:32:05.090 Belgium: Ghent vagina Illumina MiSeq Ghent University 914.0x 87.31 100 0 99.78 0.25 GCF_003397635.1 QJUW01 1109 1171 1171 13 3 45 1 Gardnerella_leopoldii_homd_HMT_867 GCA_003397685.1 HMT-829 ATCC 14018 Named Cultivated Vaginal (Abundance: High) HMT-829 Gardnerella vaginalis ATCC 14018 2 1661998 41.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/397/685/GCA_003397685.1_ASM339768v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium vaginale PRJNA474758 585528 SAMN09373172 ASM339768v1 Contig SPAdes v. 3.11.1 2018-06-05T19:32:04.983 USA vagina Illumina MiSeq Ghent University 588.0x 99.99 99.55 0 99.99 0.59 GCF_003397685.1 QJUZ01 1263 1327 1327 15 3 45 1 Gardnerella_vaginalis_homd_HMT_829 GCA_003397705.1 HMT-868 GS 9838-1 Named Cultivated Vaginal (Abundance: High) HMT-868 Gardnerella swidsinskii GS 9838-1 9 1622089 41.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/397/705/GCA_003397705.1_ASM339770v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium swidsinskii PRJNA474758 2792979 SAMN09373170 ASM339770v1 Contig SPAdes v. 3.11.1 2018-06-05T19:32:04.933 Russia: St-Petersburg vagina Illumina MiSeq Ghent University 739.0x 100 0.17 99.99 0.89 GCF_003397705.1 QJVB01 1277 1341 1341 14 4 45 1 Gardnerella_swidsinskii_homd_HMT_868 GCA_003397745.1 HMT-868 GS 10234 Named Cultivated Vaginal (Abundance: High) HMT-868 Gardnerella swidsinskii GS 10234 3 1589042 41.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/397/745/GCA_003397745.1_ASM339774v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium swidsinskii PRJNA474758 2702 SAMN09373171 ASM339774v1 Scaffold SPAdes v. 3.11.1 2018-06-05T19:32:04.963 Russia: St-Petersburg vagina Illumina MiSeq Ghent University 775.0x 88.3 99.93 0 99.99 0.65 GCF_003397745.1 QJVA01 1221 1283 1283 13 3 45 1 Gardnerella_swidsinskii_homd_HMT_868 GCA_003408635.1 HMT-740 phDV1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-740 Pseudomonas oleovorans phDV1 1 4727682 62.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/408/635/GCA_003408635.1_ASM340863v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E oleovorans PRJNA485677 253237 SAMN09812539 ASM340863v1 Complete Genome SMRT v. JUL-2018 2018-08-13T06:13:02.937 Denmark petroleum-contaminated soi PacBio RSII The Max Planck Institute of Biophysics 208.0x 99.84 1.21 100 0.58 GCF_003408635.1 4399 4693 4693 211 12 70 1 Pseudomonas_oleovorans_homd_HMT_740 GCA_003417445.1 HMT-153 ATCC 13048 Named Cultivated Nasal (Abundance: Medium) HMT-153 Klebsiella aerogenes ATCC 13048 61 5236772 54.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/417/445/GCA_003417445.1_ASM341744v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella aerogenes PRJNA486324 548 SAMN09843510 ASM341744v1 Contig SPAdes v. 3.11.1 2018-08-16T10:50:03.073 USA: South Carolina sputum IonTorrent Environment and Climate Change Canada 178.0x 99.98 99.63 0.39 100 0.94 GCF_003417445.1 QVMZ01 5122 5325 5325 123 9 70 1 Klebsiella_aerogenes_homd_HMT_153 GCA_003417575.1 HMT-612 ATCC 13525 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-612 Pseudomonas fluorescens ATCC 13525 279 6447692 59.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/417/575/GCA_003417575.1_ASM341757v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E fluorescens PRJNA486371 294 SAMN09844436 ASM341757v1 Contig SPAdes v. 3.11.1 2018-08-16T15:31:02.797 United Kingdom: Reading town w Pre-filter tanks IonTorrent Environment and Climate Change Canada 78.0x 99.96 98.37 1.2 99.99 0.75 GCF_003417575.1 QVNA01 6398 6566 6566 94 7 66 1 Pseudomonas_fluorescens_homd_HMT_612 GCA_003425445.1 HMT-641 P621-7028 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P621-7028 1 1838740 38.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/445/GCA_003425445.1_ASM342544v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_I PRJNA282520 727 SAMN07421898 ASM342544v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:06.263 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 188.0x 97.04 99.67 0.8 100 0.54 GCF_003425445.1 1723 1833 1833 32 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425465.1 HMT-641 P650-8603 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P650-8603 1 1833710 38.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/465/GCA_003425465.1_ASM342546v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJNA282520 727 SAMN07421927 ASM342546v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:06.746 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 147.0x 97.13 99.67 0 100 0.03 GCF_003425465.1 1723 1833 1833 33 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425485.1 HMT-641 P652-8881 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P652-8881 1 1811303 38.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/485/GCA_003425485.1_ASM342548v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421929 ASM342548v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:06.776 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 168.0x 97.24 99.77 0.23 100 0 GCF_003425485.1 1674 1782 1782 30 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425505.1 HMT-641 P669-6977 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P669-6977 1 2013003 38.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/505/GCA_003425505.1_ASM342550v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421944 ASM342550v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:07.006 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 141.0x 99.07 99.77 0 100 0.02 GCF_003425505.1 1970 2086 2086 37 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425525.1 HMT-641 P642-4396 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P642-4396 1 1897311 38.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/525/GCA_003425525.1_ASM342552v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421919 ASM342552v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:06.630 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 156.0x 97.7 99.77 0.23 100 0.01 GCF_003425525.1 1802 1915 1915 34 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425565.1 HMT-641 P679-2791 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P679-2791 1 1858634 38.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/565/GCA_003425565.1_ASM342556v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421955 ASM342556v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:07.166 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 168.0x 98.89 99.77 0 100 0 GCF_003425565.1 1748 1862 1862 34 19 60 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425585.1 HMT-641 P636-8296 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P636-8296 1 1840498 38.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/585/GCA_003425585.1_ASM342558v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421913 ASM342558v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:06.503 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 199.0x 99.08 99.77 0 100 0 GCF_003425585.1 1727 1840 1840 34 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425605.1 HMT-641 P676-2514 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P676-2514 1 1858630 38.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/605/GCA_003425605.1_ASM342560v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421951 ASM342560v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:07.106 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 83.0x 98.89 99.77 0 100 0 GCF_003425605.1 1751 1865 1865 34 19 60 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425625.1 HMT-641 P672-7661 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P672-7661 1 1833305 38.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/625/GCA_003425625.1_ASM342562v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421947 ASM342562v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:07.046 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 129.0x 97.25 99.45 0.8 100 0.56 GCF_003425625.1 1693 1803 1803 31 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425645.1 HMT-641 P665-7858 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P665-7858 1 1908143 38.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/645/GCA_003425645.1_ASM342564v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJNA282520 727 SAMN07421940 ASM342564v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:06.950 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 114.0x 97.14 99.56 0.22 100 0.05 GCF_003425645.1 1840 1951 1951 33 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425715.1 HMT-641 P617-9224 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P617-9224 1 1848210 38.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/715/GCA_003425715.1_ASM342571v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421894 ASM342571v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:06.203 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 181.0x 99.07 99.73 0 100 0 GCF_003425715.1 1746 1859 1859 33 19 60 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425765.1 HMT-641 P595-8370 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P595-8370 1 1833864 38.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/765/GCA_003425765.1_ASM342576v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJNA282520 727 SAMN07421872 ASM342576v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:05.876 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 134.0x 97.11 99.67 0 100 0.03 GCF_003425765.1 1722 1832 1832 33 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425775.1 HMT-530 P15-077 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-077 5 2479049 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/775/GCA_003425775.1_ASM342577v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07343970 ASM342577v1 Contig Geneious-Geneiouss own assembler v. 8.1.8 2017-07-11T19:13:02.936 USA: Seattle Shoulder wound Illumina University of Washington 70.4x 99.93 98.94 0.03 100 0.11 GCF_003425775.1 NMRI01 2297 2371 2371 23 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_003425815.1 HMT-641 P615-8618 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P615-8618 1 1840062 38.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/815/GCA_003425815.1_ASM342581v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421892 ASM342581v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:06.173 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 146.0x 97.04 99.67 0.8 100 0.54 GCF_003425815.1 1724 1834 1834 32 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425855.1 HMT-530 P15-071 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-071 6 2517904 59.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/855/GCA_003425855.1_ASM342585v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07343963 ASM342585v1 Contig Geneious-Geneiouss own assembler v. 8.1.8 2017-07-11T19:07:04.973 USA: Seattle Shoulder wound Illumina University of Washington 15.0x 99.96 100 0 99.98 0.01 GCF_003425855.1 NOWN01 2362 2435 2435 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_003425935.1 HMT-641 P641-4342 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P641-4342 1 1849483 38.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/935/GCA_003425935.1_ASM342593v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421918 ASM342593v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:06.616 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 125.0x 97.73 99.77 0.23 100 0 GCF_003425935.1 1733 1845 1845 33 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_003425955.1 HMT-641 P662-7189 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P662-7189 1 1904311 38.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/955/GCA_003425955.1_ASM342595v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421937 ASM342595v1 Complete Genome HGAP v. 2.3.0 2017-07-28T08:56:06.893 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 142.0x 98.1 99.63 0 100 0.01 GCF_003425955.1 1824 1935 1935 33 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_003426225.1 HMT-530 P15-014 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-014 5 2546045 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/426/225/GCA_003426225.1_ASM342622v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07343882 ASM342622v1 Contig Geneious v. 8.1.8 2017-07-11T18:12:04.786 USA: Seattle Shoulder Tissue (Collar membrane) Illumina University of Washington 58.3x 99.17 100 0 99.99 0.12 GCF_003426225.1 NMRH01 2353 2428 2428 23 3 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_003426255.1 HMT-530 P15-021 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-021 5 2477474 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/426/255/GCA_003426255.1_ASM342625v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07343855 ASM342625v1 Contig Geneious v. 8.1.8 2017-07-11T17:28:02.940 USA: Seattle Shoulder tissue (suture) Illumina University of Washington 56.7x 99.96 99.43 0.03 100 0.12 GCF_003426255.1 NMRG01 2297 2372 2372 23 4 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_003426585.1 HMT-552 P16-029 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum P16-029 20 2693320 63.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/426/585/GCA_003426585.1_ASM342658v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA393885 33010 SAMN07414774 ASM342658v1 Contig Geneious v. 8.1.8 2017-07-25T20:22:03.643 USA: Seattle wound right preskin Illumina University of Washington 50.0x 96.45 100 0 99.99 0.13 GCF_003426585.1 NOWI01 2409 2491 2491 28 5 48 1 Cutibacterium_avidum_homd_HMT_552 GCA_003426685.1 HMT-530 P15-165 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-165 5 2535498 60.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/426/685/GCA_003426685.1_ASM342668v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA393885 1747 SAMN07414779 ASM342668v1 Contig Geneious v. 8.1.8 2017-07-25T21:06:03.523 USA: Seattle Wound Right Humeral explant Illumina University of Washington 103.0x 99.55 100 0 100 0.27 GCF_003426685.1 NOWM01 2345 2421 2421 24 3 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_003428395.1 HMT-819 IDCC9203 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-819 Lactobacillus johnsonii IDCC9203 1 1898461 34.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/428/395/GCA_003428395.1_ASM342839v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii PRJNA486604 33959 SAMN09858432 ASM342839v1 Complete Genome HGAP v. 3.0 2018-08-19T04:14:04.516 South Korea: Gyeonggi Infant feces PacBio RSII; Illumina HiSeq Research Laboratories, Ildong Pharmaceutical 6.0x 99.43 99.22 0 99.99 0.19 GCF_003428395.1 1882 2012 2012 30 21 78 1 Lactobacillus_johnsonii_homd_HMT_819 GCA_003433295.1 HMT-673 ATCC 700079 Named Cultivated Oral (Abundance: Scarce) HMT-673 Hornefia minuta ATCC 700079 2 1906764 46.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/433/295/GCA_003433295.1_ASM343329v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Hornefia;s__Hornefia minuta PRJNA282954 888721 SAMN03897724 ASM343329v1 Chromosome Newbler v. rd454_mapasm_v3.0_prerel_03112014 2015-07-23T20:18:24.000 Japan: Niigata Subgingival plaque, periodontal pocket Illumina MiSeq The Forsyth Institute 31.0x 96.81 0.6 96.23 1.45 GCF_003433295.1 1580 1650 1650 19 7 43 1 Hornefia_minuta_homd_HMT_673 GCA_003433955.1 HMT-792 OF01-3 Named Cultivated Skin (Abundance: Medium) HMT-792 Anaerococcus nagyae OF01-3 16 1825047 30.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/433/955/GCA_003433955.1_ASM343395v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus nagyae PRJNA482748 1755241 SAMN09736673 ASM343395v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:12.833 China: Shenzhen feces Illumina Hiseq BGI 100.0x 99.12 98.78 0.61 99.46 0.91 GCF_003433955.1 QVEU01 1696 1779 1779 30 5 47 1 Anaerococcus_nagyae_homd_HMT_792 GCA_003435685.1 HMT-976 AM22-3LB Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-976 Phocaeicola massiliensis AM22-3LB 63 3948010 42.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/435/685/GCA_003435685.1_ASM343568v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola massiliensis PRJNA482748 2292941 SAMN09734914 ASM343568v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:17.290 China: Shenzhen feces Illumina Hiseq BGI 100.0x 99.26 0.19 99.93 0 GCF_003435685.1 QTUN01 3284 3389 3389 29 3 72 1 Phocaeicola_massiliensis_homd_HMT_976 GCA_003436905.1 HMT-543 TF09-3AT Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus TF09-3AT 37 1982541 38.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/436/905/GCA_003436905.1_ASM343690v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA482748 1328 SAMN09736928 ASM343690v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:16.693 China: Shenzhen feces Illumina Hiseq BGI 100.0x 95.41 99.88 0.77 100 1.15 GCF_003436905.1 QSQZ01 1996 2075 2075 40 4 34 1 Streptococcus_anginosus_homd_HMT_543 GCA_003437975.1 HMT-411 TF04-5-2 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis TF04-5-2 85 2029175 42.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/437/975/GCA_003437975.1_ASM343797v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_X PRJNA482748 1318 SAMN09736870 ASM343797v1 Contig SPAdes v. 3.1.0 2018-07-30T02:31:15.787 China: Shenzhen feces IonProton BGI 100.0x 94.39 99.55 0.17 98.48 0.84 GCF_003437975.1 QSST01 2055 2140 2140 33 6 45 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_003438095.1 HMT-076 OM08-17AT Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri OM08-17AT 28 2673248 32.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/438/095/GCA_003438095.1_ASM343809v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA482748 1292 SAMN09736853 ASM343809v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:15.547 China: Shenzhen feces Illumina Hiseq BGI 100.0x 99.62 99.73 0.1 100 0.24 GCF_003438095.1 QSTD01 2607 2650 0 0 4 38 1 Staphylococcus_warneri_homd_HMT_076 GCA_003438185.1 HMT-021 OM08-1 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis OM08-1 52 1898011 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/438/185/GCA_003438185.1_ASM343818v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA482748 1343 SAMN09736843 ASM343818v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:15.383 China: Shenzhen feces Illumina Hiseq BGI 100.0x 96.82 99.56 0.23 100 0.01 GCF_003438185.1 QSTK01 1795 1877 1877 42 3 36 1 Streptococcus_vestibularis_homd_HMT_021 GCA_003438245.1 HMT-456 OM06-9 Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis OM06-9 8 1965871 42.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/438/245/GCA_003438245.1_ASM343824v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA482748 1156431 SAMN09736829 ASM343824v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:15.176 China: Shenzhen feces Illumina Hiseq BGI 100.0x 96.11 99.83 0 100 0.01 GCF_003438245.1 QSTR01 1813 1894 0 31 3 46 1 Streptococcus_ilei_homd_HMT_456 GCA_003438305.1 HMT-977 OM06-2 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-977 Phocaeicola plebeius OM06-2 63 3889096 44.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/438/305/GCA_003438305.1_ASM343830v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius PRJNA482748 310297 SAMN09736821 ASM343830v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:15.016 China: Shenzhen feces Illumina Hiseq BGI 100.0x 97.13 99.25 1.18 99.92 0.37 GCF_003438305.1 QSTW01 3484 3584 3584 16 3 80 1 Phocaeicola_plebeius_homd_HMT_977 GCA_003439105.1 HMT-543 OM04-6BH Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus OM04-6BH 18 1893088 38.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/439/105/GCA_003439105.1_ASM343910v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA482748 1328 SAMN09736789 ASM343910v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:14.550 China: Shenzhen feces Illumina Hiseq BGI 100.0x 96.01 99.88 0 99.99 0.13 GCF_003439105.1 QSUT01 1852 1928 1928 35 3 37 1 Streptococcus_anginosus_homd_HMT_543 GCA_003443915.1 HMT-833 MC1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis MC1 1 1843517 41.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/443/915/GCA_003443915.1_ASM344391v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA272372 480 SAMN03281022 ASM344391v1 Chromosome CLC v. 7.5 2015-01-12T03:54:33.743 Poland: Wroclaw throat Illumina Wroclaw University 516.0x 99.19 100 0.28 100 0.01 GCF_003443915.1 1652 1725 1725 10 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003443935.1 HMT-833 MC5 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis MC5 1 1852323 41.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/443/935/GCA_003443935.1_ASM344393v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA272372 480 SAMN03281025 ASM344393v1 Chromosome CLC Genomic Workbench v. 7.5 2015-01-12T04:15:49.456 Poland: Wroclaw throat Illumina Wroclaw University 554.0x 99.18 99.38 0.27 100 0.01 GCF_003443935.1 1659 1732 1732 10 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003443955.1 HMT-833 MC6 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis MC6 1 1839052 41.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/443/955/GCA_003443955.1_ASM344395v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA272372 480 SAMN03281026 ASM344395v1 Chromosome CLC Genomic Workbench v. 7.5 2015-01-12T04:18:33.606 Poland: Wroclaw oropharynx Illumina Wroclaw University 504.0x 99.21 99.72 0.28 100 0 GCF_003443955.1 1630 1702 1702 9 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003443975.1 HMT-833 MC8 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis MC8 1 1849375 41.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/443/975/GCA_003443975.1_ASM344397v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA272372 480 SAMN03281027 ASM344397v1 Chromosome CLC Genomic Workbench v. 7.5 2015-01-12T04:31:06.636 Poland: Wroclaw throat Illumina Wroclaw University 499.0x 99.14 99.45 0.27 100 0.01 GCF_003443975.1 1652 1723 1723 8 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003454775.1 HMT-111 KCOM 1037 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra KCOM 1037 1 1661863 28.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/454/775/GCA_003454775.1_ASM345477v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA485032 33033 SAMN09781070 ASM345477v1 Complete Genome RS HGAP v. 3.0; SPAdes v. 3.8.2 2018-08-08T03:45:05.563 South Korea: Gwangju Postoperative maxillary cyst PacBio; Illumina HiSeq Korean Collection for Oral Microbiology 1407.4x 97.62 97.87 0.61 99.25 0.83 GCF_003454775.1 1517 1604 1604 34 11 41 1 Parvimonas_micra_homd_HMT_111 GCA_003458095.1 HMT-718 M11360 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M11360 34 2119881 39.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/458/095/GCA_003458095.1_ASM345809v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA428178 729 SAMN09760373 ASM345809v1 Contig SPAdes v. 3.7.0 2018-08-02T10:39:07.186 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 52.7x 99.99 99.89 0.31 100 0.06 GCF_003458095.1 QSWP01 1974 2086 2086 55 10 46 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_003459805.1 HMT-678 AF18-46 Named Cultivated Oral (Abundance: Medium) HMT-678 Solobacterium moorei AF18-46 7 1989891 36.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/459/805/GCA_003459805.1_ASM345980v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia;s__Bulleidia moorei PRJNA482748 102148 SAMN09734367 ASM345980v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:09.130 China: Shenzhen feces Illumina Hiseq BGI 100.0x 98.21 100 0 97.55 0.21 GCF_003459805.1 QRWX01 1916 1993 1993 30 3 43 1 Solobacterium_moorei_homd_HMT_678 GCA_003460925.1 HMT-962 AF26-25AA Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-962 Hominimerdicola aceti AF26-25AA 34 2897972 42.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/460/925/GCA_003460925.1_ASM346092v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola;s__Hominimerdicola aceti PRJNA482748 2293169 SAMN09734514 ASM346092v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:11.400 China: Shenzhen feces Illumina Hiseq BGI 100.0x 98.63 0 100 3.44 GCF_003460925.1 QTWC01 2657 2728 2728 21 3 46 1 Hominimerdicola_aceti_homd_HMT_962 GCA_003461645.1 HMT-966 AF14-19 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-966 Alistipes shahii AF14-19 58 3668313 57.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/461/645/GCA_003461645.1_ASM346164v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii PRJNA482748 2292910 SAMN09734250 ASM346164v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:07.377 China: Shenzhen feces Illumina Hiseq BGI 100.0x 100 0 99.99 1.57 GCF_003461645.1 QTXM01 3180 3251 3251 17 3 50 1 Alistipes_shahii_homd_HMT_966 GCA_003462285.1 HMT-976 AM25-34 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-976 Phocaeicola massiliensis AM25-34 71 4177369 42.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/462/285/GCA_003462285.1_ASM346228v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola massiliensis PRJNA482748 2292944 SAMN09736317 ASM346228v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:07.330 China: Shenzhen feces Illumina Hiseq BGI 100.0x 99.26 0.19 99.97 0.01 GCF_003462285.1 QTYS01 3592 3716 3716 55 3 65 1 Phocaeicola_massiliensis_homd_HMT_976 GCA_003464005.1 HMT-161 AM48-14BH Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula AM48-14BH 111 2087186 38.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/464/005/GCA_003464005.1_ASM346400v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA482748 29466 SAMN09736605 ASM346400v1 Scaffold SPAdes v. 3.1.0 2018-07-30T02:31:11.813 China: Shenzhen feces IonProton BGI 100.0x 97.02 98.5 0 94.58 4.32 GCF_003464005.1 QSEQ01 2059 2134 2134 21 5 48 1 Veillonella_parvula_homd_HMT_161 GCA_003464965.1 HMT-969 AF12-7 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-969 Bacteroides stercoris AF12-7 45 4015577 46.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/464/965/GCA_003464965.1_ASM346496v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris PRJNA482748 46506 SAMN09734224 ASM346496v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:06.967 China: Shenzhen feces Illumina Hiseq BGI 100.0x 98.76 99.26 0.37 99.73 0.47 GCF_003464965.1 QSAF01 3458 3529 3529 14 3 54 0 Bacteroides_stercoris_homd_HMT_969 GCA_003465965.1 HMT-161 AF04-47 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula AF04-47 21 2140208 38.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/465/965/GCA_003465965.1_ASM346596v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA482748 29466 SAMN09734183 ASM346596v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:06.313 China: Shenzhen feces Illumina Hiseq BGI 100.0x 96.36 100 0 99.98 0.11 GCF_003465965.1 QSBH01 1919 1986 1986 23 5 38 1 Veillonella_parvula_homd_HMT_161 GCA_003466855.1 HMT-686 AM44-1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans AM44-1 12 2020615 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/466/855/GCA_003466855.1_ASM346685v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA482748 1309 SAMN09736576 ASM346685v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:11.333 China: Shenzhen feces Illumina Hiseq BGI 100.0x 99.33 100 0 100 0.05 GCF_003466855.1 QSFF01 1910 1979 1979 29 3 36 1 Streptococcus_mutans_homd_HMT_686 GCA_003468065.1 HMT-960 AM42-1 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-960 Agathobacter rectalis AM42-1 36 3373739 41.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/468/065/GCA_003468065.1_ASM346806v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__Agathobacter rectalis PRJNA482748 39491 SAMN09736536 ASM346806v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:10.750 China: Shenzhen feces Illumina Hiseq BGI 100.0x 98.06 99.52 1.21 99.99 0.14 GCF_003468065.1 QSGF01 3191 3330 3330 79 2 57 1 Agathobacter_rectalis_homd_HMT_960 GCA_003469295.1 HMT-977 AM31-10 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-977 Phocaeicola plebeius AM31-10 82 3723715 44.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/469/295/GCA_003469295.1_ASM346929v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius PRJNA482748 310297 SAMN09736423 ASM346929v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:08.903 China: Shenzhen feces Illumina Hiseq BGI 100.0x 97.14 98.88 0.37 99.89 0.06 GCF_003469295.1 QSJG01 3167 3255 3255 17 3 67 1 Phocaeicola_plebeius_homd_HMT_977 GCA_003469565.1 HMT-411 AM27-45 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis AM27-45 40 2059623 41.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/469/565/GCA_003469565.1_ASM346956v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_C PRJNA482748 1318 SAMN09736362 ASM346956v1 Contig SPAdes v. 3.1.0 2018-07-30T02:31:07.997 China: Shenzhen feces IonProton BGI 100.0x 94.21 98.97 0.17 95.62 1.41 GCF_003469565.1 QSKM01 2128 2218 2218 38 8 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_003469915.1 HMT-622 AM27-4 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii AM27-4 11 2231694 40.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/469/915/GCA_003469915.1_ASM346991v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA482748 1302 SAMN09736360 ASM346991v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:07.967 China: Shenzhen feces Illumina Hiseq BGI 100.0x 95.42 100 0 100 0.08 GCF_003469915.1 QSKN01 2066 2148 2148 33 3 45 1 Streptococcus_gordonii_homd_HMT_622 GCA_003470225.1 HMT-684 AM25-21AC Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-684 Mitsuokella multacida AM25-21AC 24 2505597 58.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/470/225/GCA_003470225.1_ASM347022v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;s__Mitsuokella multacida PRJNA482748 52226 SAMN09736308 ASM347022v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:07.200 China: Shenzhen feces Illumina Hiseq BGI 100.0x 96.7 100 0.31 100 0 GCF_003470225.1 QRHE01 2217 2317 2317 27 3 69 1 Mitsuokella_multacida_homd_HMT_684 GCA_003470675.1 HMT-974 AM16-50 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-974 Parabacteroides merdae AM16-50 18 4595261 45.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/470/675/GCA_003470675.1_ASM347067v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae PRJNA482748 46503 SAMN09734838 ASM347067v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:16.110 China: Shenzhen feces Illumina Hiseq BGI 100.0x 97.94 99.62 0 100 0.46 GCF_003470675.1 QRKC01 3823 3914 3914 17 3 70 1 Parabacteroides_merdae_homd_HMT_974 GCA_003471645.1 HMT-977 AM17-44 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-977 Phocaeicola plebeius AM17-44 88 3530609 44.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/471/645/GCA_003471645.1_ASM347164v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius PRJNA482748 310297 SAMN09734851 ASM347164v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:16.313 China: Shenzhen feces Illumina Hiseq BGI 100.0x 97.31 99.25 0.19 99.93 0 GCF_003471645.1 QRJS01 2966 3110 3110 44 4 95 1 Phocaeicola_plebeius_homd_HMT_977 GCA_003474105.1 HMT-156 AF42-16 Named Cultivated Oral (Abundance: High) HMT-156 Veillonella nakazawae AF42-16 119 2033458 38.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/474/105/GCA_003474105.1_ASM347410v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella nakazawae PRJNA482748 2292078 SAMN09734700 ASM347410v1 Scaffold SPAdes v. 3.1.0 2018-07-29T08:47:14.090 China: Shenzhen feces IonProton BGI 100.0x 100 0 94.05 0.33 GCF_003474105.1 QRNT01 1971 2035 2035 17 2 44 1 Veillonella_nakazawae_homd_HMT_156 GCA_003474305.1 HMT-977 AF39-11 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-977 Phocaeicola plebeius AF39-11 76 3729283 44.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/474/305/GCA_003474305.1_ASM347430v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius PRJNA482748 310297 SAMN09734682 ASM347430v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:13.813 China: Shenzhen feces Illumina Hiseq BGI 100.0x 97.17 99.25 0.56 99.93 0.01 GCF_003474305.1 QROI01 3199 3298 3298 20 3 75 1 Phocaeicola_plebeius_homd_HMT_977 GCA_003474535.1 HMT-977 AF39-5AC Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-977 Phocaeicola plebeius AF39-5AC 80 3721697 44.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/474/535/GCA_003474535.1_ASM347453v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius PRJNA482748 310297 SAMN09734688 ASM347453v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:13.900 China: Shenzhen feces Illumina Hiseq BGI 100.0x 97.16 99.25 0.56 99.93 0.01 GCF_003474535.1 QROD01 3188 3285 3285 20 3 73 1 Phocaeicola_plebeius_homd_HMT_977 GCA_003474615.1 HMT-960 AF38-24 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-960 Agathobacter rectalis AF38-24 28 3096310 41.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/474/615/GCA_003474615.1_ASM347461v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__Agathobacter rectalis PRJNA482748 39491 SAMN09734675 ASM347461v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:13.710 China: Shenzhen feces Illumina Hiseq BGI 100.0x 96.97 99.52 0.24 99.98 0.02 GCF_003474615.1 QRON01 2893 3016 3016 64 2 56 1 Agathobacter_rectalis_homd_HMT_960 GCA_003474825.1 HMT-524 AF36-15BH Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica AF36-15BH 24 1992862 38.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/474/825/GCA_003474825.1_ASM347482v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA482748 39777 SAMN09734641 ASM347482v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:13.213 China: Shenzhen feces Illumina Hiseq BGI 100.0x 96.41 100 0 100 0.05 GCF_003474825.1 QRPF01 1818 1891 1891 19 6 47 1 Veillonella_atypica_homd_HMT_524 GCA_003490235.1 HMT-851 M19140 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19140 32 1912585 38.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/490/235/GCA_003490235.1_ASM349023v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704947 ASM349023v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.906 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 175.3x 95.26 99.66 0 100 0 GCF_003490235.1 QQIR01 1764 1852 1852 25 10 52 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003490305.1 HMT-851 M19155 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19155 30 1904880 38.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/490/305/GCA_003490305.1_ASM349030v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704948 ASM349030v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.920 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 183.2x 95.14 99.66 0 100 0 GCF_003490305.1 QQIA01 1744 1836 1836 28 10 53 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003490485.1 HMT-851 M26173 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M26173 19 1945566 38.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/490/485/GCA_003490485.1_ASM349048v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704965 ASM349048v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.206 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 197.2x 95.26 99.66 0 100 0 GCF_003490485.1 QQHG01 1841 1928 1928 26 8 52 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003490595.1 HMT-851 M19079 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19079 36 2010365 38.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/490/595/GCA_003490595.1_ASM349059v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704942 ASM349059v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.833 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 203.9x 95.14 99.66 0 100 0 GCF_003490595.1 QQGY01 1907 2002 2002 28 9 57 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003490655.1 HMT-851 M26156 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M26156 10 1758988 38.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/490/655/GCA_003490655.1_ASM349065v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_N PRJNA428178 726 SAMN09704958 ASM349065v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.083 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 207.0x 95.63 99.66 0.23 100 0.02 GCF_003490655.1 QQGV01 1648 1737 1737 27 9 52 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003490865.1 HMT-535 M22154 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius M22154 32 1810476 37.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/490/865/GCA_003490865.1_ASM349086v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_I PRJNA428178 727 SAMN09704918 ASM349086v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.470 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 225.2x 97.38 99.45 0 100 0.64 GCF_003490865.1 QQGI01 1721 1819 1819 35 11 51 1 Haemophilus_aegyptius_homd_HMT_535 GCA_003490935.1 HMT-851 M19099 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19099 21 1874589 38.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/490/935/GCA_003490935.1_ASM349093v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_M PRJNA428178 726 SAMN09704944 ASM349093v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.863 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 231.1x 95.32 99.66 0 100 0 GCF_003490935.1 QQGD01 1764 1860 1860 31 10 54 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003491025.1 HMT-851 M19164 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19164 45 1882562 38.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/491/025/GCA_003491025.1_ASM349102v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704950 ASM349102v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.950 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 242.2x 95.27 99.66 0 100 0 GCF_003491025.1 QQFX01 1734 1826 1826 26 10 55 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003491325.1 HMT-076 M0911 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri M0911 1 2438350 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/491/325/GCA_003491325.1_ASM349132v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri_A PRJNA397528 2025492 SAMN07460148 ASM349132v1 Complete Genome Celera Assembler v. 1.4 2017-08-08T05:31:02.620 Switzerland: Bern PacBio Institute of Veterinary Bacteriology, University of Bern 435.0x 99.73 0 99.99 0.05 GCF_003491325.1 2305 2435 2435 46 22 61 1 Staphylococcus_warneri_homd_HMT_076 GCA_003492145.1 HMT-649 M37142 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37142 36 2240538 51.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/145/GCA_003492145.1_ASM349214v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704855 ASM349214v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.450 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 107.0x 97.36 99.92 0 100 0.16 GCF_003492145.1 QQMV01 2089 2174 2174 26 3 55 1 Neisseria_lactamica_homd_HMT_649 GCA_003492155.1 HMT-649 M37110 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37110 34 2260405 52.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/155/GCA_003492155.1_ASM349215v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704847 ASM349215v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.330 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 109.0x 97.42 99.92 0 100 0.11 GCF_003492155.1 QQMU01 2140 2220 2220 25 3 51 1 Neisseria_lactamica_homd_HMT_649 GCA_003492195.1 HMT-649 M37058 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37058 40 2153695 52.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/195/GCA_003492195.1_ASM349219v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704839 ASM349219v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.210 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 110.6x 97.29 99.92 0 100 0.06 GCF_003492195.1 QQMS01 1984 2064 2064 22 3 54 1 Neisseria_lactamica_homd_HMT_649 GCA_003492345.1 HMT-649 M37073 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37073 20 2227184 52.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/345/GCA_003492345.1_ASM349234v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704840 ASM349234v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.226 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 115.6x 97.16 99.92 0 100 0.07 GCF_003492345.1 QQML01 2118 2196 2196 19 3 55 1 Neisseria_lactamica_homd_HMT_649 GCA_003492365.1 HMT-851 M19197 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19197 37 1985988 38.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/365/GCA_003492365.1_ASM349236v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704952 ASM349236v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.980 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 117.0x 95.25 99.66 0.08 100 0 GCF_003492365.1 QQMK01 1865 1964 1964 31 10 57 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003492385.1 HMT-649 M37155 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37155 33 2189734 52.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/385/GCA_003492385.1_ASM349238v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704857 ASM349238v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.480 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 119.8x 97.3 99.92 0 100 0.15 GCF_003492385.1 QQMI01 2041 2122 2122 24 3 53 1 Neisseria_lactamica_homd_HMT_649 GCA_003492425.1 HMT-649 M37130 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37130 50 2303282 52.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/425/GCA_003492425.1_ASM349242v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704849 ASM349242v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.363 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 120.0x 97.16 99.92 0 100 0.07 GCF_003492425.1 QQMH01 2179 2260 2260 23 3 54 1 Neisseria_lactamica_homd_HMT_649 GCA_003492465.1 HMT-649 M37094 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37094 31 2202297 52.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/465/GCA_003492465.1_ASM349246v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704844 ASM349246v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.286 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 13.0x 97.19 99.81 0 100 0.09 GCF_003492465.1 QQMF01 2086 2165 2165 20 3 55 1 Neisseria_lactamica_homd_HMT_649 GCA_003492555.1 HMT-649 M37157 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37157 33 2213525 52.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/555/GCA_003492555.1_ASM349255v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704858 ASM349255v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.496 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 126.9x 97.16 99.92 0 100 0.07 GCF_003492555.1 QQMA01 2094 2172 2172 18 4 55 1 Neisseria_lactamica_homd_HMT_649 GCA_003492625.1 HMT-649 M37137 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37137 34 2272111 52.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/625/GCA_003492625.1_ASM349262v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704853 ASM349262v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.420 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 129.1x 97.4 99.92 0 100 0.18 GCF_003492625.1 QQLW01 2137 2218 2218 23 4 53 1 Neisseria_lactamica_homd_HMT_649 GCA_003492745.1 HMT-851 M26166 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M26166 43 1992670 38.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/745/GCA_003492745.1_ASM349274v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704963 ASM349274v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.173 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 135.6x 95.26 99.66 0 100 0.12 GCF_003492745.1 QQLP01 1872 1968 1968 31 11 53 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003492765.1 HMT-649 M37078 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37078 45 2177704 52.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/765/GCA_003492765.1_ASM349276v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704841 ASM349276v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.240 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 131.1x 97.08 99.92 0 100 0.07 GCF_003492765.1 QQLS01 2057 2149 2149 34 3 54 1 Neisseria_lactamica_homd_HMT_649 GCA_003492775.1 HMT-649 M37136 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37136 27 2226877 52.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/775/GCA_003492775.1_ASM349277v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704852 ASM349277v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.406 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 135.1x 97.38 99.92 0 100 0.23 GCF_003492775.1 QQLQ01 2097 2180 2180 26 3 53 1 Neisseria_lactamica_homd_HMT_649 GCA_003492845.1 HMT-649 M37131 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37131 31 2138875 52.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/845/GCA_003492845.1_ASM349284v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704850 ASM349284v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.376 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 137.1x 97.33 99.92 0 100 0.06 GCF_003492845.1 QQLN01 1964 2043 2043 21 3 54 1 Neisseria_lactamica_homd_HMT_649 GCA_003492865.1 HMT-649 M37101 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37101 48 2192826 52.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/865/GCA_003492865.1_ASM349286v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704845 ASM349286v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.300 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 137.7x 97.37 99.92 0 100 0.27 GCF_003492865.1 QQLL01 2025 2108 2108 26 3 53 1 Neisseria_lactamica_homd_HMT_649 GCA_003492955.1 HMT-649 M37119 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37119 33 2185479 52.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/492/955/GCA_003492955.1_ASM349295v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704848 ASM349295v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.346 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 139.7x 97.39 99.92 0 100 0.12 GCF_003492955.1 QQLG01 2001 2088 2088 26 5 55 1 Neisseria_lactamica_homd_HMT_649 GCA_003493045.1 HMT-649 M37107 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37107 49 2172334 52.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/045/GCA_003493045.1_ASM349304v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704846 ASM349304v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.316 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 141.6x 97.43 99.92 0 100 0.11 GCF_003493045.1 QQLC01 2006 2088 2088 24 3 54 1 Neisseria_lactamica_homd_HMT_649 GCA_003493185.1 HMT-649 M37132 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37132 17 2168597 52.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/185/GCA_003493185.1_ASM349318v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704851 ASM349318v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.393 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 144.6x 97.27 99.92 0 100 0.1 GCF_003493185.1 QQKV01 2043 2120 2120 18 3 55 1 Neisseria_lactamica_homd_HMT_649 GCA_003493215.1 HMT-649 M37079 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37079 46 2198057 52.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/215/GCA_003493215.1_ASM349321v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704842 ASM349321v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.256 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 145.3x 97.17 99.92 0 100 0.22 GCF_003493215.1 QQKU01 2059 2138 2138 23 3 52 1 Neisseria_lactamica_homd_HMT_649 GCA_003493245.1 HMT-851 M26174 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M26174 23 1974928 38.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/245/GCA_003493245.1_ASM349324v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA428178 726 SAMN09704966 ASM349324v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.223 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 146.4x 95.88 99.66 0.08 100 0.07 GCF_003493245.1 QQKS01 1950 2048 2048 36 9 52 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003493365.1 HMT-851 M19122 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19122 31 1979082 38.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/365/GCA_003493365.1_ASM349336v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704945 ASM349336v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.876 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 150.7x 95.1 99.66 0 100 0 GCF_003493365.1 QQKM01 1887 1979 1979 29 9 53 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003493465.1 HMT-851 M25342 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M25342 22 1865692 38.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/465/GCA_003493465.1_ASM349346v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_M PRJNA428178 726 SAMN09704957 ASM349346v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.063 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 151.8x 95.43 99.66 0.23 100 0 GCF_003493465.1 QQKH01 1744 1838 1838 31 9 53 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003493485.1 HMT-535 M23174 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius M23174 14 1876170 37.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/485/GCA_003493485.1_ASM349348v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_I PRJNA428178 727 SAMN09704920 ASM349348v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.500 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 152.0x 97.24 99.67 0 100 0 GCF_003493485.1 QQKG01 1793 1889 1889 34 10 51 1 Haemophilus_aegyptius_homd_HMT_535 GCA_003493545.1 HMT-851 M26176 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M26176 46 2026824 38.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/545/GCA_003493545.1_ASM349354v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_O PRJNA428178 726 SAMN09704967 ASM349354v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.240 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 155.8x 94.99 99.66 0.23 100 0.03 GCF_003493545.1 QQKD01 1963 2063 2063 33 10 56 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003493605.1 HMT-851 M19187 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19187 29 1795109 38.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/605/GCA_003493605.1_ASM349360v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_J PRJNA428178 726 SAMN09704951 ASM349360v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.963 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 158.3x 94.43 99.66 0 100 0 GCF_003493605.1 QQKA01 1658 1746 1746 26 9 52 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003493685.1 HMT-851 M26161 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M26161 42 2065162 38.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/685/GCA_003493685.1_ASM349368v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_O PRJNA428178 726 SAMN09704961 ASM349368v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.140 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 160.7x 95.04 99.66 0.23 100 0.02 GCF_003493685.1 QQJW01 2030 2133 2133 35 11 56 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003493855.1 HMT-649 M37146 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37146 37 2174338 52.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/855/GCA_003493855.1_ASM349385v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704856 ASM349385v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.466 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 165.3x 97.3 99.92 0 100 0.1 GCF_003493855.1 QQJN01 1990 2069 2069 20 3 55 1 Neisseria_lactamica_homd_HMT_649 GCA_003493965.1 HMT-851 M19071 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19071 21 1914164 38.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/493/965/GCA_003493965.1_ASM349396v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704941 ASM349396v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.820 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 167.8x 95.27 99.66 0 100 0 GCF_003493965.1 QQJF01 1768 1856 1856 27 9 51 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494075.1 HMT-851 M19201 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19201 38 2079674 38.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/075/GCA_003494075.1_ASM349407v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704953 ASM349407v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.993 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 172.8x 95.15 99.66 0 100 0 GCF_003494075.1 QQIY01 1994 2089 2089 30 9 55 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494105.1 HMT-851 M26157 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M26157 16 1872515 38.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/105/GCA_003494105.1_ASM349410v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA428178 726 SAMN09704959 ASM349410v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.106 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 173.5x 95.33 99.89 0.23 100 0.02 GCF_003494105.1 QQIX01 1732 1819 1819 28 6 52 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494195.1 HMT-851 M19135 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19135 24 1947390 38.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/195/GCA_003494195.1_ASM349419v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704946 ASM349419v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.890 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 175.1x 95.3 99.66 0 100 0 GCF_003494195.1 QQIS01 1821 1911 1911 28 9 52 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494265.1 HMT-851 M19528 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19528 40 2041693 38.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/265/GCA_003494265.1_ASM349426v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704956 ASM349426v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.040 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 178.7x 95.11 99.66 0 99.99 0 GCF_003494265.1 QQIN01 1940 2035 2035 29 10 55 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494285.1 HMT-851 M19080 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19080 14 1945186 38.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/285/GCA_003494285.1_ASM349428v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_I PRJNA428178 726 SAMN09704943 ASM349428v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.850 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 179.4x 95.1 99.66 0 100 0 GCF_003494285.1 QQIL01 1821 1912 1912 28 10 52 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494485.1 HMT-851 M26160 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M26160 20 1910682 38.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/485/GCA_003494485.1_ASM349448v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus sp000242295 PRJNA428178 726 SAMN09704960 ASM349448v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.123 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 183.1x 95.56 99.66 0 100 0 GCF_003494485.1 QQIB01 1799 1891 1891 30 9 52 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494525.1 HMT-851 M26164 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M26164 14 1812369 38.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/525/GCA_003494525.1_ASM349452v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA428178 726 SAMN09704962 ASM349452v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.156 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 183.9x 95.79 99.66 0.11 100 0 GCF_003494525.1 QQHY01 1731 1825 1825 29 10 54 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494545.1 HMT-851 M28908 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M28908 15 1758067 38.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/545/GCA_003494545.1_ASM349454v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA428178 726 SAMN09704969 ASM349454v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:10.270 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 185.4x 95.74 99.66 0 100 0.26 GCF_003494545.1 QQHW01 1631 1719 1719 28 7 52 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494635.1 HMT-851 M11818 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M11818 17 1961876 38.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/635/GCA_003494635.1_ASM349463v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA428178 726 SAMN09704939 ASM349463v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.790 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 190.9x 95.56 99.66 0 100 0.01 GCF_003494635.1 QQHN01 1826 1949 1949 59 9 54 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494655.1 HMT-851 M19161 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19161 55 1915140 38.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/655/GCA_003494655.1_ASM349465v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_L PRJNA428178 726 SAMN09704949 ASM349465v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.936 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 191.5x 95.22 99.43 0 100 0 GCF_003494655.1 QQHM01 1769 1864 1864 26 10 58 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003494695.1 HMT-851 M19066 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus M19066 15 1845083 38.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/494/695/GCA_003494695.1_ASM349469v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA428178 726 SAMN09704940 ASM349469v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:09.803 not applicable not collected Illumina HiSeq Centers for Disease Control and Prevention 197.0x 95.44 99.43 0.08 100 0 GCF_003494695.1 QQHH01 1745 1842 1842 33 10 53 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_003495225.1 HMT-737 M38962 Named Cultivated Oral (Abundance: Scarce) HMT-737 Neisseria polysaccharea M38962 16 2057444 52.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/495/225/GCA_003495225.1_ASM349522v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria polysaccharea PRJNA428178 489 SAMN09704643 ASM349522v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:05.000 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 34.2x 94.95 99.53 0.38 99.99 0.01 GCF_003495225.1 QQEZ01 1937 2014 2014 18 3 55 1 Neisseria_polysaccharea_homd_HMT_737 GCA_003495405.1 HMT-649 M37179 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37179 43 2194397 52.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/495/405/GCA_003495405.1_ASM349540v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704863 ASM349540v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.570 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 37.5x 97.1 99.92 0 100 0.07 GCF_003495405.1 QQEQ01 2020 2095 2095 18 3 53 1 Neisseria_lactamica_homd_HMT_649 GCA_003495565.1 HMT-649 M37177 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37177 19 2128602 52.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/495/565/GCA_003495565.1_ASM349556v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704862 ASM349556v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.553 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 39.2x 97.16 99.7 0 100 0.06 GCF_003495565.1 QQEI01 1976 2054 2054 22 3 52 1 Neisseria_lactamica_homd_HMT_649 GCA_003495575.1 HMT-649 M37164 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37164 40 2137233 52.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/495/575/GCA_003495575.1_ASM349557v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704860 ASM349557v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.526 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 40.0x 97.1 99.92 0 100 0.17 GCF_003495575.1 QQEH01 1975 2068 2068 35 3 54 1 Neisseria_lactamica_homd_HMT_649 GCA_003495835.1 HMT-649 M37163 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37163 26 2224996 52.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/495/835/GCA_003495835.1_ASM349583v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704859 ASM349583v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.510 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 41.8x 97.16 99.92 0 100 0.06 GCF_003495835.1 QQDU01 2106 2185 2185 20 5 53 1 Neisseria_lactamica_homd_HMT_649 GCA_003496195.1 HMT-649 M37167 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37167 42 2160444 52.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/496/195/GCA_003496195.1_ASM349619v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704861 ASM349619v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.540 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 46.3x 97.6 99.92 0 100 0.13 GCF_003496195.1 QQDC01 2000 2078 2078 19 3 55 1 Neisseria_lactamica_homd_HMT_649 GCA_003496425.1 HMT-649 M37140 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37140 19 2194463 52.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/496/425/GCA_003496425.1_ASM349642v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704854 ASM349642v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.436 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 50.5x 97.15 99.92 0 100 0.07 GCF_003496425.1 QQCQ01 2063 2141 2141 19 3 55 1 Neisseria_lactamica_homd_HMT_649 GCA_003496485.1 HMT-649 M37084 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M37084 33 2173500 52.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/496/485/GCA_003496485.1_ASM349648v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704843 ASM349648v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.270 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 52.5x 97.1 99.92 0 100 0.14 GCF_003496485.1 QQCO01 2035 2111 2111 20 3 52 1 Neisseria_lactamica_homd_HMT_649 GCA_003496665.1 HMT-649 M17105 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica M17105 71 2182710 52.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/496/665/GCA_003496665.1_ASM349666v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJNA428178 486 SAMN09704837 ASM349666v1 Contig SPAdes v. 3.7.0 2018-07-23T15:50:08.180 not applicable not collected Illumina MiSeq Centers for Disease Control and Prevention 61.7x 97.33 99.92 0 100 0.06 GCF_003496665.1 QQCF01 2044 2129 2129 24 3 57 1 Neisseria_lactamica_homd_HMT_649 GCA_003514485.1 HMT-619 UBA8864 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis UBA8864 70 1783976 49.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/514/485/GCA_003514485.1_ASM351448v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA417962 837 SAMN08019346 ASM351448v1 Scaffold CLC de novo assembler v. 4.4.1 2017-11-13T20:25:22.827 not applicable metagenome Illumina HiSeq 2000 University of Queensland 26.9x 99.99 87.34 0 88.43 0.07 DOQB01 1465 1512 1512 9 0 37 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_003515045.1 HMT-291 KCOM 1525 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola KCOM 1525 2 2893847 50.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/515/045/GCA_003515045.1_ASM351504v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA485030 28129 SAMN09781058 ASM351504v1 Complete Genome RS HGAP v. 3.0; SPAdes v. 3.8.2 2018-08-08T03:27:06.223 South Korea: Gwangju Periapical abscess PacBio; Illumina HiSeq Korean Collection for Oral Microbiology 984.8x 97.91 99.32 0 99.8 0.18 GCF_003515045.1 2323 2395 2395 8 12 51 1 Prevotella_denticola_homd_HMT_291 GCA_003516125.3 HMT-753 CS-931 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-753 Cronobacter sakazakii CS-931 3 4437993 56.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/516/125/GCA_003516125.3_ASM351612v3 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter;s__Cronobacter sakazakii PRJNA399551 28141 SAMN07540307 ASM351612v3 Complete Genome Spades v. 3.11.0 2017-08-22T19:36:03.246 Mexico: Mexico City feces PacBio RSII; Illumina MiSeq Center for Genomic Sciences, National Autonomous University of Mexico (UNAM) 651.0x 99.91 GCF_003516125.1 4059 4277 4277 110 22 85 1 Cronobacter_sakazakii_homd_HMT_753 GCA_003516445.1 HMT-202 UBA8871 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum UBA8871 62 2331541 26.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/516/445/GCA_003516445.1_ASM351644v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA417962 68766 SAMN08019567 ASM351644v1 Scaffold CLC de novo assembler v. 4.4.1 2017-11-13T20:27:09.487 not applicable metagenome Illumina HiSeq 2000 University of Queensland 16.2x 93.26 0 95.63 0.05 GCF_003516445.1 DPCP01 2279 2330 2330 22 1 27 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_003522455.1 HMT-567 UBA10739 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae UBA10739 61 2229926 33.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/522/455/GCA_003522455.1_ASM352245v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA417962 29387 SAMN08018960 ASM352245v1 Scaffold CLC de novo assembler v. 4.4.1 2017-11-13T20:25:16.220 not applicable metagenome Illumina HiSeq 2000 University of Queensland 26.2x 92.88 0 94.07 0.01 GCF_003522455.1 DPFI01 2126 2206 2206 48 1 31 0 Staphylococcus_caprae_homd_HMT_567 GCA_003538675.1 HMT-584 UBA8850 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola UBA8850 25 2710007 38.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/538/675/GCA_003538675.1_ASM353867v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA417962 166 SAMN08019191 ASM353867v1 Scaffold CLC de novo assembler v. 4.4.1 2017-11-13T20:25:20.130 not applicable metagenome Illumina HiSeq 2000 University of Queensland 49.0x 100 0 96.7 0.16 GCF_003538675.1 DPRO01 2447 2499 2499 10 0 41 1 Treponema_denticola_homd_HMT_584 GCA_003546465.1 HMT-571 ATCC 25416 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-571 Burkholderia cepacia ATCC 25416 4 8567011 66.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/546/465/GCA_003546465.1_ASM354646v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia cepacia PRJNA244016 983594 SAMN02795966 ASM354646v1 Complete Genome Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 44837; Phrap v. SPS - 4.24 2014-05-20T14:45:00.763 unknown Plant derived food stuff Illumina; 454 Los Alamos National Laboratory 280.0x 99.98 100 0.2 100 0.09 GCF_003546465.1 7735 7892 7892 59 18 79 1 Burkholderia_cepacia_homd_HMT_571 GCA_003546885.1 HMT-153 FDAARGOS_327 Named Cultivated Nasal (Abundance: Medium) HMT-153 Klebsiella aerogenes FDAARGOS_327 3 5400171 54.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/546/885/GCA_003546885.1_ASM354688v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella aerogenes PRJNA231221 548 SAMN06173340 ASM354688v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3.0 2016-12-21T16:19:38.020 USA:DC skin swab PacBio; Illumina US Food and Drug Administration 15.7x 98.73 100 0.96 100 0.78 GCF_003546885.1 5022 5267 5267 130 25 89 1 Klebsiella_aerogenes_homd_HMT_153 GCA_003570845.1 HMT-736 KCOM 1685 Named Cultivated Oral (Abundance: Medium) HMT-736 Dialister pneumosintes KCOM 1685 3 1247407 35.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/570/845/GCA_003570845.1_ASM357084v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Allisonella;s__Allisonella pneumosinta PRJNA484675 39950 SAMN09767654 ASM357084v1 Scaffold SPAdes v. 3.8.2 2018-08-06T03:14:05.440 South Korea: Gwangju Pericoronitis Illumina HiSeq Korean Collection for Oral Microbiology 4626.8x 96.11 0 99.38 0.44 GCF_003570845.1 QWKU01 1168 1249 1249 17 13 50 1 Dialister_pneumosintes_homd_HMT_736 GCA_003570855.1 HMT-576 KCOM 1039 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus KCOM 1039 2 1885802 37.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/570/855/GCA_003570855.1_ASM357085v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA485033 76860 SAMN09781071 ASM357085v1 Scaffold SPAdes v. 3.8.2 2018-08-08T04:16:05.610 South Korea: Gwangju Postoperative maxillary cyst Illumina HiSeq Korean Collection for Oral Microbiology 2258.9x 97.47 99 0.09 99.98 0.14 GCF_003570855.1 QWKV01 1794 1900 1900 36 10 59 1 Streptococcus_constellatus_homd_HMT_576 GCA_003571725.1 HMT-076 22.1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri 22.1 2 2541629 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/571/725/GCA_003571725.1_ASM357172v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA489795 1292 SAMN09989479 ASM357172v1 Complete Genome SPAdes v. 3.9.0; A5-miseq v. 20160825; Pilon v. 1.22 2018-09-07T08:11:05.425 Belarus: Minsk Laboratory contaminant Illumina MiSeq; Sanger Institute of Microbiology, Belarus National Academy of Sciences 340.0x 99.27 99.73 0 100 0.17 GCF_003571725.1 2434 2562 2562 46 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_003578345.1 HMT-567 SNUC 4023 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae SNUC 4023 141 2580743 33.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/578/345/GCA_003578345.1_ASM357834v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA342349 29380 SAMN06172864 ASM357834v1 Contig SPAdes v. 3.8.0 2016-12-21T14:04:04.270 Canada: Ontario Herd 211 Illumina MiSeq University of Calgary 40.0x 98.37 99.78 0 100 0 GCF_003578345.1 QXRK01 2428 2578 2578 79 9 61 1 Staphylococcus_caprae_homd_HMT_567 GCA_003578595.1 HMT-116 SNUC 1319 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis SNUC 1319 41 2404190 32.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/578/595/GCA_003578595.1_ASM357859v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA342349 29388 SAMN06172846 ASM357859v1 Contig SPAdes v. 3.8.0 2016-12-21T14:03:56.270 Canada: Ontario Herd 210 Illumina MiSeq University of Calgary 78.0x 98.84 99.81 0.08 99.99 0.07 GCF_003578595.1 QXRR01 2261 2382 2382 47 9 64 1 Staphylococcus_capitis_homd_HMT_116 GCA_003584215.1 HMT-161 KHUD_VP2 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula KHUD_VP2 16 2144191 38.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/584/215/GCA_003584215.1_ASM358421v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJNA488979 29466 SAMN09946803 ASM358421v1 Scaffold SPAdes v. 3.12.0 2018-09-03T03:37:05.981 South Korea: Seoul Illumina Kyung Hee University 942.5x 96.52 100 0 99.99 0.22 GCF_003584215.1 QYAA01 1917 1981 1981 20 4 39 1 Veillonella_parvula_homd_HMT_161 GCA_003584725.1 HMT-823 Kyoto-2 Named Cultivated Pathogen (Abundance: Scarce) HMT-823 Mycobacterium leprae Kyoto-2 1 3268122 57.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/584/725/GCA_003584725.1_ASM358472v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium leprae PRJNA65803 1008298 SAMD00011899 ASM358472v1 Complete Genome Velvet v. 1.0.1 2017-12-27T01:00:16.015 Illumina GAIIx; ABI 3130 Leprosy Research Center, National Institute of Infectious Diseases 500.0x 88.22 0.33 99.99 0.01 GCF_003584725.1 3963 4034 4034 21 3 46 1 Mycobacterium_leprae_homd_HMT_823 GCA_003589745.1 HMT-107 DSM 23576 = CCUG 58757 Named Cultivated Oral (Abundance: Medium) HMT-107 Lachnoanaerobaculum umeaense DSM 23576 = CCUG 58757 1 2810441 35.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/589/745/GCA_003589745.1_ASM358974v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum umeaense PRJNA490792 617123 SAMN10059125 ASM358974v1 Complete Genome RS HGAP v. 3.0; SPAdes v. 3.8.2 2018-09-14T00:58:05.970 Sweden: Umea biopsy from the small intestine of a child with coeliac disease PacBio; Illumina HiSeq Korean Collection for Oral Microbiology 714.7x 99.99 99.37 0 99.14 0.21 GCF_003589745.1 2570 2643 0 12 10 50 1 Lachnoanaerobaculum_umeaense_homd_HMT_107 GCA_003596365.3 HMT-120 VB19458 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus VB19458 1 2699210 32.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/596/365/GCA_003596365.3_ASM359636v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA490266 1283 SAMN10031556 ASM359636v3 Complete Genome CANU v. 1.7; UNICYCLER HYBRID v. 0.4.6 2018-09-11T06:48:05.126 India blood IonTorrent; Oxford Nanopore MiniION Christian Medical College 200.0x 99.31 99.62 0.19 99.99 0.76 GCF_003596365.3 2724 2907 2907 100 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_003598195.1 HMT-425 Spain939 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae Spain939 157 2365106 39.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/598/195/GCA_003598195.1_ASM359819v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA434586 257758 SAMN08564443 ASM359819v1 Contig CLC NGS Cell v. FEBRUARY-2018 2018-02-19T12:50:04.140 Spain Illumina MiSeq ITQB NOVA 152.0x 96.22 99.42 1.1 100 0.15 GCF_003598195.1 PTQV01 2324 2445 2445 70 4 46 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_003598205.1 HMT-425 Spain3473 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae Spain3473 153 2213215 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/598/205/GCA_003598205.1_ASM359820v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA434586 257758 SAMN08564444 ASM359820v1 Contig CLC NGS Cell v. FEBRUARY-2018 2018-02-19T13:00:04.603 Spain Illumina MiSeq ITQB NOVA 200.0x 96.19 99.82 1.05 100 0.03 GCF_003598205.1 PTTJ01 2149 2265 2265 69 3 43 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_003598235.1 HMT-425 EL2652N1 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae EL2652N1 158 2179576 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/598/235/GCA_003598235.1_ASM359823v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA434586 257758 SAMN08564447 ASM359823v1 Contig CLC NGS Cell v. FEBRUARY-2018 2018-02-19T13:05:05.760 Portugal: Montemor-o-Novo Illumina MiSeq ITQB NOVA 134.0x 96.7 99.87 0.2 99.99 0.16 GCF_003598235.1 PTTL01 2106 2229 2229 76 3 43 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_003599935.1 HMT-425 Spain9880 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae Spain9880 155 2222692 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/599/935/GCA_003599935.1_ASM359993v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA434586 257758 SAMN08564445 ASM359993v1 Contig CLC NGS Cell v. FEBRUARY-2018 2018-02-19T13:01:03.753 Spain Illumina MiSeq ITQB NOVA 101.0x 96.85 99.62 0.2 100 0.04 GCF_003599935.1 PTTK01 2159 2277 2277 67 4 46 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_003602765.1 HMT-161 AF36-20BH Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula AF36-20BH 22 2100446 38.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/602/765/GCA_003602765.1_ASM360276v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella hominis PRJNA482748 2293251 SAMN09734647 ASM360276v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:13.297 China: Shenzhen feces Illumina Hiseq BGI 100.0x 100 0 99.99 0.27 GCF_003602765.1 QTLR01 1908 1973 1973 22 5 37 1 Veillonella_parvula_homd_HMT_161 GCA_003603295.1 HMT-161 AF13-2 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula AF13-2 14 2023686 38.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/603/295/GCA_003603295.1_ASM360329v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJNA482748 2293250 SAMN09734232 ASM360329v1 Scaffold SOAPdenovo v. 2 2018-07-29T08:47:07.087 China: Shenzhen feces Illumina Hiseq BGI 100.0x 100 0 99.98 0.32 GCF_003603295.1 QTMT01 1825 1888 1888 22 3 37 1 Veillonella_parvula_homd_HMT_161 GCA_003603405.1 HMT-456 AM43-2AT Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis AM43-2AT 11 2064963 41.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/603/405/GCA_003603405.1_ASM360340v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA482748 2293247 SAMN09736564 ASM360340v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:11.163 China: Shenzhen feces Illumina Hiseq BGI 100.0x 100 0 100 0.08 GCF_003603405.1 QTND01 1955 2033 0 33 3 41 1 Streptococcus_ilei_homd_HMT_456 GCA_003603595.1 HMT-456 AM28-20 Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis AM28-20 6 2032489 41.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/603/595/GCA_003603595.1_ASM360359v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA482748 2293246 SAMN09736372 ASM360359v1 Scaffold SOAPdenovo v. 2 2018-07-30T02:31:08.140 China: Shenzhen feces Illumina Hiseq BGI 100.0x 99.83 0.34 99.99 0.12 GCF_003603595.1 QTNK01 1922 1997 0 33 3 38 1 Streptococcus_ilei_homd_HMT_456 GCA_003605455.1 HMT-425 Spain2270 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae Spain2270 150 2240983 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/605/455/GCA_003605455.1_ASM360545v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA434586 257758 SAMN10131018 ASM360545v1 Contig CLC NGS Cell v. MARCH-2018 2018-09-26T05:02:08.877 Spain Illumina MiSeq ITQB NOVA 100.0x 96.83 99.62 0.6 100 0.13 GCF_003605455.1 RAHZ01 2181 2298 2298 66 5 45 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_003605975.1 HMT-524 KHUD_V1 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica KHUD_V1 54 2189293 39.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/605/975/GCA_003605975.1_ASM360597v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA488979 39777 SAMN09946802 ASM360597v1 Scaffold SPAdes v. 3.12.0 2018-09-03T03:37:05.956 South Korea: Seoul Illumina Kyung Hee University 1082.5x 96.84 100 0.2 100 0.27 GCF_003605975.1 QXZZ01 1991 2058 2058 20 3 43 1 Veillonella_atypica_homd_HMT_524 GCA_003609775.1 HMT-469 GAI 07411 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica GAI 07411 3 3090326 40.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/609/775/GCA_003609775.1_ASM360977v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_A PRJDB5703 28132 SAMD00078755 ASM360977v1 Complete Genome HGAP v. 3 2017-09-02T01:00:30.256 Japan PacBio RSII Department of Pediatric Dentistry, Nagasaki University Graduate School of Biomedical Sciences 246.0x 90.71 99.32 0.34 99.87 0.08 GCF_003609775.1 2407 2480 2480 8 12 52 1 Prevotella_melaninogenica_homd_HMT_469 GCA_003612915.1 HMT-104 CCUG 32053 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-104 Paracoccus yeei CCUG 32053 9 4668852 67.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/612/915/GCA_003612915.1_ASM361291v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus yeei PRJNA480219 147645 SAMN09630968 ASM361291v1 Complete Genome Canu v. 1.6; Racon v. 0.5.0; Nebler De Novo Assembler v. 3.0; SPAdes v. 3.11.1 2018-07-09T09:35:05.877 USA: Missouri eye Illumina; MinION University of Warsaw, Faculty of Biology, Institute of Microbiology 151.0x 98.35 99.62 0.1 100 0.22 GCF_003612915.1 4545 4643 4643 27 9 61 1 Paracoccus_yeei_homd_HMT_104 GCA_003625535.1 HMT-833 COPD_M127 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M127 22 1913827 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/625/535/GCA_003625535.1_ASM362553v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947558 ASM362553v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.500 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 9.0x 99.2 99.73 0.27 100 0.01 GCF_003625535.1 QZGK01 1736 1794 1794 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003625545.1 HMT-833 COPD_M118 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M118 21 1868250 41.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/625/545/GCA_003625545.1_ASM362554v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947555 ASM362554v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.450 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 25.0x 99.2 99.45 0.27 100 0.01 GCF_003625545.1 QZGN01 1699 1758 1758 8 6 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003625605.1 HMT-833 COPD_M100 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M100 23 1969349 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/625/605/GCA_003625605.1_ASM362560v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947548 ASM362560v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.326 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 39.0x 99.16 99.72 0.3 100 0.01 GCF_003625605.1 QZGU01 1819 1876 1876 8 3 45 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003625615.1 HMT-833 COPD_M97 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M97 21 1969852 41.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/625/615/GCA_003625615.1_ASM362561v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947547 ASM362561v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.306 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 20.0x 99.16 99.72 0.28 100 0.01 GCF_003625615.1 QZGV01 1822 1879 1879 8 3 45 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003625665.1 HMT-833 COPD_M70 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M70 37 1932872 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/625/665/GCA_003625665.1_ASM362566v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947539 ASM362566v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.143 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 25.0x 99.12 99.73 0.27 100 0.02 GCF_003625665.1 QZHD01 1754 1813 1813 10 3 45 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003625775.1 HMT-833 COPD_M19 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M19 26 1955970 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/625/775/GCA_003625775.1_ASM362577v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947520 ASM362577v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:09.696 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 29.0x 99.15 100 0.27 100 0.02 GCF_003625775.1 QZHW01 1793 1849 1849 8 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003625785.1 HMT-833 COPD_M16 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M16 36 1904835 41.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/625/785/GCA_003625785.1_ASM362578v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947519 ASM362578v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:09.680 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 23.0x 99.14 99.73 0.41 100 0.01 GCF_003625785.1 QZHX01 1745 1802 1802 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003625805.1 HMT-833 COPD_M10 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M10 29 1911462 41.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/625/805/GCA_003625805.1_ASM362580v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947518 ASM362580v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:09.660 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 13.0x 99.1 99.45 0.41 100 0.02 GCF_003625805.1 QZHY01 1754 1812 1812 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003625895.1 HMT-833 COPD_M1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M1 24 1844646 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/625/895/GCA_003625895.1_ASM362589v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947514 ASM362589v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:09.590 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 20.0x 99.17 99.45 0.27 100 0 GCF_003625895.1 QZIC01 1667 1723 1723 9 3 43 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003625935.1 HMT-833 COPD_M130 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M130 26 1880933 41.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/625/935/GCA_003625935.1_ASM362593v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947559 ASM362593v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.520 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 13.0x 99.16 100 0.28 99.99 0 GCF_003625935.1 QZGJ01 1711 1769 1769 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626005.1 HMT-833 COPD_M112 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M112 27 1967181 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/005/GCA_003626005.1_ASM362600v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947553 ASM362600v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.413 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 47.0x 95.84 99.45 0.27 100 0.21 GCF_003626005.1 QZGP01 1764 1821 1821 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626055.1 HMT-833 COPD_M106 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M106 24 1953139 41.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/055/GCA_003626055.1_ASM362605v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947550 ASM362605v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.363 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 16.0x 99.07 100 0.27 100 0.01 GCF_003626055.1 QZGS01 1786 1844 1844 9 3 45 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626105.1 HMT-833 COPD_M85 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M85 20 1857468 41.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/105/GCA_003626105.1_ASM362610v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947544 ASM362610v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.253 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 23.0x 99.21 100 0.28 100 0.01 GCF_003626105.1 QZGY01 1681 1739 1739 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626115.1 HMT-833 COPD_M88 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M88 36 1970293 41.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/115/GCA_003626115.1_ASM362611v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947545 ASM362611v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.270 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 16.0x 95.84 99.45 0.27 100 0.61 GCF_003626115.1 QZGX01 1763 1819 1819 9 3 43 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626155.1 HMT-833 COPD_M82 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M82 27 1954148 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/155/GCA_003626155.1_ASM362615v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947543 ASM362615v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.236 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 20.0x 99.16 100 0.27 100 0.02 GCF_003626155.1 QZGZ01 1791 1848 1848 8 3 45 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626185.1 HMT-833 COPD_M76 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M76 20 1953749 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/185/GCA_003626185.1_ASM362618v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947541 ASM362618v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.196 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 27.0x 99.16 100 0.27 100 0.02 GCF_003626185.1 QZHB01 1793 1849 1849 8 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626215.1 HMT-833 COPD_M73 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M73 27 1953245 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/215/GCA_003626215.1_ASM362621v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947540 ASM362621v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.170 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 18.0x 99.16 100 0.27 100 0.03 GCF_003626215.1 QZHC01 1789 1845 1845 8 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626235.1 HMT-833 COPD_M67 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M67 37 1937011 41.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/235/GCA_003626235.1_ASM362623v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947538 ASM362623v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:10.080 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 22.0x 99.11 99.73 0.27 100 0.02 GCF_003626235.1 QZHE01 1764 1822 1822 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626305.1 HMT-833 COPD_M52 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M52 13 1830233 41.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/305/GCA_003626305.1_ASM362630v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947533 ASM362630v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:09.963 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 35.0x 99.2 100 0.27 100 0 GCF_003626305.1 QZHJ01 1658 1713 1713 7 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626335.1 HMT-833 COPD_M49 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M49 20 1930767 41.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/335/GCA_003626335.1_ASM362633v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947532 ASM362633v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:09.943 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 25.0x 95.8 99.45 0.27 100 0.15 GCF_003626335.1 QZHK01 1731 1791 1791 9 6 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626355.1 HMT-833 COPD_M47 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M47 28 1883800 41.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/355/GCA_003626355.1_ASM362635v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947531 ASM362635v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:09.926 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 24.0x 99.19 99.73 0.27 100 0.16 GCF_003626355.1 QZHL01 1711 1769 1769 9 3 45 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626375.1 HMT-833 COPD_M46 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M46 33 1882190 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/375/GCA_003626375.1_ASM362637v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947530 ASM362637v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:09.906 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 22.0x 99.19 99.73 0.27 100 0.01 GCF_003626375.1 QZHM01 1715 1772 1772 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003626415.1 HMT-833 COPD_M40 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis COPD_M40 31 1883417 41.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/415/GCA_003626415.1_ASM362641v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA488991 480 SAMN09947528 ASM362641v1 Contig SPAdes v. 3.9.0 2018-09-03T08:00:09.870 United Kingdom: Leicester sputum Illumina MiSeq University of Leicester 29.0x 99.19 99.73 0.27 100 0.01 GCF_003626415.1 QZHO01 1714 1771 1771 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003627135.1 HMT-456 JS71 Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis JS71 1 2009598 42.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/627/135/GCA_003627135.1_ASM362713v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA493533 2382163 SAMN10135881 ASM362713v1 Complete Genome RS HGAP v. 3.0; SPAdes v. 3.8.2 2018-09-27T03:29:24.000 Korea: Gwangju subgingival plaque PacBio; Illumina HiSeq Korean Collection for Oral Microbiology 1260.0x 99.83 0.18 99.99 0.03 GCF_003627135.1 1866 1973 0 33 12 61 1 Streptococcus_ilei_homd_HMT_456 GCA_003627295.1 HMT-883 ZFM222 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-883 Lactiplantibacillus pentosus ZFM222 5 3701596 46.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/627/295/GCA_003627295.1_ASM362729v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus PRJNA392597 1589 SAMN07303442 ASM362729v1 Complete Genome SMRT Analysis v. v2.2.0; Celera Assembler v. 8.3; GATK v. v1.6-13 2017-06-30T08:16:03.936 China:Tangbiao village Lanxi t Fermented vegetables PacBio RSII; Illumina HiSeq Zhejiang Gongshang University 48.0x 98.11 99.38 2.78 100 1.07 GCF_003627295.1 3315 3397 0 0 16 65 1 Lactiplantibacillus_pentosus_homd_HMT_883 GCA_003627355.1 HMT-861 ZFM4 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-861 Lactiplantibacillus plantarum ZFM4 4 3303780 44.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/627/355/GCA_003627355.1_ASM362735v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum PRJNA392545 1590 SAMN07303049 ASM362735v1 Complete Genome GATK v. v1.6-13; Celera Assembler v. 8.3; SMRT Analysis v. v2.2.0 2017-06-30T05:11:03.370 China:Zhejiang maternal and ch healthy infant fecal samples PacBio RSII; Illumina HiSeq Zhejiang Gongshang University 46.0x 99.1 99.38 2.78 100 0.78 GCF_003627355.1 3159 3287 3287 44 16 67 1 Lactiplantibacillus_plantarum_homd_HMT_861 GCA_003634765.1 HMT-186 AG790 Unnamed Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-186 Microbacterium sp. HMT-186 AG790 14 3144229 69.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/634/765/GCA_003634765.1_ASM363476v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium sp000411455 PRJNA456351 2183995 SAMN09083411 ASM363476v1 Scaffold SPAdes v. 3.10.1 2018-05-07T15:18:48.490 Italy missing Illumina HiSeq DOE Joint Genome Institute 251.0x 99.49 0.51 100 0 GCF_003634765.1 RBWZ01 2908 2970 2970 9 3 49 1 Microbacterium_sp_HMT_186_homd_HMT_186 GCA_003638725.1 HMT-498 bin_23 Unnamed Cultivated Oral (Abundance: Medium) HMT-498 Leptotrichia sp. HMT-498 bin_23 138 1129771 yes 29.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/638/725/GCA_003638725.1_ASM363872v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia sp002240055 PRJNA383868 104608 SAMN10134573 ASM363872v1 Contig metaSPAdes v. 3.9.0 2018-09-26T17:53:04.627 Australia supragingival plaque isolated from 88 juvenile twins Illumina NextSeq 500 J. Craig Venter Institute 8.3x 68.13 1.72 71.47 1.13 RBKD01 1022 1046 1046 14 0 9 1 Leptotrichia_sp_HMT_498_homd_HMT_498 GCA_003639045.1 HMT-178 bin_1 Named Cultivated Oral (Abundance: Low) HMT-178 Schaalia hongkongensis bin_1 159 1799133 yes 71.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/639/045/GCA_003639045.1_ASM363904v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia hongkongensis PRJNA383868 29317 SAMN10134551 ASM363904v1 Contig metaSPAdes v. 3.9.0 2018-09-26T17:53:04.230 Australia supragingival plaque isolated from 88 juvenile twins Illumina NextSeq 500 J. Craig Venter Institute 11.2x 74.29 4.44 70.55 3.63 RBJH01 1519 1548 1548 6 0 23 0 Schaalia_hongkongensis_homd_HMT_178 GCA_003640305.1 HMT-288 bin_27 Named Cultivated Oral (Abundance: Medium) HMT-288 Segatella oulorum bin_27 246 2201265 yes 48.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/640/305/GCA_003640305.1_ASM364030v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oulorum PRJNA383868 59823 SAMN10134577 ASM364030v1 Contig metaSPAdes v. 3.9.0 2018-09-26T17:53:04.693 Australia supragingival plaque isolated from 88 juvenile twins Illumina NextSeq 500 J. Craig Venter Institute 8.4x 94.64 1.16 87.98 1.98 GCF_003640305.1 RBKH01 1790 1830 1830 9 1 29 1 Segatella_oulorum_homd_HMT_288 GCA_003641165.1 HMT-861 DSM 16365 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-861 Lactiplantibacillus plantarum DSM 16365 6 3350338 44.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/641/165/GCA_003641165.1_ASM364116v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum PRJNA494615 271881 SAMN10174878 ASM364116v1 Complete Genome PacBio SMRT Analysis v. v2.3 2018-10-04T00:28:03.360 Nigeria fermented cassava roots (fufu) PacBio Korea University 309.0x 99.98 99.38 2.78 100 0.77 GCF_003641165.1 3184 3285 0 0 16 84 1 Lactiplantibacillus_plantarum_homd_HMT_861 GCA_003641185.1 HMT-883 DSM 20314 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-883 Lactiplantibacillus pentosus DSM 20314 2 3671373 46.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/641/185/GCA_003641185.1_ASM364118v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus PRJNA494616 1589 SAMN10174879 ASM364118v1 Complete Genome PacBio SMRT Analysis v. v2.3 2018-10-04T00:35:03.826 Unknown missing PacBio Korea University 319.4x 99.99 99.38 2.16 100 0.92 GCF_003641185.1 3308 3441 3441 43 16 73 1 Lactiplantibacillus_pentosus_homd_HMT_883 GCA_003641225.1 HMT-801 EC-369 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-801 Enterococcus casseliflavus EC-369 2 3668336 42.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/641/225/GCA_003641225.1_ASM364122v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D;s__Enterococcus_D casseliflavus PRJNA494612 37734 SAMN10174870 ASM364122v1 Complete Genome HGAP v. v.3 2018-10-03T23:15:07.410 China: Zhejiang PacBio wenzhou medical university 50.0x 98.51 99.25 0.39 100 0.46 GCF_003641225.1 3443 3583 3583 61 15 63 1 Enterococcus_casseliflavus_homd_HMT_801 GCA_003667225.1 HMT-197 TA68 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-197 Kocuria rhizophila TA68 195 2701536 70.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/667/225/GCA_003667225.1_ASM366722v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria rhizophila PRJNA495744 72000 SAMN10230831 ASM366722v1 Contig SPAdes v. 3.11 2018-10-11T08:51:05.620 Hungary: Soroksar river (tribu rhizosphere of Typha angustiflora Illumina MiSeq Institute of Pharmacy and Molecular Biotechnology 36.0x 98.03 0 99.99 0.22 GCF_003667225.1 RCOM01 2308 2384 2384 21 5 49 1 Kocuria_rhizophila_homd_HMT_197 GCA_003688935.1 HMT-050 CCUG 32361 Named Cultivated Nasal (Abundance: Low) HMT-050 Corynebacterium macginleyi CCUG 32361 56 2419073 57.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/688/935/GCA_003688935.1_ASM368893v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macginleyi PRJNA496056 38290 SAMN10236834 ASM368893v1 Contig SPAdes v. 3.9.0 2018-10-12T15:42:03.797 France: Sarrebourg corneal ulcer Illumina MiSeq National Microbiology Laboratory 96.0x 99.99 99.78 0 100 0.03 GCF_003688935.1 REGE01 2367 2434 2434 7 6 53 1 Corynebacterium_macginleyi_homd_HMT_050 GCA_003688955.1 HMT-050 NML 120205 Named Cultivated Nasal (Abundance: Low) HMT-050 Corynebacterium macginleyi NML 120205 40 2349818 57.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/688/955/GCA_003688955.1_ASM368895v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macginleyi PRJNA496056 38290 SAMN10236836 ASM368895v1 Contig SPAdes v. 3.9.0 2018-10-12T15:42:03.830 Canada: Vancouver eye infection Illumina MiSeq National Microbiology Laboratory 109.0x 98.87 99.78 0 99.99 0.37 GCF_003688955.1 REGC01 2260 2328 2328 7 7 53 1 Corynebacterium_macginleyi_homd_HMT_050 GCA_003691405.1 HMT-076 SWO Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri SWO 4 2572660 32.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/691/405/GCA_003691405.1_ASM369140v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA497162 1292 SAMN10250190 ASM369140v1 Complete Genome Celera Assembler v. 8.3 2018-10-16T23:17:05.540 China:Nei Mongol condensation water of the Shenzhou-10 spacecraft PacBio RSII Chinese PLA General Hospital 553.0x 99.62 99.73 0 100 0.06 GCF_003691405.1 2509 2641 2641 53 16 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_003691465.1 HMT-344 LTJR-52 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-344 Pseudomonas luteola LTJR-52 1 5539211 55.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/691/465/GCA_003691465.1_ASM369146v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B;s__Pseudomonas_B luteola PRJNA495108 2479392 SAMN10255221 ASM369146v1 Complete Genome SPAdes v. 3.12.0 2018-10-17T22:17:04.143 China: Xinjiang Province Illumina HiSeq Hong Kong University of Science and Technology 500.0x 99.62 1.41 100 0.1 GCF_003691465.1 5153 5301 5301 56 21 70 1 Pseudomonas_luteola_homd_HMT_344 GCA_003691635.1 HMT-641 P602-8883 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P602-8883 1 1843353 38.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/691/635/GCA_003691635.1_ASM369163v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA282520 727 SAMN07421879 ASM369163v1 Chromosome HGAP v. 2.3.0 2017-07-28T08:56:05.980 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 115.0x 97.04 99.67 0.8 100 0.54 GCF_003691635.1 1725 1836 1836 32 20 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_003691655.1 HMT-641 P657-8759 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae P657-8759 1 1849398 38.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/691/655/GCA_003691655.1_ASM369165v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_I PRJNA282520 727 SAMN07421933 ASM369165v1 Chromosome HGAP v. 2.3.0 2017-07-28T08:56:06.836 Spain:Catalunya sputum PacBio RSII Institute of Agrobiotechnology 171.0x 97.08 99.56 0.58 100 0.48 GCF_003691655.1 1727 1840 1840 33 20 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_003691695.1 HMT-686 LAB761 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans LAB761 1 2076490 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/691/695/GCA_003691695.1_ASM369169v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA497888 1309 SAMN10268792 ASM369169v1 Complete Genome MUGQIC PacBio v. July 13, 2017 2018-10-22T14:21:03.683 Canada: Faculty of Dentistry, Oral cavity PacBio RSII University of Toronto 246.0x 99.29 99.5 0 100 0.89 GCF_003691695.1 2006 2127 2127 40 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_003693265.1 HMT-207 DSM 103494 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense DSM 103494 164 2623280 65.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/693/265/GCA_003693265.1_ASM369326v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA497573 2041036 SAMN10261082 ASM369326v1 Contig SPAdes v. 3.9.0 2018-10-19T11:00:02.873 Germany: Gottingen blood Illumina MiSeq National Microbiology Laboratory 75.0x 98.46 4.09 99.99 4.11 GCF_003693265.1 RDRE01 2370 2440 2440 9 5 55 1 Corynebacterium_gottingense_homd_HMT_207 GCA_003697165.2 HMT-574 ATCC 11775 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-574 Escherichia coli ATCC 11775 2 5034834 50.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/697/165/GCA_003697165.2_ASM369716v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli PRJNA472652 866789 SAMN10252913 ASM369716v2 Complete Genome Unicycler v. v0.4.5 2018-10-17T13:18:03.363 N/A Oxford Nanopore MiniION University of Arkansas for Medical Sciences 800.0x 99.98 99.97 0.39 100 1.26 GCF_003697165.2 4708 5057 5057 238 22 88 1 Escherichia_coli_homd_HMT_574 GCA_003703745.1 HMT-545 HK83 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus HK83 121 2375403 42.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/703/745/GCA_003703745.1_ASM370374v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJNA475894 732 SAMN09405372 ASM370374v1 Contig SPAdes v. 3.9 2018-06-13T09:19:03.643 Denmark saliva Illumina NextSeq 500 Umea University 100.0x 96.06 99.55 0.73 100 0.32 GCF_003703745.1 QMGS01 2120 2234 2234 53 11 49 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_003704055.1 HMT-607 MF-I1 Named Cultivated Oral (Abundance: Scarce) HMT-607 Mycoplasmopsis fermentans MF-I1 48 928572 26.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/704/055/GCA_003704055.1_ASM370405v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis;s__Mycoplasmopsis fermentans PRJNA205184 1337387 SAMN07730986 ASM370405v1 Contig Newbler v. 1.1.03.24 2017-10-02T11:45:03.910 USA HIV infected cell supernatant 454 FLX IGS 75.0x 99.1 100 0 98.36 1.79 GCF_003704055.1 ATFG01 1626 1672 1672 5 4 36 1 Mycoplasmopsis_fermentans_homd_HMT_607 GCA_003704075.1 HMT-607 MF-I2 Named Cultivated Oral (Abundance: Scarce) HMT-607 Mycoplasmopsis fermentans MF-I2 46 921097 26.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/704/075/GCA_003704075.1_ASM370407v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis;s__Mycoplasmopsis fermentans PRJNA205185 1337388 SAMN07730985 ASM370407v1 Contig Newbler v. 1.1.03.24 2017-10-02T11:45:02.873 USA HIV infected cell supernatant 454 FLX IGS 45.0x 99.16 100 0 99.36 0.56 GCF_003704075.1 ATFH01 1589 1635 1635 5 4 36 1 Mycoplasmopsis_fermentans_homd_HMT_607 GCA_003732505.1 HMT-690 F1291 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1291 1 2135983 35.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/732/505/GCA_003732505.1_ASM373250v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA354964 143387 SAMN06055349 ASM373250v1 Complete Genome HGAP v. 2 2016-11-25T17:49:04.536 Denmark blood PacBio Aarhus University 281.0x 99.8 100 0 100 0.03 GCF_003732505.1 2010 2095 2095 16 17 51 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_003732525.1 HMT-690 F1260 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum F1260 1 2288480 35.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/732/525/GCA_003732525.1_ASM373252v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA354964 143387 SAMN06234847 ASM373252v1 Complete Genome HGAP v. 3 2017-01-17T06:25:05.283 Denmark blood PacBio Aarhus University 300.0x 98.6 100 0 100 0.17 GCF_003732525.1 2251 2339 2339 20 17 50 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_003755025.1 HMT-209 DSM 15985 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus DSM 15985 16 3654005 66.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/755/025/GCA_003755025.1_ASM375502v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA500344 164759 SAMN10362780 ASM375502v1 Contig SPAdes v. 3.11.0 2018-11-01T21:17:23.800 missing missing Illumina HiSeq DOE Joint Genome Institute 410.0x 99.9 0.15 100 0.05 GCF_003755025.1 RJVL01 3350 3427 3427 20 3 53 1 Acidovorax_ebreus_homd_HMT_209 GCA_003789135.1 HMT-865 OT2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-865 Kluyvera ascorbata OT2 227 5368186 53.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/789/135/GCA_003789135.1_ASM378913v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera;s__Kluyvera ascorbata PRJNA497745 51288 SAMN10265530 ASM378913v1 Contig SPAdes v. 3.12.0 2018-10-21T18:26:05.410 Brazil:Porto Alegre abdominal collection Illumina MiSeq UNIVERSIDADE FEDERAL DE CIENCIAS DA SAUDE DE PORTO ALEGRE 50.0x 98.02 99.23 1.22 100 0.08 GCF_003789135.1 RHFN01 5040 5278 5278 145 10 82 1 Kluyvera_ascorbata_homd_HMT_865 GCA_003797385.1 HMT-739 FDAARGOS_578 Named Cultivated Oral (Abundance: Medium) HMT-739 Arachnia propionica FDAARGOS_578 1 3467615 66.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/797/385/GCA_003797385.1_ASM379738v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia propionica PRJNA231221 1750 SAMN10228558 ASM379738v1 Contig SMRT v. 2.3.0, HGAP v. 3.0 2018-10-10T13:50:05.096 Unknown Human oral cavity PacBio; Illumina US Food and Drug Administration 933.0x 99 97.47 1.22 100 0.13 GCF_003797385.1 RKKA01 3065 3145 3145 21 6 52 1 Arachnia_propionica_homd_HMT_739 GCA_003798325.1 HMT-191 FDAARGOS_576 Named Cultivated Oral (Abundance: Scarce) HMT-191 Propionibacterium acidifaciens FDAARGOS_576 1 3072768 70.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/798/325/GCA_003798325.1_ASM379832v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionibacterium;s__Propionibacterium acidifaciens PRJNA231221 556499 SAMN10228556 ASM379832v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3.0 2018-10-10T13:50:04.993 Unknown Subgingival plaque PacBio; Illumina US Food and Drug Administration 11.6x 99.25 98.46 0.33 100 0.37 GCF_003798325.1 2560 2639 2639 23 6 49 1 Propionibacterium_acidifaciens_homd_HMT_191 GCA_003798405.1 HMT-827 FDAARGOS_582 Named Cultivated Pathogen (Abundance: Scarce) HMT-827 Yersinia pestis FDAARGOS_582 2 4832460 47.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/798/405/GCA_003798405.1_ASM379840v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;s__Yersinia pestis PRJNA231221 633 SAMN10228562 ASM379840v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3.0 2018-10-10T13:50:05.176 France BEI Isolate PacBio; Illumina US Food and Drug Administration 16.1x 99.6 99.87 0.6 100 0.23 GCF_003798405.1 4212 4518 4518 201 22 82 1 Yersinia_pestis_homd_HMT_827 GCA_003798465.1 HMT-530 FDAARGOS_577 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes FDAARGOS_577 1 2495332 60.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/798/465/GCA_003798465.1_ASM379846v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA231221 1747 SAMN10228557 ASM379846v1 Complete Genome Canu v. 1.7 2018-10-10T13:50:05.063 Unknown Normal skin of the right arm PacBio; Illumina US Food and Drug Administration 36.6x 99.74 98.94 0.03 100 0.13 GCF_003798465.1 2312 2392 2392 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_003812425.1 HMT-601 FDAARGOS_529 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis FDAARGOS_529 3 2577406 32.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/812/425/GCA_003812425.1_ASM381242v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA231221 1282 SAMN10163224 ASM381242v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3.0, SPAdes v. 3.6.0 2018-10-02T12:23:10.520 not applicable CVP line blood PacBio; Illumina US Food and Drug Administration 19.5x 97.18 99.67 0 100 0.17 GCF_003812425.1 2377 2546 2546 88 19 61 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_003812505.1 HMT-127 FDAARGOS_575 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis FDAARGOS_575 3 2257431 31.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/812/505/GCA_003812505.1_ASM381250v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA231221 1290 SAMN10163251 ASM381250v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3.0 2018-10-02T12:23:11.100 not applicable clinical isolate PacBio; Illumina US Food and Drug Administration 19.6x 99.99 99.24 0.02 99.99 0.06 GCF_003812505.1 2166 2301 2301 53 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_003812785.1 HMT-530 FDAARGOS_503 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes FDAARGOS_503 1 2494539 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/812/785/GCA_003812785.1_ASM381278v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA231221 1747 SAMN10163179 ASM381278v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3.0 2018-10-02T12:23:09.680 Unknown UCC isolate PacBio; Illumina US Food and Drug Administration 12.5x 99.97 99.43 0.03 100 0.11 GCF_003812785.1 2306 2386 2386 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_003812825.1 HMT-690 FDAARGOS_565 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum FDAARGOS_565 1 2678402 34.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/812/825/GCA_003812825.1_ASM381282v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA231221 859 SAMN10163189 ASM381282v1 Complete Genome Canu v. 1.2 2018-10-02T12:23:09.856 Unknown environmental PacBio; Illumina US Food and Drug Administration 24.3x 99.96 100 0 100 0.71 GCF_003812825.1 2345 2420 2420 15 18 41 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_003813165.1 HMT-558 LMT1-73 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-558 Levilactobacillus brevis LMT1-73 3 2529623 45.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/813/165/GCA_003813165.1_ASM381316v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis PRJNA505393 1580 SAMN10417161 ASM381316v1 Complete Genome SOAPdenovo v. August-2018 2018-11-14T02:11:03.236 South Korea kimchi PacBio RSII Medytox 383.0x 99.02 99.06 0 99.98 0.11 GCF_003813165.1 2418 2527 2527 28 15 65 1 Levilactobacillus_brevis_homd_HMT_558 GCA_003838285.1 HMT-643 ATCC 15032 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia ATCC 15032 58 2848426 43.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/838/285/GCA_003838285.1_ASM383828v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA488694 28131 SAMN09939779 ASM383828v1 Scaffold A5 Assembly Pipeline A5-miseq v. 20140604 2018-08-31T02:57:04.543 missing Illumina Kyung Hee University 879.0x 96.45 99.32 0 99.99 0.22 GCF_003838285.1 QXEM01 2442 2505 2505 13 4 45 1 Prevotella_intermedia_homd_HMT_643 GCA_003850105.1 HMT-076 UGA3 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri UGA3 25 2466813 32.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/850/105/GCA_003850105.1_ASM385010v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri_A PRJNA407975 1292 SAMN07671984 ASM385010v1 Contig Velvet v. 1.2.08 2017-09-19T17:05:05.940 Kenya blood Illumina HiSeq Los Alamos National Laboratory 738.0x 94.06 99.73 0.75 100 1.56 GCF_003850105.1 NWUB01 2437 2557 2557 54 7 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_003855615.1 HMT-676 PmBC1123 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-676 Proteus mirabilis PmBC1123 1 4074828 39.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/855/615/GCA_003855615.1_ASM385561v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus;s__Proteus mirabilis PRJNA506335 584 SAMN10458127 ASM385561v1 Complete Genome SMRT portal v. 3.2.0 2018-11-21T03:39:05.020 China: Mianyang swine Illumina HiSeq; PacBio RSII Sichuan University 100.0x 96.79 100 0 100 0.71 GCF_003855615.1 3639 3816 3816 73 22 81 1 Proteus_mirabilis_homd_HMT_676 GCA_003856395.1 HMT-601 CDC120 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis CDC120 4 2571738 32.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/856/395/GCA_003856395.1_ASM385639v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA506796 1282 SAMN10473910 ASM385639v1 Complete Genome HGAP v. 3 2018-11-24T22:30:03.480 South Korea: Seoul skin PacBio RSII; Illumina HiSeq Chonbuk National University 281.0x 99.33 99.25 0.02 99.98 0.52 GCF_003856395.1 2347 2515 2515 88 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_003856455.1 HMT-601 CDC121 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis CDC121 3 2571939 32.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/856/455/GCA_003856455.1_ASM385645v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA506797 1282 SAMN10473924 ASM385645v1 Complete Genome HGAP v. 3 2018-11-24T22:41:02.673 South Korea: Seoul skin PacBio RSII; Illumina HiSeq Chonbuk National University 263.0x 99.32 99.81 0.02 99.99 0.54 GCF_003856455.1 2352 2518 2518 86 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_003857115.1 HMT-116 C0756 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis C0756 27 2502825 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/857/115/GCA_003857115.1_ASM385711v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA450155 29388 SAMN08931093 ASM385711v1 Scaffold CLC Genomic Workbench v. 11 2018-04-13T23:27:04.493 Australia: Brisbane Anterior Nose Illumina HiSeq The University of Queensland 150.0x 98.9 99.81 0.5 99.99 0.3 GCF_003857115.1 RCTN01 2380 2489 2489 51 2 55 1 Staphylococcus_capitis_homd_HMT_116 GCA_003857145.1 HMT-116 C2784 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis C2784 34 2502435 32.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/857/145/GCA_003857145.1_ASM385714v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA450155 29388 SAMN08931095 ASM385714v1 Scaffold CLC Genomic Workbench v. 11 2018-04-13T23:33:04.356 Australia: Brisbane Anterior Nose Illumina HiSeq The University of Queensland 150.0x 98.9 99.81 0.36 100 0.29 GCF_003857145.1 RCTS01 2396 2514 2514 55 4 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_003857195.1 HMT-076 C2796 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri C2796 34 2538946 32.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/857/195/GCA_003857195.1_ASM385719v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA450155 1292 SAMN08931113 ASM385719v1 Scaffold CLC Genomic Workbench v. 11 2018-04-13T23:48:04.480 Australia: Brisbane Middle meatus Illumina HiSeq The University of Queensland 150.0x 99.57 99.73 0.06 100 0.09 GCF_003857195.1 RCTT01 2443 2549 2549 50 4 51 1 Staphylococcus_warneri_homd_HMT_076 GCA_003858565.1 HMT-758 OH953 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis OH953 59 2476917 42.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/858/565/GCA_003858565.1_ASM385856v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_P PRJNA506243 1305 SAMN10478698 ASM385856v1 Contig A5-miseq v. 20150331 2018-11-26T15:20:04.993 United Kingdom: Leicestershire dog mouth Illumina MiSeq UC Davis 712.0x 95.19 100 0.19 100 0.11 GCF_003858565.1 RQZI01 2381 2471 2471 33 5 51 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003859865.1 HMT-748 OH2158 Named Cultivated Oral (Abundance: Medium) HMT-748 Campylobacter rectus OH2158 91 2491340 44.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/859/865/GCA_003859865.1_ASM385986v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A rectus PRJNA506243 203 SAMN10478675 ASM385986v1 Contig A5-miseq v. 20150331 2018-11-26T15:20:04.620 United Kingdom: Leicestershire dog mouth Illumina MiSeq UC Davis 16.0x 96.94 99.13 0.45 99.85 0.07 GCF_003859865.1 RQYP01 2229 2280 2280 5 2 43 1 Campylobacter_rectus_homd_HMT_748 GCA_003860565.1 HMT-422 NRS-1 Named NVP Uncultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-422 Cloacibacterium normanense NRS-1 1 2759562 33.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/860/565/GCA_003860565.1_ASM386056v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Cloacibacterium;s__Cloacibacterium normanense PRJNA498697 237258 SAMN05731713 ASM386056v1 Complete Genome HGAP v. 3 2016-09-06T12:13:02.466 USA: Norman, OK Untreated municipal wastewater PacBio Bacterial Special Pathogens Branch (CDC) 201.2x 99.99 100 0.25 99.97 0.07 GCF_003860565.1 2541 2617 2617 30 6 39 1 Cloacibacterium_normanense_homd_HMT_422 GCA_003861325.1 HMT-643 ATCC 15033 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia ATCC 15033 58 2849281 43.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/861/325/GCA_003861325.1_ASM386132v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA488694 28131 SAMN09939780 ASM386132v1 Scaffold A5 Assembly Pipeline A5-miseq v. 20140604 2018-08-31T02:57:04.567 missing Illumina Kyung Hee University 846.0x 96.47 99.32 0 99.99 0.23 GCF_003861325.1 QXEN01 2448 2513 2513 14 5 45 1 Prevotella_intermedia_homd_HMT_643 GCA_003862255.1 HMT-619 381OKJP Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 381OKJP 127 2325530 48.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/862/255/GCA_003862255.1_ASM386225v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA475798 837 SAMN09403941 ASM386225v1 Contig A5-MiSeq v. 20160826 2018-06-12T16:33:02.833 Japan: Okayama parent strain 381 obtained from the Socransky collection and maintained in lab c Illumina MiSeq Rutgers School of Dental Medicine 75.9x 98.48 99.92 0 99.99 0.04 GCF_003862255.1 QPGS01 1976 2045 2045 14 7 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_003862475.1 HMT-460 KCOM 2030 Named NVP Cultivated Oral (Abundance: Low) HMT-460 Lachnoanaerobaculum gingivalis KCOM 2030 12 3097953 35.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/862/475/GCA_003862475.1_ASM386247v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum gingivalis PRJNA506507 2490855 SAMN10461966 ASM386247v1 Contig SPAdes v. 3.8.2 2018-11-22T02:16:13.933 South Korea: Gwangju Subgingival dental plaque Illumina HiSeq Korean Collection for Oral Microbiology 1251.6x 99.37 0 99 0 GCF_003862475.1 RRCO01 2824 2907 0 22 10 50 1 Lachnoanaerobaculum_gingivalis_homd_HMT_460 GCA_003862485.1 HMT-082 DSM 24553 Named Cultivated Oral (Abundance: Medium) HMT-082 Lachnoanaerobaculum orale DSM 24553 13 2800999 37.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/862/485/GCA_003862485.1_ASM386248v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum orale PRJNA506617 979627 SAMN10465328 ASM386248v1 Scaffold SPAdes v. 3.8.2 2018-11-23T01:13:14.983 Sweden: Stockholm saliva Illumina HiSeq Korean Collection for Oral Microbiology 1310.5x 99.36 0 97.86 0.21 GCF_003862485.1 RRCM01 2563 2640 2640 17 9 50 1 Lachnoanaerobaculum_orale_homd_HMT_082 GCA_003892345.1 HMT-409 KCOM 2505 Named Cultivated Oral (Abundance: High) HMT-409 Lautropia dentalis KCOM 2505 12 3827229 65.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/892/345/GCA_003892345.1_ASM389234v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia dentalis PRJNA506520 2490857 SAMN10461999 ASM389234v1 Scaffold SPAdes v. 3.8.2 2018-11-22T03:02:17.150 South Korea: Gwangju Subgingival dental plaque Illumina HiSeq Korean Collection for Oral Microbiology 377.9x 97.89 0 97.56 0.14 GCF_003892345.1 RRUE01 2982 3069 3069 25 5 56 1 Lautropia_dentalis_homd_HMT_409 GCA_003932215.1 HMT-208 F6900 Named Cultivated Nasal (Abundance: Scarce) HMT-208 Corynebacterium bovis F6900 31 2628675 73.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/932/215/GCA_003932215.1_ASM393221v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium bovis PRJNA421327 36808 SAMN08139027 ASM393221v1 Contig SPAdes v. 3.11.1 2017-12-06T13:28:05.560 USA: Washington both eyes Illumina MiSeq Bacterial Special Pathogens Branch (CDC) 121.2x 98.08 99.32 0 99.98 0 GCF_003932215.1 PQNK01 2097 2168 2168 9 3 58 1 Corynebacterium_bovis_homd_HMT_208 GCA_003932255.1 HMT-208 12-5346 Named Cultivated Nasal (Abundance: Scarce) HMT-208 Corynebacterium bovis 12-5346 43 2673236 72.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/932/255/GCA_003932255.1_ASM393225v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium bovis PRJNA421327 36808 SAMN08139023 ASM393225v1 Contig SPAdes v. 3.11.1 2017-12-06T13:28:05.507 USA: New York City skin Illumina MiSeq Bacterial Special Pathogens Branch (CDC) 86.9x 98.26 99.32 0 99.89 0.02 GCF_003932255.1 PQNU01 2172 2244 2244 9 3 59 1 Corynebacterium_bovis_homd_HMT_208 GCA_003932295.1 HMT-208 4826 Named Cultivated Nasal (Abundance: Scarce) HMT-208 Corynebacterium bovis 4826 12 2666089 72.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/932/295/GCA_003932295.1_ASM393229v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium bovis PRJNA421327 36808 SAMN08139025 ASM393229v1 Contig SPAdes v. 3.11.1 2017-12-06T13:28:05.533 USA: Hawaii mastitis Illumina MiSeq Bacterial Special Pathogens Branch (CDC) 86.5x 99.79 99.32 0 99.88 0.01 GCF_003932295.1 PQNX01 2124 2197 2197 9 3 59 2 Corynebacterium_bovis_homd_HMT_208 GCA_003932435.1 HMT-208 13-1426 Named Cultivated Nasal (Abundance: Scarce) HMT-208 Corynebacterium bovis 13-1426 38 2670676 72.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/932/435/GCA_003932435.1_ASM393243v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium bovis PRJNA421327 36808 SAMN08139022 ASM393243v1 Contig SPAdes v. 3.11.1 2017-12-06T13:28:05.493 USA: New York City skin Illumina MiSeq Bacterial Special Pathogens Branch (CDC) 101.7x 98.25 99.32 0.45 99.96 0.02 GCF_003932435.1 PQNT01 2171 2243 2243 9 3 59 1 Corynebacterium_bovis_homd_HMT_208 GCA_003932475.1 HMT-208 4828 Named Cultivated Nasal (Abundance: Scarce) HMT-208 Corynebacterium bovis 4828 16 2633176 72.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/932/475/GCA_003932475.1_ASM393247v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium bovis PRJNA421327 36808 SAMN08139026 ASM393247v1 Contig SPAdes v. 3.11.1 2017-12-06T13:28:05.547 USA: Hawaii mastitis Illumina MiSeq Bacterial Special Pathogens Branch (CDC) 64.5x 99.79 99.32 0 99.91 0 GCF_003932475.1 PQNW01 2083 2156 2156 9 3 59 2 Corynebacterium_bovis_homd_HMT_208 GCA_003932775.1 HMT-630 OH1047_COT-310 Named Cultivated Oral (Abundance: Scarce) HMT-630 Bacteroides heparinolyticus OH1047_COT-310 202 3533051 47.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/932/775/GCA_003932775.1_ASM393277v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides heparinolyticus PRJNA506243 28113 SAMN10478692 ASM393277v1 Contig A5-miseq v. 20150331 2018-11-26T15:20:04.900 United Kingdom: Leicestershire dog mouth Illumina MiSeq UC Davis 223.0x 97.39 98.51 0 99.93 0.01 GCF_003932775.1 RQYF01 2855 2946 2946 26 7 57 1 Bacteroides_heparinolyticus_homd_HMT_630 GCA_003932835.1 HMT-202 OH5060 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum OH5060 192 2492174 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/932/835/GCA_003932835.1_ASM393283v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA506243 851 SAMN10478687 ASM393283v1 Contig A5-miseq v. 20150331 2018-11-26T15:20:04.823 United Kingdom: Leicestershire dog mouth Illumina MiSeq UC Davis 85.0x 92.33 100 0 100 0.35 GCF_003932835.1 RQZD01 2321 2398 2398 24 6 46 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_003938725.1 HMT-111 FDAARGOS_569 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra FDAARGOS_569 2 1715975 28.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/938/725/GCA_003938725.1_ASM393872v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA231221 33033 SAMN10163193 ASM393872v1 Contig Canu v. 1.4 2018-10-02T12:23:09.940 Unknown clinical isolate PacBio; Illumina US Food and Drug Administration 2122.0x 99.99 98.48 1.22 99.05 3.96 GCF_003938725.1 RKIS01 1595 1687 1687 38 11 42 1 Parvimonas_micra_homd_HMT_111 GCA_003939335.2 HMT-282 AJ_351 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-282 Acinetobacter junii AJ_351 2 3769270 38.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/939/335/GCA_003939335.2_ASM393933v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter junii PRJNA497126 40215 SAMN10249206 ASM393933v2 Complete Genome Unicycler v. v0.4.7 2018-10-16T18:54:09.070 Pakistan washroom sink in hospital intensive care unit Illumina NextSeq; Oxford Nanopore MinION Washington University in St. Louis School of Medicine 98.06 100 0.63 100 1.51 GCF_003939335.2 3628 3744 3744 25 18 72 1 Acinetobacter_junii_homd_HMT_282 GCA_003939355.2 HMT-282 AJ_068 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-282 Acinetobacter junii AJ_068 3 3483561 38.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/939/355/GCA_003939355.2_ASM393935v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter junii PRJNA497126 40215 SAMN10249224 ASM393935v2 Complete Genome Unicycler v. v0.4.7 2018-10-16T18:54:09.383 Pakistan washroom sink in hospital intensive care unit Illumina NextSeq; Oxford Nanopore MinION Washington University in St. Louis School of Medicine 98.25 100 0.27 100 0 GCF_003939355.2 3311 3424 3424 23 18 71 1 Acinetobacter_junii_homd_HMT_282 GCA_003942265.1 HMT-758 BCC24 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC24 15 2313364 43.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/265/GCA_003942265.1_ASM394226v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_O PRJNA480251 1305 SAMN09631775 ASM394226v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.977 USA: Florida dental plaque Illumina MiSeq Clemson University 109.0x 95.46 100 0 99.99 0.02 GCF_003942265.1 RJMP01 2233 2314 2314 30 3 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942275.1 HMT-758 BCC28 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC28 21 2380964 43.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/275/GCA_003942275.1_ASM394227v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_N PRJNA480251 1305 SAMN09631777 ASM394227v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:06.007 USA: Florida dental plaque Illumina MiSeq Clemson University 114.0x 95.23 100 0.44 99.99 0.35 GCF_003942275.1 RJMN01 2279 2361 2361 28 4 49 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942295.1 HMT-758 BCC25 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC25 27 2299763 43.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/295/GCA_003942295.1_ASM394229v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_O PRJNA480251 1305 SAMN09631776 ASM394229v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.990 USA: Florida dental plaque Illumina MiSeq Clemson University 109.0x 95.34 100 0 99.99 0.03 GCF_003942295.1 RJMO01 2184 2270 2270 27 6 52 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942365.1 HMT-758 BCC20 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC20 27 2375484 43.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/365/GCA_003942365.1_ASM394236v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA480251 1305 SAMN09631773 ASM394236v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.947 USA: Florida dental plaque Illumina MiSeq Clemson University 106.0x 95.89 100 0 99.99 0.03 GCF_003942365.1 RJMR01 2282 2370 2370 32 6 49 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942375.1 HMT-758 BCC18 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC18 37 2337239 43.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/375/GCA_003942375.1_ASM394237v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA480251 1305 SAMN09631772 ASM394237v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.933 USA: Florida dental plaque Illumina MiSeq Clemson University 62.0x 97.42 100 0.56 99.98 0.12 GCF_003942375.1 RJMS01 2226 2308 2308 28 6 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942385.1 HMT-758 BCC16 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC16 39 2433726 43.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/385/GCA_003942385.1_ASM394238v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_K PRJNA480251 1305 SAMN09631771 ASM394238v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.917 USA: Florida dental plaque Illumina MiSeq Clemson University 49.0x 95.25 100 0 99.99 0.06 GCF_003942385.1 RJMT01 2321 2402 2402 31 6 43 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942405.1 HMT-758 BCC61 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC61 14 2379524 43.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/405/GCA_003942405.1_ASM394240v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA480251 1305 SAMN09631766 ASM394240v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.840 USA: Florida dental plaque Illumina MiSeq Clemson University 115.0x 95.89 100 0 99.97 0.08 GCF_003942405.1 RJMY01 2268 2357 2357 32 3 53 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942415.1 HMT-758 BCC64 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC64 83 2363083 43.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/415/GCA_003942415.1_ASM394241v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA480251 1305 SAMN09631767 ASM394241v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.857 USA: Florida dental plaque Illumina MiSeq Clemson University 66.0x 95.78 100 0 99.99 0.06 GCF_003942415.1 RJMX01 2283 2372 2372 33 5 50 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942475.1 HMT-758 BCC46 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC46 31 2322617 43.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/475/GCA_003942475.1_ASM394247v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_K PRJNA480251 1305 SAMN09631763 ASM394247v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.770 USA: Florida dental plaque Illumina MiSeq Clemson University 56.0x 95.18 100 0 99.99 0.11 GCF_003942475.1 RJNB01 2209 2296 2296 27 6 53 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942485.1 HMT-758 BCC37 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC37 27 2386893 43.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/485/GCA_003942485.1_ASM394248v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_N PRJNA480251 1305 SAMN09631761 ASM394248v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.740 USA: Florida dental plaque Illumina MiSeq Clemson University 39.0x 95.23 100 0.44 99.99 0.35 GCF_003942485.1 RJND01 2283 2369 2369 28 4 53 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942525.1 HMT-411 A1 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis A1 22 2061849 41.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/525/GCA_003942525.1_ASM394252v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA480251 1318 SAMN09631758 ASM394252v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.693 USA: Florida dental plaque Illumina MiSeq Clemson University 124.0x 94.12 100 0.32 99.98 0 GCF_003942525.1 RJNG01 1947 2048 2048 37 5 58 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_003942565.1 HMT-707 BCA21 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis BCA21 20 1951779 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/565/GCA_003942565.1_ASM394256v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CP PRJNA480251 1303 SAMN09631756 ASM394256v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.667 USA: Florida dental plaque Illumina MiSeq Clemson University 60.0x 95.02 99.87 0.6 99.99 0.07 GCF_003942565.1 RJNI01 1835 1966 1966 73 5 52 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_003942565.1 HMT-707 BCA21 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis BCA21 20 1951779 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/565/GCA_003942565.1_ASM394256v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CP PRJNA480251 1303 SAMN09631756 ASM394256v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.667 USA: Florida dental plaque Illumina MiSeq Clemson University 60.0x 95.02 99.87 0.6 99.99 0.07 GCF_003942565.1 RJNI01 1835 1966 1966 73 5 52 1 Streptococcus_oralis_HMT_071_398_707 GCA_003942595.1 HMT-758 BCC53 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC53 26 2471942 42.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/595/GCA_003942595.1_ASM394259v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_N PRJNA480251 1305 SAMN09631753 ASM394259v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.620 USA: Florida dental plaque Illumina MiSeq Clemson University 62.0x 95.16 100 0 99.99 0.07 GCF_003942595.1 RJNL01 2389 2481 2481 27 10 54 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003942715.1 HMT-398 KLC07 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani KLC07 62 2005267 40.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/715/GCA_003942715.1_ASM394271v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA480251 28037 SAMN09631743 ASM394271v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.463 USA: Florida dental plaque Illumina MiSeq Clemson University 37.0x 87.35 99.78 0.2 99.94 0.12 GCF_003942715.1 RJNV01 1864 1956 1956 39 4 48 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_003942715.1 HMT-398 KLC07 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani KLC07 62 2005267 40.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/715/GCA_003942715.1_ASM394271v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA480251 28037 SAMN09631743 ASM394271v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.463 USA: Florida dental plaque Illumina MiSeq Clemson University 37.0x 87.35 99.78 0.2 99.94 0.12 GCF_003942715.1 RJNV01 1864 1956 1956 39 4 48 1 Streptococcus_oralis_HMT_071_398_707 GCA_003942765.1 HMT-677 KLC01 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis KLC01 31 2046314 39.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/765/GCA_003942765.1_ASM394276v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BE PRJNA480251 28037 SAMN09631741 ASM394276v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.433 USA: Florida dental plaque Illumina MiSeq Clemson University 75.0x 94.22 99.78 0.72 100 0.15 GCF_003942765.1 RJNW01 1951 2056 2056 46 6 52 1 Streptococcus_mitis_homd_HMT_677 GCA_003942775.1 HMT-677 BCC65 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis BCC65 34 2064589 39.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/775/GCA_003942775.1_ASM394277v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CN PRJNA480251 28037 SAMN09631740 ASM394277v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.420 USA: Florida dental plaque Illumina MiSeq Clemson University 73.0x 94.55 99.82 0.2 100 0.11 GCF_003942775.1 RJNX01 1980 2090 2090 48 7 54 1 Streptococcus_mitis_homd_HMT_677 GCA_003942875.1 HMT-707 BCC52 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis BCC52 22 2089314 40.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/875/GCA_003942875.1_ASM394287v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BX PRJNA480251 1303 SAMN09631736 ASM394287v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.350 USA: Florida dental plaque Illumina MiSeq Clemson University 73.0x 94.91 99.87 0.2 100 0.03 GCF_003942875.1 RMVK01 1942 2040 2040 43 7 47 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_003942875.1 HMT-707 BCC52 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis BCC52 22 2089314 40.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/875/GCA_003942875.1_ASM394287v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BX PRJNA480251 1303 SAMN09631736 ASM394287v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.350 USA: Florida dental plaque Illumina MiSeq Clemson University 73.0x 94.91 99.87 0.2 100 0.03 GCF_003942875.1 RMVK01 1942 2040 2040 43 7 47 1 Streptococcus_oralis_HMT_071_398_707 GCA_003942915.1 HMT-398 BCC40 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani BCC40 51 1896964 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/915/GCA_003942915.1_ASM394291v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AX PRJNA480251 28037 SAMN09631732 ASM394291v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.287 USA: Florida dental plaque Illumina MiSeq Clemson University 177.0x 87.38 99.87 0.2 99.99 0.38 GCF_003942915.1 RJOD01 1818 1910 1910 41 6 44 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_003942915.1 HMT-398 BCC40 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani BCC40 51 1896964 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/915/GCA_003942915.1_ASM394291v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AX PRJNA480251 28037 SAMN09631732 ASM394291v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.287 USA: Florida dental plaque Illumina MiSeq Clemson University 177.0x 87.38 99.87 0.2 99.99 0.38 GCF_003942915.1 RJOD01 1818 1910 1910 41 6 44 1 Streptococcus_oralis_HMT_071_398_707 GCA_003943035.1 HMT-644 A6 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius A6 34 1993372 37.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/035/GCA_003943035.1_ASM394303v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA480251 1338 SAMN09631725 ASM394303v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.173 USA: Florida dental plaque Illumina MiSeq Clemson University 77.0x 98.4 100 0 100 0.24 GCF_003943035.1 RJOI01 1928 2020 2020 33 4 54 1 Streptococcus_intermedius_homd_HMT_644 GCA_003943045.1 HMT-644 A5 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius A5 14 1968232 37.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/045/GCA_003943045.1_ASM394304v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA480251 1338 SAMN09631724 ASM394304v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.153 USA: Florida dental plaque Illumina MiSeq Clemson University 45.0x 98.35 100 0 100 0.17 GCF_003943045.1 RJOJ01 1924 2014 2014 37 4 48 1 Streptococcus_intermedius_homd_HMT_644 GCA_003943085.1 HMT-644 A3 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius A3 41 1912153 37.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/085/GCA_003943085.1_ASM394308v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA480251 1338 SAMN09631722 ASM394308v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.073 USA: Florida dental plaque Illumina MiSeq Clemson University 64.0x 98.21 100 1.45 99.99 0.36 GCF_003943085.1 RJOL01 1856 1939 1939 35 4 43 1 Streptococcus_intermedius_homd_HMT_644 GCA_003943095.1 HMT-644 A2 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius A2 26 2001461 37.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/095/GCA_003943095.1_ASM394309v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA480251 1338 SAMN09631721 ASM394309v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.060 USA: Florida dental plaque Illumina MiSeq Clemson University 110.0x 98.36 99.88 0 100 0.18 GCF_003943095.1 RJOM01 1971 2067 2067 39 4 52 1 Streptococcus_intermedius_homd_HMT_644 GCA_003943125.1 HMT-644 KLC02 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius KLC02 26 2003880 37.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/125/GCA_003943125.1_ASM394312v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA480251 1338 SAMN09631719 ASM394312v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.027 USA: Florida dental plaque Illumina MiSeq Clemson University 109.0x 98.56 99.88 0 100 0.21 GCF_003943125.1 RJOO01 1933 2031 2031 33 4 60 1 Streptococcus_intermedius_homd_HMT_644 GCA_003943145.1 HMT-644 BCC47 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius BCC47 18 1889067 37.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/145/GCA_003943145.1_ASM394314v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA480251 1338 SAMN09631718 ASM394314v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.010 USA: Florida dental plaque Illumina MiSeq Clemson University 138.0x 98.46 99.73 0 100 0.25 GCF_003943145.1 RJOP01 1790 1879 1879 36 4 48 1 Streptococcus_intermedius_homd_HMT_644 GCA_003943155.1 HMT-644 BCC01 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius BCC01 33 1993716 37.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/155/GCA_003943155.1_ASM394315v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA480251 1338 SAMN09631716 ASM394315v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.943 USA: Florida dental plaque Illumina MiSeq Clemson University 56.0x 98.4 100 0 100 0.24 GCF_003943155.1 RJOR01 1925 2017 2017 33 4 54 1 Streptococcus_intermedius_homd_HMT_644 GCA_003943175.1 HMT-622 BCA10 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BCA10 16 2239661 40.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/175/GCA_003943175.1_ASM394317v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631713 ASM394317v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.900 USA: Florida dental plaque Illumina MiSeq Clemson University 58.0x 95.6 100 0 100 0.22 GCF_003943175.1 RJOU01 2158 2241 2241 30 5 47 1 Streptococcus_gordonii_homd_HMT_622 GCA_003943195.1 HMT-622 BCA7 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BCA7 36 2150535 40.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/195/GCA_003943195.1_ASM394319v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631711 ASM394319v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.863 USA: Florida dental plaque Illumina MiSeq Clemson University 60.0x 95.55 100 0 100 0.02 GCF_003943195.1 RJOW01 2032 2114 2114 25 6 50 1 Streptococcus_gordonii_homd_HMT_622 GCA_003943215.1 HMT-622 A8 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A8 19 2225347 40.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/215/GCA_003943215.1_ASM394321v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631709 ASM394321v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.820 USA: Florida dental plaque Illumina MiSeq Clemson University 84.0x 95.62 100 0 100 0.14 GCF_003943215.1 RJOX01 2107 2212 2212 52 5 47 1 Streptococcus_gordonii_homd_HMT_622 GCA_003943245.1 HMT-622 A7 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A7 136 2151963 40.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/245/GCA_003943245.1_ASM394324v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631708 ASM394324v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.807 USA: Florida dental plaque Illumina MiSeq Clemson University 33.0x 95.53 99.63 0 99.99 0.04 GCF_003943245.1 RJOY01 2025 2116 2116 26 6 58 1 Streptococcus_gordonii_homd_HMT_622 GCA_003943255.1 HMT-622 A9 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A9 24 2182769 40.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/255/GCA_003943255.1_ASM394325v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631707 ASM394325v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.790 USA: Florida dental plaque Illumina MiSeq Clemson University 38.0x 95.53 99.63 0 99.99 0.04 GCF_003943255.1 RJOZ01 2083 2163 2163 26 4 49 1 Streptococcus_gordonii_homd_HMT_622 GCA_003943285.1 HMT-622 A11 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A11 61 2280671 40.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/285/GCA_003943285.1_ASM394328v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631706 ASM394328v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.750 USA: Florida dental plaque Illumina MiSeq Clemson University 22.0x 95.77 100 0 100 0.17 GCF_003943285.1 RJPA01 2153 2236 2236 31 6 45 1 Streptococcus_gordonii_homd_HMT_622 GCA_003943295.1 HMT-622 KLC06 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii KLC06 106 2241345 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/295/GCA_003943295.1_ASM394329v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631704 ASM394329v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.680 USA: Florida dental plaque Illumina MiSeq Clemson University 94.0x 95.7 100 0.31 99.99 0.17 GCF_003943295.1 RJPC01 2087 2172 2172 27 5 52 1 Streptococcus_gordonii_homd_HMT_622 GCA_003943305.1 HMT-622 BCC32 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BCC32 73 2170067 40.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/305/GCA_003943305.1_ASM394330v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631701 ASM394330v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.633 USA: Florida dental plaque Illumina MiSeq Clemson University 50.0x 95.63 100 0 99.99 0.08 GCF_003943305.1 RJVX01 2035 2116 2116 29 5 46 1 Streptococcus_gordonii_homd_HMT_622 GCA_003943345.1 HMT-622 BCC09 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BCC09 125 2228843 40.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/345/GCA_003943345.1_ASM394334v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631698 ASM394334v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.587 USA: Florida dental plaque Illumina MiSeq Clemson University 33.0x 95.65 100 0 100 0.04 GCF_003943345.1 RJVY01 2139 2217 2217 29 4 44 1 Streptococcus_gordonii_homd_HMT_622 GCA_003943355.1 HMT-622 BCC27 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BCC27 13 2194129 40.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/355/GCA_003943355.1_ASM394335v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631699 ASM394335v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.600 USA: Florida dental plaque Illumina MiSeq Clemson University 92.0x 95.71 100 0 99.99 0.02 GCF_003943355.1 RJPG01 2090 2171 2171 27 6 47 1 Streptococcus_gordonii_homd_HMT_622 GCA_003943435.1 HMT-578 A55 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus A55 51 2278062 41.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/435/GCA_003943435.1_ASM394343v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_C PRJNA480251 45634 SAMN09631687 ASM394343v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.420 USA: Florida dental plaque Illumina MiSeq Clemson University 56.0x 94.78 100 0 100 0.27 GCF_003943435.1 RJPP01 2225 2315 2315 35 6 48 1 Streptococcus_cristatus_homd_HMT_578 GCA_003943455.1 HMT-578 BCA15 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus BCA15 42 1967660 42.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/455/GCA_003943455.1_ASM394345v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus PRJNA480251 45634 SAMN09631691 ASM394345v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.480 USA: Florida dental plaque Illumina MiSeq Clemson University 39.0x 95.95 100 0 99.95 0.05 GCF_003943455.1 RJPL01 1871 1958 1958 30 6 50 1 Streptococcus_cristatus_homd_HMT_578 GCA_003943465.1 HMT-578 A53 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus A53 47 2287283 41.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/465/GCA_003943465.1_ASM394346v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_C PRJNA480251 45634 SAMN09631685 ASM394346v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.390 USA: Florida dental plaque Illumina MiSeq Clemson University 52.0x 94.79 100 0 100 0.28 GCF_003943465.1 RJPR01 2236 2323 2323 35 6 45 1 Streptococcus_cristatus_homd_HMT_578 GCA_003943505.1 HMT-578 A52 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus A52 132 2080561 42.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/505/GCA_003943505.1_ASM394350v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_E PRJNA480251 45634 SAMN09631684 ASM394350v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.377 USA: Florida dental plaque Illumina MiSeq Clemson University 60.0x 94.31 100 0.91 99.98 0.47 GCF_003943505.1 RJPS01 2032 2114 2114 29 6 46 1 Streptococcus_cristatus_homd_HMT_578 GCA_003943515.1 HMT-578 BCC41 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus BCC41 40 2003744 42.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/515/GCA_003943515.1_ASM394351v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_D PRJNA480251 45634 SAMN09631683 ASM394351v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.360 USA: Florida dental plaque Illumina MiSeq Clemson University 71.0x 94.54 100 0 99.91 0.08 GCF_003943515.1 RJPT01 1886 2013 2013 85 6 35 1 Streptococcus_cristatus_homd_HMT_578 GCA_003943535.1 HMT-578 BCC13 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus BCC13 44 2041369 42.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/535/GCA_003943535.1_ASM394353v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_L PRJNA480251 45634 SAMN09631682 ASM394353v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.347 USA: Florida dental plaque Illumina MiSeq Clemson University 70.0x 94.82 99.63 0 99.94 0.13 GCF_003943535.1 RJPU01 1935 2025 2025 33 5 51 1 Streptococcus_cristatus_homd_HMT_578 GCA_003943625.1 HMT-073 A13 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis A13 23 1858755 42.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/625/GCA_003943625.1_ASM394362v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA480251 113107 SAMN09631676 ASM394362v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.250 USA: Florida dental plaque Illumina MiSeq Clemson University 32.0x 93.57 99.66 0 99.98 0 GCF_003943625.1 RQOY01 1764 1867 1867 47 3 52 1 Streptococcus_australis_homd_HMT_073 GCA_003943655.1 HMT-758 BCC31 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC31 67 2292169 43.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/655/GCA_003943655.1_ASM394365v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_F PRJNA480251 1305 SAMN09631778 ASM394365v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:06.023 USA: Florida dental plaque Illumina MiSeq Clemson University 28.0x 94.5 100 0 99.97 0.08 GCF_003943655.1 RJMM01 2160 2280 2280 69 6 44 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003943675.1 HMT-073 G2 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis G2 21 1924564 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/675/GCA_003943675.1_ASM394367v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA480251 1759399 SAMN09631674 ASM394367v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.210 USA: Florida dental plaque Illumina MiSeq Clemson University 72.0x 98.98 0.17 99.98 0 GCF_003943675.1 RJQB01 1836 1929 1929 39 4 49 1 Streptococcus_australis_homd_HMT_073 GCA_003943715.1 HMT-758 BCC23 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC23 23 2382327 43.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/715/GCA_003943715.1_ASM394371v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_H PRJNA480251 1305 SAMN09631774 ASM394371v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.960 USA: Florida dental plaque Illumina MiSeq Clemson University 60.0x 95.13 100 0 99.98 0.08 GCF_003943715.1 RJMQ01 2284 2368 2368 27 6 50 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003943735.1 HMT-758 BCC04 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC04 37 2392588 42.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/735/GCA_003943735.1_ASM394373v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_E PRJNA480251 1305 SAMN09631769 ASM394373v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.887 USA: Florida dental plaque Illumina MiSeq Clemson University 87.0x 95.07 100 0 99.98 0.07 GCF_003943735.1 RJMV01 2307 2454 2454 89 7 50 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003943755.1 HMT-758 BCC03 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC03 21 2368126 43.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/755/GCA_003943755.1_ASM394375v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_M PRJNA480251 1305 SAMN09631768 ASM394375v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.870 USA: Florida dental plaque Illumina MiSeq Clemson University 64.0x 95.13 100 0 99.99 0.06 GCF_003943755.1 RJMW01 2281 2363 2363 28 6 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003943785.1 HMT-758 BCC54 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCC54 21 2470878 42.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/785/GCA_003943785.1_ASM394378v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_N PRJNA480251 1305 SAMN09631765 ASM394378v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.820 USA: Florida dental plaque Illumina MiSeq Clemson University 76.0x 95.15 100 0 99.99 0.07 GCF_003943785.1 RJMZ01 2390 2475 2475 27 9 48 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003943815.1 HMT-578 BCC51 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus BCC51 68 2085438 42.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/815/GCA_003943815.1_ASM394381v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_F PRJNA480251 45634 SAMN09631764 ASM394381v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.787 USA: Florida dental plaque Illumina MiSeq Clemson University 54.0x 94.76 100 0 99.97 0.08 GCF_003943815.1 RJNA01 1985 2072 2072 36 6 44 1 Streptococcus_cristatus_homd_HMT_578 GCA_003943905.1 HMT-398 BCA11 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani BCA11 18 1943341 41.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/905/GCA_003943905.1_ASM394390v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BC PRJNA480251 28037 SAMN09631746 ASM394390v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.510 USA: Florida dental plaque Illumina MiSeq Clemson University 49.0x 87.53 99.47 0.33 100 0.04 GCF_003943905.1 RJNS01 1841 1950 1950 44 6 58 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_003943905.1 HMT-398 BCA11 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani BCA11 18 1943341 41.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/905/GCA_003943905.1_ASM394390v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BC PRJNA480251 28037 SAMN09631746 ASM394390v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.510 USA: Florida dental plaque Illumina MiSeq Clemson University 49.0x 87.53 99.47 0.33 100 0.04 GCF_003943905.1 RJNS01 1841 1950 1950 44 6 58 1 Streptococcus_oralis_HMT_071_398_707 GCA_003944005.1 HMT-644 A4 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius A4 26 1992918 37.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/005/GCA_003944005.1_ASM394400v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA480251 1338 SAMN09631723 ASM394400v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.127 USA: Florida dental plaque Illumina MiSeq Clemson University 29.0x 98.39 100 0 100 0.24 GCF_003944005.1 RJOK01 1929 2021 2021 33 4 54 1 Streptococcus_intermedius_homd_HMT_644 GCA_003944015.1 HMT-644 KLC09 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius KLC09 56 1876885 37.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/015/GCA_003944015.1_ASM394401v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA480251 1338 SAMN09631720 ASM394401v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:05.043 USA: Florida dental plaque Illumina MiSeq Clemson University 20.0x 98.35 99.88 0.16 99.99 0.21 GCF_003944015.1 RJON01 1805 1915 1915 56 4 49 1 Streptococcus_intermedius_homd_HMT_644 GCA_003944025.1 HMT-644 BCC34 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius BCC34 23 1953433 37.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/025/GCA_003944025.1_ASM394402v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA480251 1338 SAMN09631717 ASM394402v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.960 USA: Florida dental plaque Illumina MiSeq Clemson University 64.0x 98.36 99.88 0.43 100 0.26 GCF_003944025.1 RJOQ01 1856 1947 1947 34 5 51 1 Streptococcus_intermedius_homd_HMT_644 GCA_003944065.1 HMT-622 BCA22 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BCA22 22 2136640 40.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/065/GCA_003944065.1_ASM394406v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631715 ASM394406v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.930 USA: Florida dental plaque Illumina MiSeq Clemson University 49.0x 96.18 100 0.37 100 0.26 GCF_003944065.1 RJOS01 2003 2127 2127 60 7 56 1 Streptococcus_gordonii_homd_HMT_622 GCA_003944075.1 HMT-622 BCA14 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BCA14 25 2199820 40.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/075/GCA_003944075.1_ASM394407v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631714 ASM394407v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.913 USA: Florida dental plaque Illumina MiSeq Clemson University 60.0x 95.6 100 0.37 100 0.1 GCF_003944075.1 RJOT01 2097 2179 2179 29 5 47 1 Streptococcus_gordonii_homd_HMT_622 GCA_003944105.1 HMT-622 A10 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A10 12 2155301 40.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/105/GCA_003944105.1_ASM394410v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631705 ASM394410v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.693 USA: Florida dental plaque Illumina MiSeq Clemson University 64.0x 95.53 100 0 99.99 0.04 GCF_003944105.1 RJPB01 2032 2109 2109 25 5 46 1 Streptococcus_gordonii_homd_HMT_622 GCA_003944115.1 HMT-622 BCC62 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BCC62 20 2306361 40.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/115/GCA_003944115.1_ASM394411v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631703 ASM394411v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.663 USA: Florida dental plaque Illumina MiSeq Clemson University 91.0x 95.6 100 0 100 0.1 GCF_003944115.1 RJPD01 2218 2303 2303 31 6 47 1 Streptococcus_gordonii_homd_HMT_622 GCA_003944125.1 HMT-758 BCA9 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCA9 24 2303887 42.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/125/GCA_003944125.1_ASM394412v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_C PRJNA480251 1305 SAMN09631712 ASM394412v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.880 USA: Florida dental plaque Illumina MiSeq Clemson University 45.0x 95.03 100 0 99.99 0.1 GCF_003944125.1 RJOV01 2238 2332 2332 33 6 54 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003944135.1 HMT-622 BCC29 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BCC29 30 2137816 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/135/GCA_003944135.1_ASM394413v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631700 ASM394413v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.620 USA: Florida dental plaque Illumina MiSeq Clemson University 52.0x 95.63 100 0 99.99 0.01 GCF_003944135.1 RJPF01 2004 2079 2079 26 6 42 1 Streptococcus_gordonii_homd_HMT_622 GCA_003944155.1 HMT-622 BCC57 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BCC57 27 2243946 40.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/155/GCA_003944155.1_ASM394415v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA480251 1302 SAMN09631702 ASM394415v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.650 USA: Florida dental plaque Illumina MiSeq Clemson University 45.0x 95.75 100 0 100 0.2 GCF_003944155.1 RJPE01 2158 2245 2245 28 7 51 1 Streptococcus_gordonii_homd_HMT_622 GCA_003944225.1 HMT-578 BCA4 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus BCA4 43 1991942 42.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/225/GCA_003944225.1_ASM394422v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_K PRJNA480251 45634 SAMN09631689 ASM394422v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.450 USA: Florida dental plaque Illumina MiSeq Clemson University 72.0x 94.91 100 0.19 99.84 0.11 GCF_003944225.1 RJPN01 1860 2023 2023 110 6 46 1 Streptococcus_cristatus_homd_HMT_578 GCA_003944245.1 HMT-578 BCA6 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus BCA6 48 2066467 42.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/245/GCA_003944245.1_ASM394424v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus PRJNA480251 45634 SAMN09631690 ASM394424v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.467 USA: Florida dental plaque Illumina MiSeq Clemson University 73.0x 96.13 100 0 99.99 0.05 GCF_003944245.1 RJPM01 1971 2065 2065 37 6 50 1 Streptococcus_cristatus_homd_HMT_578 GCA_003944305.1 HMT-578 A56 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus A56 68 2294401 41.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/305/GCA_003944305.1_ASM394430v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_C PRJNA480251 45634 SAMN09631688 ASM394430v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.437 USA: Florida dental plaque Illumina MiSeq Clemson University 152.0x 94.79 100 0 100 0.28 GCF_003944305.1 RJPO01 2240 2327 2327 35 6 45 1 Streptococcus_cristatus_homd_HMT_578 GCA_003944315.1 HMT-578 A54 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus A54 52 2282836 41.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/315/GCA_003944315.1_ASM394431v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_C PRJNA480251 45634 SAMN09631686 ASM394431v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.407 USA: Florida dental plaque Illumina MiSeq Clemson University 27.0x 94.79 100 0 100 0.28 GCF_003944315.1 RJPQ01 2233 2320 2320 35 6 45 1 Streptococcus_cristatus_homd_HMT_578 GCA_003944345.1 HMT-073 BCC21 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis BCC21 16 1943002 41.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/345/GCA_003944345.1_ASM394434v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA480251 1759399 SAMN09631675 ASM394434v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:04.230 USA: Florida dental plaque Illumina MiSeq Clemson University 58.0x 99.66 0.17 99.99 0 GCF_003944345.1 RJQA01 1877 1975 1975 42 5 50 1 Streptococcus_australis_homd_HMT_073 GCA_003944395.1 HMT-707 BCA17 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis BCA17 20 2011128 41.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/395/GCA_003944395.1_ASM394439v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp030546305 PRJNA480251 1303 SAMN09631785 ASM394439v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:06.133 USA: Florida dental plaque Illumina MiSeq Clemson University 45.0x 95.03 99.83 0.83 100 0.04 GCF_003944395.1 RJMF01 1872 1966 1966 38 6 49 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_003944395.1 HMT-707 BCA17 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis BCA17 20 2011128 41.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/395/GCA_003944395.1_ASM394439v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp030546305 PRJNA480251 1303 SAMN09631785 ASM394439v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:06.133 USA: Florida dental plaque Illumina MiSeq Clemson University 45.0x 95.03 99.83 0.83 100 0.04 GCF_003944395.1 RJMF01 1872 1966 1966 38 6 49 1 Streptococcus_oralis_HMT_071_398_707 GCA_003944405.1 HMT-758 BCA13 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCA13 20 2359323 43.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/405/GCA_003944405.1_ASM394440v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA480251 1305 SAMN09631784 ASM394440v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:06.117 USA: Florida dental plaque Illumina MiSeq Clemson University 30.0x 95.87 100 0.12 99.96 0.11 GCF_003944405.1 RJMG01 2216 2309 2309 31 6 55 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003944415.1 HMT-758 BCA3 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BCA3 17 2338342 43.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/415/GCA_003944415.1_ASM394441v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA480251 1305 SAMN09631783 ASM394441v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:06.103 USA: Florida dental plaque Illumina MiSeq Clemson University 71.0x 95.9 100 0 99.98 0.07 GCF_003944415.1 RJMH01 2220 2307 2307 28 4 54 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003944465.1 HMT-758 KLC04 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis KLC04 76 2366195 43.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/465/GCA_003944465.1_ASM394446v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_F PRJNA480251 1305 SAMN09631780 ASM394446v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:06.057 USA: Florida dental plaque Illumina MiSeq Clemson University 307.0x 94.49 100 1.22 99.96 0.14 GCF_003944465.1 RJMK01 2230 2336 2336 56 4 45 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003944475.1 HMT-758 KLC03 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis KLC03 28 2362223 43.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/475/GCA_003944475.1_ASM394447v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_E PRJNA480251 1305 SAMN09631779 ASM394447v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:06.040 USA: Florida dental plaque Illumina MiSeq Clemson University 85.0x 94.94 100 0.44 99.97 0.56 GCF_003944475.1 RJML01 2258 2384 2384 68 4 53 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003944485.1 HMT-758 KLC10 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis KLC10 42 2345633 43.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/485/GCA_003944485.1_ASM394448v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_M PRJNA480251 1305 SAMN09631782 ASM394448v1 Contig A5_miseq v. 20160825 2018-07-09T11:29:06.087 USA: Florida dental plaque Illumina MiSeq Clemson University 55.0x 95.15 100 0 99.98 0.03 GCF_003944485.1 RJMI01 2239 2331 2331 29 5 57 1 Streptococcus_sanguinis_homd_HMT_758 GCA_003952325.1 HMT-536 B17932 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-536 Pseudomonas aeruginosa B17932 1 6744658 65.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/952/325/GCA_003952325.1_ASM395232v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa PRJNA509363 287 SAMN10579150 ASM395232v1 Complete Genome CANU v. 1.7; UNICYCLER v. 0.4.6 2018-12-11T08:34:05.060 India blood Oxford Nanopore MiniION; IonTorrent Christian Medical College 283.0x 98.9 98.79 0.17 100 0.33 GCF_003952325.1 6198 6413 6413 129 12 73 1 Pseudomonas_aeruginosa_homd_HMT_536 GCA_003952785.1 HMT-297 IC001 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-297 Acinetobacter johnsonii IC001 5 3736232 41.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/952/785/GCA_003952785.1_ASM395278v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter johnsonii PRJNA392395 40214 SAMN07298690 ASM395278v1 Complete Genome Newbler v. 2.8; GenomeFinisher v. 2.0; AceFileViewer v. 1.4 2017-06-29T09:07:04.013 Japan: Tokyo Illumina The University of Tokyo 102.0x 96.08 100 0.27 100 1.49 GCF_003952785.1 3653 3812 3812 49 21 88 1 Acinetobacter_johnsonii_homd_HMT_297 GCA_003953005.1 HMT-799 OMC-P162 Named Cultivated Vaginal (Abundance: Medium) HMT-799 Ureaplasma parvum OMC-P162 1 732031 25.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/953/005/GCA_003953005.1_ASM395300v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum PRJDB6718 38504 SAMD00111973 ASM395300v1 Complete Genome HGAP v. 2 2018-10-17T16:05:58.963 Japan PacBio RSII Department of Developmental Medicine, Research Institute, Osaka Women’s and Children’s Hospital 996.0x 99.44 98.87 0 97.81 0.7 GCF_003953005.1 1219 1261 1261 5 6 30 1 Ureaplasma_parvum_homd_HMT_799 GCA_003956005.1 HMT-120 FDAARGOS_517 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus FDAARGOS_517 3 2669504 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/956/005/GCA_003956005.1_ASM395600v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA231221 1283 SAMN10163211 ASM395600v1 Complete Genome Canu v. 1.4 2018-10-02T12:23:10.280 not applicable bronchoalveolar lavage PacBio; Illumina US Food and Drug Administration 18.2x 99.32 99.62 0.06 99.99 0.38 GCF_003956005.1 2636 2816 2816 97 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_003956025.1 HMT-117 FDAARGOS_538 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-117 Staphylococcus cohnii FDAARGOS_538 2 2700845 32.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/956/025/GCA_003956025.1_ASM395602v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus cohnii PRJNA231221 29382 SAMN10163250 ASM395602v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3.0 2018-10-02T12:23:11.080 not applicable clinical isolate PacBio; Illumina US Food and Drug Administration 12.3x 99.99 98.9 0 99.99 0.25 GCF_003956025.1 2638 2769 2769 51 19 60 1 Staphylococcus_cohnii_homd_HMT_117 GCA_003963205.1 HMT-559 AWTP1-7 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-559 Afipia broomeae AWTP1-7 60 5173336 61.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/963/205/GCA_003963205.1_ASM396320v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia;s__Afipia broomeae PRJNA490743 2072420 SAMN10409047 ASM396320v1 Scaffold IDBA_UD v. 1.0 2018-11-10T23:45:06.173 USA: Texas Granular activated carbon Illumina HiSeq University of California, Berkeley 16.8x 99.48 0.79 99.98 1.01 RXJE01 4960 5045 5045 33 1 50 1 Afipia_broomeae_homd_HMT_559 GCA_003963555.1 HMT-543 KCOM 2412 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus KCOM 2412 1 1903815 38.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/963/555/GCA_003963555.1_ASM396355v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA506614 2490633 SAMN10465145 ASM396355v1 Complete Genome SPAdes v. 3.8.2; RS HGAP Assembly v. v3.0 2018-11-23T00:10:05.226 South Korea: Gwangju Subgingival dental plaque Illumina HiSeq; PacBio Korean Collection for Oral Microbiology 1538.3x 99.88 0.71 99.98 0.12 GCF_003963555.1 1808 1914 1914 34 12 59 1 Streptococcus_anginosus_homd_HMT_543 GCA_003966505.1 HMT-734 HU-OH Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae HU-OH 1 2058492 39.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/966/505/GCA_003966505.1_ASM396650v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJDB7410 1313 SAMD00137664 ASM396650v1 Complete Genome Unicycler v. 0.4.7b 2018-10-11T01:00:31.860 Japan:Hokkaido Oxford Nanopore MinION; Illumina Miseq Department of Infectious diseases, Faculty of Medicine, University of Miyazaki 573.0x 98.77 99.82 0.2 100 0.17 GCF_003966505.1 2025 2169 2169 73 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_003966585.1 HMT-567 JMUB145 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae JMUB145 1 2618380 33.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/966/585/GCA_003966585.1_ASM396658v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJDB6943 29380 SAMD00115877 ASM396658v1 Complete Genome Velvet de novo Assembly v. 1.0.0 2018-09-01T01:00:46.317 Japan MiSeq;ABI 3730 Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 112.5x 98.67 99.81 0.09 100 0 GCF_003966585.1 2447 2601 2601 74 19 60 1 Staphylococcus_caprae_homd_HMT_567 GCA_003966605.1 HMT-567 JMUB590 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae JMUB590 1 2629173 33.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/966/605/GCA_003966605.1_ASM396660v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJDB6943 29380 SAMD00115876 ASM396660v1 Complete Genome Velvet de novo Assembly v. 1.0.0 2018-09-01T01:00:46.297 Japan MiSeq;ABI 3730 Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 179.3x 98.68 99.81 0 100 0.01 GCF_003966605.1 2466 2609 2609 66 16 60 1 Staphylococcus_caprae_homd_HMT_567 GCA_003966625.1 HMT-567 JMUB898 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae JMUB898 1 2598513 33.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/966/625/GCA_003966625.1_ASM396662v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJDB6943 29380 SAMD00115875 ASM396662v1 Complete Genome Velvet de novo Assembly v. 1.0.0 2018-09-01T01:00:46.273 Japan MiSeq;ABI 3730 Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 150.6x 98.69 99.81 0 100 0.01 GCF_003966625.1 2431 2573 2573 65 16 60 1 Staphylococcus_caprae_homd_HMT_567 GCA_003968865.1 HMT-233 NCTC 12218 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-233 Staphylococcus schleiferi NCTC 12218 156 2473007 35.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/968/865/GCA_003968865.1_ASM396886v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus schleiferi PRJNA339206 74707 SAMN05978014 ASM396886v1 Scaffold Velvet v. 1.2.10 2016-11-03T12:57:37.136 United Kingdom: London Jugular catheter Illumina MiSeq Modernising Medical Microbiology 90.4x 99.98 98.86 0.28 100 0 GCF_003968865.1 RXXB01 2298 2449 2449 78 13 59 1 Staphylococcus_schleiferi_homd_HMT_233 GCA_003968885.1 HMT-789 NCTC 11807 Named Cultivated Skin (Abundance: Medium) HMT-789 Staphylococcus saccharolyticus NCTC 11807 93 2350071 32.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/968/885/GCA_003968885.1_ASM396888v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus saccharolyticus PRJNA339206 33028 SAMN05977977 ASM396888v1 Scaffold Velvet v. 1.2.10 2016-11-03T12:57:04.640 United Kingdom: London plasma Illumina MiSeq Modernising Medical Microbiology 87.8x 99.97 95.84 0.7 98.51 0.03 GCF_003968885.1 RXXC01 2644 2763 2763 52 6 60 1 Staphylococcus_saccharolyticus_homd_HMT_789 GCA_003970495.1 HMT-141 DSM 10656 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-141 Staphylococcus pasteuri DSM 10656 93 2462952 31.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/970/495/GCA_003970495.1_ASM397049v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pasteuri PRJNA339206 45972 SAMN05978001 ASM397049v1 Scaffold Velvet v. 1.2.10 2016-11-03T12:57:24.040 Germany: Braunschweig vomit Illumina MiSeq Modernising Medical Microbiology 91.6x 99.17 0.02 99.99 0.03 GCF_003970495.1 RXWW01 2373 2498 2498 58 6 60 1 Staphylococcus_pasteuri_homd_HMT_141 GCA_003971285.1 HMT-833 74P50B1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 74P50B1 1 1832216 41.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/971/285/GCA_003971285.1_ASM397128v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA509208 480 SAMN10536191 ASM397128v1 Complete Genome canu v. 1.4 2018-12-09T08:41:05.416 USA: Buffalo, NY sputum PacBio Sequel Institute for Genome Sciences, University of Maryland, Baltimore 30.0x 99.19 99.73 0.27 100 0.02 GCF_003971285.1 1637 1707 1707 7 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003971305.1 HMT-833 142P87B1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 142P87B1 1 1909077 41.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/971/305/GCA_003971305.1_ASM397130v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA509208 480 SAMN10536190 ASM397130v1 Complete Genome canu v. 1.4 2018-12-09T08:41:05.396 USA: Buffalo, NY sputum PacBio Sequel Institute for Genome Sciences, University of Maryland, Baltimore 26.0x 99.15 99.73 0.27 100 0 GCF_003971305.1 1731 1803 1803 9 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003971325.1 HMT-833 46P58B1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 46P58B1 1 2045324 41.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/971/325/GCA_003971325.1_ASM397132v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA509208 480 SAMN10536193 ASM397132v1 Complete Genome canu v. 1.4 2018-12-09T08:41:05.450 USA: Buffalo, NY sputum PacBio Sequel Institute for Genome Sciences, University of Maryland, Baltimore 24.0x 99.19 99.73 0.27 100 0.28 GCF_003971325.1 1895 1970 1970 12 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003971345.1 HMT-833 74P58B1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 74P58B1 1 1832141 41.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/971/345/GCA_003971345.1_ASM397134v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA509208 480 SAMN10536192 ASM397134v1 Complete Genome canu v. 1.4 2018-12-09T08:41:05.433 USA: Buffalo, NY sputum PacBio Sequel Institute for Genome Sciences, University of Maryland, Baltimore 31.0x 99.19 99.73 0.27 100 0.02 GCF_003971345.1 1637 1707 1707 7 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003971365.1 HMT-833 5P47B2 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 5P47B2 1 1933669 41.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/971/365/GCA_003971365.1_ASM397136v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA509208 480 SAMN10536188 ASM397136v1 Complete Genome canu v. 1.4 2018-12-09T08:41:05.353 USA: Buffalo, NY sputum PacBio Sequel Institute for Genome Sciences, University of Maryland, Baltimore 29.0x 99.19 99.45 0.27 100 0.02 GCF_003971365.1 1741 1813 1813 9 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003971565.1 HMT-817 AB70 Named Cultivated Vaginal (Abundance: High) HMT-817 Lactobacillus crispatus AB70 2 2367925 37.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/971/565/GCA_003971565.1_ASM397156v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus crispatus PRJNA431864 47770 SAMN08409124 ASM397156v1 Complete Genome Canu (followed by Circlator and Quiver) v. v1.1 2018-01-27T20:17:02.870 South Korea Korean vaginal fluid PacBio KRIBB 406.6x 97.7 99.03 0.09 99.93 0.6 GCF_003971565.1 2383 2521 2521 51 15 71 1 Lactobacillus_crispatus_homd_HMT_817 GCA_003977605.1 HMT-526 KCOM 3155 Named Cultivated Oral (Abundance: Low) HMT-526 Hoylesella koreensis KCOM 3155 2 2691540 43.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/977/605/GCA_003977605.1_ASM397760v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella koreensis PRJNA506504 2490854 SAMN10461963 ASM397760v1 Scaffold SPAdes v. 3.8.2 2018-11-22T02:04:11.303 South Korea: Gwangju subgingival plaque Illumina HiSeq Korean Collection for Oral Microbiology 1114.0x 97.78 0.37 99.91 0.05 GCF_003977605.1 RYYU01 2347 2419 2419 10 9 52 1 Hoylesella_koreensis_homd_HMT_526 GCA_003985305.1 HMT-833 173P27B1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 173P27B1 27 1940208 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/985/305/GCA_003985305.1_ASM398530v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA509208 480 SAMN10536194 ASM398530v1 Contig SPAdes v. 3.9.0 2018-12-09T08:41:05.466 USA: Buffalo, NY sputum Illumina HiSeq 2500 Institute for Genome Sciences, University of Maryland, Baltimore 102.0x 99.12 99.73 0.27 100 0.01 GCF_003985305.1 RYER01 1773 1829 1829 10 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003985315.1 HMT-833 5P54B2 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 5P54B2 2 1945525 41.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/985/315/GCA_003985315.1_ASM398531v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA509208 480 SAMN10536189 ASM398531v1 Contig canu v. 1.4 2018-12-09T08:41:05.380 USA: Buffalo, NY sputum PacBio Sequel Institute for Genome Sciences, University of Maryland, Baltimore 26.0x 99.2 99.73 0.27 100 0.02 GCF_003985315.1 RYES01 1756 1832 1832 9 14 52 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003985335.1 HMT-833 173P31B1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 173P31B1 18 1938288 41.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/985/335/GCA_003985335.1_ASM398533v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA509208 480 SAMN10536195 ASM398533v1 Contig SPAdes v. 3.9.0 2018-12-09T08:41:05.480 USA: Buffalo, NY sputum Illumina HiSeq 2500 Institute for Genome Sciences, University of Maryland, Baltimore 101.0x 99.13 99.73 0.27 100 0.01 GCF_003985335.1 RYEQ01 1775 1833 1833 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_003989155.1 HMT-188 HSID18069 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria HSID18069 35 2639394 56.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/155/GCA_003989155.1_ASM398915v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA492917 2419515 SAMN10118517 ASM398915v1 Contig SPAdes v. 3.11.0 2018-09-24T17:25:03.897 USA:Wisconsin nasal lavage Illumina MiSeq University of Wisconsin-Madison 322.2x 98.34 0 100 0.03 GCF_003989155.1 RBMG01 2268 2335 2335 14 4 48 1 Rothia_aeria_homd_HMT_188 GCA_003989165.1 HMT-059 HSID18036 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum HSID18036 245 2702312 56.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/165/GCA_003989165.1_ASM398916v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA492917 43769 SAMN10118515 ASM398916v1 Contig SPAdes v. 3.11.0 2018-09-24T17:25:03.867 USA:Wisconsin nasal lavage Illumina MiSeq University of Wisconsin-Madison 529.9x 97.42 99.89 2.06 100 1.99 GCF_003989165.1 RBME01 2493 2558 2558 8 7 49 1 Corynebacterium_propinquum_homd_HMT_059 GCA_003989225.1 HMT-060 HSID17576 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum HSID17576 28 2305392 55.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/225/GCA_003989225.1_ASM398922v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA492917 37637 SAMN10118510 ASM398922v1 Contig SPAdes v. 3.11.0 2018-09-24T17:25:03.787 USA:Wisconsin nasal lavage Illumina MiSeq University of Wisconsin-Madison 620.7x 98.51 99.67 0.78 99.99 0.34 GCF_003989225.1 RBLZ01 2081 2138 2138 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_003989245.1 HMT-060 HSID17564 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum HSID17564 66 2320839 55.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/245/GCA_003989245.1_ASM398924v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA492917 37637 SAMN10118508 ASM398924v1 Contig SPAdes v. 3.11.0 2018-09-24T17:25:03.757 USA:Wisconsin nasal lavage Illumina MiSeq University of Wisconsin-Madison 475.7x 98.42 99.67 1.06 100 0.39 GCF_003989245.1 RBLX01 2093 2156 2156 6 7 49 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_003989305.1 HMT-060 HSID17260 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum HSID17260 54 2328440 55.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/305/GCA_003989305.1_ASM398930v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA492917 37637 SAMN10118506 ASM398930v1 Contig SPAdes v. 3.11.0 2018-09-24T17:25:03.723 USA:Wisconsin nasal lavage Illumina MiSeq University of Wisconsin-Madison 531.0x 98.51 99.67 0.38 100 0.25 GCF_003989305.1 RBLV01 2111 2168 2168 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_003989375.1 HMT-060 HSID17241 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum HSID17241 39 2314806 55.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/375/GCA_003989375.1_ASM398937v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA492917 37637 SAMN10118502 ASM398937v1 Contig SPAdes v. 3.11.0 2018-09-24T17:25:03.663 USA:Wisconsin nasal lavage Illumina MiSeq University of Wisconsin-Madison 440.3x 98.51 99.67 0.33 100 0.22 GCF_003989375.1 RBLR01 2094 2151 2151 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_003989445.1 HMT-188 HSID18067 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria HSID18067 17 2641641 56.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/445/GCA_003989445.1_ASM398944v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA492917 2419514 SAMN10118516 ASM398944v1 Contig SPAdes v. 3.11.0 2018-09-24T17:25:03.880 USA:Wisconsin nasal lavage Illumina MiSeq University of Wisconsin-Madison 451.0x 98.34 0 100 0.02 GCF_003989445.1 RBMF01 2310 2378 2378 14 4 49 1 Rothia_aeria_homd_HMT_188 GCA_003989475.1 HMT-059 HSID18035 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum HSID18035 78 2548974 56.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/475/GCA_003989475.1_ASM398947v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA492917 43769 SAMN10118514 ASM398947v1 Contig SPAdes v. 3.11.0 2018-09-24T17:25:03.853 USA:Wisconsin nasal lavage Illumina MiSeq University of Wisconsin-Madison 592.7x 97.42 99.67 0.81 99.98 0.88 GCF_003989475.1 RBMD01 2308 2368 2368 7 5 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_003989495.1 HMT-060 HSID17575 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum HSID17575 29 2351912 55.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/495/GCA_003989495.1_ASM398949v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA492917 37637 SAMN10118509 ASM398949v1 Contig SPAdes v. 3.11.0 2018-09-24T17:25:03.770 USA:Wisconsin nasal lavage Illumina MiSeq University of Wisconsin-Madison 543.3x 98.44 99.67 0 100 0.03 GCF_003989495.1 RBLY01 2128 2187 2187 6 5 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_003989555.1 HMT-030 HSID17239 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-030 Corynebacterium afermentans HSID17239 31 2317331 64.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/555/GCA_003989555.1_ASM398955v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium afermentans PRJNA492917 38288 SAMN10118501 ASM398955v1 Contig SPAdes v. 3.11.0 2018-09-24T17:25:03.647 USA:Wisconsin nasal lavage Illumina MiSeq University of Wisconsin-Madison 758.5x 83.38 97.76 0 99.93 0.05 GCF_003989555.1 RBLQ01 2138 2209 2209 8 5 57 1 Corynebacterium_afermentans_homd_HMT_030 GCA_003990355.1 HMT-577 KCOM 3110 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens KCOM 3110 1 2458478 56.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/990/355/GCA_003990355.1_ASM399035v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens_B PRJNA511136 539 SAMN10622481 ASM399035v1 Complete Genome RS HGAP v. 3.0; SPAdes v. 3.8.2 2018-12-20T21:42:04.900 South Korea: Gwangju subgingival plaque PacBio; Illumina HiSeq Korean Collection for Oral Microbiology 803.0x 93.5 96.73 0.23 99.99 0.15 GCF_003990355.1 2329 2411 2411 16 12 53 1 Eikenella_corrodens_homd_HMT_577 GCA_003991995.1 HMT-779 3960 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 3960 69 1860088 39.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/991/995/GCA_003991995.1_ASM399199v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003992315 PRJNA506647 2490955 SAMN10465600 ASM399199v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.746 France stomatology Illumina NextSeq Institut Pasteur 75.1x 99.88 1.2 99.97 0.18 GCF_003991995.1 RQVI01 1629 1698 1698 21 5 42 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_003992005.1 HMT-779 VA139 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 VA139 76 2172276 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/005/GCA_003992005.1_ASM399200v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003992005 PRJNA506647 741830 SAMN10465603 ASM399200v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.800 France broncho alveolar fluid Illumina NextSeq Institut Pasteur 81.2x 99.28 0 99.98 0.34 GCF_003992005.1 RQVL01 1893 1966 1966 24 5 43 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_003992015.1 HMT-779 VA137 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 VA137 36 1902403 39.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/015/GCA_003992015.1_ASM399201v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003992015 PRJNA506647 741828 SAMN10465602 ASM399201v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.783 France wound Illumina NextSeq Institut Pasteur 83.2x 99.28 0 99.98 0.06 GCF_003992015.1 RQVK01 1640 1710 1710 23 5 41 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_003992055.1 HMT-779 CHU740 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 CHU740 35 1893839 39.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/055/GCA_003992055.1_ASM399205v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003992055 PRJNA506647 2490950 SAMN10465595 ASM399205v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.656 France withlow Illumina NextSeq Institut Pasteur 82.6x 99.88 0.2 99.79 0.11 GCF_003992055.1 RQVD01 1622 1693 1693 23 4 43 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_003992085.1 HMT-779 CHU732 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 CHU732 42 1972307 39.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/085/GCA_003992085.1_ASM399208v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003992015 PRJNA506647 2490949 SAMN10465594 ASM399208v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.640 France upper respiratory tract Illumina NextSeq Institut Pasteur 73.2x 99.28 0 99.97 0.06 GCF_003992085.1 RQVC01 1661 1735 1735 25 6 42 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_003992135.1 HMT-779 VA142 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 VA142 66 1969382 39.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/135/GCA_003992135.1_ASM399213v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003992135 PRJNA506647 741834 SAMN10465605 ASM399213v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.833 France gall blader Illumina NextSeq Institut Pasteur 77.1x 99.88 0.6 99.84 0.11 GCF_003992135.1 RQVN01 1770 1841 1841 24 5 41 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_003992175.1 HMT-780 VA141 Unnamed Cultivated Oral (Abundance: High) HMT-780 Veillonella sp. HMT-780 VA141 12 1806031 39.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/175/GCA_003992175.1_ASM399217v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp001553345 PRJNA506647 741833 SAMN10465604 ASM399217v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.816 France foot wound Illumina NextSeq Institut Pasteur 76.4x 99.28 0 99.98 0.02 GCF_003992175.1 RQVM01 1593 1660 1660 20 6 40 1 Veillonella_sp_HMT_780_homd_HMT_780 GCA_003992185.1 HMT-780 CNR 79/14 Unnamed Cultivated Oral (Abundance: High) HMT-780 Veillonella sp. HMT-780 CNR 79/14 51 1776932 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/185/GCA_003992185.1_ASM399218v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp001553345 PRJNA506647 2490954 SAMN10465599 ASM399218v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.726 France peri prosthetic tissue Illumina NextSeq Institut Pasteur 81.4x 99.88 0 99.95 0.04 GCF_003992185.1 RQVH01 1553 1624 1624 24 3 43 1 Veillonella_sp_HMT_780_homd_HMT_780 GCA_003992195.1 HMT-780 3627 Unnamed Cultivated Oral (Abundance: High) HMT-780 Veillonella sp. HMT-780 3627 34 1738782 39.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/195/GCA_003992195.1_ASM399219v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp001553345 PRJNA506647 2490953 SAMN10465598 ASM399219v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.710 France peritoneal fluid Illumina NextSeq Institut Pasteur 83.1x 99.88 0 99.98 0.03 GCF_003992195.1 RQVG01 1513 1579 1579 20 3 42 1 Veillonella_sp_HMT_780_homd_HMT_780 GCA_003992235.1 HMT-780 3913 Unnamed Cultivated Oral (Abundance: High) HMT-780 Veillonella sp. HMT-780 3913 15 1770519 39.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/235/GCA_003992235.1_ASM399223v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp001553345 PRJNA506647 2490952 SAMN10465597 ASM399223v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.690 France mouth fluid Illumina NextSeq Institut Pasteur 72.9x 99.28 0 99.98 0.12 GCF_003992235.1 RQVF01 1579 1645 1645 20 3 42 1 Veillonella_sp_HMT_780_homd_HMT_780 GCA_003992255.1 HMT-779 CHU110 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 CHU110 43 1881921 39.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/255/GCA_003992255.1_ASM399225v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003992255 PRJNA506647 2490947 SAMN10465592 ASM399225v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.600 France upper respiratory tract Illumina NextSeq Institut Pasteur 78.2x 99.88 0.5 99.93 0.11 GCF_003992255.1 RQVA01 1587 1657 1657 23 4 42 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_003992265.1 HMT-780 CHU594 Unnamed Cultivated Oral (Abundance: High) HMT-780 Veillonella sp. HMT-780 CHU594 23 1822704 39.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/265/GCA_003992265.1_ASM399226v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp001553345 PRJNA506647 2490948 SAMN10465593 ASM399226v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.620 France toe wound Illumina NextSeq Institut Pasteur 82.2x 99.88 0 99.97 0.1 GCF_003992265.1 RQVB01 1610 1676 1676 20 3 42 1 Veillonella_sp_HMT_780_homd_HMT_780 GCA_003992315.1 HMT-779 3891 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 3891 38 1890765 39.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/992/315/GCA_003992315.1_ASM399231v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003992315 PRJNA506647 2490951 SAMN10465596 ASM399231v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.673 France spermoculture Illumina NextSeq Institut Pasteur 72.9x 99.88 1.2 99.98 0.23 GCF_003992315.1 RQVE01 1653 1725 1725 21 7 43 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_003999875.1 HMT-779 3310 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 3310 16 1870378 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/999/875/GCA_003999875.1_ASM399987v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003999875 PRJNA506647 2490956 SAMN10465601 ASM399987v1 Contig SPAdes v. 3.6 2018-11-23T07:19:04.763 France stool Illumina NextSeq Institut Pasteur 80.1x 99.88 0.6 99.93 0.39 GCF_003999875.1 RQVJ01 1690 1758 1758 23 3 41 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_004000885.1 HMT-921 NBRC 15330 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-921 Paenibacillus glucanolyticus NBRC 15330 50 6150324 48.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/000/885/GCA_004000885.1_ASM400088v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus glucanolyticus PRJDB1362 1349777 SAMD00034163 ASM400088v1 Contig newbler v. 2.8 2015-09-16T17:00:13.000 United Kingdom Illumina HiSeq 1000 National Institute of Technology and Evaluation 93.0x 99.99 99.85 0.22 100 0.13 GCF_004000885.1 BIMC01 5677 5795 5795 64 3 50 1 Paenibacillus_glucanolyticus_homd_HMT_921 GCA_004006635.1 HMT-690 ATCC 25286 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum ATCC 25286 1 2678415 34.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/006/635/GCA_004006635.1_ASM400663v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA513186 143388 SAMN10697414 ASM400663v1 Complete Genome Unicycler v. 0.4.3 2019-01-06T10:58:03.070 NA NA Oxford Nanopore MiniION; Illumina MiSeq Virginia Tech 60.0x 99.96 100 0 100 0.71 GCF_004006635.1 2342 2427 2427 15 18 51 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_004015025.1 HMT-963 EB-AMDK-11 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-963 Akkermansia muciniphila EB-AMDK-11 1 2764311 55.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/015/025/GCA_004015025.1_ASM401502v1 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila PRJNA429088 239935 SAMN08329199 ASM401502v1 Complete Genome HGAP v. 3.0 2018-01-09T03:56:03.640 South Korea: Seoul Korean adult feces PacBio Korea Food Research Institute 124.0x 97.61 97.96 0 100 0.21 GCF_004015025.1 2289 2358 2358 5 9 54 1 Akkermansia_muciniphila_homd_HMT_963 GCA_004028355.1 HMT-745 CCUG 4207 Named Cultivated Pathogen (Abundance: Scarce) HMT-745 Streptococcus pyogenes CCUG 4207 1 1914862 38.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/028/355/GCA_004028355.1_ASM402835v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes PRJNA302716 1314 SAMN08915690 ASM402835v1 Complete Genome SPAdes v. 3.11 2018-04-11T11:00:07.370 United Kingdom:Manchester throat swab Illumina HiSeq; Oxford Nanopore MinION TAILORED-Treatment project 100 100 0 100 0.6 GCF_004028355.1 1891 2027 2027 50 18 67 1 Streptococcus_pyogenes_homd_HMT_745 GCA_004101885.1 HMT-614 KCCM 35418 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-614 Lysinibacillus fusiformis KCCM 35418 1 4785706 37.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/101/885/GCA_004101885.1_ASM410188v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus;s__Lysinibacillus fusiformis PRJNA397502 1421 SAMN07460135 ASM410188v1 Complete Genome SMRT analysis 2.3 v. HGAP protocol 2 2017-08-08T04:03:03.556 USA insects PacBio Kyungpook National University 245.9x 83.5 99.34 0.33 100 0.32 GCF_004101885.1 4678 4893 4893 90 28 96 1 Lysinibacillus_fusiformis_homd_HMT_614 GCA_004102925.1 HMT-590 ATCC(B) 19146 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-590 Brevundimonas diminuta ATCC(B) 19146 1 3551819 67.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/102/925/GCA_004102925.1_ASM410292v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__Brevundimonas diminuta PRJNA514930 293 SAMN10737780 ASM410292v1 Complete Genome Unicycler v. Unicycler v0.4.5 2019-01-13T22:26:03.590 missing Oxford Nanopore GridION Zhejiang Tianke High Technology Development Co.Ltd. 187.0x 97.77 100 0 100 0.61 GCF_004102925.1 3447 3521 3521 15 6 53 0 Brevundimonas_diminuta_homd_HMT_590 GCA_004104015.1 HMT-708 R5292 Named Cultivated Oral (Abundance: Scarce) HMT-708 Actinomyces oricola R5292 78 2930686 68.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/104/015/GCA_004104015.1_ASM410401v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oricola PRJNA510320 206043 SAMN10601821 ASM410401v1 Contig Velvet v. 1.2.09 2018-12-17T09:28:02.963 United Kingdom: Bury dental abscess Illumina Chinese Center for Disease Control and Prevention 60.0x 99.76 1.42 100 0.43 GCF_004104015.1 RYFV01 2433 2507 2507 15 4 54 1 Actinomyces_oricola_homd_HMT_708 GCA_004104465.2 HMT-718 LC_1315_18 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae LC_1315_18 1 2067650 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/104/465/GCA_004104465.2_ASM410446v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp030405845 PRJNA515889 729 SAMN10774168 ASM410446v2 Complete Genome CANU v. 1.7 2019-01-18T11:44:05.740 Italy: Lecco Urethral swab Oxford Nanopore MiniION University of Bern 40.0x 92.6 99.89 0.44 100 1.14 GCF_004104465.2 1973 2080 2080 29 19 58 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_004114655.2 HMT-374 JCM 15619 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-374 Cellulosimicrobium funkei JCM 15619 22 4379053 74.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/114/655/GCA_004114655.2_ASM411465v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium;s__Cellulosimicrobium funkei PRJNA515345 412439 SAMN10754122 ASM411465v2 Contig A5-miseq v. 2015 2019-01-15T21:49:05.553 China: Panjin soil Illumina HiSeq Dalian University of Technology 564.0x 100 0.67 100 0.42 GCF_004114655.2 SDBQ02 3903 3995 3995 26 3 62 1 Cellulosimicrobium_funkei_homd_HMT_374 GCA_004117035.1 HMT-076 SB1155 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri SB1155 1 2469323 32.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/117/035/GCA_004117035.1_ASM411703v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA427093 421000 SAMN08222613 ASM411703v1 Complete Genome HGAP v. 3 2017-12-21T03:38:02.666 South Korea marine PacBio Kyungpook National University 382.0x 80.34 99.73 0.05 100 0.13 GCF_004117035.1 2342 2470 2470 50 16 61 1 Staphylococcus_warneri_homd_HMT_076 GCA_004125365.1 HMT-076 TRPF4 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri TRPF4 33 2634550 32.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/125/365/GCA_004125365.1_ASM412536v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA420010 1292 SAMN08103245 ASM412536v1 Scaffold CLC Genomics Workbench v. 6.5.1 2017-11-28T05:34:04.033 Brazil: Trindade Island Marine water sample collected about 100 m from Turtle Beach Illumina MiSeq Universidade Federal de Vicosa 350.0x 99.63 99.73 0.21 100 0.52 GCF_004125365.1 PJLY01 2537 2663 2663 49 15 61 1 Staphylococcus_warneri_homd_HMT_076 GCA_004125815.1 HMT-073 NU89 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis NU89 22 1962410 42.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/125/815/GCA_004125815.1_ASM412581v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001072385 PRJNA454893 113107 SAMN09060970 ASM412581v1 Contig SPAdes v. Dec-2017 2018-05-03T16:22:03.393 United Kingdom Middle ear effusion fluid Illumina HiSeq Newcastle University 30.0x 94.08 100 0 99.96 0.01 GCF_004125815.1 QFBE01 1817 1908 1908 37 5 48 1 Streptococcus_australis_homd_HMT_073 GCA_004127205.1 HMT-411 NU87 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis NU87 29 2081775 41.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/127/205/GCA_004127205.1_ASM412720v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_Z PRJNA454893 1318 SAMN09060971 ASM412720v1 Contig SPAdes v. Dec-2017 2018-05-03T16:22:03.410 United Kingdom Adenoid Illumina HiSeq Newcastle University 30.0x 94.19 100 0.14 99.99 0 GCF_004127205.1 QEWI01 1999 2093 2093 37 6 50 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_004134945.1 HMT-690 KG35 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum KG35 114 2078803 35.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/134/945/GCA_004134945.1_ASM413494v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA513072 859 SAMN10695581 ASM413494v1 Contig SPAdes v. 3.11.1 2019-01-04T16:14:03.686 USA uterine swab Illumina MiSeq University of Florida 0.9x 96.16 100 0 100 0.23 GCF_004134945.1 SBAP01 1931 2002 2002 16 3 51 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_004134955.1 HMT-690 KG34 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum KG34 112 2049610 35.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/134/955/GCA_004134955.1_ASM413495v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA513072 859 SAMN10695580 ASM413495v1 Contig SPAdes v. 3.11.1 2019-01-04T16:14:03.663 USA uterine swab Illumina MiSeq University of Florida 0.9x 98.9 100 0.33 100 1.15 GCF_004134955.1 SBAO01 1933 2005 2005 17 6 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_004136195.1 HMT-530 DSM 1897 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes DSM 1897 1 2495002 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/136/195/GCA_004136195.1_ASM413619v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA429715 1122995 SAMN08348522 ASM413619v1 Complete Genome HGAP v. 3 2018-01-11T05:33:03.400 missing PacBio University of Helsinki 446.0x 99.99 99.43 0.03 100 0.11 GCF_004136195.1 2305 2385 2385 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_004136215.1 HMT-530 KPA171202 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes KPA171202 1 2560634 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/136/215/GCA_004136215.1_ASM413621v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA429713 267747 SAMN08348521 ASM413621v1 Complete Genome HGAP v. 3 2018-01-11T05:33:03.380 missing PacBio University of Helsinki 351.0x 99.16 100 0 100 0.12 GCF_004136215.1 2362 2443 2443 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_004138065.1 HMT-072 WP1a Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum WP1a 98 2824576 59.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/138/065/GCA_004138065.1_ASM413806v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA420593 43770 SAMN10723573 ASM413806v1 Scaffold SPAdes v. 3.9.0 2019-01-10T15:13:06.030 USA: Missouri bloodstream of patient with high level daptomycin resistance Illumina HiSeq Washington University 60.0x 98.64 99.23 0.09 100 0.02 GCF_004138065.1 SBIF01 2626 2697 2697 8 3 59 1 Corynebacterium_striatum_homd_HMT_072 GCA_004138385.1 HMT-346 TM7_ANC_G1_1 Phylotype Uncultivated Oral (Abundance: High) HMT-346 Saccharimonas sp. HMT-346 TM7_ANC_G1_1 71 756930 48.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/138/385/GCA_004138385.1_ASM413838v1 Undefined PRJNA384792 1986206 SAMN06916703 ASM413838v1 Scaffold SPAdes v. 3.9 2017-05-08T14:13:05.516 Germany ancient dental calculus Illumina HiSeq University of Washington 100.0x GCF_004138385.1 PQNZ01 751 795 795 6 2 36 0 Saccharimonas_sp_HMT_346_homd_HMT_346 GCA_004138395.1 HMT-367 TM7_G3_2_Rum_HOT_351B Named NVP Uncultivated Oral (Abundance: Scarce) HMT-367 Nanosyncoccus alces TM7_G3_2_Rum_HOT_351B 6 726940 43.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/138/395/GCA_004138395.1_ASM413839v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus alces PRJNA384792 2171997 SAMN08449951 ASM413839v1 Contig SPAdes v. 3.9 2018-02-01T03:29:03.340 not applicable rumen Illumina HiSeq University of Washington 100.0x 63.17 0 98.04 0.07 GCF_004138395.1 PRLM01 712 762 762 2 2 46 0 GCA_004138405.1 HMT-371 TM7_KMM_G3_1_HOT_351 Named NVP Uncultivated Oral (Abundance: Scarce) HMT-371 Nanosyncoccus nanoralicus TM7_KMM_G3_1_HOT_351 29 563736 40.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/138/405/GCA_004138405.1_ASM413840v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus nanoralicus PRJNA384792 2171996 SAMN08449952 ASM413840v1 Scaffold SPAdes v. 3.9 2018-02-01T03:29:03.356 not applicable Oral cavity Illumina HiSeq University of Washington 100.0x 74.84 1.72 69.8 1.26 GCF_004138405.1 PRLL01 512 544 544 1 2 29 0 Nanosyncoccus_nanoralicus_homd_HMT_371 GCA_004138445.1 HMT-356 TM7_ EAM_G5_2_HOT_356 Named NVP Uncultivated Oral (Abundance: Medium) HMT-356 Nanoperiomorbus periodonticus TM7_ EAM_G5_2_HOT_356 24 730081 50.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/138/445/GCA_004138445.1_ASM413844v1 Undefined PRJNA384792 2171989 SAMN08449949 ASM413844v1 Contig SPAdes v. 3.9 2018-02-01T03:29:03.306 not applicable Oral cavity Illumina HiSeq University of Washington 100.0x GCF_004138445.1 PRLN01 661 710 710 2 2 45 0 Nanoperiomorbus_periodonticus_homd_HMT_356 GCA_004138455.1 HMT-356 TM7_ EAM_G5_1_HOT_356 Named NVP Uncultivated Oral (Abundance: Medium) HMT-356 Nanoperiomorbus periodonticus TM7_ EAM_G5_1_HOT_356 35 740889 50.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/138/455/GCA_004138455.1_ASM413845v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanoperiomorbaceae;g__Nanoperiomorbus;s__Nanoperiomorbus periodonticus PRJNA384792 2171989 SAMN08449950 ASM413845v1 Contig SPAdes v. 3.9 2018-02-01T03:29:03.326 not applicable Oral cavity Illumina HiSeq University of Washington 100.0x 56.98 0 94.78 0.11 GCF_004138455.1 PRLO01 659 705 705 2 1 43 0 Nanoperiomorbus_periodonticus_homd_HMT_356 GCA_004151455.1 HMT-870 TM7_CMJM_G6_1_HOT_870 Named NVP Uncultivated Oral (Abundance: Medium) HMT-870 Nanogingivalis gingivitcus TM7_CMJM_G6_1_HOT_870 17 625762 32.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/151/455/GCA_004151455.1_ASM415145v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanogingivalaceae;g__Nanogingivalis;s__Nanogingivalis gingivitcus PRJNA384792 2171992 SAMN08449953 ASM415145v1 Contig SPAdes v. 3.9 2018-02-01T03:29:03.370 not applicable Oral cavity Illumina HiSeq University of Washington 100.0x 65.31 0 98.66 0 GCF_004151455.1 PRLK01 596 640 640 3 3 38 0 GCA_004166885.1 HMT-073 bf_0095 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis bf_0095 7 1980231 42.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/166/885/GCA_004166885.1_ASM416688v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp004166885 PRJNA496358 2478956 SAMN10239558 ASM416688v1 Contig SPAdes v. 3.9.0 2018-10-15T03:43:04.407 USA: Cambridge stool Illumina HiSeq Broad Institute 63.1x 100 0 99.98 0.01 GCF_004166885.1 RCYU01 1880 1962 1962 36 3 42 1 Streptococcus_australis_homd_HMT_073 GCA_004166915.1 HMT-755 bf_0095 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius bf_0095 26 2112364 40.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/166/915/GCA_004166915.1_ASM416691v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA496358 1304 SAMN10239557 ASM416691v1 Contig SPAdes v. 3.9.0 2018-10-15T03:43:04.393 USA: Cambridge stool Illumina HiSeq Broad Institute 101.4x 96.6 99.84 0.58 100 0.03 GCF_004166915.1 RCYT01 1888 1971 1971 31 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_004166985.1 HMT-156 bj_0095 Named Cultivated Oral (Abundance: High) HMT-156 Veillonella nakazawae bj_0095 14 2075021 38.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/166/985/GCA_004166985.1_ASM416698v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella nakazawae PRJNA496358 39778 SAMN10239560 ASM416698v1 Contig SPAdes v. 3.9.0 2018-10-15T03:43:04.440 USA: Cambridge stool Illumina HiSeq Broad Institute 31.2x 93.31 100 0 99.99 0.21 GCF_004166985.1 RCYW01 1855 1915 1915 18 4 37 1 Veillonella_nakazawae_homd_HMT_156 GCA_004214925.1 HMT-619 H3 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis H3 165 2311066 48.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/214/925/GCA_004214925.1_ASM421492v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA521311 837 SAMN10882880 ASM421492v1 Contig SPAdes v. 3.10.1 2019-02-07T07:41:06.300 Chile: Santiago subgingival plate Illumina MiSeq Castro Lab 28.0x 98.54 99.92 0.47 99.99 0.02 GCF_004214925.1 SGAZ01 1951 2014 2014 14 3 45 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_004214945.1 HMT-619 CP3 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis CP3 118 2251246 48.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/214/945/GCA_004214945.1_ASM421494v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA521311 837 SAMN10882879 ASM421494v1 Contig SPAdes v. 3.10.0 2019-02-07T07:41:06.276 Chile: Santiago subgingival plate Illumina MiSeq Castro Lab 300.0x 98.46 99.92 0 99.99 0.03 GCF_004214945.1 SGBA01 1893 1954 1954 10 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_004291115.2 HMT-789 13T0028 Named Cultivated Skin (Abundance: Medium) HMT-789 Staphylococcus saccharolyticus 13T0028 2 2352566 32.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/291/115/GCA_004291115.2_ASM429111v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus saccharolyticus PRJNA473062 33028 SAMN09259155 ASM429111v2 Complete Genome Unicycler v. v0.4.6 2018-05-25T05:55:03.880 Sweden: Oerebro implant-asscoiated infection Oxford Nanopore MinION; Illumina MiSeq Aarhus University 205.0x 99.98 96.99 1.26 99.29 0.18 GCF_004291115.2 2630 2758 2758 52 16 59 1 Staphylococcus_saccharolyticus_homd_HMT_789 GCA_004291125.1 HMT-789 05B0362 Named Cultivated Skin (Abundance: Medium) HMT-789 Staphylococcus saccharolyticus 05B0362 10 2349349 32.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/291/125/GCA_004291125.1_ASM429112v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus saccharolyticus PRJNA473062 33028 SAMN09259153 ASM429112v1 Contig SPAdes v. 3.11 2018-05-25T05:55:03.843 Sweden: Oerebro blood Illumina MiSeq Aarhus University 289.0x 99.99 96.99 1.26 99.33 0.17 GCF_004291125.1 QHKH01 2655 2769 2769 52 8 53 1 Staphylococcus_saccharolyticus_homd_HMT_789 GCA_004291175.2 HMT-789 DVP5-16-4677 Named Cultivated Skin (Abundance: Medium) HMT-789 Staphylococcus saccharolyticus DVP5-16-4677 2 2396786 32.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/291/175/GCA_004291175.2_ASM429117v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus saccharolyticus PRJNA473062 33028 SAMN09259159 ASM429117v2 Complete Genome Unicycler v. v0.4.6 2018-05-25T05:55:03.943 Sweden: Oerebro implant-asscoiated infection Oxford Nanopore MinION; Illumina MiSeq Aarhus University 188.0x 97.93 95.05 1.8 99.95 0.23 GCF_004291175.2 2621 2748 2748 51 16 59 1 Staphylococcus_saccharolyticus_homd_HMT_789 GCA_004291195.1 HMT-789 12B0021 Named Cultivated Skin (Abundance: Medium) HMT-789 Staphylococcus saccharolyticus 12B0021 11 2349395 32.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/291/195/GCA_004291195.1_ASM429119v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus saccharolyticus PRJNA473062 33028 SAMN09259154 ASM429119v1 Contig SPAdes v. 3.11 2018-05-25T05:55:03.866 Sweden: Oerebro blood Illumina MiSeq Aarhus University 260.0x 99.99 96.99 1.26 98.74 0.19 GCF_004291195.1 QHKG01 2654 2771 2771 52 9 55 1 Staphylococcus_saccharolyticus_homd_HMT_789 GCA_004295525.1 HMT-812 ATCC 43504 Named Cultivated Gastrointestinal Tract (Abundance: Low) HMT-812 Helicobacter pylori ATCC 43504 1 1680829 38.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/295/525/GCA_004295525.1_HPATCC43504_01 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori PRJDB4521 210 SAMD00051588 HPATCC43504_01 Complete Genome Newbler v. 2.6 2019-01-18T01:00:35.407 missing 454 GS FLX; ABI 3730; illumina Microbiology, Graduate School of Medical Sciences, Kyushu University 30.0x 99.99 99.36 0 99.99 0.02 GCF_004295525.1 1609 1668 1668 18 4 36 1 Helicobacter_pylori_homd_HMT_812 GCA_004328515.1 HMT-971 A1C1 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-971 Bacteroides uniformis A1C1 1 4502190 46.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/328/515/GCA_004328515.1_ASM432851v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis PRJNA522935 2528203 SAMN10961207 ASM432851v1 Complete Genome SMRT Cell 8Pac v. 3 2019-02-18T00:30:04.406 missing feces PacBio RSII Korea Research Institute of Bioscience & Biotechnology (KRIBB) 110.0x 99.26 0.56 99.99 0.11 GCF_004328515.1 3812 3916 3916 28 12 64 0 Bacteroides_uniformis_homd_HMT_971 GCA_004331935.1 HMT-734 521 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 521 1 2041494 39.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/331/935/GCA_004331935.1_ASM433193v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA524762 1313 SAMN11032549 ASM433193v1 Complete Genome Unicycler v. DEC-2018 2019-02-28T01:10:05.816 South Korea sputum PacBio RSII Korea Basic Science Institute 259.0x 98.74 99.49 0.21 100 0.14 GCF_004331935.1 2046 2196 2196 79 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_004332555.2 HMT-621 TFG-B2 Named Cultivated Pathogen (Abundance: Scarce) HMT-621 Neisseria gonorrhoeae TFG-B2 2 2224611 52.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/332/555/GCA_004332555.2_ASM433255v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria gonorrhoeae PRJNA451380 485 SAMN10031335 ASM433255v2 Complete Genome HGAP v. 3.0 2018-09-11T01:59:03.693 Australia: New South Wales Clinical sample: throat PacBio RSII The University of Queensland 495.0x 99.37 99.82 0.21 99.97 0.1 GCF_004332555.2 2229 2318 2318 21 12 55 1 Neisseria_gonorrhoeae_homd_HMT_621 GCA_004336685.1 HMT-829 ATCC 14018 Named Cultivated Vaginal (Abundance: High) HMT-829 Gardnerella vaginalis ATCC 14018 14 1657111 41.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/336/685/GCA_004336685.1_ASM433668v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium vaginale PRJNA524873 585528 SAMN11037755 ASM433668v1 Contig SPAdes v. 5.0.0.0.0 2019-02-28T12:32:03.750 NA patient IonTorrent Kingston University 204.7x 99.98 99.47 0 99.99 0.59 GCF_004336685.1 SJWZ01 1269 1333 1333 15 3 45 1 Gardnerella_vaginalis_homd_HMT_829 GCA_004342465.1 HMT-024 DSM 15264 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-024 Schlegelella thermodepolymerans DSM 15264 35 4033925 70.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/342/465/GCA_004342465.1_ASM434246v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Caldimonas;s__Caldimonas thermodepolymerans PRJNA520318 215580 SAMN10866314 ASM434246v1 Scaffold SPAdes v. 3.12.0 2019-02-02T00:14:42.050 Portugal missing Illumina DOE Joint Genome Institute 372.0x 99.79 99.84 0 100 0.01 GCF_004342465.1 SLXF01 3786 3861 3861 17 3 54 1 Schlegelella_thermodepolymerans_homd_HMT_024 GCA_004342845.1 HMT-630 DSM 23917 Named Cultivated Oral (Abundance: Scarce) HMT-630 Bacteroides heparinolyticus DSM 23917 69 3643328 47.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/342/845/GCA_004342845.1_ASM434284v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides heparinolyticus PRJNA519314 28113 SAMN10864733 ASM434284v1 Scaffold SPAdes v. 3.12.0 2019-02-01T22:23:10.596 missing missing Illumina DOE Joint Genome Institute 411.0x 98.33 0.19 99.99 0.03 GCF_004342845.1 SLXB01 3033 3142 3142 43 5 60 1 Bacteroides_heparinolyticus_homd_HMT_630 GCA_004346635.1 HMT-368 55 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea 55 80 3549427 71.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/346/635/GCA_004346635.1_ASM434663v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA500537 321318 SAMN10363100 ASM434663v1 Scaffold SPAdes v. 3.11.0 2018-11-01T21:28:07.257 missing missing PacBio DOE Joint Genome Institute 422.0x 96.49 99.41 0.2 100 0.07 GCF_004346635.1 SMCX01 3243 3332 3332 21 5 62 1 Dietzia_cinnamea_homd_HMT_368 GCA_004346925.1 HMT-663 ASS1 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-663 Stenotrophomonas maltophilia ASS1 1 4564481 66.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/346/925/GCA_004346925.1_ASM434692v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas maltophilia_A PRJNA478604 2282124 SAMN09521105 ASM434692v1 Complete Genome SPAdes v. 3.11.1 2018-06-29T18:34:05.343 Mexico: Tabasco soil Illumina MiSeq CBG Instituto Politecnico Nacional 100.0x 100 0.38 100 0 GCF_004346925.1 4096 4210 4210 31 7 75 1 Stenotrophomonas_maltophilia_homd_HMT_663 GCA_004354345.1 HMT-003 AAP5 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-003 Sphingomonas glacialis AAP5 4 4382271 65.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/354/345/GCA_004354345.1_ASM435434v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas;s__Sphingomonas glacialis PRJNA526624 1523415 SAMN11104988 ASM435434v1 Complete Genome HGAP3 v. 1SC 2019-03-12T07:49:04.823 Austria: lake Gossenkoellesee, water column of an alpine lake PacBio Institute of Microbiology, CAS 178.7x 99.57 1.05 100 2.42 GCF_004354345.1 4065 4160 4160 30 9 55 1 Sphingomonas_glacialis_homd_HMT_003 GCA_004354485.1 HMT-804 ATCC 19435 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-804 Lactococcus lactis ATCC 19435 82 2627820 35.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/354/485/GCA_004354485.1_ASM435448v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis PRJNA434373 1360 SAMN08554999 ASM435448v1 Scaffold ABySS v. 2.0 2018-02-16T07:36:03.470 Denmark missing Illumina Carlsberg Research Laboratory 60.0x 99.98 99.62 1.14 100 0.59 GCF_004354485.1 PUFC01 2600 2733 2733 43 25 64 1 Lactococcus_lactis_homd_HMT_804 GCA_004354505.1 HMT-152 ATCC 19258 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-152 Streptococcus thermophilus ATCC 19258 86 2074705 38.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/354/505/GCA_004354505.1_ASM435450v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus PRJNA433425 1308 SAMN08493372 ASM435450v1 Scaffold ABySS v. 2.0 2018-02-07T19:40:03.217 Denmark missing Illumina Carlsberg Research Laboratory 60.0x 99.98 99.89 0.4 99.98 0.34 GCF_004354505.1 PRKU01 2208 2358 2358 94 9 46 1 Streptococcus_thermophilus_homd_HMT_152 GCA_004354655.1 HMT-716 ATCC 25302 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-716 Lacticaseibacillus paracasei ATCC 25302 125 3003415 46.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/354/655/GCA_004354655.1_ASM435465v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei PRJNA434388 47714 SAMN08555498 ASM435465v1 Scaffold ABySS v. 2.0 2018-02-16T08:36:02.503 Denmark missing Illumina Carlsberg Research Laboratory 60.0x 99.99 99.46 0 99.99 0.26 GCF_004354655.1 PUFK01 2922 3022 3022 32 9 58 1 Lacticaseibacillus_paracasei_homd_HMT_716 GCA_004354685.1 HMT-883 ATCC 8041 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-883 Lactiplantibacillus pentosus ATCC 8041 42 3701834 46.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/354/685/GCA_004354685.1_ASM435468v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus PRJNA434401 1589 SAMN08556546 ASM435468v1 Scaffold ABySS v. 2.0 2018-02-16T10:08:03.226 Denmark missing Illumina Carlsberg Research Laboratory 60.0x 99.99 99.38 2.16 100 1.12 GCF_004354685.1 PUFM01 3331 3465 3465 43 19 71 1 Lactiplantibacillus_pentosus_homd_HMT_883 GCA_004354745.1 HMT-881 ATCC 4005 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-881 Lentilactobacillus buchneri ATCC 4005 76 2551787 44.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/354/745/GCA_004354745.1_ASM435474v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri PRJNA434409 1581 SAMN08556557 ASM435474v1 Scaffold ABySS v. 2.0 2018-02-16T10:41:03.193 Denmark missing Illumina Carlsberg Research Laboratory 60.0x 99.98 99.06 0 100 0.51 GCF_004354745.1 PUFP01 2398 2508 2508 40 7 62 1 Lentilactobacillus_buchneri_homd_HMT_881 GCA_004362455.1 HMT-851 16-549009 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus 16-549009 49 1843335 38.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/362/455/GCA_004362455.1_ASM436245v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA504773 726 SAMN10405313 ASM436245v1 Scaffold SPAdes v. 3.6.2 2018-11-09T09:43:04.647 United Kingdom: Belfast, North sputum Illumina NextSeq UMC Utrecht 437.0x 95.94 99.66 0.34 100 0 GCF_004362455.1 RWKG01 1753 1836 1836 31 4 47 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_004365845.1 HMT-127 AtDRG32 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis AtDRG32 15 2179656 31.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/365/845/GCA_004365845.1_ASM436584v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA333996 1938892 SAMN05446790 ASM436584v1 Scaffold SPAdes v. 3.10.1 2016-07-27T01:02:03.763 missing missing Illumina HiSeq DOE Joint Genome Institute 629.0x 99.1 0.57 100 0.01 GCF_004365845.1 SODE01 2077 2196 2196 51 8 59 1 Staphylococcus_hominis_homd_HMT_127 GCA_004368395.1 HMT-851 HI2028 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus HI2028 17 1848731 38.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/368/395/GCA_004368395.1_ASM436839v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_N PRJNA268277 726 SAMN03217745 ASM436839v1 Contig SPAdes v. 3.0.0 2014-11-24T04:18:49.193 USA: Oklahoma blood Illumina HiSeq Murdoch University 184.0x 95.67 99.66 0.11 100 0.02 GCF_004368395.1 JTLX01 1722 1816 1816 30 10 53 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_004368535.1 HMT-851 ATCC 33390 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus ATCC 33390 14 1828364 38.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/368/535/GCA_004368535.1_ASM436853v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA268281 726 SAMN03217754 ASM436853v1 Contig SPAdes v. 3.0.0 2014-11-24T05:00:52.323 USA: South Carolina sputum from South Carolina Dept. of Health and Environmental Control Illumina HiSeq Murdoch University 203.0x 99.99 99.66 0 100 0 GCF_004368535.1 JTLY01 1701 1787 1787 27 4 54 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_004519295.1 HMT-374 JCM 14302 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-374 Cellulosimicrobium funkei JCM 14302 19 4377803 74.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/519/295/GCA_004519295.1_ASM451929v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium;s__Cellulosimicrobium funkei PRJNA526228 264251 SAMN11090741 ASM451929v1 Contig A5-miseq v. 2015 2019-03-08T14:13:03.876 China: Dalian Illumina HiSeq Dalian University of Technology 693.0x 99.99 100 0.67 100 0.49 GCF_004519295.1 SOZH01 3902 3994 3994 26 3 62 1 Cellulosimicrobium_funkei_homd_HMT_374 GCA_004525795.1 HMT-688 CCUG 14476 Named Cultivated Oral (Abundance: Medium) HMT-688 Actinomyces viscosus CCUG 14476 107 3336376 69.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/525/795/GCA_004525795.1_ASM452579v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces viscosus PRJNA305687 1656 SAMN11246704 ASM452579v1 Contig CLC Genomics Workbench v. 11 2019-03-25T07:01:04.116 USA periodontal disease in hamsters Illumina HiSeq University of Gothenburg - CCUG 814.0x 99.98 100 0.59 99.99 0.17 GCF_004525795.1 SPDW01 2758 2829 2829 14 3 53 1 Actinomyces_viscosus_homd_HMT_688 GCA_004563855.1 HMT-587 1C11 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa 1C11 97 2536666 53.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/563/855/GCA_004563855.1_ASM456385v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA480027 2047 SAMN11249661 ASM456385v1 Contig SPAdes v. v3.13.0 2019-03-25T10:43:04.360 USA: Durham, NH, Adams Point root nodule Illumina HiSeq University of New Hampshire 210.5x 96.6 99.34 3.97 100 4.16 GCF_004563855.1 SPNF01 2224 2296 2296 12 7 52 1 Rothia_dentocariosa_homd_HMT_587 GCA_004563945.1 HMT-197 4R-31 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-197 Kocuria rhizophila 4R-31 26 2659245 70.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/563/945/GCA_004563945.1_ASM456394v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria rhizophila PRJNA480027 72000 SAMN11249666 ASM456394v1 Contig SPAdes v. v3.13.0 2019-03-25T10:43:04.453 USA: Durham, NH, Adams Point root nodule Illumina HiSeq University of New Hampshire 571.5x 97.93 98.68 0 100 0.22 GCF_004563945.1 SPNK01 2281 2355 2355 16 6 51 1 Kocuria_rhizophila_homd_HMT_197 GCA_004614315.1 HMT-550 JK3137 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus JK3137 1 2955000 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/614/315/GCA_004614315.1_ASM461431v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA384212 1280 SAMN06830443 ASM461431v1 Complete Genome HGAP v. RS_HGAP Assembly.2 2017-04-25T13:20:03.623 Canada: Calgary unknown PacBio University of Calgary 366.0x 99.9 99.51 0.64 100 0.26 GCF_004614315.1 2797 2995 2995 116 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_004635725.1 HMT-828 J693 Named Cultivated Pathogen (Abundance: Scarce) HMT-828 Bordetella pertussis J693 1 4105318 67.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/635/725/GCA_004635725.1_ASM463572v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella;s__Bordetella pertussis PRJNA279196 520 SAMN08524478 ASM463572v1 Complete Genome HGAP v. 3 2018-02-13T10:43:04.607 USA: CO missing PacBio RSII; Illumina MiSeq Centers for Disease Control and Prevention 196.0x 99.87 100 0.47 99.92 0.4 GCF_004635725.1 3914 4003 4003 15 9 64 1 Bordetella_pertussis_homd_HMT_828 GCA_004635905.1 HMT-828 J603 Named Cultivated Pathogen (Abundance: Scarce) HMT-828 Bordetella pertussis J603 1 4112699 67.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/635/905/GCA_004635905.1_ASM463590v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella;s__Bordetella pertussis PRJNA279196 520 SAMN08524459 ASM463590v1 Complete Genome HGAP v. 3; Circlator v. 1.5.1 2018-02-13T10:43:04.327 USA: NY missing PacBio RSII; Illumina MiSeq Centers for Disease Control and Prevention 316.0x 99.87 100 0.47 99.92 0.46 GCF_004635905.1 3904 3993 3993 15 9 64 1 Bordetella_pertussis_homd_HMT_828 GCA_004772215.1 HMT-550 O268 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus O268 1 2841948 32.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/772/215/GCA_004772215.1_ASM477221v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA528119 1280 SAMN11174937 ASM477221v1 Complete Genome SPAdes v. 3.6 2019-03-19T21:14:03.473 France mastitis Illumina HiSeq UFMG 277.0x 98.91 99.49 0.08 100 0.21 GCF_004772215.1 2656 2846 2846 115 14 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_004785935.1 HMT-415 DSM 26920 Named Cultivated Oral (Abundance: Medium) HMT-415 Streptococcus rubneri DSM 26920 4 2160087 41.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/785/935/GCA_004785935.1_ASM478593v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus rubneri PRJNA531058 1234680 SAMN11349107 ASM478593v1 Contig SPAdes v. 3.8.2 2019-04-04T22:23:05.603 Germany: Karlsruhe throat of a healthy human volunteer Illumina HiSeq Korean Collection for Oral Microbiology 912.6x 99.96 99.66 0.42 99.96 0.06 GCF_004785935.1 SRRP01 1981 2063 2063 36 5 40 1 Streptococcus_rubneri_homd_HMT_415 GCA_004793845.1 HMT-193 NM47_B9-13 Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum NM47_B9-13 12 2643072 59.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/793/845/GCA_004793845.1_ASM479384v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJNA474907 2516957 SAMN10878301 ASM479384v1 Contig Spades v. 3.10.0 2019-02-05T17:25:04.750 Canada: Toronto gut Illumina MiSeq University of Toronto 600.0x 100 0 99.99 0.29 GCF_004793845.1 SRYP01 2577 2650 2650 24 3 46 0 Cutibacterium_modestum_homd_HMT_193 GCA_004803795.1 HMT-748 ATCC 33238 Named Cultivated Oral (Abundance: Medium) HMT-748 Campylobacter rectus ATCC 33238 1 2571679 44.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/803/795/GCA_004803795.1_ASM480379v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A rectus PRJNA284987 203 SAMN03737987 ASM480379v1 Complete Genome Newbler v. 2.6 2015-05-27T17:03:40.000 USA: Boston oral Sanger dideoxy sequencing; 454; Illumina; PacBio USDA, ARS, WRRC 814.0x 99.99 98.76 0.45 99.92 0.07 GCF_004803795.1 2327 2388 2388 5 6 49 1 Campylobacter_rectus_homd_HMT_748 GCA_004803815.1 HMT-763 ATCC 51146 Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae ATCC 51146 1 2097887 45.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/803/815/GCA_004803815.1_ASM480381v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae PRJNA284988 204 SAMN03737988 ASM480381v1 Complete Genome Newbler v. 2.6 2015-05-27T17:03:40.000 Japan: Showa oral Sanger dideoxy sequencing; 454; Illumina USDA, ARS, WRRC 809.0x 99.88 0.26 99.87 0.09 GCF_004803815.1 2005 2065 2065 5 6 48 1 Campylobacter_showae_homd_HMT_763 GCA_005157865.1 HMT-880 Koumiss Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-880 Enterococcus durans Koumiss 1 2930257 38.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/157/865/GCA_005157865.1_ASM515786v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B durans PRJNA445914 2138084 SAMN08802897 ASM515786v1 Complete Genome HGAP v. 3 2018-03-27T22:40:03.656 China PacBio Inner Mongolia University for the Nationalities 209.0x 99.25 0.75 100 0.86 GCF_005157865.1 2758 2905 2905 58 18 70 1 Enterococcus_durans_homd_HMT_880 GCA_005158025.1 HMT-604 FC Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-604 Enterococcus faecalis FC 6 3183730 37.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/158/025/GCA_005158025.1_ASM515802v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis PRJNA445927 1351 SAMN08803040 ASM515802v1 Complete Genome HGPA v. 3 2018-03-28T00:45:13.543 China milk PacBio Inner Mongolia University for the Nationalities 154.0x 99.1 99.63 0.39 100 1.11 GCF_005158025.1 3104 3260 3260 80 12 63 1 Enterococcus_faecalis_homd_HMT_604 GCA_005162405.1 HMT-745 emm56 Named Cultivated Pathogen (Abundance: Scarce) HMT-745 Streptococcus pyogenes emm56 1 1825427 38.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/162/405/GCA_005162405.1_ASM516240v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes PRJNA454341 1314 SAMN10793305 ASM516240v1 Complete Genome HGAP v. 2 2019-01-23T13:05:04.707 Australia skin PacBio University of Melbourne 80.0x 98.77 99.85 1.65 99.99 0.2 GCF_005162405.1 1747 1881 1881 48 18 67 1 Streptococcus_pyogenes_homd_HMT_745 GCA_005221285.1 HMT-610 ATCC 13120 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens ATCC 13120 1 2231882 49.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/221/285/GCA_005221285.1_ASM522128v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens PRJNA533546 484 SAMN11461057 ASM522128v1 Complete Genome SPAdes v. NA 2019-04-18T09:22:03.203 not applicable not applicable Illumina MiSeq and Oxford Nanopore Kings College London 30.0x 99.99 99.62 0.34 100 0.14 GCF_005221285.1 2168 2265 2265 19 12 65 1 Neisseria_flavescens_homd_HMT_610 GCA_005221305.1 HMT-476 ATCC 49275 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava ATCC 49275 1 2195659 49.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/221/305/GCA_005221305.1_ASM522130v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA533546 28449 SAMN11461056 ASM522130v1 Complete Genome SPAdes v. NA 2019-04-18T09:22:03.180 not applicable not applicable Illumina MiSeq and Oxford Nanopore Kings College London 30.0x 99.99 99.92 0.34 100 0.42 GCF_005221305.1 2046 2152 2152 35 12 58 1 Neisseria_subflava_homd_HMT_476 GCA_005221325.1 HMT-485 CFBP5499 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-485 Agrobacterium tumefaciens CFBP5499 6 6138594 59.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/221/325/GCA_005221325.1_ASM522132v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium;s__Agrobacterium sp900012625 PRJNA534389 358 SAMN11489449 ASM522132v1 Complete Genome Velvet v. 1.2.10 2019-04-24T03:37:11.978 NA Illumina MiSeq Academia Sinica 193.0x 87.26 100 0.52 100 3.64 GCF_005221325.1 5762 5895 5895 63 12 57 1 Agrobacterium_tumefaciens_homd_HMT_485 GCA_005221345.1 HMT-485 CFBP5877 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-485 Agrobacterium tumefaciens CFBP5877 6 5996243 59.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/221/345/GCA_005221345.1_ASM522134v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium;s__Agrobacterium sp900012625 PRJNA534393 358 SAMN11489453 ASM522134v1 Complete Genome Velvet v. 1.2.10 2019-04-24T03:37:12.044 NA Illumina MiSeq Academia Sinica 291.0x 87.26 99.98 0.52 100 4.36 GCF_005221345.1 5555 5685 5685 61 12 56 1 Agrobacterium_tumefaciens_homd_HMT_485 GCA_005233655.1 HMT-565 CFBP13530 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-565 Enterobacter cancerogenus CFBP13530 37 4901530 55.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/233/655/GCA_005233655.1_ASM523365v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter cancerogenus PRJNA459499 69218 SAMN09064920 ASM523365v1 Contig Velvet v. 1.2.10; SOAPdenovo v. 2.04 2018-05-04T04:52:12.590 France Seed Illumina HiSeq INRA 200.0x 98.96 100 0.1 100 0.06 GCF_005233655.1 QGAL01 4563 4810 4810 164 6 76 1 Enterobacter_cancerogenus_homd_HMT_565 GCA_005403165.1 HMT-421 PAGU 1578 Named Cultivated Oral (Abundance: Medium) HMT-421 Veillonella tobetsuensis PAGU 1578 133 2098634 38.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/403/165/GCA_005403165.1_ASM540316v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella tobetsuensis PRJDB8051 1110546 SAMD00163388 ASM540316v1 Scaffold CLC genomics workbench v. 11.0.1 2019-03-25T15:05:38.577 Japan Illumina Department of Infectious Diseases, National Center for Global Health and Medicine 222.0x 97.4 100 1.5 100 0.19 GCF_005403165.1 BJCQ01 1883 1956 1956 19 4 49 1 Veillonella_tobetsuensis_homd_HMT_421 GCA_005403265.1 HMT-421 PAGU 1579 Named Cultivated Oral (Abundance: Medium) HMT-421 Veillonella tobetsuensis PAGU 1579 129 2151918 38.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/403/265/GCA_005403265.1_ASM540326v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella tobetsuensis PRJDB8051 1110546 SAMD00163389 ASM540326v1 Scaffold CLC genomics workbench v. 11.0.1 2019-03-25T15:05:38.593 Japan Illumina Department of Infectious Diseases, National Center for Global Health and Medicine 171.0x 97.52 100 0.6 100 0.18 GCF_005403265.1 BJCR01 1900 1959 1959 20 3 35 1 Veillonella_tobetsuensis_homd_HMT_421 GCA_005502385.1 HMT-127 L2B Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis L2B 28 2174619 31.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/502/385/GCA_005502385.1_ASM550238v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA414404 2502249 SAMN08712316 ASM550238v1 Contig SPAdes v. 3.8 2018-03-14T12:09:07.497 Italy: Trento alpine spring water Illumina MiSeq University of Trento 30.0x 99.1 0.58 99.98 0.08 GCF_005502385.1 SCOV01 2141 2249 2249 53 5 49 1 Staphylococcus_hominis_homd_HMT_127 GCA_005502985.1 HMT-116 U Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis U 20 2378956 32.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/502/985/GCA_005502985.1_ASM550298v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA414404 2502253 SAMN08712320 ASM550298v1 Contig SPAdes v. 3.8 2018-03-14T12:09:07.560 Italy: Trento alpine spring water Illumina MiSeq University of Trento 30.0x 99.81 0.06 99.99 0.17 GCF_005502985.1 SCOZ01 2318 2439 2439 54 8 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_005503465.1 HMT-185 4NA327F11 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-185 Microbacterium ginsengisoli 4NA327F11 57 2979209 70.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/503/465/GCA_005503465.1_ASM550346v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium ginsengisoli PRJNA414404 2502229 SAMN08712296 ASM550346v1 Contig SPAdes v. 3.8 2018-03-14T12:09:07.123 Italy: Trento alpine spring water Illumina MiSeq University of Trento 30.0x 98.99 0 99.99 0.08 GCF_005503465.1 SCOB01 2853 2942 2942 8 3 76 2 Microbacterium_ginsengisoli_homd_HMT_185 GCA_005503595.1 HMT-565 2VL Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-565 Enterobacter cancerogenus 2VL 22 4590525 55.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/503/595/GCA_005503595.1_ASM550359v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter cancerogenus PRJNA414404 2502206 SAMN08712273 ASM550359v1 Contig SPAdes v. 3.8 2018-03-14T12:09:06.757 Italy: Trento alpine spring water Illumina MiSeq University of Trento 30.0x 100 0.19 100 0.01 GCF_005503595.1 SCNE01 4188 4382 4382 110 7 76 1 Enterobacter_cancerogenus_homd_HMT_565 GCA_005519305.1 HMT-010 DD78 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-010 Acinetobacter radioresistens DD78 4 3247241 41.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/519/305/GCA_005519305.1_ASM551930v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens PRJNA528312 40216 SAMN11179230 ASM551930v1 Complete Genome HGAP v. 3.0 2019-03-20T17:02:03.426 Chile: Valparaiso Region soil PacBio RSII Universidad Tecnica Federico Santa Maria 246.0x 98.95 100 0 100 0.12 GCF_005519305.1 2988 3102 3102 15 21 77 1 Acinetobacter_radioresistens_homd_HMT_010 GCA_005670605.1 HMT-692 DSM 44074 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-692 Mycolicibacterium neoaurum DSM 44074 27 5477923 66.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/670/605/GCA_005670605.1_ASM567060v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium neoaurum PRJNA429429 1795 SAMN08339099 ASM567060v1 Scaffold A5-assembly pipeline v. 140604 2018-01-10T10:56:13.196 missing soil Illumina-Hiseq 2000 Uppsala University 176.0x 99.99 100 1.25 100 0 GCF_005670605.1 POTO01 5200 5276 5276 24 3 48 1 Mycolicibacterium_neoaurum_homd_HMT_692 GCA_005696555.1 HMT-171 F0337 Named Cultivated Oral (Abundance: High) HMT-171 Actinomyces oris clade-171 F0337 1 3097489 68.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/696/555/GCA_005696555.1_ASM569655v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_E PRJNA282954 706439 SAMN11483330 ASM569655v1 Complete Genome HGAP v. 3 2019-04-23T14:32:06.066 USA: Blacksberg, Virginia human oral cavity D057 PacBio RS II The Forsyth Institute 225.0x 100 0.95 99.98 0.84 GCF_005696555.1 2566 2640 2640 12 9 52 1 Actinomyces_oris_clade_171_homd_HMT_171 GCA_005696555.1 HMT-171 F0337 Named Cultivated Oral (Abundance: High) HMT-171 Actinomyces oris clade-171 F0337 1 3097489 68.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/696/555/GCA_005696555.1_ASM569655v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_E PRJNA282954 706439 SAMN11483330 ASM569655v1 Complete Genome HGAP v. 3 2019-04-23T14:32:06.066 USA: Blacksberg, Virginia human oral cavity D057 PacBio RS II The Forsyth Institute 225.0x 100 0.95 99.98 0.84 GCF_005696555.1 2566 2640 2640 12 9 52 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_005696695.1 HMT-701 XH001 Named Cultivated Oral (Abundance: High) HMT-701 Schaalia odontolytica XH001 1 2360133 65.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/696/695/GCA_005696695.1_ASM569669v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia odontolytica_C PRJNA241438 1660 SAMN11483329 ASM569669v1 Complete Genome HGAP v. 3 2019-04-23T14:32:06.046 USA: Los Angeles, California human oral cavity UCLA1 PacBio RS II The Forsyth Institute 371.0x 87.49 100 0.47 100 0.13 GCF_005696695.1 1994 2062 2062 9 9 49 1 Schaalia_odontolytica_homd_HMT_701 GCA_005696855.1 HMT-739 F0700 Named Cultivated Oral (Abundance: Medium) HMT-739 Arachnia propionica F0700 1 3437242 66.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/696/855/GCA_005696855.1_ASM569685v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia propionica PRJNA282954 1750 SAMN11483328 ASM569685v1 Complete Genome HGAP v. 3 2019-04-23T14:32:06.026 USA: Blacksberg, Virginia human oral cavity D115 PacBio RS II The Forsyth Institute 129.0x 98.99 97.47 1.22 100 0.11 GCF_005696855.1 3047 3127 3127 21 6 52 1 Arachnia_propionica_homd_HMT_739 GCA_005697055.1 HMT-955 PM004 Unnamed Cultivated in coculture Oral (Abundance: Scarce) HMT-955 Saccharimonas sicarius PM004 1 842202 46.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/697/055/GCA_005697055.1_ASM569705v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp010202265 PRJNA282954 2572087 SAMN11483327 ASM569705v1 Complete Genome HGAP v. 3 2019-04-23T14:32:06.010 USA: Cambridge, Massachusetts human oral cavity UC16 PacBio RS II The Forsyth Institute 917.0x 64.35 3.7 99.24 0.74 GCF_005697055.1 837 890 890 5 3 45 0 Saccharimonas_sicarius_homd_HMT_955 GCA_005697215.1 HMT-488 AC001 Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur AC001 1 889964 50.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/697/215/GCA_005697215.1_ASM569721v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp005697215 PRJNA282954 713059 SAMN11483318 ASM569721v1 Complete Genome HGAP v. 4 2019-04-23T14:32:05.840 USA: Cambridge, Massachusetts human oral cavity UC19 PacBio Sequel The Forsyth Institute 729.0x 62.82 0.85 99.39 0.13 GCF_005697215.1 913 967 967 6 3 45 0 Nanosynbacter_fur_homd_HMT_488 GCA_005697395.1 HMT-952 TM7x Unnamed Cultivated Oral (Abundance: Medium) HMT-952 Nanosynbacter lyticus TM7x 1 705178 44.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/697/395/GCA_005697395.1_ASM569739v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter lyticus PRJNA241438 2572089 SAMN11483332 ASM569739v1 Complete Genome HGAP v. 4 2019-04-23T14:32:07.546 USA: Los Angeles, California human oral cavity UCLA1 PacBio Sequel The Forsyth Institute 776.0x 65.38 0 99.94 0.37 GCF_005697395.1 717 767 767 4 3 43 0 Nanosynbacter_lyticus_homd_HMT_952 GCA_005697565.1 HMT-957 BB001 Unnamed Cultivated Oral (Abundance: Medium) HMT-957 Nanosynbacter featherlites BB001 1 782344 47.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/697/565/GCA_005697565.1_ASM569756v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter featherlites_A PRJNA282954 2572088 SAMN11483331 ASM569756v1 Complete Genome HGAP v. 4 2019-04-23T14:32:07.526 USA: Los Angeles, California human oral cavity UCLA2 PacBio Sequel The Forsyth Institute 620.0x 64.96 0 98.94 0.17 GCF_005697565.1 776 827 827 4 3 44 0 GCA_005706435.1 HMT-120 PK-01 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus PK-01 1 2615683 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/706/435/GCA_005706435.1_ASM570643v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA517594 1283 SAMN10838965 ASM570643v1 Complete Genome SPAdes v. 3.9 2019-01-29T06:55:05.356 Pakistan: Lahore missing Illumina National University of Sciences and Technology 30.0x 99.18 99.62 0.07 100 0.21 GCF_005706435.1 2586 2761 2761 99 10 65 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_005773845.1 HMT-530 T45-374 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T45-374 5 2483928 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/773/845/GCA_005773845.1_ASM577384v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605678 ASM577384v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.523 USA Tissue Right Shoulder HUMERAL MEMBRANE Illumina MiSeq University of Washington 36.0x 99.96 100 0 99.99 0.01 GCF_005773845.1 VBXW01 2307 2380 2380 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_005773885.1 HMT-530 T45-496 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T45-496 5 2484120 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/773/885/GCA_005773885.1_ASM577388v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605680 ASM577388v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.556 USA Tissue Right Shoulder HUMERAL MEMBRANE Illumina MiSeq University of Washington 189.5x 99.96 100 0 99.98 0.01 GCF_005773885.1 VBXV01 2308 2381 2381 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_005773905.1 HMT-530 T29350 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T29350 6 2479249 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/773/905/GCA_005773905.1_ASM577390v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605677 ASM577390v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.510 USA Wound Right Shoulder STEM EXPLANT Illumina MiSeq University of Washington 56.6x 99.71 100 0 99.99 0.07 GCF_005773905.1 VBXX01 2306 2379 2379 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_005773925.1 HMT-530 T28840 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T28840 6 2483688 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/773/925/GCA_005773925.1_ASM577392v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605675 ASM577392v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.476 USA HUMERAL HEAD EXPLANT Illumina MiSeq University of Washington 32.3x 99.96 100 0 99.98 0.01 GCF_005773925.1 VBXZ01 2299 2372 2372 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_005773965.1 HMT-530 T28-811 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T28-811 4 2484004 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/773/965/GCA_005773965.1_ASM577396v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605674 ASM577396v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.460 USA GLENOID EXPLANT Illumina MiSeq University of Washington 36.1x 99.96 100 0 99.97 0.01 GCF_005773965.1 VBYA01 2308 2381 2381 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_005774105.1 HMT-530 P15-207 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-207 6 2465382 60.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/774/105/GCA_005774105.1_ASM577410v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605667 ASM577410v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.343 USA Wound Right Shoulder HUMERAL STEM EXPLANT Illumina MiSeq University of Washington 101.3x 98.79 100 0 100 0.16 GCF_005774105.1 VBYH01 2273 2346 2346 22 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_005774145.1 HMT-530 P15-186 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-186 5 2479017 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/774/145/GCA_005774145.1_ASM577414v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605665 ASM577414v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.290 USA Wound HUMERAL STEM EXPLANT Illumina MiSeq University of Washington 104.1x 99.96 99.43 0.03 100 0.11 GCF_005774145.1 VBYJ01 2297 2371 2371 23 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_005774205.1 HMT-530 P15-178 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-178 5 2536546 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/774/205/GCA_005774205.1_ASM577420v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605662 ASM577420v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.243 USA Tissue Right Shoulder GLENOID MEMBRANE Illumina MiSeq University of Washington 79.6x 99.55 100 0 100 0.3 GCF_005774205.1 VBYM01 2340 2416 2416 24 3 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_005774245.1 HMT-530 P15-165 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-165 5 2535403 60.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/774/245/GCA_005774245.1_ASM577424v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605660 ASM577424v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.210 USA Wound Right Shoulder HUMERAL EXPLANT Illumina MiSeq University of Washington 103.9x 99.55 100 0 100 0.27 GCF_005774245.1 VBYO01 2343 2419 2419 24 3 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_005774405.1 HMT-530 P15-077 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-077 5 2478893 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/774/405/GCA_005774405.1_ASM577440v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605652 ASM577440v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.056 USA Wound Right Shoulder OPERATIVE Illumina MiSeq University of Washington 70.1x 99.95 98.94 0.03 100 0.11 GCF_005774405.1 VBYW01 2296 2370 2370 23 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_005774425.1 HMT-530 P15-021 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-021 5 2477459 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/774/425/GCA_005774425.1_ASM577442v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605650 ASM577442v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:05.020 USA Tissue Right Shoulder SUTURE Illumina MiSeq University of Washington 52.3x 99.96 99.43 0.03 100 0.12 GCF_005774425.1 VBYY01 2297 2372 2372 23 4 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_005774435.1 HMT-530 P15-014 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes P15-014 5 2546045 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/774/435/GCA_005774435.1_ASM577443v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA541974 1747 SAMN11605649 ASM577443v1 Contig Geneious De Novo Assembly v. 9.1.8 2019-05-08T16:59:04.996 USA Tissue Right Shoulder COLLAR MEMBRANE Illumina MiSeq University of Washington 58.6x 99.17 100 0 99.99 0.12 GCF_005774435.1 VBYZ01 2353 2428 2428 23 3 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_005796055.1 HMT-552 P313 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum P313 48 2630617 63.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/796/055/GCA_005796055.1_ASM579605v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA524452 33010 SAMN11026534 ASM579605v1 Scaffold abyss de novo v. 1.9.0 2019-02-27T04:14:03.863 Switzerland infant stool Illumina HiSeq ETH Zurich 50.0x 98.74 100 0 100 0.15 GCF_005796055.1 VBRS01 2369 2449 2449 23 9 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_005844225.1 HMT-966 BSD2780061688st1_A10 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-966 Alistipes shahii BSD2780061688st1_A10 24 3239091 58.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/844/225/GCA_005844225.1_ASM584422v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii PRJNA518912 328814 SAMN10863270 ASM584422v1 Scaffold SPAdes v. 3.10.1 2019-02-01T16:08:05.026 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 57.5x 99.04 100 0.48 99.99 1.03 GCF_005844225.1 SPHG01 2734 2807 2807 18 3 51 1 Alistipes_shahii_homd_HMT_966 GCA_005862145.1 HMT-962 KGMB03662 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-962 Hominimerdicola aceti KGMB03662 7 2707502 43.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/862/145/GCA_005862145.1_ASM586214v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola;s__Hominimerdicola aceti PRJNA543941 2583230 SAMN11791796 ASM586214v1 Contig HGAP v. 4 2019-05-21T00:46:03.800 South Korea: Joengeup feces PacBio Sequel Korea Research Institute of Bioscience and Biotechnology 376.0x 97.95 0 99.9 3.41 GCF_005862145.1 VCGV01 2453 2542 2542 21 14 53 1 Hominimerdicola_aceti_homd_HMT_962 GCA_005864225.1 HMT-418 FAM 1079 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-418 Lentilactobacillus parafarraginis FAM 1079 89 2963205 45.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/864/225/GCA_005864225.1_ASM586422v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus parafarraginis PRJNA543085 390842 SAMN11653943 ASM586422v1 Scaffold SPAdes v. 3.6.1 2019-05-15T11:59:04.896 Switzerland missing Illumina Agroscope 30.0x 99.77 98.78 0.62 99.93 2.61 GCF_005864225.1 VBSX01 2810 2927 2927 50 7 59 1 Lentilactobacillus_parafarraginis_homd_HMT_418 GCA_005885795.1 HMT-805 X-4 Named Cultivated Pathogen (Abundance: Scarce) HMT-805 Treponema pallidum X-4 1 1139838 52.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/885/795/GCA_005885795.1_ASM588579v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema pallidum PRJNA544173 161 SAMN11812273 ASM588579v1 Complete Genome SOAPdenovo v. unspecified 2019-05-22T05:30:03.746 China: Xiamen missing Illumina HiSeq Zhongshan Hospital, Medical College of Xiamen University, Xiamen, China 4201.0x 99.93 100 0 99.18 0.01 GCF_005885795.1 978 1032 1032 2 6 45 1 Treponema_pallidum_homd_HMT_805 GCA_005886145.1 HMT-014 F0314 Named Cultivated Oral (Abundance: Medium) HMT-014 Neisseria oralis F0314 1 2502158 52.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/886/145/GCA_005886145.1_ASM588614v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria oralis PRJNA543187 641149 SAMN02463843 ASM588614v1 Chromosome Morphoseq v. 1 2013-12-18T11:11:45.620 not determined missing Morphoseq University of Technology Sydney 30.0x 99.46 0.34 100 0.02 GCF_005886145.1 2295 2474 2474 103 12 63 1 Neisseria_oralis_homd_HMT_014 GCA_005886335.1 HMT-848 F0332 Named Cultivated Oral (Abundance: Medium) HMT-848 Peptidiphaga gingivicola F0332 1 2526493 64.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/886/335/GCA_005886335.1_ASM588633v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Peptidiphaga;s__Peptidiphaga gingivicola PRJNA543187 649743 SAMN00008757 ASM588633v1 Complete Genome Morphoseq v. 1 2010-02-19T16:12:06.487 not determined missing Morphoseq University of Technology Sydney 30.0x 99.17 0.83 99.93 0.13 GCF_005886335.1 2094 2157 2157 5 9 48 1 Peptidiphaga_gingivicola_homd_HMT_848 GCA_005886435.1 HMT-850 F0333 Named Cultivated Oral (Abundance: Scarce) HMT-850 Schaalia cardiffensis F0333 1 2230588 61.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/886/435/GCA_005886435.1_ASM588643v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia cardiffensis PRJNA543187 888050 SAMN00260255 ASM588643v1 Complete Genome Morphoseq v. 1 2011-04-26T16:25:23.603 United Kingdom oral Morphoseq University of Technology Sydney 30.0x 96.93 99.05 2.01 99.91 0.16 GCF_005886435.1 1834 1908 1908 12 11 50 1 Schaalia_cardiffensis_homd_HMT_850 GCA_005888175.1 HMT-535 F3030 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius F3030 67 1962639 38.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/888/175/GCA_005888175.1_ASM588817v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA297156 725 SAMN04115931 ASM588817v1 Contig Velvet v. 1.2.03 2015-09-28T09:21:10.017 Brazil: Sao Paulo, Serrana Blood from a Brazilian Purpuric Fever case Illumina HiSeq Institute of Biology - University of Campinas 200.0x 96.96 99.45 0 100 0.7 GCF_005888175.1 LNKQ01 1958 2053 2053 41 4 49 1 Haemophilus_aegyptius_homd_HMT_535 GCA_005888185.1 HMT-535 F3283 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius F3283 130 1962133 38.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/888/185/GCA_005888185.1_ASM588818v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA297161 725 SAMN04115935 ASM588818v1 Contig Velvet v. 1.2.03 2015-09-28T09:35:09.007 Brazil: Sao Paulo, Presidente Blood from a Brazilian Purpuric Fever case Illumina HiSeq Institute of Biology - University of Campinas 200.0x 96.95 99.45 0.48 99.99 0.59 GCF_005888185.1 LNKP01 1945 2040 2040 41 4 49 1 Haemophilus_aegyptius_homd_HMT_535 GCA_005888195.1 HMT-535 KC1018 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius KC1018 96 1909282 38.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/888/195/GCA_005888195.1_ASM588819v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_I PRJNA297162 725 SAMN04115936 ASM588819v1 Contig Velvet v. 1.2.03 2015-09-28T09:38:14.373 USA Conjunctivitis case Illumina HiSeq Institute of Biology - University of Campinas 200.0x 97.02 99.56 0.22 99.99 0.08 GCF_005888195.1 LNKR01 1894 1988 1988 43 3 47 1 Haemophilus_aegyptius_homd_HMT_535 GCA_005888205.1 HMT-535 F3039 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius F3039 138 1961979 38.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/888/205/GCA_005888205.1_ASM588820v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA297158 725 SAMN04115932 ASM588820v1 Contig Velvet v. 1.2.03 2015-09-28T09:27:12.760 Brazil: Sao Paulo, Serrana Blood from a Brazilian Purpuric Fever case Illumina HiSeq Institute of Biology - University of Campinas 200.0x 96.95 99.12 1.09 99.98 1.26 GCF_005888205.1 LNKN01 1942 2036 2036 41 3 49 1 Haemophilus_aegyptius_homd_HMT_535 GCA_005888215.1 HMT-535 F3042 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius F3042 137 1969657 38.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/888/215/GCA_005888215.1_ASM588821v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA297159 725 SAMN04115934 ASM588821v1 Contig Velvet v. 1.2.03 2015-09-28T09:30:10.380 Brazil: Sao Paulo, Serrana Oropharynx from a Brazilian Purpuric Fever case Illumina HiSeq Institute of Biology - University of Campinas 200.0x 96.95 99.23 0.89 100 3.68 GCF_005888215.1 LNKO01 1955 2050 2050 41 4 49 1 Haemophilus_aegyptius_homd_HMT_535 GCA_005888265.1 HMT-535 F1946 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius F1946 74 1957726 38.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/888/265/GCA_005888265.1_ASM588826v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA297155 725 SAMN04115930 ASM588826v1 Contig Velvet v. 1.2.03 2015-09-28T09:16:17.033 Brazil: Sao Paulo, Promissao Skin lesion from a Brazilian Purpuric Fever case Illumina HiSeq Institute of Biology - University of Campinas 200.0x 96.95 99.23 0 99.99 0.41 GCF_005888265.1 LNKS01 1946 2037 2037 40 3 47 1 Haemophilus_aegyptius_homd_HMT_535 GCA_005890235.1 HMT-425 BHN913 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN913 116 2202040 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/235/GCA_005890235.1_ASM589023v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166150 ASM589023v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:04.073 Germany NPS Illumina MiSeq Karolinska Institutet 100.0x 98.61 99.76 0.4 99.99 0.11 GCF_005890235.1 SOQI01 2154 2285 2285 73 5 52 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890245.1 HMT-425 BHN916 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN916 125 2259794 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/245/GCA_005890245.1_ASM589024v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166153 ASM589024v1 Scaffold SPAdes v. 3.1.1 2019-03-19T10:38:04.123 Belgium sputum Illumina MiSeq Karolinska Institutet 100.0x 97.18 99.82 0.35 100 0.17 GCF_005890245.1 SOQF01 2208 2331 2331 68 5 49 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890255.1 HMT-425 BHN914 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN914 117 2226387 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/255/GCA_005890255.1_ASM589025v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166151 ASM589025v1 Scaffold SPAdes v. 3.1.1 2019-03-19T10:38:04.090 Netherlands NPS Illumina MiSeq Karolinska Institutet 100.0x 96.31 99.82 1.05 99.99 0.09 GCF_005890255.1 SOQH01 2123 2243 2243 68 5 46 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890265.1 HMT-425 BHN915 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN915 90 2235280 39.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/265/GCA_005890265.1_ASM589026v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166152 ASM589026v1 Scaffold SPAdes v. 3.1.1 2019-03-19T10:38:04.107 Slovenia NPS Illumina MiSeq Karolinska Institutet 100.0x 97.3 99.82 0.2 99.99 0.12 GCF_005890265.1 SOQG01 2178 2298 2298 67 5 47 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890285.1 HMT-425 BHN919 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN919 98 2199514 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/285/GCA_005890285.1_ASM589028v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166155 ASM589028v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:04.153 Belgium NPS Illumina MiSeq Karolinska Institutet 100.0x 98.64 99.62 0.2 99.98 0.15 GCF_005890285.1 SOQD01 2172 2293 2293 71 5 44 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890345.1 HMT-425 BHN892 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN892 86 2227985 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/345/GCA_005890345.1_ASM589034v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166147 ASM589034v1 Scaffold SPAdes v. 3.1.1 2019-03-19T10:38:04.023 Belgium NPS Illumina MiSeq Karolinska Institutet 100.0x 97.19 99.82 0.2 100 0.13 GCF_005890345.1 SOQL01 2180 2297 2297 66 5 45 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890355.1 HMT-425 BHN886 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN886 87 2239213 39.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/355/GCA_005890355.1_ASM589035v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166144 ASM589035v1 Scaffold SPAdes v. 3.1.1 2019-03-19T10:38:03.973 Belgium NPS Illumina MiSeq Karolinska Institutet 100.0x 97.3 99.82 0.2 99.99 0.22 GCF_005890355.1 SOQO01 2208 2331 2331 69 5 48 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890375.1 HMT-425 BHN885 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN885 111 2226571 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/375/GCA_005890375.1_ASM589037v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166143 ASM589037v1 Scaffold SPAdes v. 3.1.1 2019-03-19T10:38:03.957 Poland NPS Illumina MiSeq Karolinska Institutet 100.0x 98.85 99.82 0.38 99.99 0.12 GCF_005890375.1 SOQP01 2191 2317 2317 75 6 44 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890385.1 HMT-425 BHN880 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN880 102 2266949 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/385/GCA_005890385.1_ASM589038v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166141 ASM589038v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:03.920 United Kingdom NPS Illumina MiSeq Karolinska Institutet 100.0x 97.22 99.74 0.2 99.99 0.26 GCF_005890385.1 SOQR01 2255 2381 2381 72 6 47 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890435.1 HMT-425 BHN871 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN871 95 2207179 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/435/GCA_005890435.1_ASM589043v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166139 ASM589043v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:03.887 Belgium NPS Illumina MiSeq Karolinska Institutet 100.0x 96.97 99.62 0.2 99.99 0.13 GCF_005890435.1 SOQT01 2166 2289 2289 68 6 48 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890445.1 HMT-425 BHN868 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN868 138 2224110 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/445/GCA_005890445.1_ASM589044v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166138 ASM589044v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:03.870 Belgium NPS Illumina MiSeq Karolinska Institutet 100.0x 97.12 99.62 0.2 100 0.13 GCF_005890445.1 SOQU01 2163 2281 2281 64 5 48 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890465.1 HMT-425 BHN918 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN918 124 2235877 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/465/GCA_005890465.1_ASM589046v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166154 ASM589046v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:04.137 Belgium sputum Illumina MiSeq Karolinska Institutet 100.0x 97.38 99.14 0.2 100 0.27 GCF_005890465.1 SOQE01 2190 2315 2315 72 5 47 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890475.1 HMT-425 BHN920 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN920 98 2229217 39.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/475/GCA_005890475.1_ASM589047v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166156 ASM589047v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:04.170 Netherlands NPS Illumina MiSeq Karolinska Institutet 100.0x 97.38 99.62 0.2 99.99 0.23 GCF_005890475.1 SOQC01 2163 2284 2284 68 5 47 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890485.1 HMT-425 BHN922 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN922 186 2209430 39.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/485/GCA_005890485.1_ASM589048v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166157 ASM589048v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:04.187 Belgium NPS Illumina MiSeq Karolinska Institutet 100.0x 97.11 98.1 0.34 99.9 0.47 GCF_005890485.1 SOQB01 2186 2296 2296 64 5 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890525.1 HMT-425 BHN912 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN912 174 2231296 39.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/525/GCA_005890525.1_ASM589052v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166149 ASM589052v1 Scaffold SPAdes v. 3.1.1 2019-03-19T10:38:04.057 Netherlands NPS Illumina MiSeq Karolinska Institutet 100.0x 97.3 99.82 0.2 99.99 0.05 GCF_005890525.1 SOQJ01 2173 2292 2292 66 6 46 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890545.1 HMT-425 BHN893 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN893 91 2237789 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/545/GCA_005890545.1_ASM589054v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166148 ASM589054v1 Scaffold SPAdes v. 3.1.1 2019-03-19T10:38:04.040 United Kingdom NPS Illumina MiSeq Karolinska Institutet 100.0x 97.31 99.82 0.2 100 0.2 GCF_005890545.1 SOQK01 2206 2330 2330 70 6 47 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890555.1 HMT-425 BHN891 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN891 94 2243766 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/555/GCA_005890555.1_ASM589055v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166146 ASM589055v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:04.007 Belgium NPS Illumina MiSeq Karolinska Institutet 100.0x 97.25 99.82 0.2 99.99 0.18 GCF_005890555.1 SOQM01 2200 2323 2323 71 5 46 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890575.1 HMT-425 BHN881 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN881 132 2233013 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/575/GCA_005890575.1_ASM589057v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166142 ASM589057v1 Scaffold SPAdes v. 3.1.1 2019-03-19T10:38:03.937 Spain NPS Illumina MiSeq Karolinska Institutet 100.0x 97.26 99.78 0.28 99.98 0.11 GCF_005890575.1 SOQQ01 2199 2319 2319 67 5 47 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890605.1 HMT-425 BHN877 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN877 104 2268655 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/605/GCA_005890605.1_ASM589060v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166140 ASM589060v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:03.903 Spain sputum Illumina MiSeq Karolinska Institutet 100.0x 97.64 99.62 0.2 99.99 0.12 GCF_005890605.1 SOQS01 2222 2344 2344 71 5 45 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005890625.1 HMT-425 BHN879 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae BHN879 113 2215472 39.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/625/GCA_005890625.1_ASM589062v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA528011 257758 SAMN11166137 ASM589062v1 Contig SPAdes v. 3.1.1 2019-03-19T10:38:03.843 United Kingdom NPS Illumina MiSeq Karolinska Institutet 100.0x 97.24 99.22 0.2 99.99 0.17 GCF_005890625.1 SOQV01 2138 2258 2258 66 6 47 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_005937155.1 HMT-530 T45496 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T45496 5 2484758 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/155/GCA_005937155.1_ASM593715v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289918 ASM593715v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:19.170 USA Tissue Shoulder Right HUMERAL MEMBRANE No. 1 Illumina MiSeq University of Washington 43.0x 99.96 100 0 99.99 0.01 GCF_005937155.1 QJHQ01 2310 2383 2383 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_005937245.1 HMT-530 T19558 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T19558 5 2484307 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/245/GCA_005937245.1_ASM593724v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289910 ASM593724v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:19.047 USA Humeral stem explant Illumina MiSeq University of Washington 85.0x 99.96 100 0 99.99 0.01 GCF_005937245.1 QJHY01 2307 2382 2382 23 5 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_005937265.1 HMT-530 T28811 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T28811 4 2484004 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/265/GCA_005937265.1_ASM593726v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289913 ASM593726v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:19.093 USA Glenoid explant Illumina MiSeq University of Washington 39.0x 99.96 100 0 99.97 0.01 GCF_005937265.1 QJHV01 2308 2381 2381 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_005937345.1 HMT-530 T45801 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T45801 6 2465584 60.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/345/GCA_005937345.1_ASM593734v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289903 ASM593734v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:18.933 USA Wound Right Shoulder HUMERAL HEAD EXPLANT Illumina MiSeq University of Washington 110.0x 98.77 100 0 100 0.16 GCF_005937345.1 QJIF01 2268 2341 2341 22 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_005937375.1 HMT-530 T16975 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T16975 5 2536713 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/375/GCA_005937375.1_ASM593737v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289898 ASM593737v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:18.853 USA Tissue Right Shoulder GLENOID MEMBRANE No. 2 Illumina MiSeq University of Washington 79.0x 99.55 100 0 100 0.3 GCF_005937375.1 QJIK01 2342 2418 2418 24 3 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_005937385.1 HMT-530 T45864 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T45864 6 2495791 60.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/385/GCA_005937385.1_ASM593738v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289904 ASM593738v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:18.947 USA Tissue Shoulder Right GLENOID No. 2 Illumina MiSeq University of Washington 13.0x 98.76 100 0 99.99 0.17 GCF_005937385.1 QJIE01 2323 2394 2394 22 3 44 2 Cutibacterium_acnes_homd_HMT_530 GCA_005937555.1 HMT-530 T45374 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T45374 5 2483928 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/555/GCA_005937555.1_ASM593755v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289917 ASM593755v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:19.153 USA Tissue Right Shoulder HUMERAL MEMBRANE No. 3 Illumina MiSeq University of Washington 37.0x 99.96 100 0 99.99 0.01 GCF_005937555.1 QJHR01 2307 2380 2380 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_005937615.1 HMT-530 T28840 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T28840 6 2483851 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/615/GCA_005937615.1_ASM593761v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289914 ASM593761v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:19.110 USA Humeral head explant Illumina MiSeq University of Washington 37.0x 99.96 100 0 99.99 0.01 GCF_005937615.1 QJHU01 2307 2380 2380 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_005937655.1 HMT-552 T19584 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum T19584 15 2667416 63.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/655/GCA_005937655.1_ASM593765v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA474022 33010 SAMN09289908 ASM593765v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:19.007 USA Wound No. 1 Right PRESKIN Illumina MiSeq University of Washington 45.0x 96.46 100 0 99.99 0.13 GCF_005937655.1 QJIA01 2375 2456 2456 28 4 48 1 Cutibacterium_avidum_homd_HMT_552 GCA_005937695.1 HMT-530 T70038 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T70038 5 2479017 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/695/GCA_005937695.1_ASM593769v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289901 ASM593769v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:18.900 USA Wound HUMERAL STEM EXPLANT Illumina MiSeq University of Washington 100.0x 99.96 99.43 0.03 100 0.11 GCF_005937695.1 QJIH01 2297 2371 2371 23 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_006088775.1 HMT-811 SCDR 1 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-811 Arcanobacterium haemolyticum SCDR 1 1 1986154 55.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/088/775/GCA_006088775.1_ASM608877v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Arcanobacterium;s__Arcanobacterium haemolyticum PRJNA497988 28264 SAMN10275032 ASM608877v1 Chromosome GS De Novo Assembler v. 4 2018-10-23T07:10:06.013 Saudi Arabia: Malaz area, Riya missing IonTorrent King Saud University 300.0x 99.61 97.99 0 99.99 0.09 GCF_006088775.1 1774 1846 1846 8 12 51 1 Arcanobacterium_haemolyticum_homd_HMT_811 GCA_006094315.1 HMT-571 ATCC 25416 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-571 Burkholderia cepacia ATCC 25416 5 8574389 66.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/094/315/GCA_006094315.1_ASM609431v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia cepacia PRJNA509990 983594 SAMN10591700 ASM609431v1 Complete Genome Unicycler v. Unicycler v0.4.5 2018-12-14T01:53:07.080 missing Oxford Nanopore GridION Zhejiang Tianke High Technology Development Co.Ltd. 79.0x 99.99 100 0.2 100 0.08 GCF_006094315.1 7735 7895 7895 60 18 81 1 Burkholderia_cepacia_homd_HMT_571 GCA_006094375.1 HMT-601 ATCC 14990 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis ATCC 14990 3 2491058 32.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/094/375/GCA_006094375.1_ASM609437v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA515334 1282 SAMN10738425 ASM609437v1 Complete Genome Unicycler v. v0.4.5 2019-01-14T00:54:02.770 missing Oxford Nanopore GridION Zhejiang Tianke High Technology Development Co.Ltd. 240.0x 99.99 99.81 0 99.99 0.05 GCF_006094375.1 2259 2423 2423 84 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_006094395.1 HMT-120 ATCC 29970 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus ATCC 29970 3 2572027 32.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/094/395/GCA_006094395.1_ASM609439v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA515391 1283 SAMN10754498 ASM609439v1 Complete Genome Unicycler v. v0.4.5 2019-01-16T02:28:03.470 missing Oxford Nanopore GridION; Illumina HiSeq Zhejiang Tianke High Technology Development Co.Ltd. 260.0x 99.98 99.39 0 99.99 0.05 GCF_006094395.1 2418 2501 0 0 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_006094415.1 HMT-087 ATCC 4698 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-087 Micrococcus luteus ATCC 4698 1 2560556 73.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/094/415/GCA_006094415.1_ASM609441v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus;s__Micrococcus luteus PRJNA515542 1270 SAMN10761220 ASM609441v1 Complete Genome Unicycler v. v0.4.5 2019-01-16T21:09:04.017 missing Oxford Nanopore GridION; Illumina HiSeq Zhejiang Tianke High Technology Development Co.Ltd. 300.0x 99.94 97.25 2.43 99.86 1.98 GCF_006094415.1 2403 2481 2481 12 6 59 1 Micrococcus_luteus_homd_HMT_087 GCA_006094915.1 HMT-550 ATCC 12600 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus ATCC 12600 2 2782561 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/094/915/GCA_006094915.1_ASM609491v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA514950 1280 SAMN10739543 ASM609491v1 Complete Genome Unicycler v. Unicycler v0.4.5 2019-01-14T02:36:03.683 missing Oxford Nanopore GridION Zhejiang Tianke High Technology Development Co.Ltd. 227.0x 99.99 99.51 0.08 100 0.11 GCF_006094915.1 2529 2723 2723 112 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_006149185.1 HMT-973 CavFT-hAR46 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-973 Parabacteroides distasonis CavFT-hAR46 1 4952323 45.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/149/185/GCA_006149185.1_ASM614918v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis PRJNA542869 823 SAMN11642307 ASM614918v1 Complete Genome HGAP v. FEB-2018 2019-05-14T13:58:06.543 USA: Cleveland intramural gut wall PacBio RSII Case Western Reserve University School of Medicine 168.0x 98.77 99.42 0 99.99 1.16 GCF_006149185.1 4125 4254 4254 27 21 80 1 Parabacteroides_distasonis_homd_HMT_973 GCA_006175905.1 HMT-707 ATCC 9811 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis ATCC 9811 3 1881450 41.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/175/905/GCA_006175905.1_ASM617590v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BG PRJNA532510 1303 SAMN11401878 ASM617590v1 Contig HGAP v. 4 2019-04-12T05:22:03.987 missing missing PacBio Sequel BIOFABRICATION for NIFE 257.0x 94.12 99.82 0.38 99.97 0.06 GCF_006175905.1 SSNB01 1764 1875 1875 38 12 60 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_006175905.1 HMT-707 ATCC 9811 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis ATCC 9811 3 1881450 41.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/175/905/GCA_006175905.1_ASM617590v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BG PRJNA532510 1303 SAMN11401878 ASM617590v1 Contig HGAP v. 4 2019-04-12T05:22:03.987 missing missing PacBio Sequel BIOFABRICATION for NIFE 257.0x 94.12 99.82 0.38 99.97 0.06 GCF_006175905.1 SSNB01 1764 1875 1875 38 12 60 1 Streptococcus_oralis_HMT_071_398_707 GCA_006228205.1 HMT-558 UCCLBBS124 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-558 Levilactobacillus brevis UCCLBBS124 5 2728238 45.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/228/205/GCA_006228205.1_ASM622820v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis PRJNA429576 1580 SAMN08351564 ASM622820v1 Complete Genome SMRT portal v. v2.3.1 2018-01-11T10:15:03.400 Singapore Beer Keg PacBio University College Cork 422.4x 99.05 99.06 0 100 0.07 GCF_006228205.1 2690 2797 2797 27 15 64 1 Levilactobacillus_brevis_homd_HMT_558 GCA_006228265.1 HMT-558 UCCLB95 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-558 Levilactobacillus brevis UCCLB95 3 2528774 45.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/228/265/GCA_006228265.1_ASM622826v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis PRJNA429618 1580 SAMN08354483 ASM622826v1 Complete Genome SMRT portal v. v2.3.1 2018-01-11T11:34:02.726 Netherlands PacBio University College Cork 186.8x 98.77 99.06 0 99.99 0.04 GCF_006228265.1 2488 2596 2596 28 15 64 1 Levilactobacillus_brevis_homd_HMT_558 GCA_006228305.1 HMT-558 UCCLB521 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-558 Levilactobacillus brevis UCCLB521 6 2416054 45.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/228/305/GCA_006228305.1_ASM622830v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis PRJNA429624 1580 SAMN08354550 ASM622830v1 Complete Genome SMRT portal v. v2.3.1 2018-01-11T11:42:02.430 Netherlands PacBio University College Cork 299.4x 97.61 99.06 0 100 0.47 GCF_006228305.1 2382 2493 2493 33 15 62 1 Levilactobacillus_brevis_homd_HMT_558 GCA_006228325.1 HMT-707 1643 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 1643 1 1898954 41.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/228/325/GCA_006228325.1_ASM622832v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp006228325 PRJNA542100 2576376 SAMN06040852 ASM622832v1 Complete Genome Unicycler v. 0.4.7 2016-11-18T15:45:03.630 USA Infective endocarditits Illumina HiSeq; PacBio RSII The University of Texas at Dallas 100.0x 99.87 1.13 99.98 0.2 GCF_006228325.1 1835 1951 1951 41 12 62 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_006228325.1 HMT-707 1643 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 1643 1 1898954 41.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/228/325/GCA_006228325.1_ASM622832v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp006228325 PRJNA542100 2576376 SAMN06040852 ASM622832v1 Complete Genome Unicycler v. 0.4.7 2016-11-18T15:45:03.630 USA Infective endocarditits Illumina HiSeq; PacBio RSII The University of Texas at Dallas 100.0x 99.87 1.13 99.98 0.2 GCF_006228325.1 1835 1951 1951 41 12 62 1 Streptococcus_oralis_HMT_071_398_707 GCA_006240615.1 HMT-530 T51788 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T51788 5 2479049 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/240/615/GCA_006240615.1_ASM624061v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289889 ASM624061v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:18.713 USA Wound Shoulder Right OPERATIVE Illumina MiSeq University of Washington 70.0x 99.93 98.94 0.03 100 0.11 GCF_006240615.1 QJIT01 2297 2371 2371 23 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_006240625.1 HMT-530 T55800 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T55800 6 2535399 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/240/625/GCA_006240625.1_ASM624062v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289890 ASM624062v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:18.730 USA Wound Right Skin OPERATIVE Illumina MiSeq University of Washington 92.0x 99.55 100 0 100 0.31 GCF_006240625.1 QJIS01 2343 2420 2420 24 4 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_006240665.1 HMT-530 T45321 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T45321 6 2517904 59.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/240/665/GCA_006240665.1_ASM624066v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289888 ASM624066v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:18.697 USA Wound Shoulder Right EXPLANT STEM Illumina MiSeq University of Washington 40.0x 99.96 100 0 99.98 0.01 GCF_006240665.1 QJIU01 2362 2435 2435 23 3 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_006240685.1 HMT-530 T77719 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T77719 5 2477474 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/240/685/GCA_006240685.1_ASM624068v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289886 ASM624068v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:18.660 USA Tissue Shoulder Right SUTURE Illumina MiSeq University of Washington 57.0x 99.96 99.43 0.03 100 0.12 GCF_006240685.1 QJIW01 2297 2372 2372 23 4 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_006240705.1 HMT-530 T77864 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T77864 5 2546045 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/240/705/GCA_006240705.1_ASM624070v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289885 ASM624070v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:18.647 USA Tissue NO 1 Shoulder Right COLLAR MEMBRANE Illumina MiSeq University of Washington 57.0x 99.17 100 0 99.99 0.12 GCF_006240705.1 QJIX01 2353 2428 2428 23 3 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_006240735.1 HMT-530 T27324 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes T27324 5 2534886 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/240/735/GCA_006240735.1_ASM624073v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA474022 1747 SAMN09289884 ASM624073v1 Contig Geneious v. 9.0.5 2018-05-31T15:15:18.627 USA Wound Right Shoulder NON OPERATIVE eSwab Illumina MiSeq University of Washington 130.0x 99.57 100 0 100 0.31 GCF_006240735.1 QJIY01 2340 2417 2417 24 4 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_006364675.1 HMT-550 FDAARGOS_773 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus FDAARGOS_773 3 2787057 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/364/675/GCA_006364675.1_ASM636467v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA231221 1280 SAMN11056488 ASM636467v1 Complete Genome canu v. 1.4, SPAdes v. 3.11.1 2019-03-05T13:52:08.313 USA:VA ATCC Isolate Pacbio; Illumina US Food and Drug Administration 1716.0x 99.99 99.51 0.08 100 0.11 GCF_006364675.1 2530 2725 2725 113 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_006385365.1 HMT-613 ATCC 43037 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia ATCC 43037 87 3296274 47.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/385/365/GCA_006385365.1_ASM638536v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJNA548889 28112 SAMN12058270 ASM638536v1 Scaffold SOAPdenovo v. 2.04 2019-06-14T09:36:04.670 USA Human periodontal pocket Illumina MiSeq; Illumina HiSeq Universitaet fuer Bodenkultur Wien 990.0x 99.99 98.91 0.86 99.95 0.48 GCF_006385365.1 VFJI01 2750 2826 2826 26 5 44 1 Tannerella_forsythia_homd_HMT_613 GCA_006385805.1 HMT-073 E24 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis E24 5 1950659 42.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/385/805/GCA_006385805.1_ASM638580v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA548721 2589788 SAMN12046468 ASM638580v1 Contig Velvet v. 1.2.09 2019-06-13T10:22:06.600 China respiratory tract Illumina shenyang medical colleage 200.0x 100 0.11 99.95 0 GCF_006385805.1 VFSG01 1878 1972 1972 38 5 50 1 Streptococcus_australis_homd_HMT_073 GCA_006386535.1 HMT-686 35 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 35 39 1929542 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/386/535/GCA_006386535.1_ASM638653v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA541201 1309 SAMN11579665 ASM638653v1 Contig SOAPdenovo v. 2.04 2019-05-06T02:39:03.613 China: Beijing oral cavity Illumina MiSeq Institute of Microbiology, Chinese Academy of Sciences 331.0x 99.18 100 0.56 100 0.1 GCF_006386535.1 SZVN01 1807 1876 1876 31 3 34 1 Streptococcus_mutans_homd_HMT_686 GCA_006439055.1 HMT-003 E6.1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-003 Sphingomonas glacialis E6.1 24 5126166 65.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/439/055/GCA_006439055.1_ASM643905v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas;s__Sphingomonas glacialis_A PRJNA496474 658225 SAMN10244989 ASM643905v1 Contig A5 pipeline (Miseq, Linux) v. 20140521 2018-10-15T15:35:15.636 Canada: Axel Heiberg Island Ice-wedge polygon Illumina MiSeq Universite Laval 87.0x 90.17 99.16 2.5 100 1.2 GCF_006439055.1 RCZC01 4637 4745 4745 40 5 62 1 Sphingomonas_glacialis_homd_HMT_003 GCA_006439125.1 HMT-036 CCUG 31732 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 CCUG 31732 80 1892724 38.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/439/125/GCA_006439125.1_ASM643912v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA509094 726 SAMN10537238 ASM643912v1 Contig MGAP v. 0.0.1 2018-12-09T23:46:04.040 Sweden Illumina HiSeq Menzies School of Health Research 107.0x 93.91 99.49 0.49 100 0.41 GCF_006439125.1 SDPJ01 1806 1889 1889 27 7 48 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_006439155.1 HMT-036 CCUG 11096 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 CCUG 11096 60 1934421 38.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/439/155/GCA_006439155.1_ASM643915v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA509094 726 SAMN10537235 ASM643915v1 Contig MGAP v. 0.0.1 2018-12-09T23:46:03.990 Sweden Illumina HiSeq Menzies School of Health Research 114.0x 93.93 99.27 0.34 100 0.04 GCF_006439155.1 SDPG01 1816 1898 1898 28 7 46 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_006439165.1 HMT-036 65151 B Hi-4 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 65151 B Hi-4 13 1897573 38.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/439/165/GCA_006439165.1_ASM643916v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA509094 726 SAMN10537231 ASM643916v1 Contig MGAP v. 0.0.1 2018-12-09T23:46:03.923 Australia Illumina HiSeq Menzies School of Health Research 165.0x 93.88 99.49 0.23 100 0.25 GCF_006439165.1 SDPF01 1762 1867 1867 43 12 49 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_006439215.1 HMT-036 60982 B Hi-1 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 60982 B Hi-1 13 1921666 38.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/439/215/GCA_006439215.1_ASM643921v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus seminalis PRJNA509094 726 SAMN10537218 ASM643921v1 Contig MGAP v. 0.0.1 2018-12-09T23:46:03.713 Australia Illumina HiSeq Menzies School of Health Research 202.0x 93.78 99.49 0.08 100 0.06 GCF_006439215.1 SDPD01 1832 1932 1932 32 14 53 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_006439235.1 HMT-036 60971 B Hi-3 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 60971 B Hi-3 13 1895161 38.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/439/235/GCA_006439235.1_ASM643923v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA509094 726 SAMN10537217 ASM643923v1 Contig MGAP v. 0.0.1 2018-12-09T23:46:03.697 Australia Illumina HiSeq Menzies School of Health Research 200.0x 93.88 99.49 0 100 0.24 GCF_006439235.1 SDPC01 1759 1860 1860 43 7 50 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_006539665.1 HMT-597 NBRC 14791 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-597 Bradyrhizobium elkanii NBRC 14791 289 9260234 63.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/539/665/GCA_006539665.1_ASM653966v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii PRJDB5987 29448 SAMD00097547 ASM653966v1 Contig newbler v. 3.0 2019-06-14T01:01:30.066 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 98.0x 99.99 100 0.89 100 0.74 GCF_006539665.1 BJNL01 8694 8807 8807 57 3 52 1 Bradyrhizobium_elkanii_homd_HMT_597 GCA_006540205.1 HMT-614 NBRC 15717 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-614 Lysinibacillus fusiformis NBRC 15717 71 4763064 37.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/540/205/GCA_006540205.1_ASM654020v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus;s__Lysinibacillus fusiformis PRJDB6026 28031 SAMD00097594 ASM654020v1 Contig newbler v. 3.0 2017-10-19T01:00:46.836 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 123.0x 99.99 99.34 0.33 100 0.35 GCF_006540205.1 BJOM01 4713 4853 4853 91 2 46 1 Lysinibacillus_fusiformis_homd_HMT_614 GCA_006540355.1 HMT-116 TCR-3 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis TCR-3 37 2511037 32.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/540/355/GCA_006540355.1_ASM654035v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA503754 29388 SAMN10373493 ASM654035v1 Contig SPAdes v. 3.12.0 2018-11-04T21:40:07.203 Japan: Tokyo Laboratory environment IonTorrent Teikyo University Institute of Medical Mycology 160.0x 98.85 99.79 0.38 99.99 0.73 GCF_006540355.1 RIYT01 2410 2492 2492 53 2 26 1 Staphylococcus_capitis_homd_HMT_116 GCA_006542645.1 HMT-964 3BBH6 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-964 Alistipes onderdonkii 3BBH6 1 3507492 58.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/542/645/GCA_006542645.1_Aond_1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii PRJDB8150 2585117 SAMD00166230 Aond_1.0 Complete Genome Unicycler v. 0.4.6 2019-04-03T01:00:43.300 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 550.0x 96.89 99.28 0.64 99.99 0.68 GCF_006542645.1 2927 2996 2996 13 6 49 1 Alistipes_onderdonkii_homd_HMT_964 GCA_006542705.1 HMT-964 5CPYCFAH4 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-964 Alistipes onderdonkii 5CPYCFAH4 1 3312673 57.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/542/705/GCA_006542705.1_Aond_2.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii PRJDB8150 2585117 SAMD00166233 Aond_2.0 Complete Genome Unicycler v. 0.4.6 2019-04-03T01:00:43.407 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 900.0x 97.95 98.8 0.48 99.99 0.39 GCF_006542705.1 2780 2855 2855 19 6 49 1 Alistipes_onderdonkii_homd_HMT_964 GCA_006542725.1 HMT-964 5NYCFAH2 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-964 Alistipes onderdonkii 5NYCFAH2 1 3312682 57.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/542/725/GCA_006542725.1_Aond_3.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii PRJDB8150 2585117 SAMD00166234 Aond_3.0 Complete Genome Unicycler v. 0.4.6 2019-04-03T01:00:43.427 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 470.0x 97.95 98.8 0.48 99.99 0.39 GCF_006542725.1 2787 2862 2862 19 6 49 1 Alistipes_onderdonkii_homd_HMT_964 GCA_006546825.1 HMT-893 CCUG 34288 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 CCUG 34288 19 3168954 68.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/546/825/GCA_006546825.1_ASM654682v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA305687 544580 SAMN12142211 ASM654682v1 Scaffold CLC Genomics Workbench v. 11 2019-06-26T11:29:04.330 USA:New York sputum Illumina University of Gothenburg - CCUG 913.0x 99.99 100 0.47 100 0.04 GCF_006546825.1 VICC01 2596 2663 2663 14 3 49 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_006546825.1 HMT-893 CCUG 34288 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 CCUG 34288 19 3168954 68.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/546/825/GCA_006546825.1_ASM654682v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA305687 544580 SAMN12142211 ASM654682v1 Scaffold CLC Genomics Workbench v. 11 2019-06-26T11:29:04.330 USA:New York sputum Illumina University of Gothenburg - CCUG 913.0x 99.99 100 0.47 100 0.04 GCF_006546825.1 VICC01 2596 2663 2663 14 3 49 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_006546835.1 HMT-849 CCUG 34287 Named Cultivated Oral (Abundance: Medium) HMT-849 Actinomyces johnsonii CCUG 34287 42 3348294 67.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/546/835/GCA_006546835.1_ASM654683v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces johnsonii PRJNA305687 544581 SAMN12142209 ASM654683v1 Scaffold CLC Genomics Workbench v. 11 2019-06-26T11:22:04.583 Missing Gingival crevice Illumina University of Gothenburg - CCUG 879.0x 99.99 100 0.95 100 0.27 GCF_006546835.1 VICB01 2777 2849 2849 16 3 52 1 Actinomyces_johnsonii_homd_HMT_849 GCA_006546965.1 HMT-972 H207 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-972 Bacteroides xylanisolvens H207 3 6547285 41.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/546/965/GCA_006546965.1_ASM654696v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens PRJNA484981 371601 SAMN12137749 ASM654696v1 Complete Genome Unicycler v. 0.4.8-beta 2019-06-25T17:21:04.066 USA:Seattle Illumina HiSeq; PacBio Sequel University of Washington 53.0x 97.35 99.46 0 99.99 0.87 GCF_006546965.1 5249 5362 5362 21 15 76 1 Bacteroides_xylanisolvens_homd_HMT_972 GCA_006547285.1 HMT-531 SC1000 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans SC1000 18 2099973 44.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/547/285/GCA_006547285.1_ASM654728v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA387021 714 SAMN07138300 ASM654728v1 Scaffold Velvet v. 1.2.09 2017-05-17T13:19:02.657 USA Illumina MiSeq Bumgarner laboratory, Department of Microbiology, University of Washington 40.4x 98.92 99.29 0.23 99.99 0.32 GCF_006547285.1 NHNH01 2093 2211 2211 60 8 49 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_006715585.1 HMT-692 NRRL B-3805 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-692 Mycolicibacterium neoaurum NRRL B-3805 1 5366707 67.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/715/585/GCA_006715585.1_ASM671558v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium neoaurum_A PRJNA536291 2768412 SAMN11510616 ASM671558v1 Contig HGAP v. smrtlink/6.0.0.47835, HGAP 4 (0.2.1) 2019-04-25T19:38:35.260 missing missing PacBio DOE Joint Genome Institute 475.0x 100 1.25 100 0.03 GCF_006715585.1 VFNN01 5085 5169 5169 24 6 53 1 Mycolicibacterium_neoaurum_homd_HMT_692 GCA_006715895.1 HMT-834 SLBN-26 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-834 Pseudomonas otitidis SLBN-26 1 6298475 67.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/715/895/GCA_006715895.1_ASM671589v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas;s__Metapseudomonas otitidis PRJNA536284 2768443 SAMN11510838 ASM671589v1 Contig HGAP v. smrtlink/6.0.0.47835, HGAP 4 (0.2.1) 2019-04-25T19:42:42.916 USA: California missing PacBio DOE Joint Genome Institute 420.0x 100 0.79 100 0.03 GCF_006715895.1 VFOB01 5698 5872 5872 85 12 76 1 Pseudomonas_otitidis_homd_HMT_834 GCA_006716515.1 HMT-799 106 Named Cultivated Vaginal (Abundance: Medium) HMT-799 Ureaplasma parvum 106 1 741809 25.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/716/515/GCA_006716515.1_ASM671651v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum PRJNA548992 134821 SAMN12061317 ASM671651v1 Complete Genome Unicycler v. v.0.4.7 2019-06-15T07:08:05.383 China: Hangzhou semen Illumina NextSeq; Oxford Nanopore GridION Sir Run Run Shaw Hospital, Zhejiang University School of Medicine 100.0x 99.57 99.05 0.14 97.14 0.06 GCF_006716515.1 1248 1289 1289 4 6 30 1 Ureaplasma_parvum_homd_HMT_799 GCA_006716905.1 HMT-216 DSM 7270 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-216 Acidovorax temperans DSM 7270 6 4651394 63.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/716/905/GCA_006716905.1_ASM671690v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax;s__Acidovorax temperans PRJNA332047 80878 SAMN05443405 ASM671690v1 Contig HGAP v. smrtlink/6.0.0.47835, HGAP 4 (0.2.1) 2016-07-26T21:05:24.330 missing missing PacBio DOE Joint Genome Institute 572.0x 99.49 0.76 99.98 0.29 GCF_006716905.1 VFPV01 4300 4393 4393 23 12 57 1 Acidovorax_temperans_homd_HMT_216 GCA_006739205.1 HMT-686 NBRC 13955 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NBRC 13955 1 2018796 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/739/205/GCA_006739205.1_ASM673920v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJDB8042 1309 SAMD00169830 ASM673920v1 Complete Genome Unicycler v. 0.4.4 2019-04-26T01:01:10.060 missing Illumina MiSeq; ONT GridION Biological Resource Center, National Institute of Technology and Evaluation (NBRC) 989.0x 99.99 100 0 100 0.06 GCF_006739205.1 1888 1998 1998 29 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_006739385.1 HMT-530 NBRC 107605 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes NBRC 107605 1 2494738 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/739/385/GCA_006739385.1_ASM673938v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJDB8042 1734925 SAMD00169823 ASM673938v1 Complete Genome Unicycler v. 0.4.4 2019-04-26T01:01:09.843 missing Illumina MiSeq; ONT GridION Biological Resource Center, National Institute of Technology and Evaluation (NBRC) 1300.0x 99.97 99.43 0.03 100 0.06 GCF_006739385.1 2306 2386 2386 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_006741845.1 HMT-468 NBRC 13719 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-468 Bacillus subtilis NBRC 13719 2 4295305 43.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/741/845/GCA_006741845.1_ASM674184v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis PRJDB8042 135461 SAMD00169822 ASM674184v1 Complete Genome Unicycler v. 0.4.4 2019-04-26T01:01:09.820 missing Illumina MiSeq; ONT GridION Biological Resource Center, National Institute of Technology and Evaluation (NBRC) 698.0x 99.99 99.81 0.35 100 0.1 GCF_006741845.1 4309 4528 4528 99 30 89 1 Bacillus_subtilis_homd_HMT_468 GCA_006742205.1 HMT-601 NBRC 100911 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis NBRC 100911 2 2427041 32.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/742/205/GCA_006742205.1_ASM674220v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJDB8042 1282 SAMD00169832 ASM674220v1 Complete Genome Unicycler v. 0.4.4 2019-04-26T01:01:10.150 missing Illumina HiSeq; ONT GridION Biological Resource Center, National Institute of Technology and Evaluation (NBRC) 2187.0x 99.99 99.81 0 99.98 0.05 GCF_006742205.1 2193 2354 2354 81 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_006757745.1 HMT-010 NBRC 102413 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-010 Acinetobacter radioresistens NBRC 102413 9 3433938 41.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/757/745/GCA_006757745.1_ASM675774v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens PRJDB54 981334 SAMD00041796 ASM675774v1 Complete Genome Unicycler v. 0.4.4 2015-10-09T01:00:39.000 not applicable Illumina HiSeq; ONT GridION National Institute of Technology and Evaluation 727.0x 99.99 100 0.14 100 0.02 GCF_006757745.1 3213 3318 3318 15 18 71 1 Acinetobacter_radioresistens_homd_HMT_010 GCA_006771025.1 HMT-245 PG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-245 Roseomonas mucosa PG 5 4974701 70.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/771/025/GCA_006771025.1_ASM677102v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas mucosa PRJNA386464 207340 SAMN06948510 ASM677102v1 Complete Genome canu v. 1.0; bowtie2 v. 2.2.4; pilon v. 1.16; MIRA v. 4.0.2 2017-05-12T10:10:20.570 USA: Bethesda, Maryland Clinical, healthy, human skin Illumina MiSeq; PacBio Igenbio, Inc 100.0x 99.15 100 0 100 0.8 GCF_006771025.1 4526 4639 4639 30 15 67 1 Roseomonas_mucosa_homd_HMT_245 GCA_006874565.1 HMT-537 PLGBS13 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-537 Streptococcus agalactiae PLGBS13 1 2095031 35.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/874/565/GCA_006874565.1_ASM687456v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae PRJNA473176 1311 SAMN09267180 ASM687456v1 Complete Genome clc genomic benchwork v. 7 2018-05-25T18:19:05.157 Canada: Alberta Soft tissue wound 454 Roche & Illumina Misq University of Alberta 120.0x 99.12 100 0.18 100 0.26 GCF_006874565.1 2021 2167 2167 44 21 80 1 Streptococcus_agalactiae_homd_HMT_537 GCA_006974125.1 HMT-663 X28 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-663 Stenotrophomonas maltophilia X28 1 4554224 66.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/974/125/GCA_006974125.1_ASM697412v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas maltophilia_O PRJNA524726 40324 SAMN11032470 ASM697412v1 Complete Genome FALCON v. Sep-2019 2019-02-27T21:53:06.750 China:North China Plain aerobic granular sludge Illumina HiSeq; PacBio RSII Beijing Normal University 56.5x 93.65 100 0 100 0.24 GCF_006974125.1 4063 4170 4170 31 4 71 1 Stenotrophomonas_maltophilia_homd_HMT_663 GCA_007004175.1 HMT-127 SDA3 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis SDA3 34 2289009 31.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/004/175/GCA_007004175.1_ASM700417v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA552487 1290 SAMN12211901 ASM700417v1 Contig SPAdes v. 3.13.0 2019-07-03T12:28:04.350 USA: New Mexico, Sevilleta Des desert soil Illumina HiSeq University of New Hampshire 271.0x 99.07 99.38 1.14 99.99 0.54 GCF_007004175.1 VJML01 2256 2380 2380 57 6 60 1 Staphylococcus_hominis_homd_HMT_127 GCA_007004245.1 HMT-127 SDC3 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis SDC3 20 2178430 31.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/004/245/GCA_007004245.1_ASM700424v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA552487 1290 SAMN12211905 ASM700424v1 Contig SPAdes v. 3.13.0 2019-07-03T12:28:04.420 USA: New Mexico, Sevilleta Des desert soil Illumina HiSeq University of New Hampshire 180.6x 99.2 99.38 0.65 99.99 0 GCF_007004245.1 VJMN01 2076 2194 2194 52 7 58 1 Staphylococcus_hominis_homd_HMT_127 GCA_007004265.1 HMT-120 SDB1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SDB1 30 2468753 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/004/265/GCA_007004265.1_ASM700426v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA552487 1283 SAMN12211902 ASM700426v1 Contig SPAdes v. 3.13.0 2019-07-03T12:28:04.366 USA: New Mexico, Sevilleta Des desert soil Illumina HiSeq University of New Hampshire 165.3x 97.39 99.62 0 100 0.1 GCF_007004265.1 VJMO01 2405 2550 2550 80 6 58 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_007004275.1 HMT-120 SDA2 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SDA2 27 2444677 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/004/275/GCA_007004275.1_ASM700427v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA552487 1283 SAMN12211900 ASM700427v1 Contig SPAdes v. 3.13.0 2019-07-03T12:28:04.333 USA: New Mexico, Sevilleta Des desert soil Illumina HiSeq University of New Hampshire 167.1x 97.37 98.94 0 99.99 0.02 GCF_007004275.1 VJMP01 2394 2534 2534 76 6 57 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_007004385.1 HMT-127 SDB3 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis SDB3 33 2212016 31.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/004/385/GCA_007004385.1_ASM700438v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA552487 1290 SAMN12211904 ASM700438v1 Contig SPAdes v. 3.13.0 2019-07-03T12:28:04.403 USA: New Mexico, Sevilleta Des desert soil Illumina HiSeq University of New Hampshire 80.0x 99.24 99.38 0.17 100 0.37 GCF_007004385.1 VJNI01 2157 2282 2282 53 11 60 1 Staphylococcus_hominis_homd_HMT_127 GCA_007097425.1 HMT-450 2274 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 2274 85 2865662 61.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/097/425/GCA_007097425.1_ASM709742v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA510229 3139423 SAMN12257092 ASM709742v1 Contig SPAdes v. 3.10.0 2019-07-11T20:35:04.103 Brazil urine IonTorrent Federal University of Bahia 1068.0x 96.67 98.6 0 99.75 2.81 GCF_007097425.1 VKDK01 2779 2847 0 8 8 52 0 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_007097425.1 HMT-450 2274 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 2274 85 2865662 61.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/097/425/GCA_007097425.1_ASM709742v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA510229 3139423 SAMN12257092 ASM709742v1 Contig SPAdes v. 3.10.0 2019-07-11T20:35:04.103 Brazil urine IonTorrent Federal University of Bahia 1068.0x 96.67 98.6 0 99.75 2.81 GCF_007097425.1 VKDK01 2779 2847 0 8 8 52 0 Corynebacterium_aurimucosum_HMT_034_450 GCA_007097445.1 HMT-445 2218 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 2218 52 2737922 60.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/097/445/GCA_007097445.1_ASM709744v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA510229 3051103 SAMN12257096 ASM709744v1 Contig SPAdes v. 3.10.0 2019-07-11T20:37:05.216 Brazil urine IonTorrent Federal University of Bahia 806.0x 96.84 98.35 0 99.4 2.82 GCF_007097445.1 VKDH01 2709 2778 0 8 7 53 1 Corynebacterium_hesseae_homd_HMT_445 GCA_007097455.1 HMT-445 2271 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 2271 41 2657049 61.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/097/455/GCA_007097455.1_ASM709745v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA510229 3051103 SAMN12257095 ASM709745v1 Contig SPAdes v. 3.10.0 2019-07-11T20:37:04.130 Brazil urine IonTorrent Federal University of Bahia 429.0x 96.9 99.34 0 99.21 0.94 GCF_007097455.1 VKDG01 2565 2633 0 8 6 53 1 Corynebacterium_hesseae_homd_HMT_445 GCA_007097675.1 HMT-445 2226 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 2226 58 2742396 61.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/097/675/GCA_007097675.1_ASM709767v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA510229 3051103 SAMN12257094 ASM709767v1 Contig SPAdes v. 3.10.0 2019-07-11T20:36:05.056 Brazil urine IonTorrent Federal University of Bahia 196.0x 96.95 99.01 0.57 96.38 1.2 GCF_007097675.1 VKDJ01 2694 2762 0 8 7 52 1 Corynebacterium_hesseae_homd_HMT_445 GCA_007109275.1 HMT-445 2299 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 2299 94 2720157 61.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/109/275/GCA_007109275.1_ASM710927v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA510229 3051103 SAMN12257093 ASM710927v1 Contig SPAdes v. 3.10.0 2019-07-11T20:36:04.046 Brazil urine IonTorrent Federal University of Bahia 965.0x 96.95 98.9 0.35 99.8 1 GCF_007109275.1 VKDI01 2621 2689 0 8 7 52 1 Corynebacterium_hesseae_homd_HMT_445 GCA_007197715.1 HMT-813 83VPs-KB5 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum 83VPs-KB5 1 2082055 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/197/715/GCA_007197715.1_ASM719771v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA554245 29394 SAMN12259797 ASM719771v1 Complete Genome Unicycler v. v0.4.7 2019-07-12T06:55:03.833 Germany: Munster Oxford Nanopore MiniION; Illumina Statens Serum Institut 66.1x 97.64 99.46 1.9 99.26 0.39 GCF_007197715.1 1994 2124 2124 61 12 56 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_007475365.1 HMT-398 F0392 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani F0392 1 1926555 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/475/365/GCA_007475365.1_ASM747536v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AX PRJNA508968 1458253 SAMN10534501 ASM747536v1 Complete Genome HGAP v. 5.1.0.265142 2018-12-07T15:46:04.503 unknown oral cavity PacBio Sequel The Research Institute at Nationwide Childrens Hospital 1643.0x 93.67 99.87 0.2 99.99 0.31 GCF_007475365.1 1847 1963 1963 41 12 62 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_007475365.1 HMT-398 F0392 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani F0392 1 1926555 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/475/365/GCA_007475365.1_ASM747536v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AX PRJNA508968 1458253 SAMN10534501 ASM747536v1 Complete Genome HGAP v. 5.1.0.265142 2018-12-07T15:46:04.503 unknown oral cavity PacBio Sequel The Research Institute at Nationwide Childrens Hospital 1643.0x 93.67 99.87 0.2 99.99 0.31 GCF_007475365.1 1847 1963 1963 41 12 62 1 Streptococcus_oralis_HMT_071_398_707 GCA_007559235.1 HMT-207 LMG 29598 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense LMG 29598 23 2529719 65.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/559/235/GCA_007559235.1_ASM755923v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA555895 2054421 SAMN12335367 ASM755923v1 Contig SPAdes v. 3.11.0 2019-07-22T12:12:03.626 India: Nashik fresh water Illumina MiSeq National Microbiology Laboratory 72.0x 99.99 99.34 0.04 99.99 0.21 GCF_007559235.1 VMHH01 2288 2359 2359 10 4 56 1 Corynebacterium_gottingense_homd_HMT_207 GCA_007666555.1 HMT-063 DE0529 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-063 Corynebacterium singulare DE0529 95 2888281 59.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/666/555/GCA_007666555.1_ASM766655v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium singulare PRJNA543692 161899 SAMN11792689 ASM766655v1 Scaffold SPAdes v. v3.11.1 2019-05-21T04:23:14.840 USA: North Carolina, Durham environmental BGISEQ BGI 100.0x 96.48 99.78 0.44 100 0.6 GCF_007666555.1 VDPI01 2674 2739 2739 8 3 53 1 Corynebacterium_singulare_homd_HMT_063 GCA_007667085.1 HMT-682 DE0496 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa DE0496 198 2484173 50.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/667/085/GCA_007667085.1_ASM766708v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA543692 490 SAMN11792656 ASM766708v1 Scaffold SPAdes v. v3.11.1 2019-05-21T04:23:14.260 USA: North Carolina, Durham environmental BGISEQ BGI 100.0x 94.2 99.36 0.45 100 0 GCF_007667085.1 VDQK01 2166 2233 2233 17 3 46 1 Neisseria_mucosa_homd_HMT_682 GCA_007667125.1 HMT-682 DE0493 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa DE0493 187 2480214 50.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/667/125/GCA_007667125.1_ASM766712v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA543692 490 SAMN11792653 ASM766712v1 Scaffold SPAdes v. v3.11.1 2019-05-21T04:23:14.203 USA: North Carolina, Durham environmental BGISEQ BGI 100.0x 94.19 99.53 0.7 100 0 GCF_007667125.1 VDQM01 2163 2231 2231 18 3 46 1 Neisseria_mucosa_homd_HMT_682 GCA_007667915.1 HMT-087 DE0446 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-087 Micrococcus luteus DE0446 107 2575371 72.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/667/915/GCA_007667915.1_ASM766791v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus;s__Micrococcus luteus PRJNA543692 465515 SAMN11792606 ASM766791v1 Scaffold SPAdes v. v3.11.1 2019-05-21T04:23:13.336 USA: North Carolina, Durham environmental BGISEQ BGI 100.0x 97.25 98.7 1.38 100 0.26 GCF_007667915.1 VDRZ01 2309 2382 2382 15 3 54 1 Micrococcus_luteus_homd_HMT_087 GCA_007671985.1 HMT-059 DE0547 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum DE0547 220 2628464 56.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/671/985/GCA_007671985.1_ASM767198v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA543692 43769 SAMN11792707 ASM767198v1 Scaffold SPAdes v. v3.11.1 2019-05-21T04:23:15.183 USA: North Carolina, Durham environmental BGISEQ BGI 100.0x 97.65 99.78 0.26 99.93 0.71 GCF_007671985.1 VDUD01 2383 2450 2450 10 7 49 1 Corynebacterium_propinquum_homd_HMT_059 GCA_007672025.1 HMT-059 DE0530 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum DE0530 58 2582419 56.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/672/025/GCA_007672025.1_ASM767202v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA543692 43769 SAMN11792690 ASM767202v1 Scaffold SPAdes v. v3.11.1 2019-05-21T04:23:14.866 USA: North Carolina, Durham environmental BGISEQ BGI 100.0x 97.65 99.78 0.13 99.91 0.06 GCF_007672025.1 VDUE01 2370 2429 2429 7 3 48 1 Corynebacterium_propinquum_homd_HMT_059 GCA_007672555.1 HMT-445 DE0417 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 DE0417 33 2668890 61.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/672/555/GCA_007672555.1_ASM767255v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA543692 169292 SAMN11792577 ASM767255v1 Scaffold SPAdes v. v3.11.1 2019-05-21T04:23:12.830 USA: North Carolina, Durham environmental BGISEQ BGI 100.0x 88.5 99.78 0 99.98 0.01 GCF_007672555.1 VDSV01 2463 2526 0 8 3 51 1 Corynebacterium_hesseae_homd_HMT_445 GCA_007672735.1 HMT-445 DE0407 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 DE0407 63 2675843 61.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/672/735/GCA_007672735.1_ASM767273v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA543692 169292 SAMN11792567 ASM767273v1 Scaffold SPAdes v. v3.11.1 2019-05-21T04:23:12.660 USA: North Carolina, Durham environmental BGISEQ BGI 100.0x 88.5 99.78 0 99.98 0.01 GCF_007672735.1 VDTF01 2468 2532 0 8 3 52 1 Corynebacterium_hesseae_homd_HMT_445 GCA_007677545.1 HMT-087 DE0230 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-087 Micrococcus luteus DE0230 270 2746747 72.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/677/545/GCA_007677545.1_ASM767754v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus;s__Micrococcus luteus PRJNA543692 465515 SAMN11792390 ASM767754v1 Scaffold SPAdes v. v3.11.1 2019-05-21T04:23:09.073 USA: North Carolina, Durham environmental BGISEQ BGI 100.0x 97.31 98.65 2.98 100 0.24 GCF_007677545.1 VECV01 2475 2548 2548 15 5 52 1 Micrococcus_luteus_homd_HMT_087 GCA_007678885.1 HMT-445 DE0142 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 DE0142 74 2679379 61.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/678/885/GCA_007678885.1_ASM767888v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA543692 169292 SAMN11792302 ASM767888v1 Scaffold SPAdes v. v3.11.1 2019-05-21T04:23:07.530 USA: North Carolina, Durham environmental BGISEQ BGI 100.0x 88.5 99.78 0.06 99.98 0.01 GCF_007678885.1 VEFK01 2462 2525 0 8 3 51 1 Corynebacterium_hesseae_homd_HMT_445 GCA_007786365.1 HMT-450 15-4290 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 15-4290 95 2875801 60.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/786/365/GCA_007786365.1_ASM778636v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA510229 169292 SAMN12175573 ASM778636v1 Contig SPAdes v. 3.10.0 2019-07-01T21:51:06.410 Spain Articular liquid IonTorrent Federal University of Bahia 721.0x 89.65 99.12 0.13 99.99 1.3 GCF_007786365.1 VMTX01 2695 2763 0 8 6 53 1 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_007786365.1 HMT-450 15-4290 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 15-4290 95 2875801 60.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/786/365/GCA_007786365.1_ASM778636v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA510229 169292 SAMN12175573 ASM778636v1 Contig SPAdes v. 3.10.0 2019-07-01T21:51:06.410 Spain Articular liquid IonTorrent Federal University of Bahia 721.0x 89.65 99.12 0.13 99.99 1.3 GCF_007786365.1 VMTX01 2695 2763 0 8 6 53 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_007786375.1 HMT-034 14-2523 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 14-2523 111 2632856 60.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/786/375/GCA_007786375.1_ASM778637v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA510229 169292 SAMN12175569 ASM778637v1 Contig SPAdes v. 3.10.0 2019-07-01T21:50:05.157 Spain Urine sample IonTorrent Federal University of Bahia 17.0x 97.12 95.34 0.82 96.75 2.26 GCF_007786375.1 VMTY01 2697 2757 0 7 4 48 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_007786375.1 HMT-034 14-2523 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 14-2523 111 2632856 60.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/786/375/GCA_007786375.1_ASM778637v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA510229 169292 SAMN12175569 ASM778637v1 Contig SPAdes v. 3.10.0 2019-07-01T21:50:05.157 Spain Urine sample IonTorrent Federal University of Bahia 17.0x 97.12 95.34 0.82 96.75 2.26 GCF_007786375.1 VMTY01 2697 2757 0 7 4 48 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_007786415.1 HMT-207 NML180780 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense NML180780 30 2584921 65.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/786/415/GCA_007786415.1_ASM778641v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA556156 2598459 SAMN12341838 ASM778641v1 Contig SPAdes v. 3.9.0 2019-07-23T09:28:05.170 Canada: Prince Edward Island shoulder tissue Illumina MiSeq National Microbiology Laboratory 125.0x 99.34 0 99.99 0.17 GCF_007786415.1 VNKN01 2346 2417 2417 10 2 58 1 Corynebacterium_gottingense_homd_HMT_207 GCA_007814275.1 HMT-076 16A Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri 16A 4 2770002 32.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/814/275/GCA_007814275.1_ASM781427v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA482667 1292 SAMN09714427 ASM781427v1 Complete Genome HGAP v. 1.4 2018-07-25T09:47:06.050 Brazil Buffalo milk PacBio Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal 546.0x 99.61 99.71 0.42 99.82 1.6 GCF_007814275.1 2833 2972 2972 57 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_007814385.1 HMT-567 26D Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae 26D 2 2691499 33.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/814/385/GCA_007814385.1_ASM781438v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA482667 29380 SAMN09714418 ASM781438v1 Complete Genome HGAP v. 1.4 2018-07-25T09:43:05.873 Brazil Buffalo milk PacBio Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal 427.0x 98.67 99.81 0.02 100 0.11 GCF_007814385.1 2563 2710 2710 67 19 60 1 Staphylococcus_caprae_homd_HMT_567 GCA_007814725.1 HMT-127 19A Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis 19A 3 2281220 31.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/814/725/GCA_007814725.1_ASM781472v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA482667 1290 SAMN09714578 ASM781472v1 Complete Genome HGAP v. 1.4 2018-07-25T10:38:07.336 Brazil Buffalo milk PacBio Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal 507.0x 99.15 99.38 1.14 99.97 0.03 GCF_007814725.1 2197 2357 2357 78 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_007814825.1 HMT-141 3C Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-141 Staphylococcus pasteuri 3C 2 2566689 31.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/814/825/GCA_007814825.1_ASM781482v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pasteuri PRJNA482667 45972 SAMN09714635 ASM781482v1 Complete Genome HGAP v. 1.4 2018-07-25T11:44:05.646 Brazil Milkers hand PacBio Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal 334.0x 99.49 99.17 0 99.99 0.19 GCF_007814825.1 2443 2586 2586 61 19 62 1 Staphylococcus_pasteuri_homd_HMT_141 GCA_007830595.1 HMT-743 ATCC 700334 Named Cultivated Oral (Abundance: Scarce) HMT-743 Treponema putidum ATCC 700334 40 2772337 37.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/830/595/GCA_007830595.1_ASM783059v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B putidum PRJNA257861 221027 SAMN02983005 ASM783059v1 Scaffold AllPaths v. r46652 2014-08-11T20:16:12.036 USA Illumina HiSeq DOE Joint Genome Institute 425.0x 99.97 100 0 99.99 0.27 GCF_007830595.1 VLLD01 2510 2572 2572 14 4 43 1 Treponema_putidum_homd_HMT_743 GCA_007830715.1 HMT-465 ATCC 33285 Named Cultivated Oral (Abundance: Scarce) HMT-465 Bacteroides zoogleoformans ATCC 33285 65 3258213 47.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/830/715/GCA_007830715.1_ASM783071v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides zoogleoformans PRJNA257869 28119 SAMN02983002 ASM783071v1 Scaffold AllPaths v. r46652 2014-08-11T20:13:21.520 USA: Virginia Illumina HiSeq DOE Joint Genome Institute 347.0x 99.99 98.33 0.37 99.99 0 GCF_007830715.1 VLLM01 2697 2772 2772 11 7 55 2 Bacteroides_zoogleoformans_homd_HMT_465 GCA_007833855.1 HMT-076 GD01 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri GD01 9 2544623 32.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/833/855/GCA_007833855.1_ASM783385v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA512551 1292 SAMN10687116 ASM783385v1 Complete Genome SOAPdenovo v. 2.4; Celera Assembler v. 8.0 2019-01-02T22:00:03.173 China: Guangdong muscle abscess tissue Illumina HiSeq; PacBio Foshan university 555.0x 99.65 99.73 0 100 0.05 GCF_007833855.1 2426 2508 0 0 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_007845135.1 HMT-364 TM7_HOT_351-SAG4 Phylotype Uncultivated Oral (Abundance: Scarce) HMT-364 Nanosyncoccus sp. HMT-364 TM7_HOT_351-SAG4 58 622110 41.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/845/135/GCA_007845135.1_ASM784513v1 Undefined PRJNA472398 713053 SAMN10782572 ASM784513v1 Contig SPAdes v. 3.9.0 2019-01-20T22:58:06.600 USA: Oak Ridge, TN saliva Illumina MiSeq Oak Ridge National Laboratory 100.0x GCF_007845135.1 SDRG01 577 614 614 0 3 34 0 Nanosyncoccus_sp_HMT_364_homd_HMT_364 GCA_007845165.1 HMT-351 TM7_HOT_351-SAG3 Phylotype Uncultivated Oral (Abundance: High) HMT-351 Nanosyncoccus sp. HMT-351 TM7_HOT_351-SAG3 53 620127 41.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/845/165/GCA_007845165.1_ASM784516v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp007845165 PRJNA472398 713053 SAMN10782571 ASM784516v1 Contig SPAdes v. 3.9.0 2019-01-20T22:58:06.583 USA: Oak Ridge, TN saliva Illumina MiSeq Oak Ridge National Laboratory 100.0x 66.85 0 83.2 0.22 GCF_007845165.1 SDRH01 573 0 0 2 3 37 0 Nanosyncoccus_sp_HMT_351_homd_HMT_351 GCA_007845205.1 HMT-350 TM7_HOT_350-SAG1 Phylotype Uncultivated Oral (Abundance: Medium) HMT-350 Saccharimonadales [F1 G1] bacterium HMT-350 TM7_HOT_350-SAG1 38 523632 34.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/845/205/GCA_007845205.1_ASM784520v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__SDRK01;g__SDRK01;s__SDRK01 sp007845205 PRJNA472398 713052 SAMN10782568 ASM784520v1 Scaffold SPAdes v. 3.9.0 2019-01-20T22:58:06.533 USA: Columbus, OH subgingival fluid Illumina HiSeq Oak Ridge National Laboratory 100.0x 54.14 0 67.29 0.44 GCF_007845205.1 SDRK01 493 529 529 2 3 31 0 GCA_007845255.1 HMT-353 TM7_HOT_353-SAG1 Unnamed Cultivated Oral (Abundance: Low) HMT-353 Nanosynbacter sp. HMT-353 TM7_HOT_353-SAG1 65 628606 46.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/845/255/GCA_007845255.1_ASM784525v1 Undefined PRJNA472398 713055 SAMN10782567 ASM784525v1 Scaffold SPAdes v. 3.9.0 2019-01-20T22:58:06.520 USA: Oak Ridge, TN saliva Illumina HiSeq Oak Ridge National Laboratory 100.0x GCF_007845255.1 SDRL01 661 692 692 4 3 24 0 GCA_007845265.1 HMT-352 TM7_HOT_352-SAG8 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7_HOT_352-SAG8 28 703325 43.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/845/265/GCA_007845265.1_ASM784526v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp007845355 PRJNA472398 713054 SAMN10782566 ASM784526v1 Contig SPAdes v. 3.9.0 2019-01-20T22:58:06.503 USA: Oak Ridge, TN saliva Illumina MiSeq Oak Ridge National Laboratory 100.0x 64.1 0.85 97.25 0.49 GCF_007845265.1 SDRM01 703 750 750 5 3 39 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_007845455.1 HMT-349 TM7_HOT_349-SAG1 Phylotype Uncultivated Oral (Abundance: Medium) HMT-349 Saccharimonas sp. HMT-349 TM7_HOT_349-SAG1 145 993263 47.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/845/455/GCA_007845455.1_ASM784545v1 Undefined PRJNA472398 713051 SAMN10782558 ASM784545v1 Scaffold SPAdes v. 3.9.0 2019-01-20T22:58:06.370 USA: Columbus, OH subgingival fluid Illumina HiSeq Oak Ridge National Laboratory 100.0x GCF_007845455.1 SDRT01 976 1009 1009 3 0 30 0 Saccharimonas_sp_HMT_349_homd_HMT_349 GCA_007845545.1 HMT-346 TM7_HOT_346-SAG2 Phylotype Uncultivated Oral (Abundance: High) HMT-346 Saccharimonas sp. HMT-346 TM7_HOT_346-SAG2 22 978051 47.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/845/545/GCA_007845545.1_ASM784554v1 Undefined PRJNA472398 713049 SAMN10782552 ASM784554v1 Scaffold SPAdes v. 3.9.0 2019-01-20T22:58:06.270 USA: Columbus, OH subgingival fluid Illumina HiSeq Oak Ridge National Laboratory 100.0x GCF_007845545.1 SDRZ01 956 1012 1012 5 3 48 0 Saccharimonas_sp_HMT_346_homd_HMT_346 GCA_007858165.1 HMT-612 DSM 50090 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-612 Pseudomonas fluorescens DSM 50090 31 6374365 60.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/858/165/GCA_007858165.1_ASM785816v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E fluorescens PRJNA548434 294 SAMN12027180 ASM785816v1 Contig SPAdes v. 2.5.1 2019-06-12T04:26:09.970 United Kingdom pre-filter tanks Illumina MiSeq Technische Universitaet Muenchen 100.0x 99.99 99.86 0.52 100 0.02 GCF_007858165.1 VFEP01 5767 5941 5941 107 7 59 1 Pseudomonas_fluorescens_homd_HMT_612 GCA_007989125.1 HMT-716 NBRC 15889 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-716 Lacticaseibacillus paracasei NBRC 15889 130 2872191 46.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/989/125/GCA_007989125.1_ASM798912v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei PRJDB6070 47714 SAMD00166241 ASM798912v1 Contig newbler v. 3.0 2019-04-04T01:00:42.436 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 85.0x 99.99 99.46 0 99.98 0.28 GCF_007989125.1 BJVL01 2766 2851 2851 32 2 50 1 Lacticaseibacillus_paracasei_homd_HMT_716 GCA_007989145.1 HMT-861 NBRC 15891 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-861 Lactiplantibacillus plantarum NBRC 15891 60 3191823 44.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/989/145/GCA_007989145.1_ASM798914v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum PRJDB6072 337330 SAMD00166242 ASM798914v1 Contig newbler v. 3.0 2019-04-04T01:00:43.186 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 115.0x 99.99 99.07 2.78 100 0.54 GCF_007989145.1 BJVM01 2997 3033 0 0 2 33 1 Lactiplantibacillus_plantarum_homd_HMT_861 GCA_007990385.1 HMT-222 JMUB3933 Named Cultivated Oral (Abundance: Medium) HMT-222 Leptotrichia wadei JMUB3933 1 2361227 29.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/385/GCA_007990385.1_ASM799038v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei PRJDB7856 157687 SAMD00156218 ASM799038v1 Complete Genome Canu v. 1.8; Circlator v. 1.5.5; nanopolish v. 0.10.2; Pilon v. 1.22; CLC Genomics Workbench v. 9.5. 2018-12-27T01:00:55.410 Japan MinION; MiSeq Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 91.0x 97.04 100 2.84 100 0.6 GCF_007990385.1 2171 2249 2249 17 15 45 1 Leptotrichia_wadei_homd_HMT_222 GCA_007990405.1 HMT-222 JMUB3934 Named Cultivated Oral (Abundance: Medium) HMT-222 Leptotrichia wadei JMUB3934 5 2490107 29.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/405/GCA_007990405.1_ASM799040v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei PRJDB7856 157687 SAMD00156219 ASM799040v1 Complete Genome Canu v. 1.8; Circlator v. 1.5.5; nanopolish v. 0.10.2; Pilon v. 1.22; CLC Genomics Workbench v. 9.5. 2018-12-27T01:00:55.427 Japan MinION; MiSeq Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 77.0x 97.12 100 2.84 100 0.49 GCF_007990405.1 2289 2365 2365 14 15 46 1 Leptotrichia_wadei_homd_HMT_222 GCA_007990445.1 HMT-417 JMUB3936 Unnamed Cultivated Oral (Abundance: High) HMT-417 Leptotrichia sp. HMT-417 JMUB3936 4 2404956 30.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/445/GCA_007990445.1_ASM799044v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei_A PRJDB7856 157687 SAMD00156221 ASM799044v1 Complete Genome Canu v. 1.8; Circlator v. 1.5.5; nanopolish v. 0.10.2; Pilon v. 1.22; CLC Genomics Workbench v. 9.5. 2018-12-27T01:00:55.463 Japan MinION; MiSeq Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 54.0x 92.62 100 1.3 100 0.3 GCF_007990445.1 2285 2378 2378 32 15 45 1 Leptotrichia_sp_HMT_417_homd_HMT_417 GCA_007990505.1 HMT-845 JCM16774 Named Cultivated Oral (Abundance: Medium) HMT-845 Pseudoleptotrichia goodfellowii JCM16774 1 2290729 31.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/505/GCA_007990505.1_ASM799050v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Pseudoleptotrichia;s__Pseudoleptotrichia goodfellowii PRJDB7856 157692 SAMD00156222 ASM799050v1 Complete Genome Canu v. 1.8; Circlator v. 1.5.5; nanopolish v. 0.10.2; Pilon v. 1.22; CLC Genomics Workbench v. 9.5. 2018-12-27T01:00:55.480 Germany MinION; MiSeq Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 67.0x 99.98 100 1.14 99.97 0.52 GCF_007990505.1 2209 2288 2288 22 12 44 1 Pseudoleptotrichia_goodfellowii_homd_HMT_845 GCA_007990525.1 HMT-224 JCM16775 Named Cultivated Oral (Abundance: Medium) HMT-224 Leptotrichia hofstadii JCM16775 4 2604381 30.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/525/GCA_007990525.1_ASM799052v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia hofstadii PRJDB7856 157688 SAMD00156223 ASM799052v1 Complete Genome Canu v. 1.8; Circlator v. 1.5.5; nanopolish v. 0.10.2; Pilon v. 1.22; CLC Genomics Workbench v. 9.5. 2018-12-27T01:00:55.500 Norway MinION; MiSeq Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 47.0x 99.99 100 2.27 99.99 0.64 GCF_007990525.1 2462 2547 2547 22 15 47 1 Leptotrichia_hofstadii_homd_HMT_224 GCA_007990545.2 HMT-222 JCM16777 Named Cultivated Oral (Abundance: Medium) HMT-222 Leptotrichia wadei JCM16777 2 2337418 29.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/545/GCA_007990545.2_ASM799054v2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei PRJDB7856 157687 SAMD00156224 ASM799054v2 Complete Genome Canu v. 1.8; Circlator v. 1.5.5; nanopolish v. 0.10.2; Pilon v. 1.22; CLC Genomics Workbench v. 9.5. 2018-12-27T01:00:55.520 Norway MinION; MiSeq Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 63.0x 99.99 100 2.27 100 0.31 GCF_007990545.2 2107 2185 2185 16 15 46 1 Leptotrichia_wadei_homd_HMT_222 GCA_007990635.1 HMT-213 JMUB5056 Named Cultivated Oral (Abundance: Medium) HMT-213 Leptotrichia hongkongensis JMUB5056 2 2284180 29.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/635/GCA_007990635.1_ASM799063v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia hongkongensis PRJDB7856 554406 SAMD00174169 ASM799063v1 Complete Genome Canu v. 1.8; Circlator v. 1.5.5; Pilon v. 1.22; CLC Genomics Workbench v. 9.5.3 2019-06-11T01:00:36.123 Japan MinION; MiSeq Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 67.0x 96.37 100 1.14 99.68 0.18 GCF_007990635.1 2196 2271 2271 13 15 46 1 Leptotrichia_hongkongensis_homd_HMT_213 GCA_007990855.1 HMT-749 NBRC 3425 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-749 Lacticaseibacillus rhamnosus NBRC 3425 190 2909187 46.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/855/GCA_007990855.1_ASM799085v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus PRJDB423 1423797 SAMD00169722 ASM799085v1 Contig newbler v. 3.0 2019-04-26T01:00:49.593 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 199.0x 99.97 99.46 0 99.92 0.05 GCF_007990855.1 BJXF01 2689 2766 2766 28 2 46 1 Lacticaseibacillus_rhamnosus_homd_HMT_749 GCA_007991595.1 HMT-578 NBRC 106105 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus NBRC 106105 177 2092623 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/991/595/GCA_007991595.1_ASM799159v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_B PRJDB6233 45634 SAMD00170760 ASM799159v1 Contig newbler v. 3.0 2019-05-08T01:01:03.113 China:Beijing Illumina HiSeq 1000 National Institute of Technology and Evaluation Biological Resource Center 116.0x 99.97 99.63 0 99.99 0.04 GCF_007991595.1 BJYQ01 2060 2128 2128 35 3 29 1 Streptococcus_cristatus_homd_HMT_578 GCA_007991655.1 HMT-261 NBRC 106135 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-261 Segetibacter aerophilus NBRC 106135 79 5893322 40.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/991/655/GCA_007991655.1_ASM799165v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Segetibacter;s__Segetibacter aerophilus PRJDB6236 670293 SAMD00171866 ASM799165v1 Contig newbler v. 3.0 2019-05-16T01:00:55.453 South Korea:Suwon Illumina HiSeq 1000 National Institute of Technology and Evaluation Biological Resource Center 100.0x 99.01 1.97 100 0.03 GCF_007991655.1 BJYT01 5044 5096 5096 7 3 41 1 GCA_007991835.1 HMT-883 NBRC 106467 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-883 Lactiplantibacillus pentosus NBRC 106467 213 3541994 46.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/991/835/GCA_007991835.1_ASM799183v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus PRJDB6251 1589 SAMD00171877 ASM799183v1 Contig newbler v. 3.0 2019-05-16T01:01:02.466 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation Biological Resource Center 155.0x 99.99 99.38 2.16 100 0.76 GCF_007991835.1 BJZC01 3266 3349 3349 43 2 37 1 Lactiplantibacillus_pentosus_homd_HMT_883 GCA_007991855.1 HMT-861 NBRC 106468 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-861 Lactiplantibacillus plantarum NBRC 106468 165 3128971 45.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/991/855/GCA_007991855.1_ASM799185v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum PRJDB6252 271881 SAMD00171878 ASM799185v1 Contig newbler v. 3.0 2019-05-16T01:01:03.246 Nigeria Illumina HiSeq 1000 National Institute of Technology and Evaluation Biological Resource Center 115.0x 99.99 99.38 2.78 100 0.45 GCF_007991855.1 BJZD01 2907 2952 0 0 2 42 1 Lactiplantibacillus_plantarum_homd_HMT_861 GCA_007992555.1 HMT-884 NBRC 109618 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-884 Lentilactobacillus rapi NBRC 109618 166 2833656 42.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/992/555/GCA_007992555.1_ASM799255v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus rapi PRJDB6327 481723 SAMD00172676 ASM799255v1 Contig newbler v. 3.0 2019-05-24T01:01:12.010 Japan:Nagano, Kiso Illumina HiSeq 1000 National Institute of Technology and Evaluation Biological Resource Center 199.0x 99.99 98.94 0.21 99.84 0.38 GCF_007992555.1 BKAM01 2620 2707 2707 44 2 40 1 Lentilactobacillus_rapi_homd_HMT_884 GCA_007992675.1 HMT-117 NBRC 109713 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-117 Staphylococcus cohnii NBRC 109713 67 2563846 32.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/992/675/GCA_007992675.1_ASM799267v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus cohnii PRJDB1638 74704 SAMD00172682 ASM799267v1 Contig newbler v. 3.0 2019-05-24T01:01:16.776 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation 96.0x 99.96 98.9 0 99.99 0.17 GCF_007992675.1 BKAS01 2508 2589 2589 51 2 27 1 Staphylococcus_cohnii_homd_HMT_117 GCA_007992795.1 HMT-120 NBRC 109768 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus NBRC 109768 60 2399880 32.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/992/795/GCA_007992795.1_ASM799279v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJDB6341 1283 SAMD00172688 ASM799279v1 Contig newbler v. 3.0 2019-05-24T01:01:20.410 missing Illumina HiSeq 1000 National Institute of Technology and Evaluation Biological Resource Center 102.0x 99.96 99.39 0 99.99 0.01 GCF_007992795.1 BKAY01 2321 2433 2433 70 2 39 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_008000975.1 HMT-963 DSM 22959 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-963 Akkermansia muciniphila DSM 22959 1 2664043 55.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/000/975/GCA_008000975.1_ASM800097v1 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila PRJNA559704 239935 SAMN12556229 ASM800097v1 Complete Genome HGAP v. 3 2019-08-11T09:42:03.510 Netherlands feces PacBio Nanjing Agricultural university 120.0x 99.99 97.96 0 100 0.25 GCF_008000975.1 2184 2254 2254 6 9 54 1 Akkermansia_muciniphila_homd_HMT_963 GCA_008042215.1 HMT-072 LK14 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum LK14 36 2714795 59.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/042/215/GCA_008042215.1_ASM804221v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA395377 2022659 SAMN07376277 ASM804221v1 Contig SPAdes v. 3.10.1 2017-07-21T15:00:03.760 USA diabetic foot ulcer sample 4 Illumina NextSeq 500 UPenn 100.0x 99.67 0.23 99.99 0.07 GCF_008042215.1 NOVQ01 2502 2571 2571 8 4 56 1 Corynebacterium_striatum_homd_HMT_072 GCA_008084095.1 HMT-531 PN_773 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_773 29 2038882 44.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/084/095/GCA_008084095.1_ASM808409v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492029 ASM808409v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.193 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 98.5x 99.85 99.89 0 100 0 GCF_008084095.1 VSEV01 1954 2062 2062 57 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008084115.1 HMT-531 PN_687 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_687 28 2078207 44.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/084/115/GCA_008084115.1_ASM808411v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492039 ASM808411v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.353 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 96.5x 99.1 99.89 0.08 100 0.03 GCF_008084115.1 VSEN01 1989 2098 2098 58 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008084195.1 HMT-531 PN_738 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_738 27 2134503 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/084/195/GCA_008084195.1_ASM808419v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492040 ASM808419v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.370 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 95.0x 99.1 99.89 0.08 100 0.02 GCF_008084195.1 VSES01 2059 2169 2169 58 4 47 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008084225.1 HMT-531 PN_708 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_708 25 2109962 44.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/084/225/GCA_008084225.1_ASM808422v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492027 ASM808422v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.160 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 98.5x 99.84 99.89 0.08 100 0 GCF_008084225.1 VSEQ01 2035 2143 2143 57 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085015.1 HMT-531 PN_561 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_561 2 2237318 44.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/015/GCA_008085015.1_ASM808501v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans_A PRJNA560478 714 SAMN12492054 ASM808501v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.603 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 81.0x 93.89 99.89 0 100 0 GCF_008085015.1 VSEC01 2134 2284 2284 76 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085085.1 HMT-531 PN_435 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_435 28 2120456 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/085/GCA_008085085.1_ASM808508v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492031 ASM808508v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.226 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 97.0x 99.11 99.89 0.08 100 0.02 GCF_008085085.1 VSDW01 2048 2161 2161 61 4 47 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085135.1 HMT-531 PN_438 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_438 26 2062693 44.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/135/GCA_008085135.1_ASM808513v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492033 ASM808513v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.260 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 97.5x 99.1 99.89 0.08 100 0.02 GCF_008085135.1 VSDZ01 1980 2087 2087 57 4 45 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085215.1 HMT-531 PN_436 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_436 26 2079715 44.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/215/GCA_008085215.1_ASM808521v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492032 ASM808521v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.240 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 98.0x 99.11 99.66 0.08 100 0.03 GCF_008085215.1 VSDX01 1996 2106 2106 59 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085265.1 HMT-531 PN_694 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_694 25 2039051 44.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/265/GCA_008085265.1_ASM808526v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492026 ASM808526v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.143 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 99.0x 99.6 99.89 0 100 0 GCF_008085265.1 VSEP01 1936 2042 2042 56 3 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085295.1 HMT-531 PN_686 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_686 27 2036242 44.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/295/GCA_008085295.1_ASM808529v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492025 ASM808529v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.126 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 98.0x 99.92 99.89 0 100 0 GCF_008085295.1 VSEM01 1941 2046 2046 54 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085305.1 HMT-531 NCTC_9710 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans NCTC_9710 41 2069548 44.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/305/GCA_008085305.1_ASM808530v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492020 ASM808530v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:03.976 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 98.0x 99.99 99.77 0 100 0 GCF_008085305.1 VSDU01 1999 2106 2106 56 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085315.1 HMT-531 PN_728 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_728 24 2046220 44.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/315/GCA_008085315.1_ASM808531v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492028 ASM808531v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.176 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 98.5x 99.84 99.89 0 100 0 GCF_008085315.1 VSER01 1966 2074 2074 57 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085365.1 HMT-531 PN_628 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_628 27 2030108 44.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/365/GCA_008085365.1_ASM808536v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492024 ASM808536v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.110 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 98.0x 99.85 99.89 0 100 0 GCF_008085365.1 VSEI01 1953 2061 2061 57 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085405.1 HMT-531 PN_566 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_566 27 2041829 44.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/405/GCA_008085405.1_ASM808540v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492023 ASM808540v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.093 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 99.0x 99.84 99.89 0 100 0 GCF_008085405.1 VSEF01 1960 2068 2068 57 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008085415.1 HMT-531 PN_565 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_565 26 2043562 44.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/415/GCA_008085415.1_ASM808541v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492022 ASM808541v1 Contig SPAdes v. 3.13.0 2019-08-03T16:18:04.080 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 99.0x 99.84 99.89 0 100 0 GCF_008085415.1 VSEE01 1965 2074 2074 57 5 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008086365.1 HMT-531 HK_907 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HK_907 1 2316234 44.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/086/365/GCA_008086365.1_ASM808636v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492049 ASM808636v1 Complete Genome SPAdes v. 3.13.0 2019-08-03T16:18:04.513 Netherlands Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 86.0x 97.48 99.89 0.45 100 0.05 GCF_008086365.1 2301 2435 2435 67 17 49 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008086385.1 HMT-531 HK_973 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HK_973 1 2298901 44.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/086/385/GCA_008086385.1_ASM808638v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492050 ASM808638v1 Complete Genome SPAdes v. 3.13.0 2019-08-03T16:18:04.533 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 88.0x 97.46 99.55 0.23 100 0.04 GCF_008086385.1 2299 2440 2440 69 17 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008086405.1 HMT-531 PN_696 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PN_696 1 2284248 44.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/086/405/GCA_008086405.1_ASM808640v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA560478 714 SAMN12492048 ASM808640v1 Complete Genome SPAdes v. 3.13.0 2019-08-03T16:18:04.500 Denmark Bacteremia Illumina Department of Molecular Medicine (MOMA) - Aarhus University Hospital 88.0x 97.49 99.66 0.23 100 0.02 GCF_008086405.1 2253 2390 2390 66 17 53 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_008121405.1 HMT-787 KG-29 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-787 Bacteroides pyogenes KG-29 115 3371970 45.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/121/405/GCA_008121405.1_ASM812140v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes PRJNA553588 310300 SAMN12240205 ASM812140v1 Contig SPAdes v. 3.11.1 2019-07-09T21:13:03.787 USA: Florida Illumina MiSeq University of Florida 86.5x 98.91 99.25 0.94 99.99 0 GCF_008121405.1 VKLY01 2787 2891 2891 36 7 60 1 Bacteroides_pyogenes_homd_HMT_787 GCA_008180045.1 HMT-853 VH4549 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-853 Corynebacterium urealyticum VH4549 4 2402972 64.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/180/045/GCA_008180045.1_ASM818004v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium urealyticum PRJNA561598 43771 SAMN12621707 ASM818004v1 Scaffold SPAdes v. 3.10.0 2019-08-22T15:27:03.940 Spain: Santander Illumina HiSeq Federal University of Bahia 2863.0x 97.55 100 0 100 0.37 GCF_008180045.1 VSZJ01 2070 2135 2135 8 3 53 1 Corynebacterium_urealyticum_homd_HMT_853 GCA_008180065.1 HMT-853 VH5913 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-853 Corynebacterium urealyticum VH5913 5 2315346 64.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/180/065/GCA_008180065.1_ASM818006v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium urealyticum PRJNA561598 43771 SAMN12621849 ASM818006v1 Scaffold SPAdes v. 3.10.0 2019-08-22T15:35:04.525 Spain: Santander Illumina HiSeq Federal University of Bahia 2626.0x 97.49 100 0 99.99 0.19 GCF_008180065.1 VSZK01 1997 2061 2061 8 3 52 1 Corynebacterium_urealyticum_homd_HMT_853 GCA_008180305.1 HMT-297 Acsw19 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-297 Acinetobacter johnsonii Acsw19 4 3835186 41.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/180/305/GCA_008180305.1_ASM818030v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter johnsonii PRJNA561898 40214 SAMN12630603 ASM818030v1 Complete Genome SOAPdenovo v. 2.3 2019-08-24T01:44:04.620 China: Luzhou sewage PacBio RSII; Illumina HiSeq SOUTHWEST MEDICAL UNIVERSITY 200.0x 95.92 100 0.99 100 0.47 GCF_008180305.1 3624 3749 3749 15 21 88 1 Acinetobacter_johnsonii_homd_HMT_297 GCA_008244525.1 HMT-853 VH3073 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-853 Corynebacterium urealyticum VH3073 9 2303392 64.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/244/525/GCA_008244525.1_ASM824452v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium urealyticum PRJNA561598 43771 SAMN12621417 ASM824452v1 Scaffold SPAdes v. 3.10.0 2019-08-22T14:52:03.965 Spain: Santander Illumina HiSeq Federal University of Bahia 1827.0x 97.22 100 0 100 0.23 GCF_008244525.1 VTFJ01 1941 2006 2006 8 4 52 1 Corynebacterium_urealyticum_homd_HMT_853 GCA_008245005.1 HMT-776 LMG 7795 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-776 Campylobacter sputorum LMG 7795 1 1753386 29.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/245/005/GCA_008245005.1_ASM824500v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F;s__Campylobacter_F sputorum PRJNA562224 32024 SAMN12636417 ASM824500v1 Complete Genome RS_HGAP_Assembly v. 3; Newbler v. 2.6 2019-08-26T11:36:05.113 Brazil Human oral cavity PacBio; Illumina MiSeq USDA, ARS, WRRC 280.0x 99.98 99.14 0.18 99.99 0 GCF_008245005.1 1760 1819 1819 5 6 47 1 Campylobacter_sputorum_homd_HMT_776 GCA_008274805.1 HMT-028 TPP412 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-028 Oryzomicrobium terrae TPP412 1 3526415 66.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/274/805/GCA_008274805.1_ASM827480v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Oryzomicrobium;s__Oryzomicrobium terrae PRJNA384495 1735038 SAMN06840935 ASM827480v1 Complete Genome SPAdes v. 3.10.1 2017-04-27T03:14:16.280 Taiwan: Agricultural Experimen PacBio; Illumina MiSeq Academia Sinica 861.2x 99.53 0.47 100 0.13 GCF_008274805.1 3115 3198 3198 14 9 59 1 Oryzomicrobium_terrae_homd_HMT_028 GCA_008305695.1 HMT-755 LAB813 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius LAB813 2 2426257 39.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/305/695/GCA_008305695.1_ASM830569v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA546007 1304 SAMN11947030 ASM830569v1 Complete Genome HGAP v. October-2017 2019-06-03T17:06:06.596 Canada: Faculty of Dentistry, PacBio RSII University of Toronto 246.0x 95.92 99.94 2.73 99.98 1.31 GCF_008305695.1 2218 2361 2361 45 23 74 1 Streptococcus_salivarius_homd_HMT_755 GCA_008326345.1 HMT-193 M12 Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum M12 9 2626218 59.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/326/345/GCA_008326345.1_ASM832634v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJDB8067 2559073 SAMD00164391 ASM832634v1 Contig SPAdes v. 3.11.1 2019-08-20T01:00:31.373 Japan:Kyoto Illumina MiSeq RIKEN BioResource Research Center 99.95 100 0 100 0.39 GCF_008326345.1 BJEN01 2566 2640 2640 24 3 46 1 Cutibacterium_modestum_homd_HMT_193 GCA_008327825.1 HMT-214 JCM16776 Named Cultivated Oral (Abundance: Scarce) HMT-214 Leptotrichia shahii JCM16776 2 2161166 29.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/327/825/GCA_008327825.1_ASM832782v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia shahii PRJDB7856 157691 SAMD00174168 ASM832782v1 Complete Genome Canu v. 1.8; Circlator v. 1.5.5; nanopolish v. 0.10.2; Pilon v. 1.22; CLC Genomics Workbench v. 9.5. 2019-06-11T01:00:36.096 USA MinION; MiSeq Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University 67.0x 99.98 100 1.14 99.96 0.3 GCF_008327825.1 1968 2061 2061 32 15 45 1 Leptotrichia_shahii_homd_HMT_214 GCA_008329445.1 HMT-758 S28 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis S28 10 2367753 43.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/329/445/GCA_008329445.1_ASM832944v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_O PRJNA551103 1305 SAMN12139124 ASM832944v1 Contig SOAPdenovo v. 2.04 2019-06-26T05:21:07.753 China: Hangzhou throat swab of children with scarlet fever PacBio Sequel Hangzhou center for disease control and prevention 150.0x 95.33 100 0.19 100 0.07 GCF_008329445.1 VIBR01 2287 2362 2362 31 3 40 1 Streptococcus_sanguinis_homd_HMT_758 GCA_008329765.1 HMT-669 12-221 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 12-221 1 2167947 51.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/329/765/GCA_008329765.1_ASM832976v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA386981 487 SAMN07137413 ASM832976v1 Complete Genome Celera Assembler v. HGAP v3 2017-05-17T10:33:03.483 Sweden missing PacBio Orebro University Hospital 144.0x 97.45 99.56 0.19 99.98 0 GCF_008329765.1 2008 2111 2111 32 12 58 1 Neisseria_meningitidis_homd_HMT_669 GCA_008330025.1 HMT-945 NEB129 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus NEB129 2 2091866 40.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/330/025/GCA_008330025.1_ASM833002v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus PRJNA530980 735 SAMN11345835 ASM833002v1 Complete Genome HGAP v. 2.3.0 2019-04-04T14:24:05.950 USA missing PacBio RS NEB 520.0x 99.99 99.43 0.3 100 0.01 GCF_008330025.1 1958 2063 2063 26 18 60 1 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_008330745.1 HMT-669 14-563 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 14-563 1 2166707 51.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/330/745/GCA_008330745.1_ASM833074v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA386981 487 SAMN07137416 ASM833074v1 Complete Genome Celera Assembler v. HGAP v3 2017-05-17T10:33:03.527 Sweden missing PacBio Orebro University Hospital 197.0x 97.45 99.75 0.19 99.99 0 GCF_008330745.1 1997 2100 2100 32 12 58 1 Neisseria_meningitidis_homd_HMT_669 GCA_008330765.1 HMT-669 12-176 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 12-176 1 2168615 51.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/330/765/GCA_008330765.1_ASM833076v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA386981 487 SAMN07137412 ASM833076v1 Complete Genome Celera Assembler v. HGAP v3 2017-05-17T10:33:03.470 Sweden missing PacBio Orebro University Hospital 186.0x 97.46 99.75 0.19 99.99 0 GCF_008330765.1 1986 2089 2089 32 12 58 1 Neisseria_meningitidis_homd_HMT_669 GCA_008330785.1 HMT-669 11-14 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 11-14 1 2156539 51.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/330/785/GCA_008330785.1_ASM833078v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA386981 487 SAMN07137411 ASM833078v1 Complete Genome Celera Assembler v. HGAP v3 2017-05-17T10:33:03.450 Sweden missing PacBio Orebro University Hospital 132.0x 97.46 99.75 0.19 99.99 0 GCF_008330785.1 1985 2088 2088 32 12 58 1 Neisseria_meningitidis_homd_HMT_669 GCA_008330805.1 HMT-669 11-7 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 11-7 1 2157444 51.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/330/805/GCA_008330805.1_ASM833080v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA386981 487 SAMN07137410 ASM833080v1 Complete Genome Celera Assembler v. HGAP v3 2017-05-17T10:33:03.427 Sweden missing PacBio Orebro University Hospital 151.0x 97.48 99.75 0.19 99.99 0 GCF_008330805.1 1971 2078 2078 35 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_008330865.1 HMT-669 98-182 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 98-182 1 2167995 51.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/330/865/GCA_008330865.1_ASM833086v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA386981 487 SAMN07137407 ASM833086v1 Complete Genome Celera Assembler v. HGAP v3 2017-05-17T10:33:03.380 Sweden missing PacBio Orebro University Hospital 108.0x 97.48 99.75 0.19 99.99 0 GCF_008330865.1 1982 2089 2089 35 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_008330885.1 HMT-669 95-134 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 95-134 1 2165984 51.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/330/885/GCA_008330885.1_ASM833088v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA386981 487 SAMN07137406 ASM833088v1 Complete Genome Celera Assembler v. HGAP v3 2017-05-17T10:33:03.360 Sweden missing PacBio Orebro University Hospital 116.0x 97.46 99.56 0.19 99.99 0 GCF_008330885.1 1977 2084 2084 35 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_008330905.1 HMT-669 12-330 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 12-330 1 2169717 51.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/330/905/GCA_008330905.1_ASM833090v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA386981 487 SAMN07137414 ASM833090v1 Complete Genome Celera Assembler v. HGAP v3 2017-05-17T10:33:03.497 Sweden missing PacBio Orebro University Hospital 198.0x 97.47 99.75 0.19 99.99 0 GCF_008330905.1 1988 2090 2090 31 12 58 1 Neisseria_meningitidis_homd_HMT_669 GCA_008368695.1 HMT-047 ICIS 5 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum ICIS 5 115 2474151 58.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/368/695/GCA_008368695.1_ASM836869v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA339674 43765 SAMN11391704 ASM836869v1 Contig SPAdes v. 3.13.0 OR OCT-2018 2019-04-10T14:24:04.217 Russia female urogenital tract Illumina MiSeq Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences 278.0x 94.86 99.4 0 100 0.04 GCF_008368695.1 SSOR01 2107 2200 2200 14 24 54 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_008369405.1 HMT-578 S22 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus S22 30 2041836 42.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/369/405/GCA_008369405.1_ASM836940v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_G PRJNA561044 45634 SAMN12606070 ASM836940v1 Contig SOAPdenovo v. 2.04 2019-08-20T03:31:05.020 China: Hangzhou, Zhejiang throat swab PacBio Sequel Hangzhou center for disease control and prevention 150.0x 94.26 100 0 99.99 0.11 GCF_008369405.1 VSJJ01 1979 2081 2081 59 3 39 1 Streptococcus_cristatus_homd_HMT_578 GCA_008369805.1 HMT-881 MGB0786 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-881 Lentilactobacillus buchneri MGB0786 4 2583542 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/369/805/GCA_008369805.1_ASM836980v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri PRJNA563745 1581 SAMN12687753 ASM836980v1 Complete Genome HGAP v. 4 2019-09-03T21:22:03.266 South Korea kimchi PacBio RSII Kyungpook National University 242.0x 99.74 99.06 1.25 100 1.84 GCF_008369805.1 2510 2628 2628 39 13 65 1 Lentilactobacillus_buchneri_homd_HMT_881 GCA_008373895.1 HMT-072 LK37 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum LK37 100 2824107 59.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/373/895/GCA_008373895.1_ASM837389v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA506988 43770 SAMN10134347 ASM837389v1 Contig SPAdes v. 3.10.1 2018-09-26T16:38:05.070 USA foot ulcer Illumina NextSeq 500 University of Pennsylvania 2500.0x 98.72 99.67 0.22 99.99 0.07 GCF_008373895.1 RAQW01 2604 2673 2673 9 4 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_008586745.1 HMT-535 HE7/F1946 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius HE7/F1946 1 1985844 38.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/586/745/GCA_008586745.1_ASM858674v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA563784 725 SAMN12687934 ASM858674v1 Complete Genome HGAP v. 4 2019-09-04T02:53:05.567 Brazil: Promissao Skin (Petechiae) PacBio Sequel Griffith University 128.4x 96.93 99.67 0 100 0.43 GCF_008586745.1 1942 2061 2061 41 19 58 1 Haemophilus_aegyptius_homd_HMT_535 GCA_008586765.1 HMT-535 HE40/F3043 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius HE40/F3043 1 2000194 38.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/586/765/GCA_008586765.1_ASM858676v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA563784 725 SAMN12687938 ASM858676v1 Complete Genome HGAP v. 4 2019-09-04T02:53:05.647 Brazil: Guariba Conjunctiva PacBio Sequel Griffith University 118.3x 96.95 95.4 0.01 92.47 0.81 GCF_008586765.1 2298 2418 2418 43 19 57 1 Haemophilus_aegyptius_homd_HMT_535 GCA_008586785.1 HMT-535 HE37/F3052 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius HE37/F3052 1 1877864 38.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/586/785/GCA_008586785.1_ASM858678v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA563784 725 SAMN12687937 ASM858678v1 Complete Genome HGAP v. 4 2019-09-04T02:53:05.630 Brazil: So Paulo Conjunctiva PacBio Sequel Griffith University 138.2x 96.94 95.25 0.44 91.45 0.92 GCF_008586785.1 1991 2097 2097 33 17 55 1 Haemophilus_aegyptius_homd_HMT_535 GCA_008586805.1 HMT-535 HE24/F3037 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius HE24/F3037 1 1987687 38.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/586/805/GCA_008586805.1_ASM858680v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA563784 725 SAMN12687936 ASM858680v1 Complete Genome HGAP v. 4 2019-09-04T02:53:05.610 Brazil: Guatapar blood PacBio Sequel Griffith University 161.9x 96.95 99.67 0 100 0.43 GCF_008586805.1 1957 2076 2076 41 19 58 1 Haemophilus_aegyptius_homd_HMT_535 GCA_008586825.1 HMT-535 HE15/F3028 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius HE15/F3028 1 1984979 38.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/586/825/GCA_008586825.1_ASM858682v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA563784 725 SAMN12687935 ASM858682v1 Complete Genome HGAP v. 4 2019-09-04T02:53:05.590 Brazil: Fartura CSF PacBio Sequel Griffith University 245.6x 96.94 99.67 0 100 0.43 GCF_008586825.1 1940 2059 2059 41 19 58 1 Haemophilus_aegyptius_homd_HMT_535 GCA_008619795.1 HMT-550 KUH140331 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus KUH140331 2 2754388 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/619/795/GCA_008619795.1_ASM861979v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJDB8599 1280 SAMD00180474 ASM861979v1 Complete Genome Unicycler v. 0.4.7b 2019-08-06T18:14:57.377 Japan:Kyoto Illumina, Nanopore Department of Microbiology, Graduate School of Medicine, Kyoto University 283.0x 98.81 99.51 0.1 100 0.13 GCF_008619795.1 2516 2709 2709 112 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_008620055.1 HMT-550 KUH180062 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus KUH180062 2 2969682 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/620/055/GCA_008620055.1_ASM862005v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJDB8599 1280 SAMD00180476 ASM862005v1 Complete Genome Unicycler v. 0.4.7b 2019-08-06T18:14:57.440 Japan:Kyoto Illumina, Nanopore Department of Microbiology, Graduate School of Medicine, Kyoto University 394.0x 98.94 99.51 0.08 100 1.04 GCF_008620055.1 2759 2969 2969 134 16 59 1 Staphylococcus_aureus_homd_HMT_550 GCA_008633005.1 HMT-576 ATCC 27823 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus ATCC 27823 42 1867902 37.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/633/005/GCA_008633005.1_ASM863300v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJDB7095 184246 SAMD00149544 ASM863300v1 Scaffold velvet v. 1.2.08 2019-09-20T01:00:25.583 missing Illumina Miseq Sunstar Inc. 7300.0x 99.99 99 0.35 99.99 0.12 GCF_008633005.1 BHYN01 1775 1894 1894 74 5 39 1 Streptococcus_constellatus_homd_HMT_576 GCA_008633025.1 HMT-576 13-11-14 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus 13-11-14 16 1800973 38.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/633/025/GCA_008633025.1_ASM863302v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJDB7095 184246 SAMD00149545 ASM863302v1 Scaffold velvet v. 1.2.08 2019-09-20T01:00:26.963 Japan:Hyougo, Himeji-city, Nat Illumina Miseq Sunstar Inc. 3700.0x 97.52 99 0 99.97 0.06 GCF_008633025.1 BHYO01 1765 1860 1860 39 4 51 1 Streptococcus_constellatus_homd_HMT_576 GCA_008633045.1 HMT-644 13-12-18 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius 13-12-18 6 1946261 37.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/633/045/GCA_008633045.1_ASM863304v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJDB7095 1338 SAMD00149546 ASM863304v1 Scaffold velvet v. 1.2.08 2019-09-20T01:00:26.986 Japan:Hyougo, Himeji-city, Nat Illumina Miseq Sunstar Inc. 2900.0x 98.35 100 0 100 0.17 GCF_008633045.1 BHYP01 1903 2007 2007 38 8 57 1 Streptococcus_intermedius_homd_HMT_644 GCA_008633155.1 HMT-111 13-07-26 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra 13-07-26 14 1634483 28.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/633/155/GCA_008633155.1_ASM863315v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJDB7095 33033 SAMD00149547 ASM863315v1 Scaffold velvet v. 1.2.08 2019-09-20T01:00:27.010 Japan:Hyougo, Himeji-city, Nat Illumina Miseq Sunstar Inc. 1000.0x 97.46 98.48 0.61 99.28 0.68 GCF_008633155.1 BHYQ01 1511 1593 1593 32 9 40 1 Parvimonas_micra_homd_HMT_111 GCA_008633215.1 HMT-464 13-08-02 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 13-08-02 41 2019333 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/633/215/GCA_008633215.1_ASM863321v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJDB7095 851 SAMD00149548 ASM863321v1 Contig velvet v. 1.2.08 2019-09-20T01:00:27.030 Japan:Hyougo, Himeji-city, Nat Illumina Miseq Sunstar Inc. 700.0x 92.1 100 0 100 0.47 GCF_008633215.1 BHYR01 1898 1969 1969 15 8 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_008633305.1 HMT-644 14-03-17 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius 14-03-17 8 1845697 37.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/633/305/GCA_008633305.1_ASM863330v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJDB7095 1338 SAMD00149549 ASM863330v1 Contig velvet v. 1.2.08 2019-09-20T01:00:27.050 Japan:Hyougo, Himeji-city, Nat Illumina Miseq Sunstar Inc. 900.0x 98.32 99.79 0 100 0.21 GCF_008633305.1 BHYS01 1763 1859 1859 35 4 56 1 Streptococcus_intermedius_homd_HMT_644 GCA_008633405.1 HMT-576 15-01-28 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus 15-01-28 13 1914344 38.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/633/405/GCA_008633405.1_ASM863340v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJDB7095 184250 SAMD00149551 ASM863340v1 Scaffold velvet v. 1.2.08 2019-09-20T01:00:27.096 Japan:Hyougo, Himeji-city, Nat Illumina Miseq Sunstar Inc. 600.0x 99.88 98.57 0 99.98 0.38 GCF_008633405.1 BHYU01 1919 2018 2018 40 6 52 1 Streptococcus_constellatus_homd_HMT_576 GCA_008633485.1 HMT-644 15-03-11 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius 15-03-11 7 1813578 37.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/633/485/GCA_008633485.1_ASM863348v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJDB7095 1338 SAMD00149552 ASM863348v1 Contig velvet v. 1.2.08 2019-09-20T01:00:27.120 Japan:Hyougo, Himeji-city, Nat Illumina Miseq Sunstar Inc. 800.0x 98.34 99.88 0 99.99 0.18 GCF_008633485.1 BHYV01 1732 1829 1829 36 4 56 1 Streptococcus_intermedius_homd_HMT_644 GCA_008692995.1 HMT-626 CCUG 37985T Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 CCUG 37985T 20 1905342 30.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/692/995/GCA_008692995.1_ASM869299v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans PRJNA563568 1379 SAMN12771124 ASM869299v1 Contig SPAdes v. 3.1 2019-09-17T05:21:06.586 Missing Missing Illumina HiSeq University of Gothenburg - CCUG 386.0x 99.97 98.08 0.57 99.98 0.53 GCF_008692995.1 VXKF01 1679 1758 0 33 6 39 1 Gemella_haemolysans_HMT_434_626 GCA_008692995.1 HMT-626 CCUG 37985T Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 CCUG 37985T 20 1905342 30.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/692/995/GCA_008692995.1_ASM869299v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans PRJNA563568 1379 SAMN12771124 ASM869299v1 Contig SPAdes v. 3.1 2019-09-17T05:21:06.586 Missing Missing Illumina HiSeq University of Gothenburg - CCUG 386.0x 99.97 98.08 0.57 99.98 0.53 GCF_008692995.1 VXKF01 1679 1758 0 33 6 39 1 Gemella_haemolysans_clade_626_homd_HMT_626 GCA_008693065.1 HMT-184 CCUG 51321T Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-184 Corynebacterium tuscaniense CCUG 51321T 223 2263530 59.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/693/065/GCA_008693065.1_ASM869306v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuscaniense PRJNA563568 302449 SAMN12771122 ASM869306v1 Contig SPAdes v. 3.1 2019-09-17T05:21:06.550 Italy: Lucca blood Illumina HiSeq University of Gothenburg - CCUG 345.2x 99.99 98.33 1.17 99.77 0.46 GCF_008693065.1 VXKH01 2194 2261 2261 8 6 52 1 Corynebacterium_tuscaniense_homd_HMT_184 GCA_008693165.1 HMT-849 CCUG 34287T Named Cultivated Oral (Abundance: Medium) HMT-849 Actinomyces johnsonii CCUG 34287T 39 3357062 67.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/693/165/GCA_008693165.1_ASM869316v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces johnsonii PRJNA563568 544581 SAMN12771117 ASM869316v1 Contig SPAdes v. 3.1 2019-09-17T05:21:06.390 Missing gingival crevice Illumina HiSeq University of Gothenburg - CCUG 309.5x 99.99 100 0.95 100 0.25 GCF_008693165.1 VXKM01 2791 2863 2863 16 3 52 1 Actinomyces_johnsonii_homd_HMT_849 GCA_008693785.1 HMT-245 FDAARGOS_658 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-245 Roseomonas mucosa FDAARGOS_658 5 4996294 70.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/693/785/GCA_008693785.1_ASM869378v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas mucosa PRJNA231221 207340 SAMN11056373 ASM869378v1 Complete Genome canu v. 1.4 2019-03-05T13:52:06.163 USA: KY clinical isolate Pacbio; Illumina US Food and Drug Administration 688.1x 99.83 100 0 100 0.56 GCF_008693785.1 4527 4635 4635 22 15 70 1 Roseomonas_mucosa_homd_HMT_245 GCA_008693865.1 HMT-104 FDAARGOS_643 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-104 Paracoccus yeei FDAARGOS_643 5 4689804 67.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/693/865/GCA_008693865.1_ASM869386v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus yeei PRJNA231221 147645 SAMN11056358 ASM869386v1 Complete Genome canu v. 1.4 2019-03-05T13:52:05.873 USA: KY clinical isolate Pacbio; Illumina US Food and Drug Administration 695.3x 98.45 99.62 0.71 100 0.16 GCF_008693865.1 4538 4652 4652 48 9 56 1 Paracoccus_yeei_homd_HMT_104 GCA_008693965.1 HMT-344 FDAARGOS_637 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-344 Pseudomonas luteola FDAARGOS_637 5 5901383 55.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/693/965/GCA_008693965.1_ASM869396v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B;s__Pseudomonas_B luteola PRJNA231221 47886 SAMN11056352 ASM869396v1 Complete Genome canu v. 1.4 2019-03-05T13:52:05.763 USA: KY clinical isolate Pacbio; Illumina US Food and Drug Administration 657.9x 97.94 99.46 1.08 100 0.35 GCF_008693965.1 5654 5801 5801 57 21 68 1 Pseudomonas_luteola_homd_HMT_344 GCA_008726175.1 HMT-047 UMB9256 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB9256 65 2565104 58.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/726/175/GCA_008726175.1_ASM872617v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA316969 43765 SAMN12797048 ASM872617v1 Contig SPAdes v. 3.11.1 2019-09-20T10:47:06.107 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 40.1x 95.15 100 0 100 0.06 GCF_008726175.1 VYVD01 2221 2295 2295 13 7 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_008726215.1 HMT-047 UMB9184 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB9184 61 2494409 58.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/726/215/GCA_008726215.1_ASM872621v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA316969 43765 SAMN12797046 ASM872621v1 Contig SPAdes v. 3.11.1 2019-09-20T10:47:06.073 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 23.8x 94.92 100 0.6 100 1.93 GCF_008726215.1 VYVF01 2150 2223 2223 13 6 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_008726415.1 HMT-543 UMB8390 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus UMB8390 87 2155037 38.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/726/415/GCA_008726415.1_ASM872641v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA316969 1328 SAMN12797036 ASM872641v1 Contig SPAdes v. 3.11.1 2019-09-20T10:47:05.897 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 47.5x 95.32 99.88 0.95 100 0.41 GCF_008726415.1 VYVP01 2140 2232 2232 43 5 43 1 Streptococcus_anginosus_homd_HMT_543 GCA_008726455.1 HMT-047 UMB7760 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB7760 65 2422276 58.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/726/455/GCA_008726455.1_ASM872645v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA316969 43765 SAMN12797034 ASM872645v1 Contig SPAdes v. 3.11.1 2019-09-20T10:47:05.863 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 28.2x 94.94 100 0 100 0.37 GCF_008726455.1 VYVQ01 2087 2160 2160 13 6 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_008726645.1 HMT-031 UMB1310 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB1310 54 2492575 58.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/726/645/GCA_008726645.1_ASM872664v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA316969 43765 SAMN12797022 ASM872664v1 Contig SPAdes v. 3.11.1 2019-09-20T10:47:05.650 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 27.9x 98.64 100 0 100 0.1 GCF_008726645.1 VYWB01 2183 2256 2256 14 4 54 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_008726785.1 HMT-031 UMB1182 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB1182 41 2425544 58.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/726/785/GCA_008726785.1_ASM872678v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA316969 43765 SAMN12797015 ASM872678v1 Contig SPAdes v. 3.11.1 2019-09-20T10:47:05.530 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 35.3x 98.96 100 0 100 0.1 GCF_008726785.1 VYWH01 2111 2187 2187 15 6 54 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_008726875.1 HMT-543 UMB633 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus UMB633 44 1943307 38.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/726/875/GCA_008726875.1_ASM872687v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA316969 1328 SAMN12797009 ASM872687v1 Contig SPAdes v. 3.11.1 2019-09-20T10:47:05.430 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 48.9x 95.3 99.88 0.71 100 0.12 GCF_008726875.1 VYWM01 1947 2037 2037 39 4 46 1 Streptococcus_anginosus_homd_HMT_543 GCA_008727815.1 HMT-411 LPB0220 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis LPB0220 1 2133380 42.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/727/815/GCA_008727815.1_ASM872781v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp008727815 PRJNA565653 2610896 SAMN12769544 ASM872781v1 Complete Genome PacBio SMRT Analysis v. v2.3 2019-09-16T20:06:03.560 South Korea respiratory tract PacBio Korea University 475.7x 100 0.07 99.99 0.05 GCF_008727815.1 2001 2107 2107 31 12 62 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_008728395.1 HMT-978 VIC01 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-978 Phocaeicola vulgatus VIC01 1 5010342 42.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/728/395/GCA_008728395.1_ASM872839v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus PRJNA562608 821 SAMN12645879 ASM872839v1 Complete Genome HGAP v. 3 2019-08-28T02:40:04.566 South Korea: Seoul PacBio RSII Yonsei University College of Medicine 185.0x 99.17 98.87 0.5 100 1.95 GCF_008728395.1 4241 4363 4363 20 21 80 1 Phocaeicola_vulgatus_homd_HMT_978 GCA_008728435.1 HMT-530 ATCC 6919 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes ATCC 6919 1 2494216 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/728/435/GCA_008728435.1_ASM872843v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA573554 1747 SAMN12816929 ASM872843v1 Complete Genome SPAdes v. v3.11.1 2019-09-23T00:23:03.760 Singapore Oxford Nanopore MiniION; Illumina MiSeq Nanyang Technological University 1.0x 99.99 99.43 0.03 100 0.11 GCF_008728435.1 2304 2384 2384 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_008728715.1 HMT-128 SL29 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis SL29 1 2660394 33.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/728/715/GCA_008728715.1_ASM872871v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA554757 28035 SAMN12283062 ASM872871v1 Complete Genome HGAP v. 2.3.0 2019-07-16T05:11:10.330 France: Rouen vascular prosthesis infection Pacbio RS EA2656 GRAM 367.0x 99.54 99.61 0 100 0.1 GCF_008728715.1 2480 2648 2648 87 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_008728735.1 HMT-128 SL55 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis SL55 1 2624231 33.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/728/735/GCA_008728735.1_ASM872873v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA554757 28035 SAMN12283063 ASM872873v1 Complete Genome HGAP v. 2.3.0 2019-07-16T05:11:10.350 France: Nantes skin and soft tissues infection Pacbio RS EA2656 GRAM 272.0x 99.94 99.61 0 100 0.14 GCF_008728735.1 2465 2627 2627 83 19 59 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_008728755.1 HMT-128 SL117 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis SL117 1 2652107 33.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/728/755/GCA_008728755.1_ASM872875v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA554757 28035 SAMN12283064 ASM872875v1 Complete Genome HGAP v. 2.3.0 2019-07-16T05:11:10.370 Sweden toe Pacbio RS EA2656 GRAM 317.0x 99.55 99.61 0 100 0.24 GCF_008728755.1 2469 2635 2635 87 19 59 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_008728775.1 HMT-128 SL118 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis SL118 1 2610930 33.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/728/775/GCA_008728775.1_ASM872877v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA554757 28035 SAMN12283065 ASM872877v1 Complete Genome HGAP v. 2.3.0 2019-07-16T05:11:10.407 Sweden groin Pacbio RS EA2656 GRAM 356.0x 99.95 99.61 0 100 0.25 GCF_008728775.1 2452 2611 2611 83 16 59 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_008728795.1 HMT-128 SL122 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis SL122 1 2647211 33.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/728/795/GCA_008728795.1_ASM872879v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA554757 28035 SAMN12283066 ASM872879v1 Complete Genome HGAP v. 2.3.0 2019-07-16T05:11:10.430 Sweden groin Pacbio RS EA2656 GRAM 337.0x 99.54 99.61 0.57 100 0.17 GCF_008728795.1 2457 2624 2624 86 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_008728815.1 HMT-128 SL13 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis SL13 1 2694981 33.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/728/815/GCA_008728815.1_ASM872881v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA554757 28035 SAMN12283061 ASM872881v1 Complete Genome HGAP v. 2.3.0 2019-07-16T05:11:10.300 France: Rouen infective endocarditis Pacbio RS EA2656 GRAM 336.0x 99.54 99.61 0 100 0.49 GCF_008728815.1 2541 2709 2709 87 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_008801775.1 HMT-690 CCUG 42162 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum CCUG 42162 26 2124940 34.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/801/775/GCA_008801775.1_ASM880177v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA563568 143387 SAMN12697574 ASM880177v1 Contig SPAdes v. 3.10 2019-09-05T05:47:05.640 Missing liver abscess Illumina MiSeq University of Gothenburg - CCUG 189.9x 99.99 100 0 100 0.25 GCF_008801775.1 VZOZ01 2021 2097 2097 18 7 50 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_008801915.1 HMT-027 CCUG 38401 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-027 Cupriavidus gilardii CCUG 38401 115 5792089 67.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/801/915/GCA_008801915.1_ASM880191v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus;s__Cupriavidus gilardii PRJNA563568 82541 SAMN12697570 ASM880191v1 Contig SPAdes v. 3.10 2019-09-05T05:47:05.573 Missing Whirl pool Illumina MiSeq University of Gothenburg - CCUG 314.9x 99.96 99.89 0.69 100 0.05 GCF_008801915.1 VZOV01 5166 5252 5252 24 3 58 1 Cupriavidus_gilardii_homd_HMT_027 GCA_008802035.1 HMT-776 CCUG 9728 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-776 Campylobacter sputorum CCUG 9728 26 1728151 29.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/802/035/GCA_008802035.1_ASM880203v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F;s__Campylobacter_F sputorum PRJNA563568 32024 SAMN12697565 ASM880203v1 Contig SPAdes v. 3.10 2019-09-05T05:47:05.493 USA oral cavity Illumina MiSeq University of Gothenburg - CCUG 189.6x 99.98 99.14 0.28 99.99 0.02 GCF_008802035.1 VZOQ01 1747 1798 1798 5 2 43 1 Campylobacter_sputorum_homd_HMT_776 GCA_008831325.1 HMT-686 MD Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans MD 2 2022536 36.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/831/325/GCA_008831325.1_ASM883132v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA525085 1309 SAMN12440940 ASM883132v1 Complete Genome Canu v. 1.7 2019-08-02T13:54:05.067 Brazil: Sao Paolo Oral cavity PacBio KUMC 112.9x 99.5 100 1.31 100 1.48 GCF_008831325.1 1930 2035 2035 26 15 63 1 Streptococcus_mutans_homd_HMT_686 GCA_008831345.1 HMT-686 T8 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans T8 1 1976303 37.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/831/345/GCA_008831345.1_ASM883134v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA525085 1309 SAMN12440949 ASM883134v1 Complete Genome Flye v. 2.4.1 2019-08-02T14:00:08.463 Netherlands Oral cavity PacBio KUMC 326.2x 99.1 100 0.64 100 0.17 GCF_008831345.1 1833 1937 1937 24 15 64 1 Streptococcus_mutans_homd_HMT_686 GCA_008831365.1 HMT-686 UA140 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UA140 1 2050049 37.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/831/365/GCA_008831365.1_ASM883136v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA525085 1309 SAMN12441283 ASM883136v1 Complete Genome Flye v. 2.4.1 2019-08-02T14:09:04.837 USA: Alabama Oral cavity PacBio KUMC 195.4x 99.07 100 0.26 100 0.11 GCF_008831365.1 1900 2041 2041 59 15 66 1 Streptococcus_mutans_homd_HMT_686 GCA_008831525.1 HMT-641 PittGG Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae PittGG 1 1887343 38.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/831/525/GCA_008831525.1_ASM883152v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA575052 727 SAMN12877006 ASM883152v1 Complete Genome HGAP v. 2.3.0 2019-09-30T18:06:22.783 USA: Pittsburgh, PA middle ear fluid PacBio RSII Drexel 214.0x 97.31 99.67 0.07 100 0.01 GCF_008831525.1 1800 1911 1911 35 19 56 1 Haemophilus_influenzae_homd_HMT_641 GCA_008868275.1 HMT-087 ATCC 4698 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-087 Micrococcus luteus ATCC 4698 299 2407404 73.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/868/275/GCA_008868275.1_ASM886827v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus;s__Micrococcus luteus PRJNA573690 465515 SAMN12822026 ASM886827v1 Contig SPAdes v. 3.13.0 2019-09-23T13:07:04.810 not applicable not applicable Illumina MiSeq Signature Science, LLC 34.0x 99.98 98.7 0 99.99 0.08 GCF_008868275.1 WBMF01 2185 2253 2253 12 3 52 1 Micrococcus_luteus_homd_HMT_087 GCA_008868295.1 HMT-615 ATCC 33323 Named Cultivated Vaginal (Abundance: High) HMT-615 Lactobacillus gasseri ATCC 33323 34 1824918 35.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/868/295/GCA_008868295.1_ASM886829v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus gasseri PRJNA573690 324831 SAMN12822025 ASM886829v1 Contig SPAdes v. 3.13.0 2019-09-23T13:07:04.790 not applicable not applicable Illumina MiSeq Signature Science, LLC 122.0x 99.99 97.67 0 99.98 0 GCF_008868295.1 WBMG01 1742 1832 1832 33 4 52 1 Lactobacillus_gasseri_homd_HMT_615 GCA_008868595.1 HMT-568 BIO5773 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-568 Lacticaseibacillus casei BIO5773 21 3084211 47.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/868/595/GCA_008868595.1_ASM886859v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus casei PRJNA574342 1582 SAMN12856536 ASM886859v1 Contig SPAdes v. 3.13.1 2019-09-26T10:24:03.330 missing tissue Illumina Miseq Bioprox 91.0x 95.89 99.46 1.72 99.92 0.15 GCF_008868595.1 WBOC01 2848 2939 2939 28 6 56 1 Lacticaseibacillus_casei_homd_HMT_568 GCA_008868665.1 HMT-666 ATCC 14265 Named Cultivated Oral (Abundance: High) HMT-666 Corynebacterium matruchotii ATCC 14265 50 2850841 57.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/868/665/GCA_008868665.1_ASM886866v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium matruchotii PRJNA573690 43768 SAMN12822022 ASM886866v1 Contig SPAdes v. 3.13.0 2019-09-23T13:07:04.720 not applicable not applicable Illumina MiSeq Signature Science, LLC 84.0x 99.96 99.89 0 99.99 0.16 GCF_008868665.1 WBMK01 2540 2605 2605 8 4 52 1 Corynebacterium_matruchotii_homd_HMT_666 GCA_008975305.1 HMT-644 14-04-18 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius 14-04-18 26 1860124 37.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/975/305/GCA_008975305.1_ASM897530v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJDB7095 1338 SAMD00149550 ASM897530v1 Scaffold velvet v. 1.2.08 2019-09-20T01:00:27.073 Japan:Hyougo, Himeji-city, Nat Illumina Miseq Sunstar Inc. 800.0x 98.17 99.88 0 99.99 0.17 GCF_008975305.1 BHYT01 1789 1882 1882 32 4 56 1 Streptococcus_intermedius_homd_HMT_644 GCA_009017375.1 HMT-544 T16R-87 Named Cultivated Pathogen (Abundance: Scarce) HMT-544 Brucella anthropi T16R-87 2 4736879 55.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/017/375/GCA_009017375.1_ASM901737v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Brucella;s__Brucella anthropi PRJNA559402 529 SAMN12541229 ASM901737v1 Complete Genome HGAP v. 3.0 2019-08-08T19:58:03.356 South Korea: Buyeo rhizosphere of tomato PacBio RSII National Institute of Agricultural Sciences 282.0x 97.49 100 0 100 0.45 GCF_009017375.1 4415 4541 4541 52 12 61 1 Brucella_anthropi_homd_HMT_544 GCA_009035845.1 HMT-554 ATCC 19606 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-554 Acinetobacter baumannii ATCC 19606 3 3999136 39.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/035/845/GCA_009035845.1_ASM903584v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii PRJNA557095 470 SAMN12389466 ASM903584v1 Complete Genome Hybrid assembly v. July-31 2019-07-29T04:26:04.903 USA:Georgia, Atlanta urine Illumina MiSeq; Oxford Nanopore MiniION University of Technology Sydney 100.0x 99.99 99.63 0 100 0.13 GCF_009035845.1 3725 3858 3858 41 18 73 1 Acinetobacter_baumannii_homd_HMT_554 GCA_009177305.1 HMT-530 TP-CU389 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes TP-CU389 1 2494387 60.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/177/305/GCA_009177305.1_ASM917730v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJDB8192 1747 SAMD00166175 ASM917730v1 Complete Genome RS HGAP Assembly v. 3.0 2019-10-03T01:00:26.156 not applicable PacBio RSII Tokyo University of Pharmacy & Life Sciences 377.0x 99.51 99.36 0.03 100 0.17 GCF_009177305.1 2305 2385 2385 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_009183435.1 HMT-076 B2-b Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri B2-b 16 2569126 32.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/183/435/GCA_009183435.1_ASM918343v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA576316 2653202 SAMN12990247 ASM918343v1 Scaffold SPAdes v. 3.13 2019-10-08T02:17:04.106 South Korea: Jeju feces Illumina HiSeq Jeju National University 901.0x 99.73 0 100 0.25 GCF_009183435.1 WEHV01 2467 2584 2584 51 6 59 1 Staphylococcus_warneri_homd_HMT_076 GCA_009189185.2 HMT-120 VB5326 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus VB5326 1 2699292 32.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/189/185/GCA_009189185.2_ASM918918v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA576986 1283 SAMN10031557 ASM918918v2 Complete Genome CANU v. 1.7; UNICYCLER HYBRID v. 0.4.6 2018-09-11T06:48:05.146 India blood IonTorrent; Oxford Nanopore MiniION Christian Medical College 200.0x 99.32 99.62 0.19 99.98 0.46 GCF_009189185.2 2770 2952 2952 99 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_009295985.1 HMT-827 SCPM-O-B-6530 Named Cultivated Pathogen (Abundance: Scarce) HMT-827 Yersinia pestis SCPM-O-B-6530 5 4783760 47.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/295/985/GCA_009295985.1_ASM929598v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;s__Yersinia pestis PRJNA269675 1234662 SAMN07176224 ASM929598v1 Complete Genome Unicycler v. v0.4.7 2017-05-30T09:37:03.673 missing missing Illumina MiSeq; Oxford Nanopore MiniION SRCAMB 258.1x 99.94 99.82 0.15 100 0.21 GCF_009295985.1 4245 4589 4589 248 22 73 1 Yersinia_pestis_homd_HMT_827 GCA_009362935.1 HMT-051 LV515 Named Cultivated Vaginal (Abundance: Low) HMT-051 Limosilactobacillus vaginalis LV515 1 1894710 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/362/935/GCA_009362935.1_ASM936293v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus vaginalis PRJNA566211 1633 SAMN12784813 ASM936293v1 Complete Genome PacBio SMRT Analysis v. v2.3 2019-09-19T00:43:05.550 missing vaginal swab from patient with trichomoniasis PacBio Korea University 479.0x 99.99 99.46 1.9 99.98 0.49 GCF_009362935.1 1861 1980 1980 41 15 62 1 Limosilactobacillus_vaginalis_homd_HMT_051 GCA_009377295.1 HMT-921 J12 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-921 Paenibacillus glucanolyticus J12 48 6494398 48.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/377/295/GCA_009377295.1_ASM937729v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus glucanolyticus PRJNA565910 59843 SAMN12771811 ASM937729v1 Contig SPAdes v. JAN-2018 2019-09-17T10:04:03.350 Germany: Bonn Inner wall of a refrigerator Illumina HiSeq Universitaet Bonn 142.0x 99.39 99.85 0.15 100 0.3 GCF_009377295.1 VXLF01 5980 6066 0 0 10 75 1 Paenibacillus_glucanolyticus_homd_HMT_921 GCA_009378035.1 HMT-833 T6 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis T6 31 1925717 41.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/035/GCA_009378035.1_ASM937803v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672480 ASM937803v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:05.370 Taiwan Sputum, children 3 to 6 years Illumina MiSeq University of Western Australia 113.6x 95.86 99.45 0.27 100 0.19 GCF_009378035.1 NXCB01 1711 1765 1765 6 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378055.1 HMT-833 4737718Q Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 4737718Q 30 2105661 41.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/055/GCA_009378055.1_ASM937805v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672417 ASM937805v1 Contig SPAdes v. 3.12 2017-09-19T21:31:04.430 Australia: Perth Illumina MiSeq University of Western Australia 30.0x 95.77 99.17 0.28 99.98 0.13 GCF_009378055.1 RQWL01 1927 1979 1979 7 3 41 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378085.1 HMT-833 MC24 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis MC24 26 1876829 41.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/085/GCA_009378085.1_ASM937808v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672476 ASM937808v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:05.313 USA Illumina MiSeq University of Western Australia 26.2x 99.17 99.73 0.32 99.99 0.01 GCF_009378085.1 NXCE01 1720 1777 1777 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378105.1 HMT-833 T12 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis T12 30 1918394 41.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/105/GCA_009378105.1_ASM937810v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672481 ASM937810v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:05.387 Taiwan Sputum, children 3 to 6 years Illumina MiSeq University of Western Australia 93.9x 99.2 99.72 0.28 100 0 GCF_009378105.1 RCJA01 1771 1828 1828 11 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378215.1 HMT-833 BE4L Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis BE4L 19 1866821 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/215/GCA_009378215.1_ASM937821v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672474 ASM937821v1 Scaffold SPAdes v. 3.5.0 2017-09-19T21:31:05.287 Australia: Perth Illumina MiSeq University of Western Australia 50.9x 99.15 99.45 0.27 99.99 0.01 GCF_009378215.1 NXCF01 1707 1765 1765 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378225.1 HMT-833 BBH18 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis BBH18 25 1834438 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/225/GCA_009378225.1_ASM937822v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672470 ASM937822v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:05.227 Netherlands Sputum sample of patient with COPD in Holland Illumina MiSeq University of Western Australia 103.0x 99.18 99.73 0.27 100 0.01 GCF_009378225.1 NXCG01 1652 1708 1708 11 3 42 0 Moraxella_catarrhalis_homd_HMT_833 GCA_009378245.1 HMT-833 A16 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis A16 27 1865432 41.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/245/GCA_009378245.1_ASM937824v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672471 ASM937824v1 Scaffold SPAdes v. 3.5.0 2017-09-19T21:31:05.240 Australia saliva frozen stocks Illumina MiSeq University of Western Australia 87.6x 99.16 99.45 0.27 99.99 0.01 GCF_009378245.1 NXCI01 1700 1758 1758 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378275.1 HMT-833 ATCC43617a Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis ATCC43617a 31 1908377 41.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/275/GCA_009378275.1_ASM937827v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672473 ASM937827v1 Scaffold SPAdes v. 3.5.0 2017-09-19T21:31:05.270 Netherlands Trans-tracheal aspirate from coal miner with bronchitis Illumina MiSeq University of Western Australia 53.0x 99.15 99.45 0.27 99.99 0.01 GCF_009378275.1 NXCH01 1760 1815 1815 10 3 41 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378425.1 HMT-833 78/191/1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 78/191/1 36 1974606 41.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/425/GCA_009378425.1_ASM937842v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672445 ASM937842v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.827 Australia: Kalgoorlie Illumina MiSeq University of Western Australia 52.7x 99.17 99.72 0.44 100 0.02 GCF_009378425.1 RCJL01 1823 1880 1880 10 3 43 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378535.1 HMT-833 64/108/1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 64/108/1 17 2006492 41.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/535/GCA_009378535.1_ASM937853v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672466 ASM937853v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:05.167 Australia: Kalgoorlie Illumina MiSeq University of Western Australia 142.4x 95.82 99.18 0.27 99.99 0.28 GCF_009378535.1 RCJP01 1835 1885 1885 7 2 40 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378585.1 HMT-833 5550565E Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 5550565E 27 1893317 41.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/585/GCA_009378585.1_ASM937858v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672408 ASM937858v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.297 Australia: Perth Illumina MiSeq University of Western Australia 46.4x 99.19 100 0.28 99.98 0 GCF_009378585.1 NXCL01 1738 1796 1796 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378595.1 HMT-833 5267783B Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 5267783B 27 1993570 41.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/595/GCA_009378595.1_ASM937859v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672424 ASM937859v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.527 Australia: Perth Illumina MiSeq University of Western Australia 144.5x 99.19 99.73 0.27 100 0.01 GCF_009378595.1 RCJR01 1832 1888 1888 10 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378645.1 HMT-833 5021466N Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 5021466N 25 1893992 41.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/645/GCA_009378645.1_ASM937864v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672430 ASM937864v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.607 Australia: Perth Illumina MiSeq University of Western Australia 168.1x 99.17 99.45 0.27 100 0 GCF_009378645.1 NXCO01 1725 1783 1783 9 3 45 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378685.1 HMT-833 5021467Y Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 5021467Y 24 1893322 41.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/685/GCA_009378685.1_ASM937868v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672427 ASM937868v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.567 Australia: Perth Illumina MiSeq University of Western Australia 193.6x 99.17 99.73 0.27 100 0 GCF_009378685.1 NXCN01 1726 1783 1783 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378725.1 HMT-833 5/131/1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 5/131/1 31 1891472 41.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/725/GCA_009378725.1_ASM937872v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672437 ASM937872v1 Scaffold SPAdes v. 3.5.0 2017-09-19T21:31:04.707 Australia: Kalgoorlie Illumina MiSeq University of Western Australia 24.7x 99.24 100 0.27 99.98 0 GCF_009378725.1 NXCQ01 1733 1787 1787 9 3 41 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378755.1 HMT-833 5008863L Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 5008863L 37 1894162 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/755/GCA_009378755.1_ASM937875v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672422 ASM937875v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.497 Australia: Perth Illumina MiSeq University of Western Australia 324.4x 99.15 99.73 0.27 100 0.02 GCF_009378755.1 RCJS01 1720 1776 1776 8 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378825.1 HMT-833 4789849F Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 4789849F 35 1878510 41.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/825/GCA_009378825.1_ASM937882v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672407 ASM937882v1 Scaffold SPAdes v. 3.5.0 2017-09-19T21:31:04.283 Australia: Perth Illumina MiSeq University of Western Australia 22.3x 99.26 99.68 0.34 99.99 0 GCF_009378825.1 NXCS01 1713 1767 1767 8 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378835.1 HMT-833 41/539/1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 41/539/1 36 1870485 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/835/GCA_009378835.1_ASM937883v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672440 ASM937883v1 Scaffold SPAdes v. 3.5.0 2017-09-19T21:31:04.753 Australia: Kalgoorlie Illumina MiSeq University of Western Australia 43.1x 99.22 99.73 0.27 100 0 GCF_009378835.1 NXCU01 1720 1776 1776 10 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378895.1 HMT-833 39/355/1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 39/355/1 26 1949682 41.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/895/GCA_009378895.1_ASM937889v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672439 ASM937889v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.740 Australia: Kalgoorlie Illumina MiSeq University of Western Australia 25.9x 99.12 100 0.27 99.99 0 GCF_009378895.1 NXCV01 1820 1876 1876 11 3 41 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378915.1 HMT-833 3753746B Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 3753746B 26 1990466 41.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/915/GCA_009378915.1_ASM937891v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672406 ASM937891v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.267 Australia: Perth Illumina MiSeq University of Western Australia 52.4x 95.9 99.17 0.28 99.99 0.17 GCF_009378915.1 NXCW01 1799 1856 1856 8 4 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009378925.1 HMT-833 3481088Y Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 3481088Y 26 1969511 41.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/378/925/GCA_009378925.1_ASM937892v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672405 ASM937892v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.253 Australia: Perth Illumina MiSeq University of Western Australia 49.3x 99.11 99.73 0.27 100 0.03 GCF_009378925.1 NXCX01 1820 1879 1879 11 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379015.1 HMT-833 3331584D Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 3331584D 30 1959709 41.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/015/GCA_009379015.1_ASM937901v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672403 ASM937901v1 Scaffold SPAdes v. 3.5.0 2017-09-19T21:31:04.223 Australia: Perth Illumina MiSeq University of Western Australia 54.2x 99.13 99.45 0.27 100 0 GCF_009379015.1 NXCZ01 1836 1888 1888 9 3 39 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379145.1 HMT-833 23/41/1 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 23/41/1 31 1952307 41.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/145/GCA_009379145.1_ASM937914v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672438 ASM937914v1 Scaffold SPAdes v. 3.5.0 2017-09-19T21:31:04.723 Australia: Kalgoorlie Illumina MiSeq University of Western Australia 47.2x 99.06 100 0.27 100 0.03 GCF_009379145.1 NXDA01 1808 1860 1860 9 3 40 0 Moraxella_catarrhalis_homd_HMT_833 GCA_009379155.1 HMT-833 2047127K Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 2047127K 27 1851887 41.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/155/GCA_009379155.1_ASM937915v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672429 ASM937915v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.593 Australia: Perth Illumina MiSeq University of Western Australia 155.5x 99.18 99.45 0.27 100 0 GCF_009379155.1 RCKD01 1667 1722 1722 9 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379215.1 HMT-833 2046210Y Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 2046210Y 37 1937521 41.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/215/GCA_009379215.1_ASM937921v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672416 ASM937921v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.413 Australia: Perth Illumina MiSeq University of Western Australia 100.1x 99.13 99.73 0.27 100 0.01 GCF_009379215.1 NXDC01 1757 1815 1815 10 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379265.1 HMT-833 2023641W Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 2023641W 28 1853097 41.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/265/GCA_009379265.1_ASM937926v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672402 ASM937926v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.210 Australia: Perth Illumina MiSeq University of Western Australia 44.9x 99.17 99.73 0.27 99.99 0.01 GCF_009379265.1 NXDG01 1688 1744 1744 9 3 43 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379305.1 HMT-833 2019228G Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 2019228G 31 1850800 41.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/305/GCA_009379305.1_ASM937930v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672398 ASM937930v1 Scaffold SPAdes v. 3.5.0 2017-09-19T21:31:04.150 Australia: Perth Illumina MiSeq University of Western Australia 30.8x 99.16 100 0.27 99.98 0 GCF_009379305.1 NXDH01 1673 1729 1729 10 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379395.1 HMT-833 1583718S Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 1583718S 29 1994652 41.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/395/GCA_009379395.1_ASM937939v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672423 ASM937939v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.510 Australia: Perth Illumina MiSeq University of Western Australia 126.1x 99.19 99.73 0.27 100 0 GCF_009379395.1 RCKH01 1834 1890 1890 10 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379425.1 HMT-833 129/464/4 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 129/464/4 25 1840934 41.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/425/GCA_009379425.1_ASM937942v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672448 ASM937942v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.867 Australia: Kalgoorlie Illumina MiSeq University of Western Australia 87.5x 99.21 99.73 0.27 100 0 GCF_009379425.1 RCKK01 1659 1713 1713 7 4 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379475.1 HMT-833 113/391/3 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 113/391/3 24 1844379 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/475/GCA_009379475.1_ASM937947v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672452 ASM937947v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.927 Australia: Kalgoorlie Illumina MiSeq University of Western Australia 24.2x 99.23 99.73 0.27 100 0 GCF_009379475.1 RCKM01 1666 1720 1720 7 3 43 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379515.1 HMT-833 1098655R Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 1098655R 23 1896815 41.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/515/GCA_009379515.1_ASM937951v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672432 ASM937951v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.637 Australia: Perth Illumina MiSeq University of Western Australia 142.0x 99.16 99.73 0.27 100 0.04 GCF_009379515.1 RCKN01 1738 1796 1796 12 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379565.1 HMT-833 107/374/3 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 107/374/3 32 1920126 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/565/GCA_009379565.1_ASM937956v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672457 ASM937956v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.997 Australia: Kalgoorlie Illumina MiSeq University of Western Australia 47.6x 99.16 99.72 0.28 100 0 GCF_009379565.1 RCKP01 1733 1792 1792 11 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379585.1 HMT-833 1034084Q Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 1034084Q 23 1871110 41.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/585/GCA_009379585.1_ASM937958v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672401 ASM937958v1 Scaffold SPAdes v. 3.5.0 2017-09-19T21:31:04.197 Australia: Perth Illumina MiSeq University of Western Australia 37.8x 99.16 99.45 0.34 100 0 GCF_009379585.1 NXDI01 1714 1769 1769 8 3 43 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379625.1 HMT-833 1028680K Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 1028680K 20 1819933 41.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/625/GCA_009379625.1_ASM937962v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672400 ASM937962v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.183 Australia: Perth Illumina MiSeq University of Western Australia 70.7x 99.22 99.45 0.27 99.99 0.01 GCF_009379625.1 NXDJ01 1641 1696 1696 8 3 43 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379655.1 HMT-833 102/402/3 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 102/402/3 37 1962029 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/655/GCA_009379655.1_ASM937965v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672442 ASM937965v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.787 Australia: Kalgoorlie Illumina MiSeq University of Western Australia 33.8x 99.12 100 0.27 100 0.04 GCF_009379655.1 RCKT01 1821 1878 1878 11 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379685.1 HMT-833 1020848M Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 1020848M 25 1929449 41.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/685/GCA_009379685.1_ASM937968v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672399 ASM937968v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.167 Australia: Perth Illumina MiSeq University of Western Australia 38.4x 99.09 99.73 0.34 100 0 GCF_009379685.1 RCKS01 1759 1816 1816 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009379715.1 HMT-833 20236154 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis 20236154 24 1869929 41.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/715/GCA_009379715.1_ASM937971v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA408200 480 SAMN07672409 ASM937971v1 Contig SPAdes v. 3.5.0 2017-09-19T21:31:04.313 Australia: Perth Illumina MiSeq University of Western Australia 52.0x 99.13 99.45 0.27 99.99 0 GCF_009379715.1 NXDK01 1708 1763 1763 9 3 42 1 Moraxella_catarrhalis_homd_HMT_833 GCA_009494375.1 HMT-979 iAA615 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-979 Prevotella copri iAA615 170 3908415 45.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/494/375/GCA_009494375.1_ASM949437v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp022741625 PRJNA559898 165179 SAMN12583301 ASM949437v1 Contig SPAdes v. 3.1.1 2019-08-15T12:30:08.413 USA: New York stool from individual AA Illumina HiSeq New York University 215.0x 88.75 98.31 2.45 99.99 0.31 GCF_009494375.1 VZCD01 3237 3313 3313 17 7 51 1 Prevotella_copri_homd_HMT_979 GCA_009495335.1 HMT-979 iAA917 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-979 Prevotella copri iAA917 167 3905699 45.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/495/335/GCA_009495335.1_ASM949533v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella copri_A PRJNA559898 165179 SAMN12583250 ASM949533v1 Contig SPAdes v. 3.1.1 2019-08-15T12:30:07.536 USA: New York stool from individual AA Illumina HiSeq New York University 53.0x 88.77 98.31 2.45 99.99 0.35 GCF_009495335.1 VZAH01 3227 3311 3311 18 8 57 1 Prevotella_copri_homd_HMT_979 GCA_009495465.1 HMT-881 LA1184 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-881 Lentilactobacillus buchneri LA1184 18 2761436 44.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/495/465/GCA_009495465.1_ASM949546v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri PRJNA548312 1581 SAMN12018361 ASM949546v1 Scaffold Unicycler v. 0.4.4 2019-06-11T10:58:03.520 USA: Raleigh, NC Reduced NaCl fermented cucumber spoilage Illumina HiSeq and PacBio North Carolina State University 500.0x 99.66 99.06 0 100 0.59 GCF_009495465.1 VFBP01 2684 2811 2811 47 15 64 1 Lentilactobacillus_buchneri_homd_HMT_881 GCA_009495475.1 HMT-881 ATCC 4005 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-881 Lentilactobacillus buchneri ATCC 4005 8 2498872 44.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/495/475/GCA_009495475.1_ASM949547v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri PRJNA548312 1581 SAMN12018362 ASM949547v1 Scaffold Geneious v. 7.1.7 2019-06-11T10:58:03.563 not applicable tomato pulp Illumina HiSeq North Carolina State University 48.0x 99.99 99.06 0 100 0.22 GCF_009495475.1 VFBO01 2375 2488 2488 41 10 61 1 Lentilactobacillus_buchneri_homd_HMT_881 GCA_009495735.1 HMT-677 SM45 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM45 25 2002001 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/495/735/GCA_009495735.1_ASM949573v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105966 ASM949573v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.690 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 44.1x 93.75 99.82 0.6 99.99 0 GCF_009495735.1 WIJU01 1896 1992 1992 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009495895.1 HMT-677 SM35 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM35 25 2007565 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/495/895/GCA_009495895.1_ASM949589v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105989 ASM949589v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:05.097 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 100.6x 93.75 99.82 0.6 99.99 0 GCF_009495895.1 WIIX01 1901 1997 1997 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009495955.1 HMT-677 SM47 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM47 31 2006587 39.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/495/955/GCA_009495955.1_ASM949595v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105983 ASM949595v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.983 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 46.2x 93.75 99.82 0.6 99.99 0 GCF_009495955.1 WIJD01 1901 1997 1997 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496035.1 HMT-677 SM28 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM28 30 2007541 39.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/035/GCA_009496035.1_ASM949603v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105977 ASM949603v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.883 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 59.9x 93.75 99.82 0.6 99.99 0 GCF_009496035.1 WIJJ01 1902 1998 1998 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496045.1 HMT-677 SM30 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM30 28 2007955 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/045/GCA_009496045.1_ASM949604v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105963 ASM949604v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.637 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 51.3x 93.75 99.82 0.6 99.99 0 GCF_009496045.1 WIJX01 1900 1996 1996 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496065.1 HMT-677 SM29 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM29 24 2005875 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/065/GCA_009496065.1_ASM949606v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105978 ASM949606v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.900 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 47.6x 93.75 99.82 0.6 99.99 0 GCF_009496065.1 WIJI01 1899 1995 1995 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496075.1 HMT-677 SM46 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM46 28 2007012 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/075/GCA_009496075.1_ASM949607v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105982 ASM949607v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.967 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 52.3x 93.75 99.82 0.6 99.99 0 GCF_009496075.1 WIJE01 1902 1998 1998 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496165.1 HMT-677 SM08 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM08 18 1996012 39.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/165/GCA_009496165.1_ASM949616v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105970 ASM949616v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.760 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 51.8x 93.75 99.82 0.6 99.99 0 GCF_009496165.1 WIJQ01 1896 1992 1992 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496235.1 HMT-677 SM41 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM41 27 2032459 39.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/235/GCA_009496235.1_ASM949623v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CB PRJNA316969 28037 SAMN13105981 ASM949623v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.950 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 46.7x 94.54 99.82 0.32 100 0.02 GCF_009496235.1 WIJF01 1982 2080 2080 47 7 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496295.1 HMT-677 SM15 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM15 21 2016502 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/295/GCA_009496295.1_ASM949629v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CA PRJNA316969 28037 SAMN13105975 ASM949629v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.847 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 44.1x 94.52 99.82 0.4 100 0.03 GCF_009496295.1 WIJL01 1946 2053 2053 49 5 52 1 Streptococcus_mitis_homd_HMT_677 GCA_009496335.1 HMT-677 SM07 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM07 27 2002890 40.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/335/GCA_009496335.1_ASM949633v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105957 ASM949633v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.533 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 64.7x 93.75 99.82 0.6 99.99 0 GCF_009496335.1 WIKD01 1897 1993 1993 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496355.1 HMT-677 SM27 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM27 27 2001505 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/355/GCA_009496355.1_ASM949635v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105962 ASM949635v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.620 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 53.3x 93.75 99.82 0.6 99.99 0 GCF_009496355.1 WIJY01 1896 1992 1992 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496375.1 HMT-677 SM09 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM09 15 1973655 39.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/375/GCA_009496375.1_ASM949637v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CB PRJNA316969 28037 SAMN13105958 ASM949637v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.550 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 68.4x 94.54 99.82 0.32 100 0.02 GCF_009496375.1 WIKC01 1891 1987 1987 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496385.1 HMT-677 SM26 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM26 27 2060956 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/385/GCA_009496385.1_ASM949638v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_Q PRJNA316969 28037 SAMN13105961 ASM949638v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.603 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 58.5x 93.1 99.42 0.4 99.99 0.01 GCF_009496385.1 WIJZ01 1926 2024 2024 50 5 42 1 Streptococcus_mitis_homd_HMT_677 GCA_009496395.1 HMT-677 SM05 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM05 23 2001354 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/395/GCA_009496395.1_ASM949639v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105956 ASM949639v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.503 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 59.2x 93.75 99.82 0.6 99.99 0 GCF_009496395.1 WIKE01 1891 1988 1988 48 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496435.1 HMT-677 SM04 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM04 21 2000773 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/435/GCA_009496435.1_ASM949643v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105968 ASM949643v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.727 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 51.5x 93.75 99.82 0.6 99.99 0 GCF_009496435.1 WIJS01 1895 1991 1991 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496505.1 HMT-677 SM06 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM06 27 2002705 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/505/GCA_009496505.1_ASM949650v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105969 ASM949650v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:04.743 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 59.0x 93.75 99.82 0.6 99.99 0 GCF_009496505.1 WIJR01 1897 1994 1994 48 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496725.1 HMT-677 SM44 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM44 23 2000125 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/725/GCA_009496725.1_ASM949672v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105994 ASM949672v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:05.183 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 115.2x 93.75 99.82 0.6 99.99 0 GCF_009496725.1 WIIS01 1893 1989 1989 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496735.1 HMT-677 SM43 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM43 26 2000668 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/735/GCA_009496735.1_ASM949673v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105993 ASM949673v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:05.167 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 94.0x 93.75 99.82 0.6 99.99 0 GCF_009496735.1 WIIT01 1891 1987 1987 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496755.1 HMT-677 SM42 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM42 33 2007726 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/755/GCA_009496755.1_ASM949675v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105992 ASM949675v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:05.150 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 115.2x 93.75 99.82 0.6 99.99 0 GCF_009496755.1 WIIU01 1898 1994 1994 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496795.1 HMT-677 SM37 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM37 29 2006041 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/795/GCA_009496795.1_ASM949679v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105991 ASM949679v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:05.133 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 76.0x 93.75 99.82 0.6 99.99 0 GCF_009496795.1 WIIV01 1899 1995 1995 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496805.1 HMT-677 SM19 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM19 27 2006191 39.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/805/GCA_009496805.1_ASM949680v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105988 ASM949680v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:05.080 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 111.1x 93.75 99.82 0.6 99.99 0 GCF_009496805.1 WIIY01 1899 1995 1995 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496815.1 HMT-677 SM36 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM36 25 2005820 39.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/815/GCA_009496815.1_ASM949681v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105990 ASM949681v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:05.117 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 106.0x 93.75 99.82 0.6 99.99 0 GCF_009496815.1 WIIW01 1898 1994 1994 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496835.1 HMT-677 SM18 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM18 30 2000922 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/835/GCA_009496835.1_ASM949683v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105987 ASM949683v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:05.063 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 137.5x 93.75 99.82 0.6 99.99 0 GCF_009496835.1 WIIZ01 1890 1986 1986 47 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496895.1 HMT-677 SM49 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM49 30 1996076 39.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/895/GCA_009496895.1_ASM949689v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BM PRJNA316969 28037 SAMN13105984 ASM949689v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:05.000 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 64.5x 93.75 99.82 0.6 99.99 0 GCF_009496895.1 WIJC01 1900 1995 1995 47 4 43 1 Streptococcus_mitis_homd_HMT_677 GCA_009496905.1 HMT-677 SM50 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM50 18 1894166 40.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/905/GCA_009496905.1_ASM949690v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CG PRJNA316969 28037 SAMN13105985 ASM949690v1 Contig SPAdes v. 3.11.1 2019-10-23T20:38:05.023 USA: Maywood, IL Illumina MiSeq Loyola University Chicago 49.3x 93.41 99.78 0.37 99.99 0.47 GCF_009496905.1 WIJB01 1793 1895 1895 46 6 49 1 Streptococcus_mitis_homd_HMT_677 GCA_009498455.1 HMT-717 5C-2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-717 Variovorax paradoxus 5C-2 1 7288087 67.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/498/455/GCA_009498455.1_ASM949845v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax;s__Variovorax paradoxus_H PRJNA579941 34073 SAMN13140870 ASM949845v1 Complete Genome canu v. 1.7; pilon v. 1.22 2019-10-28T10:11:03.530 Russia soil Oxford Nanopore; Illumina MiSeq Kazan Institute of Biochemistry and Biophysics RAS 311.0x 87.33 100 2.38 100 4.04 GCF_009498455.1 6688 6784 6784 27 6 62 1 Variovorax_paradoxus_homd_HMT_717 GCA_009648895.1 HMT-753 CFSAN068773 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-753 Cronobacter sakazakii CFSAN068773 4 4581781 56.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/648/895/GCA_009648895.1_ASM964889v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter;s__Cronobacter sakazakii PRJNA541977 28141 SAMN10574727 ASM964889v1 Complete Genome SPAdes, CANU v. 3.12.0, 1.7 2018-12-10T14:31:05.080 missing missing Oxford Nanopore GridION, Illumina MiSeq FDA Center for Food Safety and Applied Nutrition 98.01 99.69 0.14 100 0.03 GCF_009648895.1 4162 4385 4385 117 22 83 1 Cronobacter_sakazakii_homd_HMT_753 GCA_009648915.1 HMT-565 MiY-F Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-565 Enterobacter cancerogenus MiY-F 2 4992573 55.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/648/915/GCA_009648915.1_ASM964891v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter cancerogenus PRJNA541977 69218 SAMN10574725 ASM964891v1 Complete Genome SPAdes, CANU v. 3.12.0, 1.7 2018-12-10T14:31:04.130 USA:MI cilantro Oxford Nanopore GridION, Illumina MiSeq FDA Center for Food Safety and Applied Nutrition 98.97 100 0.3 100 0.05 GCF_009648915.1 4549 4798 4798 137 25 86 1 Enterobacter_cancerogenus_homd_HMT_565 GCA_009650155.1 HMT-550 CFSAN007894 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus CFSAN007894 2 2754985 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/650/155/GCA_009650155.1_ASM965015v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA494566 1280 SAMN03763989 ASM965015v1 Complete Genome SPAdes v. 3.12.0; CANU v. 1.7 2015-06-05T15:13:23.000 USA environmental swab sponge bakery hallway Illumina MiSeq; Oxford Nanopore GridION FDA Center for Food Safety and Applied Nutrition 94.0x 98.95 99.51 0.08 100 0.15 GCF_009650155.1 2503 2701 2701 117 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_009650805.1 HMT-577 EI_07 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens EI_07 81 2412728 55.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/650/805/GCA_009650805.1_ASM965080v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA566316 539 SAMN12777674 ASM965080v1 Contig SPAdes v. 3.11.1 2019-09-18T06:34:05.016 Norway: Bergen brain abscess Illumina MiSeq Haukeland University Hospital 183.0x 97.85 96.49 0.56 100 0.15 GCF_009650805.1 VYYM01 2379 2445 2445 12 3 50 1 Eikenella_corrodens_homd_HMT_577 GCA_009650815.1 HMT-577 EI_09 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens EI_09 60 2224963 55.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/650/815/GCA_009650815.1_ASM965081v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA566316 539 SAMN12777676 ASM965081v1 Contig SPAdes v. 3.11.1 2019-09-18T06:34:05.110 Norway: Bergen Blood culture Illumina MiSeq Haukeland University Hospital 153.0x 96.06 96.49 0.45 100 0.3 GCF_009650815.1 VYYK01 2102 2161 2161 11 3 44 1 Eikenella_corrodens_homd_HMT_577 GCA_009650825.1 HMT-577 EI_05 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens EI_05 95 2331998 55.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/650/825/GCA_009650825.1_ASM965082v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA566316 539 SAMN12777672 ASM965082v1 Contig SPAdes v. 3.11.1 2019-09-18T06:34:04.983 Norway: Bergen Blodd culture Illumina MiSeq Haukeland University Hospital 147.0x 96.88 96.49 0.79 100 0.04 GCF_009650825.1 VYYO01 2239 2308 2308 11 3 54 1 Eikenella_corrodens_homd_HMT_577 GCA_009650835.1 HMT-577 EI_06 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens EI_06 193 2461924 55.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/650/835/GCA_009650835.1_ASM965083v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA566316 539 SAMN12777673 ASM965083v1 Contig SPAdes v. 3.11.1 2019-09-18T06:34:04.999 Norway: Bergen Pulmonary abscess Illumina MiSeq Haukeland University Hospital 123.0x 97.47 96.49 0.9 100 0.45 GCF_009650835.1 VYYN01 2384 2446 2446 12 3 46 1 Eikenella_corrodens_homd_HMT_577 GCA_009650845.1 HMT-577 EI_08 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens EI_08 138 2362358 55.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/650/845/GCA_009650845.1_ASM965084v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA566316 539 SAMN12777675 ASM965084v1 Contig SPAdes v. 3.11.1 2019-09-18T06:34:05.076 Norway: Bergen Pleural empyema Illumina MiSeq Haukeland University Hospital 130.0x 97.51 96.26 1.13 100 0.44 GCF_009650845.1 VYYL01 2264 2325 2325 11 3 46 1 Eikenella_corrodens_homd_HMT_577 GCA_009650905.1 HMT-577 EI_03 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens EI_03 100 2185166 55.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/650/905/GCA_009650905.1_ASM965090v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA566316 539 SAMN12777670 ASM965090v1 Contig SPAdes v. 3.11.1 2019-09-18T06:34:04.953 Norway: Bergen Spondylodiscitis Illumina MiSeq Haukeland University Hospital 146.0x 97.03 96.26 0.45 100 0.06 GCF_009650905.1 VYYQ01 2045 2106 2106 11 3 46 1 Eikenella_corrodens_homd_HMT_577 GCA_009650925.1 HMT-577 EI_04 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens EI_04 120 2246558 55.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/650/925/GCA_009650925.1_ASM965092v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA566316 539 SAMN12777671 ASM965092v1 Contig SPAdes v. 3.11.1 2019-09-18T06:34:04.968 Norway: Bergen Blood culture Illumina MiSeq Haukeland University Hospital 146.0x 97.58 96.49 0.45 100 0.08 GCF_009650925.1 VYYP01 2132 2194 2194 11 3 47 1 Eikenella_corrodens_homd_HMT_577 GCA_009650945.1 HMT-577 EI_01 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens EI_01 68 2239719 55.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/650/945/GCA_009650945.1_ASM965094v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA566316 539 SAMN12777668 ASM965094v1 Contig SPAdes v. 3.11.1 2019-09-18T06:34:04.914 Norway: Bergen Pulmonary abscess Illumina MiSeq Haukeland University Hospital 149.0x 96.53 96.48 0.68 100 0.03 GCF_009650945.1 VYYS01 2138 2203 2203 13 3 48 1 Eikenella_corrodens_homd_HMT_577 GCA_009663495.1 HMT-116 APC2923 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis APC2923 16 2552268 32.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/663/495/GCA_009663495.1_ASM966349v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA578371 29388 SAMN13058796 ASM966349v1 Scaffold SPAdes v. 3.10.0 2019-10-18T12:11:09.450 Ireland: Cork toe web-space skin Illumina MiSeq APC Microbiome Ireland 25.0x 98.81 99.81 0.1 100 0.41 GCF_009663495.1 WHVU01 2453 2572 2572 51 8 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_009663915.1 HMT-804 NCDO176 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-804 Lactococcus lactis NCDO176 120 2445329 35.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/663/915/GCA_009663915.1_ASM966391v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis PRJNA574907 1360 SAMN12871692 ASM966391v1 Contig SPAdes v. 3.11.1 2019-09-30T06:38:03.493 Unknown DSMZ collection BGISEQ University of Groningen 100.0x 98.81 100 0.38 100 0.31 GCF_009663915.1 WJUL01 2440 2541 2541 44 4 52 1 Lactococcus_lactis_homd_HMT_804 GCA_009663945.1 HMT-127 SHYJILJH Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis SHYJILJH 20 2214275 31.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/663/945/GCA_009663945.1_ASM966394v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA580115 1290 SAMN13151851 ASM966394v1 Contig a5-miseq v. 20150522 2019-10-29T05:14:04.593 China: Shaanxi soil from plant root system Illumina HiSeq NWAFU 363.0x 99.28 99.38 0 100 0 GCF_009663945.1 WJUO01 2137 2256 2256 52 8 58 1 Staphylococcus_hominis_homd_HMT_127 GCA_009664675.1 HMT-669 AUSMDU00005726 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis AUSMDU00005726 1 2166248 51.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/664/675/GCA_009664675.1_ASM966467v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA556438 487 SAMN13191641 ASM966467v1 Complete Genome Unicycler v. 0.4.6 2019-11-04T12:15:04.563 Australia blood PacBio RSII, Illumina NextSeq Microbiological Diagnostic Unit 768.0x 97.48 99.75 0.19 99.99 0 GCF_009664675.1 1977 2076 2076 34 12 52 1 Neisseria_meningitidis_homd_HMT_669 GCA_009664695.1 HMT-669 AUSMDU00010537 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis AUSMDU00010537 1 2185677 51.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/664/695/GCA_009664695.1_ASM966469v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA556438 487 SAMN13191640 ASM966469v1 Complete Genome HGAP v. 3 2019-11-04T12:15:04.547 Australia blood PacBio RSII, Illumina NextSeq Microbiological Diagnostic Unit 678.0x 97.3 99.83 0.21 99.99 0 GCF_009664695.1 2038 2129 2129 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_009707975.1 HMT-445 85 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 85 55 2669544 61.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/707/975/GCA_009707975.1_ASM970797v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA510229 3051103 SAMN10600677 ASM970797v1 Contig SPAdes v. 3.10.0 2018-12-16T05:39:04.410 Argentina IonTorrent Federal University of Bahia 900.0x 96.73 99.12 0.13 99.96 0.36 GCF_009707975.1 VHIS01 2522 2588 0 8 5 52 1 Corynebacterium_hesseae_homd_HMT_445 GCA_009707995.1 HMT-445 13 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 13 61 2637059 61.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/707/995/GCA_009707995.1_ASM970799v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA510229 3051103 SAMN12175570 ASM970799v1 Contig SPAdes v. 3.10.0 2019-07-01T21:50:06.836 Argentina Sebaceous cyst IonTorrent Federal University of Bahia 930.0x 99.78 0 99.77 0.33 GCF_009707995.1 VIOF01 2470 2537 0 8 6 52 1 Corynebacterium_hesseae_homd_HMT_445 GCA_009708045.1 HMT-450 332 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 332 48 2744408 61.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/708/045/GCA_009708045.1_ASM970804v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA510229 3139423 SAMN10600679 ASM970804v1 Contig SPAdes v. 3.10.0 2018-12-16T07:29:04.190 Argentina IonTorrent Federal University of Bahia 669.0x 99.03 0.27 99.99 1.05 GCF_009708045.1 VIOG01 2575 2643 0 8 7 52 1 Corynebacterium_aurimucosum_clade_450_homd_HMT_450 GCA_009708045.1 HMT-450 332 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-450 Corynebacterium aurimucosum clade-450 332 48 2744408 61.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/708/045/GCA_009708045.1_ASM970804v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hiratae PRJNA510229 3139423 SAMN10600679 ASM970804v1 Contig SPAdes v. 3.10.0 2018-12-16T07:29:04.190 Argentina IonTorrent Federal University of Bahia 669.0x 99.03 0.27 99.99 1.05 GCF_009708045.1 VIOG01 2575 2643 0 8 7 52 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_009710745.1 HMT-161 BIOML-A1 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula BIOML-A1 62 2155958 38.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/710/745/GCA_009710745.1_ASM971074v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJNA544527 29466 SAMN11946668 ASM971074v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:21.660 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 959.4x 96.84 100 0 99.99 0.28 GCF_009710745.1 WMKM01 1890 1969 1969 23 8 47 1 Veillonella_parvula_homd_HMT_161 GCA_009710775.1 HMT-161 BIOML-A2 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula BIOML-A2 17 2056570 38.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/710/775/GCA_009710775.1_ASM971077v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA544527 29466 SAMN11946669 ASM971077v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:21.676 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 87.3x 96.84 100 0 99.99 0.32 GCF_009710775.1 WMKL01 1810 1884 1884 22 5 46 1 Veillonella_parvula_homd_HMT_161 GCA_009710825.1 HMT-156 BIOML-A2 Named Cultivated Oral (Abundance: High) HMT-156 Veillonella nakazawae BIOML-A2 12 2077033 38.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/710/825/GCA_009710825.1_ASM971082v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella nakazawae PRJNA544527 39778 SAMN11946666 ASM971082v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:21.626 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 78.9x 93.31 100 0 99.99 0.19 GCF_009710825.1 WMKO01 1856 1925 1925 18 5 45 1 Veillonella_nakazawae_homd_HMT_156 GCA_009710845.1 HMT-156 BIOML-A1 Named Cultivated Oral (Abundance: High) HMT-156 Veillonella nakazawae BIOML-A1 26 2084342 38.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/710/845/GCA_009710845.1_ASM971084v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella nakazawae PRJNA544527 39778 SAMN11946665 ASM971084v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:21.610 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 105.0x 93.23 100 0 99.99 0.13 GCF_009710845.1 WMKP01 1881 1954 1954 18 8 46 1 Veillonella_nakazawae_homd_HMT_156 GCA_009716755.1 HMT-755 BIOML-A36 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A36 14 2159533 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/716/755/GCA_009716755.1_ASM971675v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946409 ASM971675v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.880 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 85.2x 95.15 99.55 1.46 100 0.18 GCF_009716755.1 WMXJ01 1984 2067 2067 33 5 44 1 Streptococcus_salivarius_homd_HMT_755 GCA_009716765.1 HMT-755 BIOML-A35 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A35 29 2089069 39.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/716/765/GCA_009716765.1_ASM971676v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA544527 1304 SAMN11946408 ASM971676v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.863 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 103.4x 95.87 99.9 0.58 99.99 0.17 GCF_009716765.1 WMXK01 1905 1988 1988 36 3 43 1 Streptococcus_salivarius_homd_HMT_755 GCA_009716785.1 HMT-755 BIOML-A34 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A34 30 2091603 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/716/785/GCA_009716785.1_ASM971678v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA544527 1304 SAMN11946407 ASM971678v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.846 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 135.5x 95.87 99.9 0.58 99.99 0.18 GCF_009716785.1 WMXL01 1906 1994 1994 38 3 46 1 Streptococcus_salivarius_homd_HMT_755 GCA_009716795.1 HMT-073 BIOML-A1 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis BIOML-A1 6 1980351 42.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/716/795/GCA_009716795.1_ASM971679v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp004166885 PRJNA544527 2584682 SAMN11946410 ASM971679v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.896 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 168.7x 100 0 99.98 0.01 GCF_009716795.1 WMXI01 1880 1964 1964 36 3 44 1 Streptococcus_australis_homd_HMT_073 GCA_009716965.1 HMT-755 BIOML-A26 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A26 34 2094880 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/716/965/GCA_009716965.1_ASM971696v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA544527 1304 SAMN11946399 ASM971696v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.713 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 372.1x 95.87 99.9 0.58 99.99 0 GCF_009716965.1 WMXT01 1899 1990 1990 38 3 49 1 Streptococcus_salivarius_homd_HMT_755 GCA_009716995.1 HMT-755 BIOML-A29 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A29 17 2134102 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/716/995/GCA_009716995.1_ASM971699v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946402 ASM971699v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.763 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 262.0x 95.12 99.58 1.46 99.99 0.07 GCF_009716995.1 WMXQ01 1960 2058 2058 59 5 33 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717045.1 HMT-755 BIOML-A24 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A24 11 2137542 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/045/GCA_009717045.1_ASM971704v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946397 ASM971704v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.680 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 229.7x 95.11 99.58 1.46 99.99 0.07 GCF_009717045.1 WMXV01 1958 2066 2066 56 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717055.1 HMT-755 BIOML-A25 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A25 14 2135103 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/055/GCA_009717055.1_ASM971705v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946398 ASM971705v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.696 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 218.1x 95.13 99.58 1.46 99.99 0.03 GCF_009717055.1 WMXU01 1962 2073 2073 59 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717065.1 HMT-755 BIOML-A23 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A23 22 2163566 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/065/GCA_009717065.1_ASM971706v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946396 ASM971706v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.663 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 53.7x 95.16 99.58 1.46 99.99 0.03 GCF_009717065.1 WMXW01 1984 2078 2078 42 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717105.1 HMT-755 BIOML-A21 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A21 18 2134050 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/105/GCA_009717105.1_ASM971710v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946394 ASM971710v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.630 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 124.9x 95.13 99.58 1.46 99.99 0.02 GCF_009717105.1 WMXY01 1959 2066 2066 55 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717115.1 HMT-755 BIOML-A22 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A22 13 2134163 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/115/GCA_009717115.1_ASM971711v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946395 ASM971711v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.646 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 223.4x 95.13 99.58 1.46 99.99 0.07 GCF_009717115.1 WMXX01 1958 2065 2065 55 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717155.1 HMT-755 BIOML-A18 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A18 35 2095073 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/155/GCA_009717155.1_ASM971715v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA544527 1304 SAMN11946391 ASM971715v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.580 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 210.0x 95.87 99.9 0.58 99.99 0.18 GCF_009717155.1 WMYB01 1902 1979 1979 38 4 34 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717165.1 HMT-755 BIOML-A19 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A19 19 2134979 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/165/GCA_009717165.1_ASM971716v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946392 ASM971716v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.600 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 123.6x 95.13 99.58 1.46 99.99 0.03 GCF_009717165.1 WMYA01 1957 2067 2067 56 3 50 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717205.1 HMT-755 BIOML-A17 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A17 32 2088645 39.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/205/GCA_009717205.1_ASM971720v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA544527 1304 SAMN11946390 ASM971720v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.566 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 155.3x 95.87 99.9 0.58 99.99 0.17 GCF_009717205.1 WMYC01 1904 1993 1993 38 3 47 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717225.1 HMT-755 BIOML-A16 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A16 11 2135594 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/225/GCA_009717225.1_ASM971722v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946389 ASM971722v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.550 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 141.1x 95.12 99.58 1.46 99.99 0.07 GCF_009717225.1 WMYD01 1958 2060 2060 50 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717245.1 HMT-755 BIOML-A15 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A15 20 2136037 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/245/GCA_009717245.1_ASM971724v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946388 ASM971724v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.533 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 101.3x 95.13 99.58 1.46 99.98 0.02 GCF_009717245.1 WMYE01 1961 2063 2063 48 5 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717255.1 HMT-755 BIOML-A14 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A14 34 2094279 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/255/GCA_009717255.1_ASM971725v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA544527 1304 SAMN11946387 ASM971725v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.516 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 112.6x 95.87 99.9 0.58 99.99 0.03 GCF_009717255.1 WMYF01 1899 1987 1987 37 3 47 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717265.1 HMT-755 BIOML-A13 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A13 22 2147103 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/265/GCA_009717265.1_ASM971726v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946386 ASM971726v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.500 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 125.9x 95.13 99.58 1.46 99.98 0.03 GCF_009717265.1 WMYG01 1978 2089 2089 59 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717325.1 HMT-755 BIOML-A10 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A10 15 2109985 40.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/325/GCA_009717325.1_ASM971732v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA544527 1304 SAMN11946383 ASM971732v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.450 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 221.9x 96.6 99.84 0.58 100 0.03 GCF_009717325.1 WMYI01 1888 1973 1973 33 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717375.1 HMT-755 BIOML-A7 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A7 22 2113391 40.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/375/GCA_009717375.1_ASM971737v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA544527 1304 SAMN11946380 ASM971737v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.403 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 245.2x 96.6 99.84 0.58 100 0.03 GCF_009717375.1 WMYL01 1892 1977 1977 32 4 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717425.1 HMT-755 BIOML-A5 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A5 19 2343979 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/425/GCA_009717425.1_ASM971742v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946378 ASM971742v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.370 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 116.8x 95 99.75 0.68 100 0.18 GCF_009717425.1 WMYN01 2128 2218 2218 38 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717435.1 HMT-755 BIOML-A4 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A4 22 2345253 39.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/435/GCA_009717435.1_ASM971743v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946377 ASM971743v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.353 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 627.9x 94.98 99.66 0.68 99.99 0.18 GCF_009717435.1 WMYO01 2138 2228 2228 38 3 48 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717465.1 HMT-755 BIOML-A2 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A2 25 2066814 39.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/465/GCA_009717465.1_ASM971746v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946375 ASM971746v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.300 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 270.4x 95.68 99.53 0.15 99.99 0.03 GCF_009717465.1 WMYQ01 1885 1962 1962 30 3 43 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717495.1 HMT-755 BIOML-A1 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius BIOML-A1 24 2065453 39.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/495/GCA_009717495.1_ASM971749v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA544527 1304 SAMN11946374 ASM971749v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.283 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 587.6x 95.66 99.53 0.15 99.99 0.03 GCF_009717495.1 WMYR01 1885 1966 1966 30 3 47 1 Streptococcus_salivarius_homd_HMT_755 GCA_009717525.1 HMT-411 BIOML-A18 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A18 10 2040715 41.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/525/GCA_009717525.1_ASM971752v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_D PRJNA544527 1318 SAMN11946373 ASM971752v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.266 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 182.7x 94.47 100 0.07 100 0 GCF_009717525.1 WMYS01 1944 2026 2026 35 3 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717535.1 HMT-411 BIOML-A17 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A17 14 2115174 42.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/535/GCA_009717535.1_ASM971753v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_W PRJNA544527 1318 SAMN11946372 ASM971753v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.253 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 199.4x 94.14 100 0 100 0.01 GCF_009717535.1 WMYT01 2022 2108 2108 36 3 46 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717545.1 HMT-411 BIOML-A16 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A16 12 2134553 42.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/545/GCA_009717545.1_ASM971754v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus caecimuris PRJNA544527 1318 SAMN11946371 ASM971754v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.236 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 122.4x 94.21 100 0.24 100 0.03 GCF_009717545.1 WMYU01 1990 2070 2070 34 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717575.1 HMT-411 BIOML-A14 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A14 12 2130061 42.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/575/GCA_009717575.1_ASM971757v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp034134805 PRJNA544527 1318 SAMN11946369 ASM971757v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.203 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 90.4x 94.22 100 0.32 100 0.43 GCF_009717575.1 WMYW01 1987 2067 2067 34 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717595.1 HMT-411 BIOML-A15 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A15 17 2116342 42.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/595/GCA_009717595.1_ASM971759v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_W PRJNA544527 1318 SAMN11946370 ASM971759v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.220 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 202.0x 94.14 100 0 100 0.01 GCF_009717595.1 WMYV01 2026 2108 2108 36 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717625.1 HMT-411 BIOML-A13 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A13 159 2311450 43.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/625/GCA_009717625.1_ASM971762v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_W PRJNA544527 1318 SAMN11946368 ASM971762v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.186 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 106.7x 94.13 100 3.42 100 2.84 GCF_009717625.1 WMYX01 2184 2278 2278 37 6 50 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717635.1 HMT-411 BIOML-A12 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A12 29 1974799 42.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/635/GCA_009717635.1_ASM971763v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_C PRJNA544527 1318 SAMN11946367 ASM971763v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.170 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 520.0x 94.18 100 0.38 99.99 0.04 GCF_009717635.1 WMYY01 1862 1953 1953 34 3 53 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717665.1 HMT-411 BIOML-A11 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A11 18 2127529 42.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/665/GCA_009717665.1_ASM971766v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_W PRJNA544527 1318 SAMN11946366 ASM971766v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.150 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 757.9x 94.14 100 0 100 0.01 GCF_009717665.1 WMYZ01 2040 2124 2124 36 3 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717675.1 HMT-411 BIOML-A10 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A10 7 2126190 42.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/675/GCA_009717675.1_ASM971767v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus caecimuris PRJNA544527 1318 SAMN11946365 ASM971767v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.133 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 373.3x 94.22 100 0.24 100 0.02 GCF_009717675.1 WMZA01 1984 2064 2064 34 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717705.1 HMT-411 BIOML-A9 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A9 49 2102769 42.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/705/GCA_009717705.1_ASM971770v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_W PRJNA544527 1318 SAMN11946364 ASM971770v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.116 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 275.3x 94.14 100 0 100 0.01 GCF_009717705.1 WMZB01 2002 2084 2084 36 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717715.1 HMT-411 BIOML-A8 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A8 7 2126216 42.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/715/GCA_009717715.1_ASM971771v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus caecimuris PRJNA544527 1318 SAMN11946363 ASM971771v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.100 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 171.3x 94.22 100 0.24 100 0.02 GCF_009717715.1 WMZC01 1986 2066 2066 34 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717735.1 HMT-411 BIOML-A7 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A7 24 2114172 42.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/735/GCA_009717735.1_ASM971773v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_W PRJNA544527 1318 SAMN11946362 ASM971773v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.080 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 155.2x 94.14 100 0 100 0.01 GCF_009717735.1 WMZD01 2020 2102 2102 36 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717765.1 HMT-411 BIOML-A6 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A6 6 1949143 42.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/765/GCA_009717765.1_ASM971776v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_C PRJNA544527 1318 SAMN11946361 ASM971776v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.063 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 57.7x 94.17 100 0.17 100 0.04 GCF_009717765.1 WMZE01 1853 1933 1933 33 3 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717775.1 HMT-411 BIOML-A5 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A5 15 2151756 41.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/775/GCA_009717775.1_ASM971777v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_L PRJNA544527 1318 SAMN11946360 ASM971777v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.046 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 137.6x 94.14 100 0.07 100 0 GCF_009717775.1 WMZF01 2035 2118 2118 32 3 47 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717805.1 HMT-411 BIOML-A4 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A4 13 2005283 42.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/805/GCA_009717805.1_ASM971780v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_C PRJNA544527 1318 SAMN11946359 ASM971780v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:16.030 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 234.4x 94.01 100 0 99.99 0 GCF_009717805.1 WMZG01 1898 1981 1981 35 3 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717815.1 HMT-411 BIOML-A3 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A3 13 2107852 42.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/815/GCA_009717815.1_ASM971781v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA544527 1318 SAMN11946358 ASM971781v1 Contig SPAdes v. 3.9.1 2019-06-03T16:41:16.013 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 259.9x 94.02 100 0 99.99 0 GCF_009717815.1 WMZH01 2000 2085 2085 37 3 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009717845.1 HMT-411 BIOML-A2 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis BIOML-A2 13 2027355 41.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/845/GCA_009717845.1_ASM971784v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_C PRJNA544527 1318 SAMN11946357 ASM971784v1 Scaffold SPAdes v. 3.9.1 2019-06-03T16:41:15.996 USA:Boston Illumina NextSeq Massachusetts Institute of Technology 123.7x 94.02 100 0 99.99 0 GCF_009717845.1 WMZI01 1927 2009 2009 36 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_009728485.1 HMT-306 A2879 Named Cultivated Oral (Abundance: High) HMT-306 Prevotella vespertina A2879 24 2818117 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/728/485/GCA_009728485.1_ASM972848v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella vespertina PRJNA564064 2608404 SAMN12699032 ASM972848v1 Scaffold SPAdes v. 3.1.13 2019-09-05T10:15:03.670 Germany abscess swab Illumina MiSeq Tuebingen University Hospital 274.0x 99.32 0.51 99.99 0.15 GCF_009728485.1 VVIQ01 2338 2404 2404 9 5 51 1 Prevotella_vespertina_homd_HMT_306 GCA_009730115.1 HMT-127 FDAARGOS_747 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis FDAARGOS_747 4 2242116 31.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/115/GCA_009730115.1_ASM973011v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA231221 1290 SAMN11056462 ASM973011v1 Complete Genome canu v. 1.4 2019-03-05T13:52:07.807 USA:MN clinical isolate Pacbio; Illumina US Food and Drug Administration 1980.6x 99.43 99.38 0 100 0.09 GCF_009730115.1 2150 2290 2290 58 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_009730135.1 HMT-127 FDAARGOS_746 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis FDAARGOS_746 3 2372192 31.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/135/GCA_009730135.1_ASM973013v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA231221 1290 SAMN11056461 ASM973013v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:07.790 USA:MN clinical isolate Pacbio; Illumina US Food and Drug Administration 1876.0x 98.86 99.38 1.22 99.98 0 GCF_009730135.1 2304 2451 2451 65 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_009730295.1 HMT-757 FDAARGOS_742 Named Cultivated Oral (Abundance: Medium) HMT-757 Gemella sanguinis FDAARGOS_742 1 1796606 29.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/295/GCA_009730295.1_ASM973029v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella sanguinis PRJNA231221 84135 SAMN11056457 ASM973029v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:07.716 USA:VA expectorated sputum Pacbio; Illumina US Food and Drug Administration 2045.8x 96.26 98.56 0 99.99 0.82 GCF_009730295.1 1674 1756 1756 28 12 41 1 Gemella_sanguinis_homd_HMT_757 GCA_009730315.1 HMT-046 FDAARGOS_741 Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum FDAARGOS_741 1 1779451 30.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/315/GCA_009730315.1_ASM973031v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJNA231221 29391 SAMN11056456 ASM973031v1 Complete Genome canu v. 1.4 2019-03-05T13:52:07.700 USA:VA expectorated sputum Pacbio; Illumina US Food and Drug Administration 1742.6x 98.2 98.56 0 100 0.39 GCF_009730315.1 1615 1698 1698 28 12 42 1 Gemella_morbillorum_homd_HMT_046 GCA_009730335.1 HMT-710 FDAARGOS_732 Named NVP Cultivated Oral (Abundance: Medium) HMT-710 Schaalia dentiphila FDAARGOS_732 1 2432635 65.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/335/GCA_009730335.1_ASM973033v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia dentiphila PRJNA231221 1660 SAMN11056447 ASM973033v1 Complete Genome canu v. 1.4 2019-03-05T13:52:07.530 USA:VA human oral cavity Pacbio; Illumina US Food and Drug Administration 1020.9x 87.95 100 0.71 100 0.09 GCF_009730335.1 2044 2112 2112 10 9 48 1 Schaalia_dentiphila_homd_HMT_710 GCA_009730375.1 HMT-329 FDAARGOS_737 Named Cultivated Oral (Abundance: High) HMT-329 Capnocytophaga leadbetteri FDAARGOS_737 1 2652717 40.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/375/GCA_009730375.1_ASM973037v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga leadbetteri PRJNA231221 2545799 SAMN11056452 ASM973037v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:07.623 USA:VA human oral cavity Pacbio; Illumina US Food and Drug Administration 1442.0x 99.05 0.24 99.96 0.09 GCF_009730375.1 2349 2416 2416 9 8 49 1 Capnocytophaga_leadbetteri_homd_HMT_329 GCA_009730515.1 HMT-677 FDAARGOS_684 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis FDAARGOS_684 1 1868857 40.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/515/GCA_009730515.1_ASM973051v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA231221 28037 SAMN11056399 ASM973051v1 Complete Genome canu v. 1.4 2019-03-05T13:52:06.650 USA:VA Unknown Pacbio; Illumina US Food and Drug Administration 2147.8x 99.99 99.42 0.2 99.99 0.01 GCF_009730515.1 1720 1842 1842 48 12 61 1 Streptococcus_mitis_homd_HMT_677 GCA_009730535.1 HMT-622 FDAARGOS_683 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii FDAARGOS_683 1 2196595 40.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/535/GCA_009730535.1_ASM973053v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA231221 1302 SAMN11056398 ASM973053v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:06.630 USA:VA Unknown Pacbio; Illumina US Food and Drug Administration 2138.2x 95.48 100 0 100 0.14 GCF_009730535.1 2052 2150 2150 26 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_009730635.1 HMT-825 N843_15 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-825 Listeria monocytogenes N843_15 1 2896666 37.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/635/GCA_009730635.1_ASM973063v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes PRJNA590892 1639 SAMN13341946 ASM973063v1 Complete Genome PacBio SMRT analysis v. 2.3.0 2019-11-21T09:37:03.666 Switzerland: Zurich septic hip prosthetic joint fluid PacBio University of Zurich, Vetsuisse Faculty 177.0x 98.96 99.45 0.27 99.99 0.85 GCF_009730635.1 2802 2989 2989 100 18 68 1 Listeria_monocytogenes_homd_HMT_825 GCA_009732795.1 HMT-153 Y6 Named Cultivated Nasal (Abundance: Medium) HMT-153 Klebsiella aerogenes Y6 1 5266224 54.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/732/795/GCA_009732795.1_ASM973279v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella aerogenes PRJNA575098 548 SAMN12877719 ASM973279v1 Complete Genome SPAdes v. 3.11 2019-09-30T23:59:05.140 South Korea missing PacBio RSII Yonsei university college of medicine 120.0x 99.05 99.9 0.65 100 2.46 GCF_009732795.1 4907 5022 0 0 25 89 1 Klebsiella_aerogenes_homd_HMT_153 GCA_009734165.1 HMT-968 FDAARGOS_733 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-968 Bacteroides ovatus FDAARGOS_733 1 6571392 41.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/734/165/GCA_009734165.1_ASM973416v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus PRJNA231221 28116 SAMN11056448 ASM973416v1 Complete Genome canu v. 1.4 2019-03-05T13:52:07.550 USA:VA inflamed biopsy tissue from sigmoid colon Pacbio; Illumina US Food and Drug Administration 658.3x 97.23 99.46 0 99.99 0.8 GCF_009734165.1 5076 5182 5182 18 16 71 1 Bacteroides_ovatus_homd_HMT_968 GCA_009735755.1 HMT-841 M1-70 Named Cultivated Vaginal (Abundance: Medium) HMT-841 Megasphaera lornae M1-70 112 1774475 46.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/735/755/GCA_009735755.1_ASM973575v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera_C;s__Megasphaera_C lornae PRJNA46877 2093853 SAMN08434424 ASM973575v1 Contig Newbler v. 2.8 2018-01-29T17:02:06.897 USA:Virginia mid-vaginal wall 454 Virginia Commonwealth University 12.0x 100 0.47 95.9 0.06 GCF_009735755.1 PTJT01 1514 1607 1607 23 17 52 1 Megasphaera_lornae_homd_HMT_841 GCA_009738105.1 HMT-686 NCH105 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NCH105 3 2028032 36.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/738/105/GCA_009738105.1_ASM973810v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA573065 1309 SAMN12797732 ASM973810v1 Complete Genome SPAdes v. 3.9.0 2019-09-20T12:18:03.573 USA:Charlotte Illumina MiSeq; Oxford Nanopore MiniION UConn Health 175.0x 99.32 100 0 100 0.06 GCF_009738105.1 1887 2010 2010 42 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_009738205.1 HMT-755 ICDC1 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius ICDC1 1 2193178 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/738/205/GCA_009738205.1_ASM973820v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA355044 1304 SAMN06066182 ASM973820v1 Complete Genome SMRT porta v. 2.3.0 2016-11-28T20:17:05.113 China:Changping, Beijing 4-6 years old child with healthy oral PacBio RSII National Institute for Communicable Disease Control and Prevention, China CDC 232.0x 95.99 99.83 0.15 99.99 0.57 GCF_009738205.1 1974 2109 2109 48 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_009738225.1 HMT-755 ICDC2 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius ICDC2 2 2442990 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/738/225/GCA_009738225.1_ASM973822v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA355056 1304 SAMN06066184 ASM973822v1 Complete Genome SMRT porta v. 2.3.0 2016-11-28T20:31:04.976 China:Changping, Beijing 4-6 years old child with healthy oral PacBio RSII National Institute for Communicable Disease Control and Prevention, China CDC 232.0x 95.1 99.56 1.12 100 0.16 GCF_009738225.1 2221 2344 2344 36 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_009738245.1 HMT-755 ICDC3 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius ICDC3 1 2193173 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/738/245/GCA_009738245.1_ASM973824v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA355057 1304 SAMN06066191 ASM973824v1 Complete Genome SMRT porta v. 2.3.0 2016-11-28T21:04:05.260 China:Changping, Beijing 4-6 years old child with healthy oral PacBio RSII National Institute for Communicable Disease Control and Prevention, China CDC 501.0x 95.98 99.65 0.15 99.97 0.59 GCF_009738245.1 1976 2111 2111 48 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_009739355.1 HMT-118 P2A-1 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus P2A-1 1 1894694 45.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/739/355/GCA_009739355.1_ASM973935v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA508395 218538 SAMN10723579 ASM973935v1 Contig Canu v. 1.7 2019-01-10T15:21:04.383 not applicable human stool Oxford Nanopore MiniION Stanford University 55.0x 97.74 96.52 1.58 100 2.05 GCF_009739355.1 SCPI01 1791 1907 1907 50 12 53 1 Dialister_invisus_homd_HMT_118 GCA_009755665.1 HMT-717 CSUSB Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-717 Variovorax paradoxus CSUSB 1 5574400 65.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/755/665/GCA_009755665.1_ASM975566v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax;s__Variovorax paradoxus_G PRJNA593854 34073 SAMN13494298 ASM975566v1 Complete Genome Unicycler-Hybrid v. 0.4.8.0 2019-12-05T17:36:07.613 USA:California,Cal State San B Soil, Lower Chaparral/ Coastal Sage Brush Oxford Nanopore & Illumina Cal State San Bernardino 89.17 100 0 100 0.01 GCF_009755665.1 5131 5221 5221 24 6 59 1 Variovorax_paradoxus_homd_HMT_717 GCA_009759685.1 HMT-554 ATCC 19606 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-554 Acinetobacter baumannii ATCC 19606 2 3990388 39.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/759/685/GCA_009759685.1_ASM975968v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii PRJNA577968 470 SAMN13045090 ASM975968v1 Complete Genome HGAP v. 3 2019-10-16T20:13:04.823 Australia:Melbourne missing PacBio RSII Monash University 170.0x 99.99 99.63 0 100 0.13 GCF_009759685.1 3721 3854 3854 41 18 73 1 Acinetobacter_baumannii_homd_HMT_554 GCA_009761735.1 HMT-659 R7A Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-659 Mesorhizobium japonicum R7A 1 6529994 62.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/761/735/GCA_009761735.1_ASM976173v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium japonicum PRJNA496338 935547 SAMN02597167 ASM976173v1 Complete Genome Flye v. 2.3.5; Unicycler v. 0.4.6; SPAdes v. 3.12 2014-01-27T12:23:41.220 New Zealand Illumina HiSeq; Oxford Nanopore MinION University of Otago 98.63 99.92 0.41 100 0 GCF_009761735.1 6230 6295 0 0 6 58 1 Mesorhizobium_japonicum_homd_HMT_659 GCA_009771075.1 HMT-924 Y2624 Named NVP Uncultivated Vaginal (Abundance: Scarce) HMT-924 Lachnocurva vaginae Y2624 28 1603810 31.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/771/075/GCA_009771075.1_ASM977107v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA629;s__UBA629 sp005465875 PRJNA562728 699240 SAMN12691779 ASM977107v1 Contig SPAdes v. 3.13.0 2019-09-04T11:36:07.836 USA: Birmingham, Alabama cervicovaginal lavage Illumina HiSeq University of Maryland Baltimore 1841.0x 75.24 0 97.98 0.48 WNXV01 1444 1504 1504 14 4 41 1 Lachnocurva_vaginae_homd_HMT_924 GCA_009771085.1 HMT-924 Y3255 Named NVP Uncultivated Vaginal (Abundance: Scarce) HMT-924 Lachnocurva vaginae Y3255 42 1584131 31.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/771/085/GCA_009771085.1_ASM977108v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA629;s__UBA629 sp005465875 PRJNA562728 699240 SAMN12691778 ASM977108v1 Scaffold SPAdes v. 3.13.0 2019-09-04T11:36:07.820 USA: Birmingham, Alabama cervicovaginal lavage Illumina HiSeq University of Maryland Baltimore 1973.0x 76.05 0 97.62 1.4 WNXU01 1415 1470 1470 14 3 37 1 Lachnocurva_vaginae_homd_HMT_924 GCA_009771115.1 HMT-924 Y2694 Named NVP Uncultivated Vaginal (Abundance: Scarce) HMT-924 Lachnocurva vaginae Y2694 27 1515592 31.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/771/115/GCA_009771115.1_ASM977111v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA629;s__UBA629 sp005465875 PRJNA562728 699240 SAMN12691780 ASM977111v1 Scaffold SPAdes v. 3.13.0 2019-09-04T11:36:07.856 USA: Birmingham, Alabama cervicovaginal lavage Illumina HiSeq University of Maryland Baltimore 1756.0x 73.09 0 98.69 0.25 WNXW01 1366 1412 1412 14 2 29 1 Lachnocurva_vaginae_homd_HMT_924 GCA_009771145.1 HMT-924 Y2266 Named NVP Uncultivated Vaginal (Abundance: Scarce) HMT-924 Lachnocurva vaginae Y2266 21 1480353 31.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/771/145/GCA_009771145.1_ASM977114v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA629;s__UBA629 sp005465875 PRJNA562728 699240 SAMN12691776 ASM977114v1 Scaffold SPAdes v. 3.13.0 2019-09-04T11:36:07.783 USA: Birmingham, Alabama cervicovaginal lavage Illumina HiSeq University of Maryland Baltimore 3706.0x 72.34 0 92.02 0.6 WNXS01 1317 1365 1365 14 2 31 1 Lachnocurva_vaginae_homd_HMT_924 GCA_009789555.1 HMT-477 PM101005 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-477 Stutzerimonas stutzeri PM101005 2 4948328 61.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/789/555/GCA_009789555.1_ASM978955v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;s__Stutzerimonas stutzeri_R PRJNA595440 316 SAMN13555502 ASM978955v1 Complete Genome HGAP v. 3 2019-12-12T23:34:03.840 South Korea: Daejeon particulate matter PacBio RSII; Illumina HiSeq Korea Research Institute of Bioscience and Biotechnology 206.0x 82.95 100 0.96 100 0.98 GCF_009789555.1 4595 4717 4717 48 12 61 1 Stutzerimonas_stutzeri_homd_HMT_477 GCA_009791315.1 HMT-120 SDF1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SDF1 24 2477199 32.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/791/315/GCA_009791315.1_ASM979131v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA552487 1283 SAMN13560664 ASM979131v1 Contig SPAdes v. October 2019 2019-12-13T13:52:03.620 USA: New Mexico, Sevilleta Des desert soil Illumina HiSeq University of New Hampshire 77.0x 97.39 99.39 0 100 0.03 GCF_009791315.1 WSYI01 2404 2549 2549 77 8 59 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_009811895.1 HMT-342 TCA1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-342 Novosphingobium panipatense TCA1 136 6173804 64.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/811/895/GCA_009811895.1_ASM981189v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium;s__Novosphingobium panipatense_A PRJDB9061 2682474 SAMD00197004 ASM981189v1 Contig SPAdes v. 3.12.0 2019-12-10T01:01:30.543 not applicable Hiseq2500 Laboratory of Life Sciences for Extremophiles, Life Sciences, Toyo University 184.4x 99.82 3.01 100 0.86 GCF_009811895.1 BLJH01 5602 5691 5691 31 3 54 1 Novosphingobium_panipatense_homd_HMT_342 GCA_009828055.1 HMT-747 JCM 10282 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-747 Erythrobacter ramosus JCM 10282 10 3240350 64.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/828/055/GCA_009828055.1_ASM982805v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter;s__Erythrobacter ramosus PRJNA481858 35811 SAMN13631596 ASM982805v1 Scaffold SPAdes v. 3.11.1 2019-12-19T00:55:05.713 Netherlands: West Frisian isla Illumina HiSeq Zhejiang Sci-Tech University 202.0x 99.99 99.54 1.06 99.99 0.07 GCF_009828055.1 WTYB01 3078 3133 3133 7 3 44 1 Erythrobacter_ramosus_homd_HMT_747 GCA_009857205.1 HMT-838 Indica1 Named Cultivated Vaginal (Abundance: High) HMT-838 Lactobacillus iners Indica1 1 1331119 33.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/857/205/GCA_009857205.1_ASM985720v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners PRJNA599052 147802 SAMN13738159 ASM985720v1 Contig GS De Novo Assembler v. 2.5.3 2020-01-06T02:44:03.640 India high vaginal swabs Illumina HiSeq Translational Health Science and Technology Institute 50.0x 98.81 99.41 0.44 99.96 0.1 GCF_009857205.1 WWFC01 1241 1357 1357 27 18 70 1 Lactobacillus_iners_homd_HMT_838 GCA_009897275.1 HMT-127 APC 3824 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis APC 3824 33 2292997 31.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/897/275/GCA_009897275.1_ASM989727v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA521309 1290 SAMN10929329 ASM989727v1 Contig SPAdes v. 3.10.0 2019-02-14T07:24:05.447 Ireland: Cork milk Illumina HiSeq University College Cork 39.2x 99.15 99.38 1.16 99.98 0.14 GCF_009897275.1 SHFC01 2215 2341 2341 57 9 59 1 Staphylococcus_hominis_homd_HMT_127 GCA_009909445.1 HMT-153 HNHF1 Named Cultivated Nasal (Abundance: Medium) HMT-153 Klebsiella aerogenes HNHF1 2 5487999 54.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/909/445/GCA_009909445.1_ASM990944v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella aerogenes PRJNA600670 548 SAMN13829509 ASM990944v1 Complete Genome Unicycler v. V0.4.4 2020-01-12T03:21:04.766 China: HeNan chicken manure Oxford Nanopore MiniION; Illumina-Hiseq Yangzhou University 100.0x 99.38 100 0.25 100 0.11 GCF_009909445.1 5092 5339 5339 132 25 89 1 Klebsiella_aerogenes_homd_HMT_153 GCA_009912075.1 HMT-550 UP_1654 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus UP_1654 2 2892590 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/912/075/GCA_009912075.1_ASM991207v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA528186 1280 SAMN11175645 ASM991207v1 Complete Genome Unicycler Hybrid Assembly v. 0.4.8 2019-03-20T07:47:06.663 missing missing Illumina MiSeq / Oxford Nanopore MiniION University Hospital Duesseldorf 97.89 99.49 0.28 100 0.13 GCF_009912075.1 2692 2896 2896 124 19 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_009912295.1 HMT-550 UP_1539 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus UP_1539 1 2746804 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/912/295/GCA_009912295.1_ASM991229v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA528186 1280 SAMN11175639 ASM991229v1 Complete Genome Unicycler Hybrid Assembly v. 0.4.8 2019-03-20T07:47:06.570 missing missing Illumina MiSeq / Oxford Nanopore MiniION University Hospital Duesseldorf 99.11 99.41 0.08 100 0.17 GCF_009912295.1 2508 2704 2704 117 16 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_009912415.1 HMT-550 UP_1484 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus UP_1484 2 2712116 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/912/415/GCA_009912415.1_ASM991241v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA528186 1280 SAMN11175636 ASM991241v1 Complete Genome Unicycler Hybrid Assembly v. 0.4.8 2019-03-20T07:47:06.520 missing missing Illumina MiSeq / Oxford Nanopore MiniION University Hospital Duesseldorf 99.11 99.41 0.08 100 0.12 GCF_009912415.1 2444 2642 2642 116 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_009912715.1 HMT-550 UP_818 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus UP_818 1 2896381 32.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/912/715/GCA_009912715.1_ASM991271v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA528186 1280 SAMN11175617 ASM991271v1 Complete Genome Unicycler Hybrid Assembly v. 0.4.8 2019-03-20T07:47:06.223 missing missing Illumina MiSeq / Oxford Nanopore MiniION University Hospital Duesseldorf 97.86 99.51 0.22 100 0.74 GCF_009912715.1 2730 2933 2933 123 19 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_009912935.1 HMT-550 UP_551 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus UP_551 1 2840057 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/912/935/GCA_009912935.1_ASM991293v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA528186 1280 SAMN11175609 ASM991293v1 Complete Genome Unicycler Hybrid Assembly v. 0.4.8 2019-03-20T07:47:05.916 missing missing Illumina MiSeq / Oxford Nanopore MiniION University Hospital Duesseldorf 98.86 99.51 0.08 100 0.11 GCF_009912935.1 2638 2844 2844 128 16 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_009914785.1 HMT-718 COPD-014-E1 O Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae COPD-014-E1 O 187 2127067 39.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/914/785/GCA_009914785.1_ASM991478v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AE PRJNA562164 729 SAMN12635205 ASM991478v1 Contig SPAdes v. 3.11.1 2019-08-26T09:19:04.446 Netherlands:Utrecht sputum Illumina NextSeq UMCU 435.0x 95.13 99.89 0.18 100 1.3 GCF_009914785.1 VTSN01 1966 2054 2054 38 6 43 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_009931395.1 HMT-128 APC 3758 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis APC 3758 1 2570129 33.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/931/395/GCA_009931395.1_ASM993139v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA521309 28035 SAMN11338654 ASM993139v1 Complete Genome Flye v. 2.4.1 2019-04-04T06:36:04.870 Ireland: Cork human milk PacBio University College Cork 398.0x 99.45 99.04 0 100 0.07 GCF_009931395.1 2393 2558 2558 84 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_009932715.2 HMT-120 SE2.14 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SE2.14 6 2396041 32.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/932/715/GCA_009932715.2_ASM993271v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA263225 1283 SAMN03097234 ASM993271v2 Complete Genome Unicycler v. v0.4.8 2014-10-06T07:58:33.577 India Rice seed Oxford Nanopore MinION; Illumina MiSeq CSIR-Institute of Microbial Technology 52.0x 97.1 99.62 0.71 99.97 0.1 GCF_009932715.2 2294 2453 2453 79 19 60 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_009932775.1 HMT-758 OH0843 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis OH0843 3 2454705 43.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/932/775/GCA_009932775.1_ASM993277v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_R PRJNA192961 1304891 SAMN13850658 ASM993277v1 Contig HGAp v. 0.2 of 2012/11/06; Celera v. 2012/11/06 2020-01-14T11:05:07.704 PacBio University of California, Davis, School of Veterinary Medicine 50.0x 94.99 100 0 100 0.12 GCF_009932775.1 APLR01 2362 2469 2469 32 13 61 1 Streptococcus_sanguinis_homd_HMT_758 GCA_009932885.2 HMT-120 SE3.8 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SE3.8 6 2396207 32.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/932/885/GCA_009932885.2_ASM993288v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA263226 1283 SAMN03097235 ASM993288v2 Complete Genome Unicycler v. v0.4.8 2014-10-06T07:58:33.657 India Rice seed Oxford Nanopore MinION; Illumina MiSeq CSIR-Institute of Microbial Technology 46.0x 97.1 99.62 0.71 99.97 0.1 GCF_009932885.2 2292 2454 2454 79 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_009932935.2 HMT-120 SE3.9 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SE3.9 6 2396096 32.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/932/935/GCA_009932935.2_ASM993293v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA263227 1283 SAMN03097236 ASM993293v2 Complete Genome unicycler v. v0.4.8-beta 2014-10-06T07:58:33.703 India Rice seed Oxford Nanopore MiniION; Illumina MiSeq CSIR-Institute of Microbial Technology 57.0x 97.1 99.62 0.71 99.97 0.1 GCF_009932935.2 2297 2457 2457 79 19 61 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_009939745.1 HMT-732 16-734 Named Cultivated Pathogen (Abundance: Scarce) HMT-732 Mycoplasmoides pneumoniae 16-734 1 818445 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/939/745/GCA_009939745.1_ASM993974v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pneumoniae PRJNA533936 2104 SAMN11472224 ASM993974v1 Complete Genome SPAdes v. 3.13.0 2019-04-21T02:38:05.896 South Korea: Seoul nasophraynx Illumina MiSeq Chungbuk National University Hospital 1.0x 99.92 99.22 0 98.81 0.11 GCF_009939745.1 1405 1448 1448 2 3 37 1 Mycoplasmoides_pneumoniae_homd_HMT_732 GCA_009945165.1 HMT-732 11-129 Named Cultivated Pathogen (Abundance: Scarce) HMT-732 Mycoplasmoides pneumoniae 11-129 1 816432 40.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/945/165/GCA_009945165.1_ASM994516v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pneumoniae PRJNA533936 2104 SAMN11472203 ASM994516v1 Complete Genome SPAdes v. 3.13.0 2019-04-21T02:38:05.540 South Korea: Seoul nasophraynx Illumina MiSeq Chungbuk National University Hospital 1.0x 99.73 99.25 0 98.81 0.11 GCF_009945165.1 1390 1433 1433 2 3 37 1 Mycoplasmoides_pneumoniae_homd_HMT_732 GCA_009946845.1 HMT-732 10-1213 Named Cultivated Pathogen (Abundance: Scarce) HMT-732 Mycoplasmoides pneumoniae 10-1213 1 816521 40.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/946/845/GCA_009946845.1_ASM994684v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pneumoniae PRJNA533936 2104 SAMN11472199 ASM994684v1 Complete Genome SPAdes v. 3.13.0 2019-04-21T02:38:05.476 South Korea: Seoul nasophraynx Illumina MiSeq Chungbuk National University Hospital 1.0x 99.74 99.25 0 99.09 0.11 GCF_009946845.1 1393 1436 1436 2 3 37 1 Mycoplasmoides_pneumoniae_homd_HMT_732 GCA_010120595.1 HMT-152 ATCC 19258 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-152 Streptococcus thermophilus ATCC 19258 1 2102268 39.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/120/595/GCA_010120595.1_ASM1012059v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus PRJNA528156 1308 SAMN11175069 ASM1012059v1 Complete Genome De novo assembly v. HGAP3 2019-03-20T02:20:03.556 USA missing PacBio RSII Pusan National University 342.0x 99.98 99.89 0.4 99.98 0.22 GCF_010120595.1 2246 2416 2416 98 15 56 1 Streptococcus_thermophilus_homd_HMT_152 GCA_010201925.1 HMT-955 FS17P Unnamed Cultivated in coculture Oral (Abundance: Scarce) HMT-955 Saccharimonas sicarius FS17P 1 885960 46.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/201/925/GCA_010201925.1_ASM1020192v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp010202265 PRJNA282954 2572087 SAMN13876983 ASM1020192v1 Complete Genome HGAP v. 3 2020-01-17T09:44:07.003 USA: Cambridge, Massachusetts oral cavity PacBio RS II The Forsyth Institute 540.0x 64.97 4.09 99.15 2.43 GCF_010201925.1 900 955 955 5 3 47 0 Saccharimonas_sicarius_homd_HMT_955 GCA_010202115.1 HMT-488 FS15P Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur FS15P 1 931438 50.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/202/115/GCA_010202115.1_ASM1020211v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp010202115 PRJNA282954 713059 SAMN13876982 ASM1020211v1 Complete Genome HGAP v. 3 2020-01-17T09:44:06.983 USA: Cambridge, Massachusetts oral cavity PacBio RS II The Forsyth Institute 291.0x 63.68 0.85 99.97 0.18 GCF_010202115.1 981 1033 1033 5 3 44 0 Nanosynbacter_fur_homd_HMT_488 GCA_010202265.1 HMT-955 FS14P Unnamed Cultivated in coculture Oral (Abundance: Scarce) HMT-955 Saccharimonas sicarius FS14P 1 873056 46.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/202/265/GCA_010202265.1_ASM1020226v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp010202265 PRJNA282954 2572087 SAMN13876981 ASM1020226v1 Complete Genome HGAP v. 3 2020-01-17T09:44:06.966 USA: Cambridge, Massachusetts oral cavity PacBio RS II The Forsyth Institute 273.0x 64.04 2.78 97.33 0.95 GCF_010202265.1 885 937 937 5 3 44 0 Saccharimonas_sicarius_homd_HMT_955 GCA_010202465.1 HMT-488 FS13P Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur FS13P 1 831234 50.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/202/465/GCA_010202465.1_ASM1020246v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp010202465 PRJNA282954 713059 SAMN13876980 ASM1020246v1 Complete Genome HGAP v. 3 2020-01-17T09:44:06.943 USA: Cambridge, Massachusetts oral cavity PacBio RS II The Forsyth Institute 274.0x 63.68 4.27 98.82 1.21 GCF_010202465.1 879 930 930 5 3 43 0 Nanosynbacter_fur_homd_HMT_488 GCA_010202645.1 HMT-488 FS07P Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur FS07P 1 848784 50.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/202/645/GCA_010202645.1_ASM1020264v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp010202645 PRJNA282954 713059 SAMN13876979 ASM1020264v1 Complete Genome HGAP v. 3 2020-01-17T09:44:06.923 USA: Cambridge, Massachusetts oral cavity PacBio RS II The Forsyth Institute 283.0x 62.82 0.85 97.81 0.19 GCF_010202645.1 870 922 922 5 3 44 0 Nanosynbacter_fur_homd_HMT_488 GCA_010202845.1 HMT-488 FS05P-B Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur FS05P-B 1 853179 50.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/202/845/GCA_010202845.1_ASM1020284v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp010202845 PRJNA282954 713059 SAMN13876978 ASM1020284v1 Complete Genome HGAP v. 3 2020-01-17T09:44:06.896 USA: Cambridge, Massachusetts oral cavity PacBio RS II The Forsyth Institute 241.0x 63.68 2.56 99.82 0.08 GCF_010202845.1 858 909 909 5 3 43 0 Nanosynbacter_fur_homd_HMT_488 GCA_010223175.1 HMT-963 EB-AMDK-34 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-963 Akkermansia muciniphila EB-AMDK-34 1 2724277 55.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/223/175/GCA_010223175.1_ASM1022317v1 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila PRJNA434607 239935 SAMN08565499 ASM1022317v1 Complete Genome HGAP v. 3.0 2018-02-19T20:36:02.953 South Korea: Seoul Korean adult feces PacBio Korea Food Research Institute 228.9x 97.61 97.73 0 100 0.24 GCF_010223175.1 2237 2306 2306 5 9 54 1 Akkermansia_muciniphila_homd_HMT_963 GCA_010223255.1 HMT-963 EB-AMDK-35 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-963 Akkermansia muciniphila EB-AMDK-35 1 2724313 55.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/223/255/GCA_010223255.1_ASM1022325v1 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila PRJNA434608 239935 SAMN08565500 ASM1022325v1 Complete Genome HGAP v. 3.0 2018-02-19T20:43:03.547 South Korea: Seoul Korean adult feces PacBio Korea Food Research Institute 74.0x 97.62 97.96 0 99.99 0.22 GCF_010223255.1 2253 2322 2322 5 9 54 1 Akkermansia_muciniphila_homd_HMT_963 GCA_010365865.1 HMT-432 OMZ 804 Named Cultivated Oral (Abundance: Medium) HMT-432 Treponema vincentii clade-432 OMZ 804 1 2980180 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/365/865/GCA_010365865.1_ASM1036586v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema sp010365865 PRJNA602574 69710 SAMN11253843 ASM1036586v1 Complete Genome Canu v. 1.8 2019-03-26T03:32:04.780 Switzerland subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 260.0x 99.19 0 96.07 2.05 GCF_010365865.1 2891 2959 0 12 6 49 1 Treponema_vincentii_HMT_029_432 GCA_010365865.1 HMT-432 OMZ 804 Named Cultivated Oral (Abundance: Medium) HMT-432 Treponema vincentii clade-432 OMZ 804 1 2980180 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/365/865/GCA_010365865.1_ASM1036586v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema sp010365865 PRJNA602574 69710 SAMN11253843 ASM1036586v1 Complete Genome Canu v. 1.8 2019-03-26T03:32:04.780 Switzerland subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 260.0x 99.19 0 96.07 2.05 GCF_010365865.1 2891 2959 0 12 6 49 1 Treponema_vincentii_clade_432_homd_HMT_432 GCA_010586925.1 HMT-819 G2A Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-819 Lactobacillus johnsonii G2A 3 2177933 34.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/586/925/GCA_010586925.1_ASM1058692v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus sp910589675 PRJNA542320 33959 SAMN11618738 ASM1058692v1 Complete Genome FALCON v. 6 2019-05-10T10:31:06.790 USA PacBio Sequel University of Alabama at Birmingham 690.0x 96.6 99.11 0.78 99.99 0.43 GCF_010586925.1 2045 2253 2253 69 30 108 1 Lactobacillus_johnsonii_homd_HMT_819 GCA_010748955.1 HMT-838 KY Named Cultivated Vaginal (Abundance: High) HMT-838 Lactobacillus iners KY 1 1339101 33.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/748/955/GCA_010748955.1_ASM1074895v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners PRJNA603871 147802 SAMN13943229 ASM1074895v1 Complete Genome Guppy v. 3.4.3; Porechop v. 0.2.4; CANU v. 1.8; Racon v. 1.4.3; rebaler v. 0.2.0; medaka v. 0.11.5; 2020-01-30T01:20:10.899 South Korea:Daejeon Oxford Nanopore Flongle Seoul National Univerisity 165.9x 98.79 98.03 0.44 94.53 2.57 GCF_010748955.1 1352 1463 1463 22 18 70 1 Lactobacillus_iners_homd_HMT_838 GCA_011032745.1 HMT-608 AGR1487 Named Cultivated Oral (Abundance: Scarce) HMT-608 Limosilactobacillus fermentum AGR1487 1 1939032 52.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/032/745/GCA_011032745.1_ASM1103274v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus fermentum PRJNA596816 1613 SAMN13639333 ASM1103274v1 Complete Genome Unicycler v. v0.4.7 2019-12-19T17:55:02.983 New Zealand: Palmerston north Oral cavity PacBio Sequel; Illumina HiSeq 2000 Riddet Institute 1510.5x 97.82 99.18 0.55 100 0.08 GCF_011032745.1 1914 2020 2020 30 15 60 1 Limosilactobacillus_fermentum_homd_HMT_608 GCA_011038575.1 HMT-601 E73 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis E73 1 2449132 32.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/038/575/GCA_011038575.1_ASM1103857v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA518762 1282 SAMN10857478 ASM1103857v1 Complete Genome HGAP4 v. 2018 2019-02-01T08:01:04.286 Germany PacBio Sequel; Illumina MiSeq Statens Serum Institut 403.1x 99.32 99.81 0.56 99.98 0.06 GCF_011038575.1 2229 2383 2383 77 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_011045235.1 HMT-574 PapM-32-1 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-574 Escherichia coli PapM-32-1 1 4866137 50.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/045/235/GCA_011045235.1_ASM1104523v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli PRJNA604701 562 SAMN13978645 ASM1104523v1 Complete Genome Hybrid v. 0.4.8.0 2020-02-04T07:21:06.036 Gambia stool Oxford Nanopore MiniION Quadram Institute Biosciences 1.0x 98.56 99.97 0.04 100 0.23 GCF_011045235.1 4419 4793 4793 264 22 87 1 Escherichia_coli_homd_HMT_574 GCA_011045755.1 HMT-646 F41215CHC Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae F41215CHC 1 2014880 46.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/045/755/GCA_011045755.1_ASM1104575v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA577516 504 SAMN13028224 ASM1104575v1 Complete Genome Flye v. 2.4.2 2019-10-15T00:09:03.373 New Zealand: Christchurch Illumina MiSeq; Oxford Nanopore GridION Canterbury Health Laboratories 290.0x 98.5 98.98 0.23 100 0.08 GCF_011045755.1 2040 2121 2121 14 12 54 1 Kingella_kingae_homd_HMT_646 GCA_011058695.1 HMT-838 C0094A1 Named Cultivated Vaginal (Abundance: High) HMT-838 Lactobacillus iners C0094A1 2 1474256 33.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/058/695/GCA_011058695.1_ASM1105869v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners PRJNA608123 147802 SAMN14165698 ASM1105869v1 Complete Genome Canu v. 1.8 2020-02-22T14:40:06.243 USA: Baltimore Mid-vagina PacBio Sequel II University of Maryland Baltimore 2000.0x 98.66 99.41 0.44 99.98 0.09 GCF_011058695.1 1332 1446 1446 25 18 70 1 Lactobacillus_iners_homd_HMT_838 GCA_011058715.1 HMT-838 C0059G1 Named Cultivated Vaginal (Abundance: High) HMT-838 Lactobacillus iners C0059G1 1 1379123 33.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/058/715/GCA_011058715.1_ASM1105871v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners PRJNA608123 147802 SAMN14165697 ASM1105871v1 Complete Genome Canu v. 1.8 2020-02-22T14:40:06.226 USA: Baltimore Mid-vagina PacBio Sequel II University of Maryland Baltimore 2000.0x 98.62 99.41 0.44 99.95 0.03 GCF_011058715.1 1265 1382 1382 26 18 72 1 Lactobacillus_iners_homd_HMT_838 GCA_011058735.1 HMT-838 C0011D1 Named Cultivated Vaginal (Abundance: High) HMT-838 Lactobacillus iners C0011D1 2 1503611 33.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/058/735/GCA_011058735.1_ASM1105873v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners PRJNA608123 147802 SAMN14165696 ASM1105873v1 Complete Genome Canu v. 1.8 2020-02-22T14:40:06.210 USA: Baltimore Mid-vagina PacBio Sequel II University of Maryland Baltimore 2000.0x 98.64 99.41 0.44 99.99 0.14 GCF_011058735.1 1398 1516 1516 29 18 70 1 Lactobacillus_iners_homd_HMT_838 GCA_011058755.1 HMT-838 C0210C1 Named Cultivated Vaginal (Abundance: High) HMT-838 Lactobacillus iners C0210C1 2 1507452 33.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/058/755/GCA_011058755.1_ASM1105875v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners PRJNA608123 147802 SAMN14165695 ASM1105875v1 Complete Genome Canu v. 1.8 2020-02-22T14:40:06.190 USA: Baltimore Mid-vagina PacBio Sequel II University of Maryland Baltimore 2000.0x 98.72 99.41 0.44 99.97 0.1 GCF_011058755.1 1362 1475 1475 24 18 70 1 Lactobacillus_iners_homd_HMT_838 GCA_011058775.1 HMT-838 C0322A1 Named Cultivated Vaginal (Abundance: High) HMT-838 Lactobacillus iners C0322A1 1 1318700 33.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/058/775/GCA_011058775.1_ASM1105877v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners PRJNA608123 147802 SAMN14165694 ASM1105877v1 Complete Genome Canu v. 1.8 2020-02-22T14:40:06.173 USA: Baltimore Mid-vagina PacBio Sequel II University of Maryland Baltimore 2000.0x 98.87 99.41 0.44 99.78 0.06 GCF_011058775.1 1203 1315 1315 23 18 70 1 Lactobacillus_iners_homd_HMT_838 GCA_011058795.1 HMT-838 C0254C1 Named Cultivated Vaginal (Abundance: High) HMT-838 Lactobacillus iners C0254C1 1 1314822 33.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/058/795/GCA_011058795.1_ASM1105879v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners PRJNA608123 147802 SAMN14165693 ASM1105879v1 Complete Genome Canu v. 1.8 2020-02-22T14:40:06.150 USA: Baltimore Mid-vagina PacBio Sequel II University of Maryland Baltimore 2000.0x 98.97 99.41 0.44 99.92 0.06 GCF_011058795.1 1230 1341 1341 25 15 70 1 Lactobacillus_iners_homd_HMT_838 GCA_011082265.1 HMT-924 UAB071 Named NVP Uncultivated Vaginal (Abundance: Scarce) HMT-924 Lachnocurva vaginae UAB071 1 1649642 31.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/082/265/GCA_011082265.1_ASM1108226v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA629;s__UBA629 sp005465875 PRJNA562728 699240 SAMN12648934 ASM1108226v1 Complete Genome Canu v. 1.7 2019-08-28T16:22:14.126 USA: Birmingham, Alabama vagina PacBio Sequel II University of Maryland Baltimore 2247.0x 76.21 0 98.31 0.34 1490 1555 1555 14 8 42 1 Lachnocurva_vaginae_homd_HMT_924 GCA_011137195.1 HMT-233 ATCC 43808 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-233 Staphylococcus schleiferi ATCC 43808 88 2469638 35.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/137/195/GCA_011137195.1_ASM1113719v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus schleiferi PRJNA429276 1295 SAMN08334924 ASM1113719v1 Contig GS De Novo Assembler v. 11.0.4 2018-01-09T19:17:13.230 USA Illumina MiSeq University of Tennessee 250.0x 99.93 99.43 0.28 100 0 GCF_011137195.1 POVK01 2295 2435 2435 73 8 58 1 Staphylococcus_schleiferi_homd_HMT_233 GCA_011397855.1 HMT-834 MrB4 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-834 Pseudomonas otitidis MrB4 1 6089454 67.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/397/855/GCA_011397855.1_ASM1139785v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas;s__Metapseudomonas otitidis PRJDB9285 319939 SAMD00204525 ASM1139785v1 Complete Genome Unicycler v. 0.4.8 2020-02-03T13:06:41.640 Japan:shiga, Lake Biwa MiSeq; GridION National Institute of Advanced Industrial Science and Technology 75.7x 98.35 99.68 0.76 100 0.04 GCF_011397855.1 5480 5650 5650 83 12 74 1 Pseudomonas_otitidis_homd_HMT_834 GCA_011399315.1 HMT-530 SZ1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes SZ1 1 2494525 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/399/315/GCA_011399315.1_ASM1139931v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA608175 1747 SAMN14167120 ASM1139931v1 Complete Genome Canu v. 1.8 2020-02-23T13:52:03.970 Japan:Shizuoka, Shizuoka Illumina NextSeq500; Oxford Nanopore Technologies GridION Keio University 100.0x 99.94 98.94 0.03 100 0.12 GCF_011399315.1 2300 2379 2379 22 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_011399455.1 HMT-530 SZ2 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes SZ2 1 2504552 60.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/399/455/GCA_011399455.1_ASM1139945v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA608176 1747 SAMN14167121 ASM1139945v1 Complete Genome Canu v. 1.8 2020-02-23T13:57:03.670 Japan:Shizuoka, Shizuoka Non-surgical site of the back of an orthopedic surgery patient Illumina NextSeq500; Oxford Nanopore Technologies GridION Keio University 100.0x 99.94 98.94 0.51 99.99 0.69 GCF_011399455.1 2312 2391 2391 22 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_011403135.1 HMT-128 JICS135 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis JICS135 1 2687768 33.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/403/135/GCA_011403135.1_ASM1140313v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJDB8742 28035 SAMD00184897 ASM1140313v1 Complete Genome HGAP v. 2.0 2020-02-06T01:00:46.200 Japan:Kanagawa, Yokohama, Tsur PacBio RS II Department of Microbiology Juntendo University Graduate School of Medicine 433.0x 99.44 99.61 0 100 0.06 GCF_011403135.1 2488 2660 2660 91 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_011525585.1 HMT-783 DA10166-2 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii DA10166-2 54 2415387 58.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/525/585/GCA_011525585.1_ASM1152558v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA597463 1720 SAMN13675787 ASM1152558v1 Scaffold SPAdes v. 3.10.0 2019-12-24T11:54:04.996 USA: University of Michigan Ho feces from healthy female Illumina HiSeq University of Michigan 98.46 0.37 99.96 0.31 WVRR01 2302 2362 2362 10 1 48 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_011604725.1 HMT-153 035 Named Cultivated Nasal (Abundance: Medium) HMT-153 Klebsiella aerogenes 035 6 5378629 54.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/604/725/GCA_011604725.1_ASM1160472v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella aerogenes PRJNA604100 548 SAMN14372988 ASM1160472v1 Complete Genome unicycler v. 0.4.8 2020-03-13T09:27:07.669 Switzerland water Oxford Nanopore MiniION; Illumina MiSeq University of Zurich 50.0x 98.77 100 0.68 100 0.28 GCF_011604725.1 5164 5426 5426 148 25 88 1 Klebsiella_aerogenes_homd_HMT_153 GCA_011612265.2 HMT-666 ATCC 14266 Named Cultivated Oral (Abundance: High) HMT-666 Corynebacterium matruchotii ATCC 14266 1 2866540 57.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/612/265/GCA_011612265.2_ASM1161226v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium matruchotii PRJNA549513 43768 SAMN14365915 ASM1161226v2 Complete Genome HGAP v. 4 2020-03-12T11:26:09.563 not available not applicable PacBio Sequel Forsyth Institute 399.0x 99.98 98.78 0 100 0.81 GCF_011612265.2 2552 2627 2627 8 12 54 1 Corynebacterium_matruchotii_homd_HMT_666 GCA_011612385.1 HMT-646 ATCC 23332 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae ATCC 23332 1 2058531 46.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/612/385/GCA_011612385.1_ASM1161238v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA549513 504 SAMN14365913 ASM1161238v1 Complete Genome HGAP v. 4 2020-03-12T11:26:09.520 not available not applicable PacBio Sequel Forsyth Institute 566.0x 98.41 98.87 0 100 0.15 GCF_011612385.1 2126 2207 2207 13 12 55 1 Kingella_kingae_homd_HMT_646 GCA_011612585.1 HMT-578 ATCC 51100 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus ATCC 51100 1 2031205 42.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/612/585/GCA_011612585.1_ASM1161258v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_H PRJNA549513 889201 SAMN14365916 ASM1161258v1 Complete Genome HGAP v. 4 2020-03-12T11:26:09.583 not available Oral Cavity PacBio Sequel Forsyth Institute 446.0x 94.99 100 0 99.98 0.08 GCF_011612585.1 1919 2022 2022 32 12 58 1 Streptococcus_cristatus_homd_HMT_578 GCA_011612705.1 HMT-646 ATCC 23331 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae ATCC 23331 1 2018460 46.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/612/705/GCA_011612705.1_ASM1161270v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA549513 504 SAMN14365914 ASM1161270v1 Complete Genome HGAP v. 4 2020-03-12T11:26:09.540 not available not applicable PacBio Sequel Forsyth Institute 418.0x 98.5 98.98 0.23 100 0.04 GCF_011612705.1 2037 2124 2124 20 12 54 1 Kingella_kingae_homd_HMT_646 GCA_011634875.1 HMT-243 S0W5 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-243 Jeotgalicoccus marinus S0W5 28 2178643 36.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/634/875/GCA_011634875.1_ASM1163487v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus;s__Jeotgalicoccus marinus PRJNA522971 2527874 SAMN10962196 ASM1163487v1 Scaffold Velvet v. 1.2.10 2019-02-18T09:02:03.220 India: Hatabaradi, Chilika Lak Water sample Illumina HiSeq School of Biotechnology, Kalinga Institute of Industrial Technology-KIIT (Deemed University) 976.0x 98.85 1.44 99.63 2.58 GCF_011634875.1 SIRQ01 2243 2327 2327 31 3 49 1 Jeotgalicoccus_marinus_homd_HMT_243 GCA_011682935.1 HMT-072 CSc20 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum CSc20 78 2981342 59.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/682/935/GCA_011682935.1_ASM1168293v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA544998 43770 SAMN11811890 ASM1168293v1 Scaffold SOAPdenovo v. 2.04 2019-05-21T21:57:06.773 China: Beijing sputum Illumina NovaSeq China CDC 100.0x 98.6 99.78 2.95 100 2.47 GCF_011682935.1 VCPB01 2817 2890 2890 10 7 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_011682945.1 HMT-072 NSCs20 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum NSCs20 76 2937252 59.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/682/945/GCA_011682945.1_ASM1168294v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA544998 43770 SAMN11811889 ASM1168294v1 Scaffold SOAPdenovo v. 2.04 2019-05-21T21:57:06.756 China: Beijing nasopharynx Illumina NovaSeq China CDC 100.0x 98.63 99.78 0.66 100 0.43 GCF_011682945.1 VCPA01 2769 2842 2842 10 7 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_011682965.1 HMT-072 CSc27 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum CSc27 79 2796099 59.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/682/965/GCA_011682965.1_ASM1168296v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA544998 43770 SAMN11811888 ASM1168296v1 Scaffold SOAPdenovo v. 2.04 2019-05-21T21:57:06.740 China: Beijing sputum Illumina NovaSeq China CDC 100.0x 97.99 99.67 0.09 99.99 0.74 GCF_011682965.1 VCOZ01 2588 2659 2659 9 6 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_011682985.1 HMT-072 NSCs27 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum NSCs27 70 2788964 59.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/682/985/GCA_011682985.1_ASM1168298v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA544998 43770 SAMN11811887 ASM1168298v1 Contig SOAPdenovo v. 2.04 2019-05-21T21:57:06.720 China: Beijing nasopharynx Illumina NovaSeq China CDC 100.0x 98.01 99.67 0.09 99.99 0.78 GCF_011682985.1 VCOY01 2584 2656 2656 9 7 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_011714665.1 HMT-425 CCUG 72040 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 72040 76 2175171 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/665/GCA_011714665.1_ASM1171466v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587713 ASM1171466v1 Scaffold SPAdes v. 3.11.1 2018-12-13T07:32:07.110 Sweden: Boras sputum Illumina HiSeq TAILORED-Treatment project 956.0x 97.23 99.82 0.2 99.99 0.19 GCF_011714665.1 RXXI01 2123 2230 2230 63 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714685.1 HMT-425 CCUG 72029 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 72029 70 2189998 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/685/GCA_011714685.1_ASM1171468v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587712 ASM1171468v1 Scaffold SPAdes v. 3.11.1 2018-12-13T07:32:07.090 Sweden:Gothenburg sputum Illumina HiSeq TAILORED-Treatment project 1063.0x 97.3 99.78 0.2 99.99 0.08 GCF_011714685.1 RXXJ01 2139 2252 2252 70 3 39 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714705.1 HMT-425 CCUG 72019 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 72019 79 2119718 39.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/705/GCA_011714705.1_ASM1171470v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587710 ASM1171470v1 Scaffold SPAdes v. 3.11.1 2018-12-13T07:32:07.037 Sweden:Gothenburg sputum Illumina HiSeq TAILORED-Treatment project 828.0x 98.61 99.75 0.2 99.99 0.06 GCF_011714705.1 RXXL01 2066 2178 2178 68 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714735.1 HMT-425 CCUG 72028 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 72028 61 2171385 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/735/GCA_011714735.1_ASM1171473v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587711 ASM1171473v1 Contig SPAdes v. 3.11.1 2018-12-13T07:32:07.070 Sweden:Gothenburg sputum Illumina HiSeq TAILORED-Treatment project 960.0x 97.04 99.74 0.2 99.99 0.12 GCF_011714735.1 RXXK01 2116 2228 2228 68 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714745.1 HMT-425 CCUG 72018 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 72018 78 2128633 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/745/GCA_011714745.1_ASM1171474v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587709 ASM1171474v1 Scaffold SPAdes v. 3.11.1 2018-12-13T07:32:07.017 Sweden:Gothenburg sputum Illumina HiSeq TAILORED-Treatment project 1020.0x 97.5 99.42 0.2 99.99 0.14 GCF_011714745.1 RXXM01 2054 2163 2163 65 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714755.1 HMT-425 CCUG 71996 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 71996 83 2169238 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/755/GCA_011714755.1_ASM1171475v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587708 ASM1171475v1 Scaffold SPAdes v. 3.11.1 2018-12-13T07:32:07.000 Sweden: Trollhattan sputum Illumina HiSeq TAILORED-Treatment project 253.0x 98.62 99.82 0.2 99.99 0.09 GCF_011714755.1 RXXN01 2132 2249 2249 73 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714795.1 HMT-425 CCUG 71653 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 71653 83 2195012 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/795/GCA_011714795.1_ASM1171479v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587706 ASM1171479v1 Scaffold SPAdes v. 3.11.1 2018-12-13T07:32:06.963 Sweden:Gothenburg sputum Illumina HiSeq TAILORED-Treatment project 785.0x 98.7 99.82 0.2 100 0.15 GCF_011714795.1 RXXP01 2163 2279 2279 73 3 39 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714825.1 HMT-425 CCUG 70988 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 70988 95 2175673 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/825/GCA_011714825.1_ASM1171482v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587705 ASM1171482v1 Contig SPAdes v. 3.11.1 2018-12-13T07:32:06.950 Sweden:Gothenburg sputum Illumina HiSeq TAILORED-Treatment project 995.0x 97.79 99.54 0.2 100 0.06 GCF_011714825.1 RXXQ01 2136 2251 2251 72 3 39 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714835.1 HMT-425 CCUG 63793 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 63793 84 2248710 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/835/GCA_011714835.1_ASM1171483v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587703 ASM1171483v1 Contig SPAdes v. 3.11.1 2018-12-13T07:32:06.907 Sweden:Gothenburg sputum Illumina HiSeq TAILORED-Treatment project 1196.0x 97.71 99.62 0.2 99.99 0.07 GCF_011714835.1 RXXS01 2214 2325 2325 68 3 39 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714855.1 HMT-425 CCUG 64062 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 64062 55 2165344 39.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/855/GCA_011714855.1_ASM1171485v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587704 ASM1171485v1 Scaffold SPAdes v. 3.11.1 2018-12-13T07:32:06.930 Sweden:Kalmar sputum Illumina HiSeq TAILORED-Treatment project 845.0x 96.97 99.62 0.2 99.99 0.14 GCF_011714855.1 RXXR01 2124 2232 2232 65 3 39 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714895.1 HMT-425 CCUG 61551 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 61551 79 2137952 39.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/895/GCA_011714895.1_ASM1171489v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587702 ASM1171489v1 Contig SPAdes v. 3.11.1 2018-12-13T07:32:06.890 Sweden: Karlstad sputum Illumina HiSeq TAILORED-Treatment project 607.0x 98.35 99.82 0.2 99.99 0.02 GCF_011714895.1 RXXT01 2088 2202 2202 70 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714915.1 HMT-425 CCUG 50868 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 50868 84 2211663 39.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/915/GCA_011714915.1_ASM1171491v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587700 ASM1171491v1 Scaffold SPAdes v. 3.11.1 2018-12-13T07:32:06.853 Missing respiratory tract Illumina HiSeq TAILORED-Treatment project 821.0x 97.57 99.62 0.2 99.98 0.09 GCF_011714915.1 RXXV01 2168 2278 2278 67 3 39 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714925.1 HMT-425 CCUG 50871 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 50871 77 2112424 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/925/GCA_011714925.1_ASM1171492v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587701 ASM1171492v1 Contig SPAdes v. 3.11.1 2018-12-13T07:32:06.873 Missing respiratory tract Illumina HiSeq TAILORED-Treatment project 611.0x 98.9 99.82 0.2 99.99 0.07 GCF_011714925.1 RXXU01 2050 2164 2164 72 3 38 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011714955.1 HMT-425 CCUG 47366 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 47366 74 2152464 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/955/GCA_011714955.1_ASM1171495v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA302716 257758 SAMN10587699 ASM1171495v1 Scaffold SPAdes v. 3.11.1 2018-12-13T07:32:06.830 Sweden: Vaxjo Unknown Illumina HiSeq TAILORED-Treatment project 784.0x 98.76 99.82 0.2 99.99 0.05 GCF_011714955.1 RXXW01 2111 2227 2227 72 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_011765485.1 HMT-686 S4 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans S4 1 2085365 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/765/485/GCA_011765485.1_ASM1176548v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA613248 1309 SAMN14397576 ASM1176548v1 Complete Genome Celera Assembler v. 8.3rc2 2020-03-18T12:18:05.543 Brazil root canal PacBio University of Florida 50.0x 99.19 99.63 0.19 100 0.06 GCF_011765485.1 1951 2061 2061 29 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_011765505.1 HMT-686 S1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans S1 1 2080705 36.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/765/505/GCA_011765505.1_ASM1176550v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA613248 1309 SAMN14397575 ASM1176550v1 Complete Genome Celera Assembler v. 8.3rc2 2020-03-18T12:18:05.523 Brazil root canal PacBio University of Florida 50.0x 99.19 99.63 0.19 100 0.06 GCF_011765505.1 1948 2058 2058 29 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_011765525.1 HMT-686 P6 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans P6 1 2085254 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/765/525/GCA_011765525.1_ASM1176552v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA613248 1309 SAMN14397574 ASM1176552v1 Complete Genome Celera Assembler v. 8.3rc2 2020-03-18T12:18:05.506 Brazil root canal PacBio University of Florida 50.0x 99.18 99.63 0.19 100 0.06 GCF_011765525.1 1948 2058 2058 29 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_011765545.1 HMT-686 P1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans P1 1 2085371 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/765/545/GCA_011765545.1_ASM1176554v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA613248 1309 SAMN14397573 ASM1176554v1 Complete Genome Celera Assembler v. 8.3rc2 2020-03-18T12:18:05.483 Brazil root canal PacBio University of Florida 50.0x 99.19 99.63 0.19 100 0.06 GCF_011765545.1 1952 2062 2062 29 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_012030345.1 HMT-341 UMB8490 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-341 Corynebacterium coyleae UMB8490 62 2483223 61.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/030/345/GCA_012030345.1_ASM1203034v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium coyleae PRJNA316969 53374 SAMN14478497 ASM1203034v1 Contig SPAdes v. 3.13.0 2020-03-27T23:43:06.033 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 141.0x 97.53 97.94 0.22 99.96 0.06 GCF_012030345.1 JAAUVV01 2338 2406 2406 8 7 52 1 Corynebacterium_coyleae_homd_HMT_341 GCA_012273155.1 HMT-686 FDAARGOS_685 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans FDAARGOS_685 1 2054143 36.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/273/155/GCA_012273155.1_ASM1227315v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA231221 1309 SAMN11056400 ASM1227315v1 Chromosome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:06.670 USA:VA ATCC Isolate Pacbio; Illumina US Food and Drug Administration 3124.1x 99.99 100 2.97 100 1.41 GCF_012273155.1 1921 2031 2031 29 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_012273175.1 HMT-842 FDAARGOS_673 Named Cultivated Skin (Abundance: Medium) HMT-842 Campylobacter ureolyticus FDAARGOS_673 1 1559279 29.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/273/175/GCA_012273175.1_ASM1227317v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B ureolyticus PRJNA231221 827 SAMN11056388 ASM1227317v1 Chromosome canu v. 1.4 2019-03-05T13:52:06.443 USA:VA Urethra of man with non-gonococcal urethritis. Pacbio; Illumina US Food and Drug Administration 2657.1x 95.89 98.95 0 99.96 0.02 GCF_012273175.1 1546 1602 1602 5 6 44 1 Campylobacter_ureolyticus_homd_HMT_842 GCA_012273215.1 HMT-434 FDAARGOS_740 Named Cultivated Oral (Abundance: High) HMT-434 Gemella haemolysans clade-434 FDAARGOS_740 1 2081429 30.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/273/215/GCA_012273215.1_ASM1227321v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_A PRJNA231221 1379 SAMN11056455 ASM1227321v1 Chromosome canu v. 1.4 2019-03-05T13:52:07.680 USA:VA expectorated sputum Pacbio; Illumina US Food and Drug Administration 2006.7x 87.87 98.56 0 99.99 0.16 GCF_012273215.1 1897 1983 0 32 12 41 1 Gemella_haemolysans_clade_434_homd_HMT_434 GCA_012273215.1 HMT-434 FDAARGOS_740 Named Cultivated Oral (Abundance: High) HMT-434 Gemella haemolysans clade-434 FDAARGOS_740 1 2081429 30.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/273/215/GCA_012273215.1_ASM1227321v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_A PRJNA231221 1379 SAMN11056455 ASM1227321v1 Chromosome canu v. 1.4 2019-03-05T13:52:07.680 USA:VA expectorated sputum Pacbio; Illumina US Food and Drug Administration 2006.7x 87.87 98.56 0 99.99 0.16 GCF_012273215.1 1897 1983 0 32 12 41 1 Gemella_haemolysans_HMT_434_626 GCA_012273435.1 HMT-127 FDAARGOS_745 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis FDAARGOS_745 3 2359666 31.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/273/435/GCA_012273435.1_ASM1227343v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA231221 1290 SAMN11056460 ASM1227343v1 Chromosome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:07.773 USA:MN clinical isolate Pacbio; Illumina US Food and Drug Administration 2486.3x 99.03 99.1 0 99.98 0.01 GCF_012273435.1 2254 2420 2420 83 19 63 1 Staphylococcus_hominis_homd_HMT_127 GCA_012396315.1 HMT-835 ATCC 700355 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-835 Corynebacterium mucifaciens ATCC 700355 25 2185664 65.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/396/315/GCA_012396315.1_ASM1239631v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium mucifaciens PRJNA622446 57171 SAMN14517857 ASM1239631v1 Contig SPAdes v. 3.13.0 2020-04-01T10:52:05.430 Switzerland: Zurich blood NovaSeq Bacterial Special Pathogens Branch (CDC) 267.8x 99.99 98.79 0 99.92 0.04 GCF_012396315.1 JAAXPF01 2085 2152 2152 8 5 53 1 Corynebacterium_mucifaciens_homd_HMT_835 GCA_012396635.1 HMT-757 SS1508 Named Cultivated Oral (Abundance: Medium) HMT-757 Gemella sanguinis SS1508 28 1795201 29.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/396/635/GCA_012396635.1_ASM1239663v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella sanguinis PRJNA622446 84135 SAMN14517840 ASM1239663v1 Contig SPAdes v. 3.13.0 2020-04-01T10:52:05.108 USA: Georgia blood NovaSeq Bacterial Special Pathogens Branch (CDC) 125.0x 99.97 98.56 0 100 0.07 GCF_012396635.1 JAAXPT01 1660 1731 1731 24 7 39 1 Gemella_sanguinis_homd_HMT_757 GCA_012641085.1 HMT-686 UA140 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UA140 21 2001996 36.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/085/GCA_012641085.1_ASM1264108v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN12529701 ASM1264108v1 Contig SPAdes v. 3.9 2019-08-07T17:39:05.747 USA:Alabama missing Illumina MiSeq University of Alabama at Birmingham 98.7x 99.03 100 1.01 100 0.27 GCF_012641085.1 WEZH01 1878 1977 1977 50 6 42 1 Streptococcus_mutans_homd_HMT_686 GCA_012641545.1 HMT-686 UAB-23 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-23 16 2044568 36.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/545/GCA_012641545.1_ASM1264154v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101762 ASM1264154v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.120 USA: Alabama tongue Illumina MiSeq University of Alabama at Birmingham 100.9x 99.12 100 0.4 100 0.07 GCF_012641545.1 RXYY01 1864 1938 1938 24 6 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012641565.1 HMT-686 UAB-16 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-16 61 2026999 36.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/565/GCA_012641565.1_ASM1264156v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101755 ASM1264156v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.000 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 99.9x 98.92 100 0.59 100 0.09 GCF_012641565.1 RXYZ01 1831 1920 1920 34 6 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012641575.1 HMT-686 UAB-15 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-15 11 1977024 36.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/575/GCA_012641575.1_ASM1264157v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101754 ASM1264157v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.980 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 97.5x 99.13 100 0.37 100 0.07 GCF_012641575.1 RXZA01 1856 1932 1932 26 6 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012641605.1 HMT-686 UAB-13 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-13 41 2031959 36.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/605/GCA_012641605.1_ASM1264160v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101752 ASM1264160v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.946 USA: Alabama tongue Illumina MiSeq University of Alabama at Birmingham 100.3x 99.12 100 0 100 0.05 GCF_012641605.1 RXZC01 1930 2028 2028 42 6 49 1 Streptococcus_mutans_homd_HMT_686 GCA_012641615.1 HMT-686 UAB-14 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-14 31 2073321 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/615/GCA_012641615.1_ASM1264161v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101753 ASM1264161v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.963 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 102.2x 99.23 100 0.37 100 0.06 GCF_012641615.1 RXZB01 1948 2089 2089 85 6 49 1 Streptococcus_mutans_homd_HMT_686 GCA_012641625.1 HMT-686 UAB-12 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-12 19 1964397 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/625/GCA_012641625.1_ASM1264162v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101751 ASM1264162v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.930 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 96.8x 99.16 100 0.56 100 0.12 GCF_012641625.1 RXZD01 1848 1957 1957 59 6 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012641665.1 HMT-686 UAB-11 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-11 23 1961863 36.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/665/GCA_012641665.1_ASM1264166v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101750 ASM1264166v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.913 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 96.7x 99.23 100 0 100 0.07 GCF_012641665.1 RXZE01 1834 1920 1920 31 6 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012641675.1 HMT-587 TB22-02 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa TB22-02 36 2597203 53.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/675/GCA_012641675.1_ASM1264167v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA559375 2047 SAMN12537708 ASM1264167v1 Contig SPAdes v. 3.13.0 2019-08-08T14:40:17.253 USA: Illinois toothbrush Illumina MiSeq Northwestern University 33.0x 96.62 99.34 1.32 100 0.34 GCF_012641675.1 VRUP01 2252 2318 2318 12 4 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_012641765.1 HMT-686 UAB-38 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-38 43 2089832 36.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/765/GCA_012641765.1_ASM1264176v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101777 ASM1264176v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.386 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 178.3x 99.09 100 0.26 100 0.08 GCF_012641765.1 QYBI01 1951 2029 2029 30 5 42 1 Streptococcus_mutans_homd_HMT_686 GCA_012641775.1 HMT-686 UAB-39 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-39 36 2004916 36.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/775/GCA_012641775.1_ASM1264177v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101778 ASM1264177v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.406 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 243.9x 99.25 100 0 100 0.08 GCF_012641775.1 QYBH01 1876 1960 1960 29 6 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012641805.1 HMT-686 UAB-40 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-40 19 1992196 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/805/GCA_012641805.1_ASM1264180v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101779 ASM1264180v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.423 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 248.9x 99.14 100 0.75 100 0.1 GCF_012641805.1 QYBG01 1860 1952 1952 41 6 44 1 Streptococcus_mutans_homd_HMT_686 GCA_012641825.1 HMT-686 UAB-36 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-36 52 2054294 36.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/825/GCA_012641825.1_ASM1264182v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101775 ASM1264182v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.350 USA: Alabama saliva Illumina MiSeq University of Alabama at Birmingham 386.8x 99.26 100 0.19 100 0.15 GCF_012641825.1 QYBK01 1921 1998 1998 27 6 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012641845.1 HMT-686 UAB-37 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-37 53 1981474 36.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/845/GCA_012641845.1_ASM1264184v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101776 ASM1264184v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.370 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 231.3x 99.14 100 0.07 100 0.08 GCF_012641845.1 QYBJ01 1843 1914 1914 24 5 41 1 Streptococcus_mutans_homd_HMT_686 GCA_012641855.1 HMT-686 UAB-34 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-34 11 1986924 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/855/GCA_012641855.1_ASM1264185v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101773 ASM1264185v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.316 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 29.6x 99.31 100 0 100 0.06 GCF_012641855.1 QYBM01 1867 1967 1967 46 5 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012641885.1 HMT-686 UAB-35 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-35 18 1984708 36.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/885/GCA_012641885.1_ASM1264188v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101774 ASM1264188v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.333 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 239.5x 99.14 100 0.75 100 0.11 GCF_012641885.1 QYBL01 1859 1937 1937 29 5 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012641905.1 HMT-686 UAB-33 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-33 14 2050803 36.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/905/GCA_012641905.1_ASM1264190v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101772 ASM1264190v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.296 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 38.4x 99.27 100 0.19 100 0.12 GCF_012641905.1 QYBN01 1942 2046 2046 54 6 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012641925.1 HMT-686 UAB-32 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-32 36 2041059 36.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/925/GCA_012641925.1_ASM1264192v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101771 ASM1264192v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.280 USA: Alabama saliva Illumina MiSeq University of Alabama at Birmingham 34.6x 99.26 100 0.56 100 0.13 GCF_012641925.1 QYBO01 1931 2032 2032 43 5 52 1 Streptococcus_mutans_homd_HMT_686 GCA_012641935.1 HMT-686 UAB-31 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-31 16 1990492 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/935/GCA_012641935.1_ASM1264193v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101770 ASM1264193v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.260 USA: Alabama tongue Illumina MiSeq University of Alabama at Birmingham 42.7x 99.26 100 0 100 0.08 GCF_012641935.1 QYBP01 1876 1959 1959 28 6 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012641965.1 HMT-686 UAB-30 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-30 16 2014838 36.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/965/GCA_012641965.1_ASM1264196v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101769 ASM1264196v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.243 USA: Alabama saliva Illumina MiSeq University of Alabama at Birmingham 32.3x 99.31 100 0.19 100 0.12 GCF_012641965.1 QYBQ01 1901 1997 1997 40 6 49 1 Streptococcus_mutans_homd_HMT_686 GCA_012641975.1 HMT-686 UAB-29 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-29 13 2011414 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/975/GCA_012641975.1_ASM1264197v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101768 ASM1264197v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.226 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 29.5x 99.05 100 0.07 100 0.18 GCF_012641975.1 QYBR01 1902 2008 2008 56 6 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012642005.1 HMT-686 UAB-28 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-28 15 2073407 36.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/005/GCA_012642005.1_ASM1264200v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101767 ASM1264200v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.206 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 30.7x 99.13 100 0.4 100 0.06 GCF_012642005.1 QYBS01 1896 1988 1988 44 5 42 1 Streptococcus_mutans_homd_HMT_686 GCA_012642015.1 HMT-686 UAB-27 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-27 4 2014513 36.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/015/GCA_012642015.1_ASM1264201v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101766 ASM1264201v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.190 USA: Alabama tongue Illumina MiSeq University of Alabama at Birmingham 25.0x 99.08 100 0.07 100 0.09 GCF_012642015.1 QYBT01 1871 1954 1954 27 6 49 1 Streptococcus_mutans_homd_HMT_686 GCA_012642035.1 HMT-686 UAB-26 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-26 23 2009530 36.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/035/GCA_012642035.1_ASM1264203v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101765 ASM1264203v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.173 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 29.7x 99.32 100 0 100 0.17 GCF_012642035.1 QYBU01 1880 1967 1967 39 5 42 1 Streptococcus_mutans_homd_HMT_686 GCA_012642055.1 HMT-686 UAB-25 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-25 21 2035011 36.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/055/GCA_012642055.1_ASM1264205v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101764 ASM1264205v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.156 USA: Alabama saliva Illumina MiSeq University of Alabama at Birmingham 37.4x 99.27 100 0 100 0.1 GCF_012642055.1 QYBV01 1905 1988 1988 28 6 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012642085.1 HMT-686 UAB-24 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-24 18 1967929 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/085/GCA_012642085.1_ASM1264208v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101763 ASM1264208v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.136 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 37.1x 99.14 100 0.37 100 0.11 GCF_012642085.1 QYBW01 1850 1930 1930 31 5 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012642105.1 HMT-686 UAB-22 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-22 19 2030863 36.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/105/GCA_012642105.1_ASM1264210v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101761 ASM1264210v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.103 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 29.6x 99.29 100 0.19 100 0.12 GCF_012642105.1 QYBX01 1906 1980 1980 27 4 42 1 Streptococcus_mutans_homd_HMT_686 GCA_012642125.1 HMT-686 UAB-21 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-21 17 2030630 36.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/125/GCA_012642125.1_ASM1264212v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101760 ASM1264212v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.086 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 57.8x 99.29 100 0.19 100 0.12 GCF_012642125.1 QYBY01 1906 1983 1983 27 6 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012642145.1 HMT-686 UAB-20 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-20 7 1981025 36.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/145/GCA_012642145.1_ASM1264214v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101759 ASM1264214v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.070 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 20.9x 99.14 100 0.75 100 0.07 GCF_012642145.1 QYBZ01 1849 1934 1934 35 6 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012642165.1 HMT-686 UAB-19 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-19 12 2039165 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/165/GCA_012642165.1_ASM1264216v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101758 ASM1264216v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.050 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 48.5x 99.13 100 0.26 100 0.12 GCF_012642165.1 QYCA01 1915 1994 1994 29 6 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012642185.1 HMT-686 UAB-18 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-18 12 2051174 36.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/185/GCA_012642185.1_ASM1264218v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101757 ASM1264218v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.033 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 29.2x 99.03 100 0.77 100 0.07 GCF_012642185.1 QYCB01 1881 1975 1975 44 6 43 1 Streptococcus_mutans_homd_HMT_686 GCA_012642205.1 HMT-686 UAB-17 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-17 12 2011891 36.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/205/GCA_012642205.1_ASM1264220v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101756 ASM1264220v1 Contig SPAdes v. 3.9 2018-05-09T18:41:34.016 USA: Alabama tongue Illumina MiSeq University of Alabama at Birmingham 29.5x 99.32 100 0 100 0.12 GCF_012642205.1 QYCC01 1901 1986 1986 30 6 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012642225.1 HMT-686 UAB-10 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-10 38 2077181 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/225/GCA_012642225.1_ASM1264222v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101749 ASM1264222v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.896 USA: Alabama plaque Illumina HiSeq 2000 University of Alabama at Birmingham 21.9x 99.23 100 0 100 0.06 GCF_012642225.1 QYCD01 1949 2072 2072 67 6 49 1 Streptococcus_mutans_homd_HMT_686 GCA_012642235.1 HMT-686 UAB-9 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-9 13 2114820 36.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/235/GCA_012642235.1_ASM1264223v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101748 ASM1264223v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.876 USA: Alabama plaque Illumina HiSeq 2000 University of Alabama at Birmingham 26.7x 99.16 100 0.77 100 0.08 GCF_012642235.1 QYCE01 1921 1994 1994 25 5 42 1 Streptococcus_mutans_homd_HMT_686 GCA_012642265.1 HMT-686 UAB-8 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-8 23 1981226 36.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/265/GCA_012642265.1_ASM1264226v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101747 ASM1264226v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.860 USA: Alabama plaque Illumina HiSeq 2000 University of Alabama at Birmingham 27.6x 99.3 100 0 100 0.08 GCF_012642265.1 QYCF01 1848 1935 1935 30 6 50 1 Streptococcus_mutans_homd_HMT_686 GCA_012642275.1 HMT-686 UAB-7 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-7 24 1958306 36.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/275/GCA_012642275.1_ASM1264227v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101746 ASM1264227v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.843 USA: Alabama plaque Illumina HiSeq 2000 University of Alabama at Birmingham 30.6x 99.34 100 0 100 0.07 GCF_012642275.1 QYCG01 1831 1919 1919 33 6 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012642305.1 HMT-686 UAB-6 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-6 16 1968640 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/305/GCA_012642305.1_ASM1264230v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101745 ASM1264230v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.826 USA: Alabama plaque Illumina HiSeq 2000 University of Alabama at Birmingham 20.4x 99.33 100 0 100 0.08 GCF_012642305.1 QYCH01 1841 1926 1926 29 6 49 1 Streptococcus_mutans_homd_HMT_686 GCA_012642325.1 HMT-686 UAB-5 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-5 22 2020767 36.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/325/GCA_012642325.1_ASM1264232v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101744 ASM1264232v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.810 USA: Alabama plaque Illumina HiSeq 2000 University of Alabama at Birmingham 23.5x 99.33 100 0.37 100 0.27 GCF_012642325.1 QYCI01 1892 1984 1984 40 5 46 1 Streptococcus_mutans_homd_HMT_686 GCA_012642345.1 HMT-686 UAB-3 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-3 18 1988846 36.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/345/GCA_012642345.1_ASM1264234v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101743 ASM1264234v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.793 USA: Alabama plaque Illumina HiSeq 2000 University of Alabama at Birmingham 450.0x 99.31 100 0 100 0.06 GCF_012642345.1 QYCJ01 1864 1976 1976 57 6 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012642355.1 HMT-686 UAB-4 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-4 23 1990785 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/355/GCA_012642355.1_ASM1264235v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09925026 ASM1264235v1 Contig SPAdes v. 3.9 2018-08-27T18:58:06.346 USA: Alabama plaque Illumina MiSeq University of Alabama at Birmingham 30.5x 99.31 100 0 100 0.06 GCF_012642355.1 QYCK01 1868 1962 1962 40 5 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012642365.1 HMT-686 UAB-2 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-2 32 2012907 36.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/365/GCA_012642365.1_ASM1264236v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101742 ASM1264236v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.776 USA: Alabama plaque Illumina HiSeq 2000 University of Alabama at Birmingham 28.5x 99.23 100 0.37 100 0.18 GCF_012642365.1 QYCL01 1902 1983 1983 26 6 48 1 Streptococcus_mutans_homd_HMT_686 GCA_012642405.1 HMT-686 UAB-1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UAB-1 25 1985422 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/405/GCA_012642405.1_ASM1264240v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA470728 1309 SAMN09101741 ASM1264240v1 Contig SPAdes v. 3.9 2018-05-09T18:41:33.756 USA: Alabama plaque Illumina HiSeq 2000 University of Alabama at Birmingham 28.2x 99.1 100 0.64 100 0.13 GCF_012642405.1 QYCM01 1860 1940 1940 31 6 42 1 Streptococcus_mutans_homd_HMT_686 GCA_012844205.1 HMT-966 BL-389-WT-23F Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-966 Alistipes shahii BL-389-WT-23F 65 3317268 58.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/844/205/GCA_012844205.1_ASM1284420v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii PRJNA561470 328814 SAMN14558239 ASM1284420v1 Contig SPAdes v. 3.6.1 2020-04-08T07:40:15.320 Germany feces Illumina MiSeq UniKlinik RWTH Aachen 400.0x 98.58 100 0 99.98 0.91 GCF_012844205.1 JABAGP01 2648 2716 2716 12 3 52 1 Alistipes_shahii_homd_HMT_966 GCA_012851115.1 HMT-567 SY333 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae SY333 6 2764332 33.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/851/115/GCA_012851115.1_ASM1285111v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA626385 29380 SAMN14639260 ASM1285111v1 Complete Genome Canu v. 1.8 2020-04-18T21:51:05.347 China: Lishui puncture fluid PacBio RSII; Oxford Nanopore MiniION; Illumina Wenzhou Medical University 100.0x 98.67 99.7 0.51 100 0.24 GCF_012851115.1 2664 2820 2820 76 19 60 1 Staphylococcus_caprae_homd_HMT_567 GCA_012851305.1 HMT-973 CBBP-1 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-973 Parabacteroides distasonis CBBP-1 1 5379509 45.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/851/305/GCA_012851305.1_ASM1285130v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis PRJNA626599 823 SAMN14645711 ASM1285130v1 Complete Genome HGAP v. 2.3.0 2020-04-20T11:55:04.490 NA PacBio RSII NEB 457.4x 97.63 99.42 0.77 99.99 1.57 GCF_012851305.1 4554 4680 4680 22 21 82 1 Parabacteroides_distasonis_homd_HMT_973 GCA_012871055.1 HMT-597 USDA 61 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-597 Bradyrhizobium elkanii USDA 61 2 9649995 63.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/871/055/GCA_012871055.1_ASM1287105v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii PRJDB717 1275962 SAMD00067082 ASM1287105v1 Complete Genome SOAPdenovo 2016-12-15T01:00:57.230 Illumina GAII Kyoto Sangyo University 309.0x 98.8 99.91 0.52 100 3.54 GCF_012871055.1 9158 9285 9285 69 3 54 1 Bradyrhizobium_elkanii_homd_HMT_597 GCA_012911545.1 HMT-758 S138 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis S138 17 2350750 43.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/911/545/GCA_012911545.1_ASM1291154v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_K PRJNA608797 1305 SAMN14209003 ASM1291154v1 Contig SOAPdenovo v. 2.04 2020-02-25T22:52:04.240 China: Hangzhou, Zhejiang throat swab of child PacBio Sequel Hangzhou center for disease control and prevention 150.0x 95.25 100 0 99.98 0.03 GCF_012911545.1 JAALOC01 2247 2330 2330 29 4 49 1 Streptococcus_sanguinis_homd_HMT_758 GCA_012913625.1 HMT-659 R7A Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-659 Mesorhizobium japonicum R7A 1 6530403 62.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/913/625/GCA_012913625.1_ASM1291362v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium japonicum PRJNA627051 935547 SAMN02597167 ASM1291362v1 Complete Genome guppy_basecaller dna_r9.4.1_450bps_hac v. 3.4.5; Flye v. 2.6; medaka r941_min_high_g344 v. 0.11.5; r 2014-01-27T12:23:41.220 New Zealand Oxford Nanopore MiniION; Illumina Curtin University 746.0x 98.63 99.92 0.41 100 0 GCF_012913625.1 6228 6293 0 0 6 58 1 Mesorhizobium_japonicum_homd_HMT_659 GCA_012913645.1 HMT-659 R7Astar Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-659 Mesorhizobium japonicum R7Astar 1 6530403 62.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/913/645/GCA_012913645.1_ASM1291364v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium japonicum PRJNA627051 2066070 SAMN14650140 ASM1291364v1 Complete Genome guppy_basecaller dna_r9.4.1_450bps_hac v. 3.4.5; Flye v. 2.6; medaka r941_min_high_g344 v. 0.11.5; r 2020-04-21T02:52:23.586 New Zealand:Dunedin missing Oxford Nanopore MiniION; Illumina NextSeq Curtin University 446.0x 98.63 99.92 0.41 100 0 GCF_012913645.1 6229 6294 0 0 6 58 1 Mesorhizobium_japonicum_homd_HMT_659 GCA_012926745.1 HMT-116 17-687 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis 17-687 42 2648964 32.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/926/745/GCA_012926745.1_ASM1292674v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA626360 29388 SAMN14639563 ASM1292674v1 Contig SPAdes v. 3.8 2020-04-19T03:48:06.833 China:Shanghai blood Illumina Huashan Hospitial of Fudan University 200.0x 98.97 99.81 0.28 100 0.17 GCF_012926745.1 JABBMM01 2545 2662 2662 52 10 54 1 Staphylococcus_capitis_homd_HMT_116 GCA_012926855.1 HMT-116 15-843 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis 15-843 40 2602192 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/926/855/GCA_012926855.1_ASM1292685v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA626360 29388 SAMN14639557 ASM1292685v1 Contig SPAdes v. 3.8 2020-04-19T03:48:06.726 China:Shanghai blood Illumina Huashan Hospitial of Fudan University 200.0x 98.94 99.81 0.1 100 0.16 GCF_012926855.1 JABBMG01 2484 2602 2602 51 10 56 1 Staphylococcus_capitis_homd_HMT_116 GCA_012931705.2 HMT-468 168 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-468 Bacillus subtilis 168 1 4227167 43.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/931/705/GCA_012931705.2_ASM1293170v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis PRJNA626600 224308 SAMN14645746 ASM1293170v2 Complete Genome HGAP v. 3 2020-04-20T11:59:07.583 Germany: Jena liquid-air interface biofilm PacBio Dansk: Universitet 223.2x 99.99 98.53 0.99 100 0.44 GCF_012931705.2 4244 4459 4459 98 30 86 1 Bacillus_subtilis_homd_HMT_468 GCA_012955485.1 HMT-716 347-16 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-716 Lacticaseibacillus paracasei 347-16 3 3219033 46.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/955/485/GCA_012955485.1_ASM1295548v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei PRJNA588921 1597 SAMN13259076 ASM1295548v1 Complete Genome MaSuRCA v. 3.2.8 2019-11-12T04:07:03.150 Russia: Kislovodsk feces Illumina; PacBio Stavropol Plague Control Reseach Institute 36.0x 98.64 99.46 0 99.83 0.51 GCF_012955485.1 3084 3192 3192 33 15 59 1 Lacticaseibacillus_paracasei_homd_HMT_716 GCA_012955505.1 HMT-120 SCAID URN1-2019 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SCAID URN1-2019 1 2256190 33.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/955/505/GCA_012955505.1_ASM1295550v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA627194 1283 SAMN14667507 ASM1295550v1 Chromosome Bowtie v. 1.2.3 2020-04-22T03:51:06.003 Kazakhstan: Almaty urine IonTorrent Scientific Center for Anti-infectious Drugs (SCAID) 19.0x 98.53 94.43 0 92.36 0.9 2540 2691 2691 79 10 62 0 Staphylococcus_haemolyticus_homd_HMT_120 GCA_012972105.1 HMT-659 R7AstarV2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-659 Mesorhizobium japonicum R7AstarV2 1 6530396 62.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/972/105/GCA_012972105.1_ASM1297210v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium japonicum PRJNA627051 2066070 SAMN14677114 ASM1297210v1 Complete Genome reference-based v. NA 2020-04-23T08:14:20.213 New Zealand:Dunedin NA Illumina NextSeq Curtin University 48.0x 98.63 99.92 0.41 100 0 GCF_012972105.1 6230 6295 0 0 6 58 1 Mesorhizobium_japonicum_homd_HMT_659 GCA_012972145.1 HMT-659 R7ANSstar Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-659 Mesorhizobium japonicum R7ANSstar 1 6028604 63.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/972/145/GCA_012972145.1_ASM1297214v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium japonicum PRJNA627051 2066070 SAMN14677145 ASM1297214v1 Complete Genome reference based v. NZ 2020-04-23T08:21:13.626 New Zealand:Dunedin NA Illumina NextSeq Curtin University 159.0x 98.76 99.92 0.41 99.99 0 GCF_012972145.1 5783 5848 0 0 6 58 1 Mesorhizobium_japonicum_homd_HMT_659 GCA_012976625.1 HMT-830 13 Named Cultivated Vaginal (Abundance: Scarce) HMT-830 Mobiluncus mulieris 13 42 2593700 54.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/976/625/GCA_012976625.1_ASM1297662v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus mulieris PRJNA625902 2052 SAMN14611121 ASM1297662v1 Contig SPAdes v. 3.13.1 2020-04-17T10:09:06.000 China: Hangzhou Vaginal secretion Illumina HiSeq Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University 100.0x 97.92 99.53 0.98 99.98 1.92 GCF_012976625.1 JABCUR01 2297 2356 2356 7 5 45 2 Mobiluncus_mulieris_homd_HMT_830 GCA_012978875.1 HMT-580 ATCC 35224 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus ATCC 35224 24 1950242 44.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/978/875/GCA_012978875.1_ASM1297887v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA293840 200 SAMN04010546 ASM1297887v1 Contig Newbler v. 2.6 2015-08-25T11:50:41.000 USA: Georgia jaw abscess Illumina MiSeq USDA, ARS, WRRC 136.0x 99.99 99.51 0.74 99.73 0.07 GCF_012978875.1 LIWU01 1915 1965 1965 5 2 42 1 Campylobacter_curvus_homd_HMT_580 GCA_012978895.1 HMT-580 370.96 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus 370.96 35 2023950 43.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/978/895/GCA_012978895.1_ASM1297889v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA293841 200 SAMN04010547 ASM1297889v1 Contig Newbler v. 2.6 2015-08-25T11:50:41.167 South Africa missing Illumina MiSeq USDA, ARS, WRRC 131.0x 95.83 99.88 0.56 99.94 0.25 GCF_012978895.1 LIWV01 2014 2060 2060 5 2 38 1 Campylobacter_curvus_homd_HMT_580 GCA_012978915.1 HMT-580 SS167074 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus SS167074 28 1962220 44.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/978/915/GCA_012978915.1_ASM1297891v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA293842 200 SAMN04010548 ASM1297891v1 Contig Newbler v. 2.6 2015-08-25T11:50:41.277 Denmark missing Illumina MiSeq USDA, ARS, WRRC 311.0x 95.93 99.69 0.37 99.96 0.25 GCF_012978915.1 LIWW01 1949 1995 1995 4 2 39 1 Campylobacter_curvus_homd_HMT_580 GCA_012978935.1 HMT-580 SS177624 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus SS177624 28 1933223 44.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/978/935/GCA_012978935.1_ASM1297893v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA293843 200 SAMN04010549 ASM1297893v1 Contig Newbler v. 2.6 2015-08-25T11:50:41.333 Missing missing Illumina MiSeq USDA, ARS, WRRC 148.0x 95.54 99.32 1.11 99.95 0.4 GCF_012978935.1 LIWX01 1912 1956 1956 4 2 37 1 Campylobacter_curvus_homd_HMT_580 GCA_012978955.1 HMT-580 SS119296 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus SS119296 27 1928073 44.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/978/955/GCA_012978955.1_ASM1297895v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA293844 200 SAMN04010550 ASM1297895v1 Contig Newbler v. 2.6 2015-08-25T11:50:41.370 Denmark missing Illumina MiSeq USDA, ARS, WRRC 372.0x 95.94 99.88 0.37 99.96 0.28 GCF_012978955.1 LIWY01 1904 1950 1950 4 2 39 1 Campylobacter_curvus_homd_HMT_580 GCA_012978975.1 HMT-580 SS174371 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus SS174371 39 2009544 44.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/978/975/GCA_012978975.1_ASM1297897v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA293845 200 SAMN04010551 ASM1297897v1 Contig Newbler v. 2.6 2015-08-25T11:50:41.417 Denmark missing Illumina MiSeq USDA, ARS, WRRC 383.0x 95.75 99.51 0.49 99.97 0.2 GCF_012978975.1 LIWZ01 1986 2032 2032 4 4 37 1 Campylobacter_curvus_homd_HMT_580 GCA_012978995.1 HMT-580 17503 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus 17503 31 2018414 44.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/978/995/GCA_012978995.1_ASM1297899v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA293846 200 SAMN04010552 ASM1297899v1 Contig Newbler v. 2.6 2015-08-25T11:50:41.457 Denmark missing Illumina MiSeq USDA, ARS, WRRC 123.0x 95.9 98.95 0.56 99.95 0.24 GCF_012978995.1 LIXA01 2031 2074 2074 4 2 36 1 Campylobacter_curvus_homd_HMT_580 GCA_012979015.1 HMT-580 13570 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus 13570 32 1903081 44.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/979/015/GCA_012979015.1_ASM1297901v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA293848 200 SAMN04010553 ASM1297901v1 Contig Newbler v. 2.6 2015-08-25T11:50:41.507 Denmark missing Illumina MiSeq USDA, ARS, WRRC 133.0x 96.15 99.68 0.37 99.92 0.11 GCF_012979015.1 LIXB01 1860 1905 1905 4 2 38 1 Campylobacter_curvus_homd_HMT_580 GCA_012979035.1 HMT-580 13153 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus 13153 23 1947544 44.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/979/035/GCA_012979035.1_ASM1297903v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA293849 200 SAMN04010554 ASM1297903v1 Contig Newbler v. 2.6 2015-08-25T11:50:41.557 Denmark missing Illumina MiSeq USDA, ARS, WRRC 157.0x 95.89 99.69 0 99.92 0.38 GCF_012979035.1 LIXC01 1904 1950 1950 4 2 39 1 Campylobacter_curvus_homd_HMT_580 GCA_012979055.1 HMT-580 15500 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus 15500 31 2026710 44.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/979/055/GCA_012979055.1_ASM1297905v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA293850 200 SAMN04010555 ASM1297905v1 Contig Newbler v. 2.6 2015-08-25T11:50:41.613 Denmark missing Illumina MiSeq USDA, ARS, WRRC 148.0x 95.96 99.88 0.37 99.97 0.37 GCF_012979055.1 LIXD01 2013 2058 2058 4 2 38 1 Campylobacter_curvus_homd_HMT_580 GCA_013004615.1 HMT-027 ATCC 700815 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-027 Cupriavidus gilardii ATCC 700815 123 5761323 67.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/004/615/GCA_013004615.1_ASM1300461v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus;s__Cupriavidus gilardii PRJNA622446 82541 SAMN14517833 ASM1300461v1 Contig SPAdes v. 3.13.0 2020-04-01T10:52:04.940 missing Whirl pool NovaSeq Bacterial Special Pathogens Branch (CDC) 80.6x 99.99 99.89 0.69 100 0.11 GCF_013004615.1 JABEMD01 5172 5257 5257 23 3 58 1 Cupriavidus_gilardii_homd_HMT_027 GCA_013009385.1 HMT-468 168 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-468 Bacillus subtilis 168 1 4316079 43.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/009/385/GCA_013009385.1_ASM1300938v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis PRJNA626600 224308 SAMN14645747 ASM1300938v1 Complete Genome HGAP v. 3 2020-04-20T11:59:07.603 Germany: Jena liquid-air interface biofilm PacBio Dansk: Universitet 189.9x 99.99 98.52 0.25 100 0.27 GCF_013009385.1 4383 4602 4602 102 30 86 1 Bacillus_subtilis_homd_HMT_468 GCA_013009555.1 HMT-975 DSM 17855 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-975 Phocaeicola dorei DSM 17855 1 5625488 42.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/009/555/GCA_013009555.1_ASM1300955v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei PRJNA589910 357276 SAMN13293921 ASM1300955v1 Complete Genome Flye v. 2.6 2019-11-15T20:39:04.590 Japan Oxford Nanopore GridION University of Florida 139.0x 99.99 99.25 0 100 0.18 GCF_013009555.1 4615 4763 4763 45 21 81 1 Phocaeicola_dorei_homd_HMT_975 GCA_013009675.1 HMT-975 JR01 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-975 Phocaeicola dorei JR01 1 5511747 42.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/009/675/GCA_013009675.1_ASM1300967v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei PRJNA589910 357276 SAMN13293896 ASM1300967v1 Complete Genome Flye v. 2.6 2019-11-15T20:07:05.433 not applicable Oxford Nanopore GridION University of Florida 96.0x 99.37 99.25 0 100 0.05 GCF_013009675.1 4490 4633 4633 42 21 79 1 Phocaeicola_dorei_homd_HMT_975 GCA_013009875.1 HMT-975 JR02 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-975 Phocaeicola dorei JR02 1 5515594 42.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/009/875/GCA_013009875.1_ASM1300987v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei PRJNA589910 357276 SAMN13293897 ASM1300987v1 Complete Genome Flye v. 2.6 2019-11-15T20:07:05.460 not applicable Oxford Nanopore GridION University of Florida 212.0x 99.37 98.87 0 100 0.04 GCF_013009875.1 4495 4638 4638 42 21 79 1 Phocaeicola_dorei_homd_HMT_975 GCA_013010095.1 HMT-975 JR03 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-975 Phocaeicola dorei JR03 1 5510617 42.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/010/095/GCA_013010095.1_ASM1301009v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei PRJNA589910 357276 SAMN13293898 ASM1301009v1 Complete Genome Flye v. 2.6 2019-11-15T20:07:05.476 not applicable Oxford Nanopore GridION University of Florida 246.0x 99.37 99.25 0 100 0.04 GCF_013010095.1 4491 4634 4634 42 21 79 1 Phocaeicola_dorei_homd_HMT_975 GCA_013010255.1 HMT-975 JR04 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-975 Phocaeicola dorei JR04 1 5575489 41.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/010/255/GCA_013010255.1_ASM1301025v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei PRJNA589910 357276 SAMN13293899 ASM1301025v1 Complete Genome Flye v. 2.6 2019-11-15T20:07:05.493 not applicable Oxford Nanopore GridION University of Florida 165.0x 99.44 99.25 0.38 100 1.94 GCF_013010255.1 4613 4738 4738 22 21 81 1 Phocaeicola_dorei_homd_HMT_975 GCA_013010365.1 HMT-975 JR05 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-975 Phocaeicola dorei JR05 1 5571237 41.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/010/365/GCA_013010365.1_ASM1301036v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei PRJNA589910 357276 SAMN13293900 ASM1301036v1 Complete Genome Flye v. 2.6 2019-11-15T20:07:05.510 not applicable Oxford Nanopore GridION University of Florida 218.0x 99.44 99.25 0.38 100 1.94 GCF_013010365.1 4615 4740 4740 22 21 81 1 Phocaeicola_dorei_homd_HMT_975 GCA_013047165.1 HMT-734 6A-10 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 6A-10 1 2219840 39.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/047/165/GCA_013047165.1_ASM1304716v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA629524 1313 SAMN14779717 ASM1304716v1 Complete Genome canu v. 1.2 2020-04-30T12:58:07.110 USA: Dallas County, Texas nasopharynx Pacbio Sequel Institute for Genome Sciences, University of Maryland, Baltimore 223.0x 98.7 99.38 0.69 100 0.7 GCF_013047165.1 2204 2354 2354 79 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_013098515.1 HMT-488 CM010 Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur CM010 1 839600 50.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/098/515/GCA_013098515.1_ASM1309851v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp013100825 PRJNA282954 713059 SAMN11483326 ASM1309851v1 Complete Genome HGAP v. 3 2019-04-23T14:32:05.990 USA: Cambridge, Massachusetts human oral cavity UC16 PacBio RS II The Forsyth Institute 674.0x 63.25 0.85 99.8 0.09 GCF_013098515.1 863 913 913 4 3 43 0 Nanosynbacter_fur_homd_HMT_488 GCA_013098655.1 HMT-955 CM009 Unnamed Cultivated in coculture Oral (Abundance: Scarce) HMT-955 Saccharimonas sicarius CM009 1 841891 46.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/098/655/GCA_013098655.1_ASM1309865v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp010202265 PRJNA282954 2572087 SAMN11483325 ASM1309865v1 Complete Genome HGAP v. 3 2019-04-23T14:32:05.973 USA: Cambridge, Massachusetts human oral cavity UC16 PacBio RS II The Forsyth Institute 875.0x 64.35 3.7 99.23 0.74 GCF_013098655.1 838 891 891 5 3 45 0 Saccharimonas_sicarius_homd_HMT_955 GCA_013098855.1 HMT-955 CM003 Unnamed Cultivated in coculture Oral (Abundance: Scarce) HMT-955 Saccharimonas sicarius CM003 1 835009 46.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/098/855/GCA_013098855.1_ASM1309885v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp010202265 PRJNA282954 2572087 SAMN11483324 ASM1309885v1 Complete Genome HGAP v. 3 2019-04-23T14:32:05.956 USA: Cambridge, Massachusetts human oral cavity UC01 PacBio RS II The Forsyth Institute 1546.0x 64.04 3.7 97.77 0.63 GCF_013098855.1 833 883 883 5 3 42 0 Saccharimonas_sicarius_homd_HMT_955 GCA_013099015.1 HMT-488 CM002 Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur CM002 1 877855 50.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/099/015/GCA_013099015.1_ASM1309901v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp013099015 PRJNA282954 713059 SAMN11483323 ASM1309901v1 Complete Genome HGAP v. 3 2019-04-23T14:32:05.940 USA: Cambridge, Massachusetts human oral cavity UC03 PacBio RS II The Forsyth Institute 478.0x 63.5 0.85 99.47 0.15 GCF_013099015.1 892 942 942 4 3 43 0 Nanosynbacter_fur_homd_HMT_488 GCA_013099195.1 HMT-488 CM001 Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur CM001 1 856991 50.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/099/195/GCA_013099195.1_ASM1309919v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp013099195 PRJNA282954 713059 SAMN11483322 ASM1309919v1 Complete Genome HGAP v. 3 2019-04-23T14:32:05.923 USA: Cambridge, Massachusetts human oral cavity UC15 PacBio RS II The Forsyth Institute 1400.0x 62.82 1.71 99.96 1.03 GCF_013099195.1 879 930 930 4 3 44 0 Nanosynbacter_fur_homd_HMT_488 GCA_013100805.1 HMT-488 FS03P Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur FS03P 1 858111 50.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/100/805/GCA_013100805.1_ASM1310080v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp013100805 PRJNA282954 713059 SAMN11483321 ASM1310080v1 Complete Genome HGAP v. 4 2019-04-23T14:32:05.906 USA: Cambridge, Massachusetts human oral cavity FS03 PacBio Sequel The Forsyth Institute 325.0x 62.82 0.85 99.76 0.26 GCF_013100805.1 868 919 919 5 3 43 0 Nanosynbacter_fur_homd_HMT_488 GCA_013100825.1 HMT-488 CM006 Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur CM006 1 893660 50.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/100/825/GCA_013100825.1_ASM1310082v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp013100825 PRJNA282954 713059 SAMN11483320 ASM1310082v1 Complete Genome HGAP v. 4 2019-04-23T14:32:05.886 USA: Cambridge, Massachusetts human oral cavity UC02 PacBio Sequel The Forsyth Institute 450.0x 63.68 0.85 99.9 0.11 GCF_013100825.1 936 986 986 4 3 43 0 Nanosynbacter_fur_homd_HMT_488 GCA_013100845.1 HMT-488 AC002 Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur AC002 1 847999 50.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/100/845/GCA_013100845.1_ASM1310084v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp005697215 PRJNA282954 713059 SAMN11483319 ASM1310084v1 Complete Genome HGAP v. 4 2019-04-23T14:32:05.870 USA: Cambridge, Massachusetts human oral cavity UC19 PacBio Sequel The Forsyth Institute 321.0x 63.68 0.85 99.48 0.11 GCF_013100845.1 864 917 917 6 3 44 0 Nanosynbacter_fur_homd_HMT_488 GCA_013127315.1 HMT-374 72-3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-374 Cellulosimicrobium funkei 72-3 1 4220771 74.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/127/315/GCA_013127315.1_ASM1312731v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium;s__Cellulosimicrobium funkei PRJNA629416 2731680 SAMN14775351 ASM1312731v1 Complete Genome unicycler v. v0.4.7 2020-04-29T22:29:03.586 China Feces, hair,blood Oxford Nanopore Jilin University 74.7x 100 1.25 100 0.48 GCF_013127315.1 3709 3802 3802 24 9 59 1 Cellulosimicrobium_funkei_homd_HMT_374 GCA_013137915.1 HMT-202 Fn12230 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum Fn12230 3 2473944 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/137/915/GCA_013137915.1_ASM1313791v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA632750 851 SAMN14918738 ASM1313791v1 Complete Genome Uncycler v. v0.4.8-beta 2020-05-14T09:56:04.750 not collected oral Illumina HiSeq; PacBio Columbia University 350.0x 92.39 100 0 100 0.09 GCF_013137915.1 2394 2483 2483 25 15 48 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_013137955.1 HMT-076 WB224 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri WB224 7 2571966 32.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/137/955/GCA_013137955.1_ASM1313795v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA523316 1292 SAMN10970963 ASM1313795v1 Complete Genome Unicycler v. v0.4.8-beta 2019-02-20T07:25:03.400 China:Chengdu Doubanjiang PacBio Sequel; Illumina HiSeq Institute of Agro-products processing Science and Technology of SAAS 500.0x 96.07 99.73 0.1 100 0.16 GCF_013137955.1 2430 2562 2562 55 16 60 1 Staphylococcus_warneri_homd_HMT_076 GCA_013154915.1 HMT-209 JS3050 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus JS3050 2 4032523 66.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/154/915/GCA_013154915.1_ASM1315491v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA631811 2735554 SAMN14892363 ASM1315491v1 Complete Genome SOAPdenovo. v. 2.3 2020-05-11T21:38:02.856 Brazil: Camacari chemical manufacturing sites PacBio; Illumina Shanghai Jiao Tong University 200.0x 99.98 0.17 100 0.17 GCF_013154915.1 3774 3924 3924 87 9 53 1 Acidovorax_ebreus_homd_HMT_209 GCA_013267415.1 HMT-389 FDAARGOS_785 Named Cultivated Oral (Abundance: High) HMT-389 Abiotrophia defectiva FDAARGOS_785 1 2046826 47.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/415/GCA_013267415.1_ASM1326741v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;s__Abiotrophia defectiva PRJNA231221 46125 SAMN11056500 ASM1326741v1 Complete Genome Canu v. 1.7 2019-03-05T13:52:08.540 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1526.9x 99.99 98.46 0 99.02 0.06 GCF_013267415.1 1838 1919 1919 21 12 47 1 Abiotrophia_defectiva_homd_HMT_389 GCA_013267495.1 HMT-755 FDAARGOS_771 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius FDAARGOS_771 1 1999501 40.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/495/GCA_013267495.1_ASM1326749v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA231221 1304 SAMN11056486 ASM1326749v1 Complete Genome Canu v. 1.7 2019-03-05T13:52:08.276 USA:VA normal skin of the right arm Pacbio; Illumina US Food and Drug Administration 4237.1x 96.76 99.84 0.15 99.94 0.22 GCF_013267495.1 1853 1968 1968 28 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_013267515.1 HMT-644 FDAARGOS_769 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius FDAARGOS_769 1 1933377 37.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/515/GCA_013267515.1_ASM1326751v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA231221 1338 SAMN11056484 ASM1326751v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:08.216 USA:VA dental plaque Pacbio; Illumina US Food and Drug Administration 2037.3x 98.53 99.88 0 100 0.25 GCF_013267515.1 1894 2002 2002 34 12 61 1 Streptococcus_intermedius_homd_HMT_644 GCA_013267535.1 HMT-662 FDAARGOS_764 Named Cultivated Nasal (Abundance: Medium) HMT-662 Finegoldia magna FDAARGOS_764 1 2090058 31.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/535/GCA_013267535.1_ASM1326753v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia;s__Finegoldia magna_H PRJNA231221 1260 SAMN11056479 ASM1326753v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:08.106 USA:VA vagina Pacbio; Illumina US Food and Drug Administration 1616.8x 91.56 99.39 0 99.94 1.5 GCF_013267535.1 1948 2052 2052 42 12 49 1 Finegoldia_magna_homd_HMT_662 GCA_013267575.1 HMT-127 FDAARGOS_762 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis FDAARGOS_762 5 2255507 31.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/575/GCA_013267575.1_ASM1326757v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA231221 1290 SAMN11056477 ASM1326757v1 Complete Genome Canu v. 1.7, SPAdes v. 3.11.1 2019-03-05T13:52:08.070 USA:VA normal skin of the left arm Pacbio; Illumina US Food and Drug Administration 1357.1x 99.39 99.38 0 100 0.52 GCF_013267575.1 2159 2299 2299 55 19 65 1 Staphylococcus_hominis_homd_HMT_127 GCA_013267595.1 HMT-469 FDAARGOS_760 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica FDAARGOS_760 2 3352987 40.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/595/GCA_013267595.1_ASM1326759v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_D PRJNA231221 28132 SAMN11056475 ASM1326759v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:08.036 USA:VA oral swab Pacbio; Illumina US Food and Drug Administration 821.8x 95.52 99.32 0 99.96 0.06 GCF_013267595.1 2699 2775 2775 12 12 51 1 Prevotella_melaninogenica_homd_HMT_469 GCA_013267615.1 HMT-973 FDAARGOS_759 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-973 Parabacteroides distasonis FDAARGOS_759 1 4926033 45.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/615/GCA_013267615.1_ASM1326761v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis PRJNA231221 823 SAMN11056474 ASM1326761v1 Complete Genome Canu v. 1.7 2019-03-05T13:52:08.020 USA:VA human fecal sample Pacbio; Illumina US Food and Drug Administration 614.1x 99.04 99.42 0 99.98 0.98 GCF_013267615.1 4100 4244 4244 40 21 82 1 Parabacteroides_distasonis_homd_HMT_973 GCA_013267675.1 HMT-116 FDAARGOS_753 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis FDAARGOS_753 4 2490953 32.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/675/GCA_013267675.1_ASM1326767v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA231221 29388 SAMN11056468 ASM1326767v1 Complete Genome Canu v. 1.7, SPAdes v. 3.11.1 2019-03-05T13:52:07.913 USA:VA expectorated sputum Pacbio; Illumina US Food and Drug Administration 1445.0x 99.75 99.25 0.06 99.99 0.27 GCF_013267675.1 2433 2571 2571 57 19 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_013267715.1 HMT-076 FDAARGOS_754 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri FDAARGOS_754 2 2460001 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/715/GCA_013267715.1_ASM1326771v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri_A PRJNA231221 1292 SAMN11056469 ASM1326771v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:07.930 USA:VA normal skin of the right arm Pacbio; Illumina US Food and Drug Administration 1331.9x 94.15 99.73 0 100 0.03 GCF_013267715.1 2349 2484 2484 52 19 63 1 Staphylococcus_warneri_homd_HMT_076 GCA_013267735.1 HMT-587 FDAARGOS_752 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa FDAARGOS_752 1 2533415 53.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/735/GCA_013267735.1_ASM1326773v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA231221 2047 SAMN11056467 ASM1326773v1 Complete Genome Canu v. 1.7 2019-03-05T13:52:07.893 USA:VA expectorated sputum Pacbio; Illumina US Food and Drug Administration 1267.8x 96.55 99.34 0 100 0.13 GCF_013267735.1 2168 2238 2238 12 8 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_013267755.1 HMT-889 JTL Named Cultivated Vaginal (Abundance: Medium) HMT-889 Bifidobacterium breve JTL 1 2289549 58.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/755/GCA_013267755.1_ASM1326775v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium breve PRJNA635210 1685 SAMN15028705 ASM1326775v1 Complete Genome Celera Assembler v. Canu ver. 1.7 2020-05-26T23:18:03.223 South Korea infant feces PacBio KHEPRIOME 98.0x 99.06 100 0 99.99 0.04 GCF_013267755.1 1874 1946 1946 11 6 54 1 Bifidobacterium_breve_homd_HMT_889 GCA_013267835.1 HMT-476 FDAARGOS_758 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava FDAARGOS_758 1 2224757 49.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/267/835/GCA_013267835.1_ASM1326783v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA231221 488 SAMN11056473 ASM1326783v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:08.000 USA:VA expectorated sputum Pacbio; Illumina US Food and Drug Administration 1389.2x 99.77 1.13 100 0.54 GCF_013267835.1 2058 2150 2150 18 12 61 1 Neisseria_subflava_homd_HMT_476 GCA_013276315.1 HMT-425 2741 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 2741 173 2185544 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/315/GCA_013276315.1_ASM1327631v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582691 SAMN11665920 ASM1327631v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:05.107 Poland: Ruda Sl. BAL MiSeq National Medicines Institute 48.0x 99.82 1.39 99.99 0.02 GCF_013276315.1 VMKU01 2130 2246 2246 70 3 42 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276335.1 HMT-425 2100 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 2100 117 2142160 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/335/GCA_013276335.1_ASM1327633v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582690 SAMN11665919 ASM1327633v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:05.090 Poland: Suwalki BAL MiSeq National Medicines Institute 71.0x 99.42 0.27 99.99 0.02 GCF_013276335.1 VMKV01 2050 2163 2163 66 3 43 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276385.1 HMT-425 1969 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 1969 146 2181076 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/385/GCA_013276385.1_ASM1327638v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582688 SAMN11665917 ASM1327638v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:05.057 Poland: Plock blood MiSeq National Medicines Institute 51.0x 99.62 0.2 99.99 0.05 GCF_013276385.1 VMKX01 2115 2225 2225 66 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276405.1 HMT-425 1290 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 1290 170 2223934 39.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/405/GCA_013276405.1_ASM1327640v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582687 SAMN11665916 ASM1327640v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:05.040 Poland: Suwalki BAL MiSeq National Medicines Institute 59.0x 99.42 0.2 99.99 0.24 GCF_013276405.1 VMKY01 2157 2260 2260 65 3 34 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276415.1 HMT-425 4477 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 4477 166 2174914 39.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/415/GCA_013276415.1_ASM1327641v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582686 SAMN11665915 ASM1327641v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:05.023 Poland: Otwock BAL MiSeq National Medicines Institute 53.0x 99.82 0.4 99.99 0.17 GCF_013276415.1 VMKZ01 2092 2209 2209 66 3 47 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276425.1 HMT-425 3874 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 3874 166 2200073 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/425/GCA_013276425.1_ASM1327642v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582685 SAMN11665914 ASM1327642v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:05.007 Poland: Wroclaw BAL MiSeq National Medicines Institute 59.0x 99.22 0.2 99.99 0.14 GCF_013276425.1 VMLA01 2143 2249 2249 65 4 36 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276435.1 HMT-425 6178 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 6178 138 2188265 39.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/435/GCA_013276435.1_ASM1327643v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582684 SAMN11665913 ASM1327643v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.987 Poland: Suwalki BAL MiSeq National Medicines Institute 81.0x 99.82 0.2 99.99 0.11 GCF_013276435.1 VMLB01 2119 2236 2236 64 5 47 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276505.1 HMT-398 5905 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani 5905 13 1822865 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/505/GCA_013276505.1_ASM1327650v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp013276505 PRJNA556140 2582683 SAMN11665912 ASM1327650v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.973 Poland: Suwalki BAL MiSeq National Medicines Institute 106.0x 99.87 0.2 99.99 0.08 GCF_013276505.1 VMLC01 1776 1849 1849 35 3 34 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_013276505.1 HMT-398 5905 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani 5905 13 1822865 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/505/GCA_013276505.1_ASM1327650v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp013276505 PRJNA556140 2582683 SAMN11665912 ASM1327650v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.973 Poland: Suwalki BAL MiSeq National Medicines Institute 106.0x 99.87 0.2 99.99 0.08 GCF_013276505.1 VMLC01 1776 1849 1849 35 3 34 1 Streptococcus_oralis_HMT_071_398_707 GCA_013276525.1 HMT-425 3506 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 3506 108 2122470 39.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/525/GCA_013276525.1_ASM1327652v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582681 SAMN11665910 ASM1327652v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.940 Poland: Grodzisk Maz. BAL MiSeq National Medicines Institute 85.0x 99.02 0.2 99.98 0.03 GCF_013276525.1 VMLE01 2029 2140 2140 65 4 41 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276535.1 HMT-425 636 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 636 129 2170009 39.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/535/GCA_013276535.1_ASM1327653v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582680 SAMN11665909 ASM1327653v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.927 Poland: Suwalki sputum MiSeq National Medicines Institute 64.0x 99.82 1 99.99 0.18 GCF_013276535.1 VMLF01 2113 2229 2229 76 4 35 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276595.1 HMT-425 10824 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 10824 175 2184824 39.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/595/GCA_013276595.1_ASM1327659v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582678 SAMN11665907 ASM1327659v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.893 Poland: Suwalki sputum MiSeq National Medicines Institute 88.0x 99.62 0.2 100 0.05 GCF_013276595.1 VMLH01 2066 2179 2179 66 3 43 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276675.1 HMT-425 4272 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 4272 122 2178723 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/675/GCA_013276675.1_ASM1327667v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582674 SAMN11665903 ASM1327667v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.830 Poland: Suwalki sputum MiSeq National Medicines Institute 59.0x 99.82 1.79 99.99 1.72 GCF_013276675.1 VMLL01 2125 2251 2251 73 3 49 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276695.1 HMT-425 4155 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 4155 136 2206628 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/695/GCA_013276695.1_ASM1327669v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582673 SAMN11665902 ASM1327669v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.807 Poland: Suwalki BAL MiSeq National Medicines Institute 56.0x 99.62 0.3 99.99 0.19 GCF_013276695.1 VMLM01 2177 2287 2287 67 3 39 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276705.1 HMT-425 3764 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 3764 100 2165968 39.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/705/GCA_013276705.1_ASM1327670v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582672 SAMN11665901 ASM1327670v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.790 Poland: Koszalin sputum MiSeq National Medicines Institute 80.0x 99.42 0.2 99.98 0.04 GCF_013276705.1 VMLN01 2108 2220 2220 67 3 41 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276735.1 HMT-425 1559 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 1559 144 2223190 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/735/GCA_013276735.1_ASM1327673v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582671 SAMN11665900 ASM1327673v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.777 Poland: Bydgoszcz sputum MiSeq National Medicines Institute 76.0x 98.62 0.2 100 0.02 GCF_013276735.1 VMLO01 2171 2292 2292 74 4 42 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276805.1 HMT-425 1449 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 1449 124 2202836 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/805/GCA_013276805.1_ASM1327680v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582658 SAMN11665896 ASM1327680v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.713 Poland: Suwalki BAL MiSeq National Medicines Institute 65.0x 99.82 0.2 99.98 0.15 GCF_013276805.1 VMLS01 2162 2279 2279 67 4 45 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276815.1 HMT-425 1055 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 1055 181 2223952 39.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/815/GCA_013276815.1_ASM1327681v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582667 SAMN11665895 ASM1327681v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.700 Poland: Suwalki central catheter MiSeq National Medicines Institute 43.0x 99.82 0.22 99.99 0.17 GCF_013276815.1 VMLT01 2172 2289 2289 68 3 45 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013276855.1 HMT-425 716 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 716 111 2151547 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/276/855/GCA_013276855.1_ASM1327685v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582666 SAMN11665894 ASM1327685v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.683 Poland: Poznan BAL MiSeq National Medicines Institute 82.0x 99.02 0.2 99.99 0.91 GCF_013276855.1 VMLU01 2082 2196 2196 66 3 44 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277055.1 HMT-425 2877 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 2877 126 2148316 39.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/055/GCA_013277055.1_ASM1327705v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582656 SAMN11665884 ASM1327705v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.520 Poland: Bydgoszcz sputum MiSeq National Medicines Institute 67.0x 99.42 0.2 99.99 0.05 GCF_013277055.1 VMME01 2073 2185 2185 67 3 41 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277095.1 HMT-425 812 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 812 114 2166147 39.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/095/GCA_013277095.1_ASM1327709v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582654 SAMN11665882 ASM1327709v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.490 Poland: Suwalki BAL MiSeq National Medicines Institute 108.0x 99.62 0.2 99.99 0.1 GCF_013277095.1 VMMG01 2090 2209 2209 70 4 44 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277175.1 HMT-425 3167 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 3167 120 2164398 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/175/GCA_013277175.1_ASM1327717v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582649 SAMN11665877 ASM1327717v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.413 Poland: Wroclaw nasopharynx MiSeq National Medicines Institute 82.0x 99.42 0.27 99.97 0.16 GCF_013277175.1 VMML01 2100 2215 2215 67 3 44 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277255.1 HMT-425 2154 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 2154 108 2236823 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/255/GCA_013277255.1_ASM1327725v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582650 SAMN11665878 ASM1327725v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.430 Poland: Gdansk BAL MiSeq National Medicines Institute 97.0x 99.82 0.2 99.98 0.21 GCF_013277255.1 VMMK01 2180 2309 2309 72 3 53 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277265.1 HMT-425 1013 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 1013 113 2203151 39.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/265/GCA_013277265.1_ASM1327726v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582645 SAMN11665873 ASM1327726v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.350 Poland: Gdansk BAL MiSeq National Medicines Institute 66.0x 99.62 0.2 100 0.12 GCF_013277265.1 VMMP01 2131 2250 2250 67 3 48 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277285.1 HMT-425 339 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 339 136 2191367 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/285/GCA_013277285.1_ASM1327728v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582643 SAMN11665871 ASM1327728v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.320 Poland: Sochaczew sputum MiSeq National Medicines Institute 78.0x 98.53 0.27 99.99 0.2 GCF_013277285.1 VMMR01 2142 2262 2262 65 5 49 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277295.1 HMT-425 477 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 477 119 2166343 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/295/GCA_013277295.1_ASM1327729v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582644 SAMN11665872 ASM1327729v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.337 Poland: Gdansk BAL MiSeq National Medicines Institute 70.0x 99.62 0.2 99.99 0.42 GCF_013277295.1 VMMQ01 2097 2213 2213 70 3 42 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277315.1 HMT-425 2106 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 2106 150 2176032 39.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/315/GCA_013277315.1_ASM1327731v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582642 SAMN11665870 ASM1327731v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.307 Poland: Kolobrzeg sputum MiSeq National Medicines Institute 58.0x 99.52 0.25 100 0.07 GCF_013277315.1 VMMS01 2130 2242 2242 66 4 41 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277355.1 HMT-425 1343 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 1343 116 2235405 39.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/355/GCA_013277355.1_ASM1327735v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582641 SAMN11665869 ASM1327735v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.290 Poland: Suwalki sputum MiSeq National Medicines Institute 77.0x 99.42 0.2 99.99 0.15 GCF_013277355.1 VMMT01 2173 2296 2296 70 3 49 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277375.1 HMT-425 3613 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 3613 145 2216593 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/375/GCA_013277375.1_ASM1327737v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582639 SAMN11665867 ASM1327737v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.257 Poland: Sanok sputum MiSeq National Medicines Institute 79.0x 99.82 0.2 99.99 0.09 GCF_013277375.1 VMMV01 2173 2279 2279 69 3 33 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277425.1 HMT-425 79 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 79 136 2242510 39.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/425/GCA_013277425.1_ASM1327742v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582638 SAMN11665866 ASM1327742v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.243 Poland: Lublin sputum MiSeq National Medicines Institute 75.0x 99.82 0.8 100 0.86 GCF_013277425.1 VMMW01 2180 2303 2303 70 3 49 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013277505.1 HMT-425 k-378 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae k-378 178 2224706 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/277/505/GCA_013277505.1_ASM1327750v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA556140 2582632 SAMN11665860 ASM1327750v1 Scaffold CLC NGS Cell v. 9.01. 2019-05-17T07:21:04.143 Poland: Grajewo sputum MiSeq National Medicines Institute 44.0x 99.74 0.2 100 0.27 GCF_013277505.1 VMNC01 2137 2255 2255 69 3 45 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_013305725.1 HMT-677 S022-V3-A4 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis S022-V3-A4 1 2086958 39.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/305/725/GCA_013305725.1_ASM1330572v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BO PRJNA208927 28037 SAMN11382546 ASM1330572v1 Complete Genome Unicycler v. NOV-2018 2019-04-10T05:42:04.708 United Kingdom saliva Illumina; Oxford Nanopore Universita di Siena 400.0x 93.95 99.82 0.91 100 0.13 GCF_013305725.1 1928 2056 2056 54 12 61 1 Streptococcus_mitis_homd_HMT_677 GCA_013307285.1 HMT-152 CS18 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-152 Streptococcus thermophilus CS18 1 1858890 39.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/307/285/GCA_013307285.1_ASM1330728v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus PRJNA480323 1308 SAMN09635157 ASM1330728v1 Complete Genome SOAPdenovo v. MAY-2018 2018-07-09T21:47:04.343 China traditional fermented milk Illumina; PacBio harbin institute of technology 2552.0x 98.71 99.89 0.15 99.98 0.32 GCF_013307285.1 1941 2104 2104 77 18 67 1 Streptococcus_thermophilus_homd_HMT_152 GCA_013315125.1 HMT-867 UMB1350 Named Cultivated Vaginal (Abundance: High) HMT-867 Gardnerella leopoldii UMB1350 12 1502805 42.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/315/125/GCA_013315125.1_ASM1331512v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium leopoldii PRJNA316969 2702 SAMN15064055 ASM1331512v1 Scaffold Velvet v. 1.2 2020-05-30T21:46:03.903 USA: Maywood, IL urine Illumina HiSeq Loyola University Chicago 78.0x 87.55 100 0 99.9 0.27 GCF_013315125.1 JABUHB01 1130 1192 1192 13 3 45 1 Gardnerella_leopoldii_homd_HMT_867 GCA_013315135.1 HMT-867 UMB0742 Named Cultivated Vaginal (Abundance: High) HMT-867 Gardnerella leopoldii UMB0742 1 1472679 42.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/315/135/GCA_013315135.1_ASM1331513v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium leopoldii PRJNA316969 2792978 SAMN15064058 ASM1331513v1 Contig Velvet v. 1.2 2020-05-30T21:46:03.956 USA: Maywood, IL urine Illumina HiSeq Loyola University Chicago 200.0x 98.86 100 0 99.69 0.14 GCF_013315135.1 JABUHE01 1105 1167 1167 13 3 45 1 Gardnerella_leopoldii_homd_HMT_867 GCA_013315145.1 HMT-868 UMB1698 Named Cultivated Vaginal (Abundance: High) HMT-868 Gardnerella swidsinskii UMB1698 5 1586334 41.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/315/145/GCA_013315145.1_ASM1331514v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium swidsinskii PRJNA316969 2792979 SAMN15064057 ASM1331514v1 Scaffold Velvet v. 1.2 2020-05-30T21:46:03.940 USA: Maywood, IL urine Illumina HiSeq Loyola University Chicago 420.0x 98.61 100 0 99.89 0.38 GCF_013315145.1 JABUHD01 1231 1295 1295 15 3 45 1 Gardnerella_swidsinskii_homd_HMT_868 GCA_013315195.1 HMT-867 UMB1489 Named Cultivated Vaginal (Abundance: High) HMT-867 Gardnerella leopoldii UMB1489 4 1492090 42.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/315/195/GCA_013315195.1_ASM1331519v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium leopoldii PRJNA316969 2792978 SAMN15064056 ASM1331519v1 Scaffold Velvet v. 1.2 2020-05-30T21:46:03.923 USA: Maywood, IL urine Illumina HiSeq Loyola University Chicago 465.0x 98.87 100 0 99.79 0.19 GCF_013315195.1 JABUHC01 1113 1175 1175 13 3 45 1 Gardnerella_leopoldii_homd_HMT_867 GCA_013315215.1 HMT-868 UMB0769 Named Cultivated Vaginal (Abundance: High) HMT-868 Gardnerella swidsinskii UMB0769 5 1552587 42.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/315/215/GCA_013315215.1_ASM1331521v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium swidsinskii PRJNA316969 2702 SAMN15064054 ASM1331521v1 Contig Velvet v. 1.2 2020-05-30T21:46:03.886 USA: Maywood, IL urine Illumina HiSeq Loyola University Chicago 481.0x 87.87 99.93 0 99.97 0.22 GCF_013315215.1 JABUHA01 1199 1262 1262 14 3 45 1 Gardnerella_swidsinskii_homd_HMT_868 GCA_013315255.1 HMT-867 UMB0662 Named Cultivated Vaginal (Abundance: High) HMT-867 Gardnerella leopoldii UMB0662 12 1502587 42.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/315/255/GCA_013315255.1_ASM1331525v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium leopoldii PRJNA316969 2702 SAMN15064053 ASM1331525v1 Scaffold Velvet v. 1.2 2020-05-30T21:46:03.863 USA: Maywood, IL urine Illumina HiSeq Loyola University Chicago 200.0x 87.55 100 0 99.91 0.33 GCF_013315255.1 JABUGZ01 1129 1191 1191 13 3 45 1 Gardnerella_leopoldii_homd_HMT_867 GCA_013332525.2 HMT-873 P-C-F_MAG_00005 Phylotype Uncultivated Oral (Abundance: Scarce) HMT-873 Patescibacteria [C1 O1 F1 G2] bacterium HMT-873 P-C-F_MAG_00005 34 963661 yes 37.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/332/525/GCA_013332525.2_ASM1333252v2 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__BD1-5;f__UBA2023;g__GN02-873;s__GN02-873 sp013332525 PRJNA625082 2044595 SAMN14602653 ASM1333252v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.126 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 68.21 0 96.99 1.03 JABCOP02 1263 1300 1300 1 0 36 0 Patescibacteria__C1_O1_F1_G2__bacterium_HMT_873_homd_HMT_873 GCA_013332955.2 HMT-351 T-D-F_MAG_00010 Phylotype Uncultivated Oral (Abundance: High) HMT-351 Nanosyncoccus sp. HMT-351 T-D-F_MAG_00010 53 725630 yes 41.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/332/955/GCA_013332955.2_ASM1333295v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp013332955 PRJNA625082 2026720 SAMN14602682 ASM1333295v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.593 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 77.43 0 93.25 0.28 JABCPS02 669 709 709 1 1 38 0 Nanosyncoccus_sp_HMT_351_homd_HMT_351 GCA_013332965.2 HMT-364 T-D-F_MAG_00008 Phylotype Uncultivated Oral (Abundance: Scarce) HMT-364 Nanosyncoccus sp. HMT-364 T-D-F_MAG_00008 56 758611 yes 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/332/965/GCA_013332965.2_ASM1333296v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp013332965 PRJNA625082 2026720 SAMN14602681 ASM1333296v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.576 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 80.88 0 92.59 1.86 JABCPR02 708 753 753 1 1 43 0 Nanosyncoccus_sp_HMT_364_homd_HMT_364 GCA_013333055.2 HMT-348 T-C-M_MAG_00008 Phylotype Uncultivated Oral (Abundance: Medium) HMT-348 Parvisynbacter sp. HMT-348 T-C-M_MAG_00008 14 762856 yes 37.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/055/GCA_013333055.2_ASM1333305v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__UBA10027;g__SDRW01;s__SDRW01 sp007845485 PRJNA625082 2026720 SAMN14602679 ASM1333305v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.540 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 65.1 0 95.27 0.02 JABCPP02 740 784 784 3 1 40 0 Parvisynbacter_sp_HMT_348_homd_HMT_348 GCA_013333095.2 HMT-593 T-C-M_MAG_00002 Named Cultivated Oral (Abundance: Medium) HMT-593 Mogibacterium diversum T-C-M_MAG_00002 63 1570902 yes 41.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/095/GCA_013333095.2_ASM1333309v2 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium diversum PRJNA625082 2049035 SAMN14602676 ASM1333309v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.490 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x GCF_013333095.1 JABCPM02 1412 1463 1463 12 0 38 1 Mogibacterium_diversum_homd_HMT_593 GCA_013333135.2 HMT-351 T-B-M_MAG_00012 Phylotype Uncultivated Oral (Abundance: High) HMT-351 Nanosyncoccus sp. HMT-351 T-B-M_MAG_00012 35 738377 yes 40.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/135/GCA_013333135.2_ASM1333313v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp013333135 PRJNA625082 2026720 SAMN14602673 ASM1333313v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.443 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 80.88 0 97.56 0.18 JABCPJ02 691 738 738 3 1 43 0 Nanosyncoccus_sp_HMT_351_homd_HMT_351 GCA_013333155.2 HMT-364 T-C-F_MAG_00008 Phylotype Uncultivated Oral (Abundance: Scarce) HMT-364 Nanosyncoccus sp. HMT-364 T-C-F_MAG_00008 37 826344 yes 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/155/GCA_013333155.2_ASM1333315v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp013332965 PRJNA625082 2026720 SAMN14602674 ASM1333315v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.456 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 63.82 0.09 99.62 0.42 JABCPK02 748 790 790 1 0 41 0 Nanosyncoccus_sp_HMT_364_homd_HMT_364 GCA_013333205.2 HMT-364 T-B-M_MAG_00011 Phylotype Uncultivated Oral (Abundance: Scarce) HMT-364 Nanosyncoccus sp. HMT-364 T-B-M_MAG_00011 72 737067 yes 41.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/205/GCA_013333205.2_ASM1333320v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp013332965 PRJNA625082 2026720 SAMN14602672 ASM1333320v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.426 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 80.02 1.21 94.31 2.64 JABCPI02 666 708 708 1 1 40 0 Nanosyncoccus_sp_HMT_364_homd_HMT_364 GCA_013333235.2 HMT-221 T-B-M_MAG_00008 Unnamed Cultivated Oral (Abundance: Medium) HMT-221 Leptotrichia sp. HMT-221 T-B-M_MAG_00008 107 1977728 yes 29.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/235/GCA_013333235.2_ASM1333323v2 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__JABCPH02;s__JABCPH02 sp013333235 PRJNA625082 104608 SAMN14602671 ASM1333323v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.410 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x GCF_013333235.1 JABCPH02 1774 1825 1825 18 1 31 1 Leptotrichia_sp_HMT_221_homd_HMT_221 GCA_013333295.2 HMT-875 T-B-F_MAG_00004 Phylotype Uncultivated Oral (Abundance: Medium) HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 T-B-F_MAG_00004 42 912690 yes 35.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/295/GCA_013333295.2_ASM1333329v2 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333295 PRJNA625082 2044938 SAMN14602667 ASM1333329v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.346 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 72.49 1.12 94.29 1.25 JABCPD02 1699 1740 1740 3 0 37 1 Absconditicoccaceae__G1__bacterium_HMT_875_homd_HMT_875 GCA_013333295.2 HMT-875 T-B-F_MAG_00004 Phylotype Uncultivated Oral (Abundance: Medium) HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 T-B-F_MAG_00004 42 912690 yes 35.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/295/GCA_013333295.2_ASM1333329v2 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333295 PRJNA625082 2044938 SAMN14602667 ASM1333329v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.346 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 72.49 1.12 94.29 1.25 JABCPD02 1699 1740 1740 3 0 37 1 Absconditicoccaceae__G1_HMT_345_874_875 GCA_013333375.2 HMT-364 T-A-F_MAG_00015 Phylotype Uncultivated Oral (Abundance: Scarce) HMT-364 Nanosyncoccus sp. HMT-364 T-A-F_MAG_00015 53 635716 yes 41.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/375/GCA_013333375.2_ASM1333337v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp013333375 PRJNA625082 2026720 SAMN14602662 ASM1333337v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.266 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 57.64 0.21 75.96 1.71 JABCOY02 585 0 0 3 1 36 0 Nanosyncoccus_sp_HMT_364_homd_HMT_364 GCA_013333405.2 HMT-401 T-A-F_MAG_00016 Unnamed Cultivated Oral (Abundance: No Data) HMT-401 Nanogingivalis sp. HMT-401 T-A-F_MAG_00016 74 607771 yes 35.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/405/GCA_013333405.2_ASM1333340v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanogingivalaceae;g__Nanogingivalis;s__Nanogingivalis sp013333405 PRJNA625082 2026720 SAMN14602663 ASM1333340v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.283 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 76.92 0.1 88.35 0 JABCOZ02 608 640 640 2 0 30 0 GCA_013333415.2 HMT-364 T-A-F_MAG_00011 Phylotype Uncultivated Oral (Abundance: Scarce) HMT-364 Nanosyncoccus sp. HMT-364 T-A-F_MAG_00011 31 778783 yes 41.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/415/GCA_013333415.2_ASM1333341v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp016112465 PRJNA625082 2026720 SAMN14602660 ASM1333341v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.236 USA: Massachusetts tongue scraping Illumina NextSeq Marine Biological Laboratory 50.0x 82.6 0.86 98.93 1.94 JABCOW02 711 757 757 1 1 44 0 Nanosyncoccus_sp_HMT_364_homd_HMT_364 GCA_013333485.2 HMT-955 P-C-M_MAG_00013 Unnamed Cultivated in coculture Oral (Abundance: Scarce) HMT-955 Saccharimonas sicarius P-C-M_MAG_00013 21 783709 yes 46.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/485/GCA_013333485.2_ASM1333348v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp010202265 PRJNA625082 2026720 SAMN14602656 ASM1333348v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.173 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 63.12 2.24 98.54 1.13 JABCOS02 789 829 829 5 1 34 0 Saccharimonas_sicarius_homd_HMT_955 GCA_013333495.2 HMT-391 P-C-M_MAG_00011 Unnamed Cultivated in coculture Oral (Abundance: No Data) HMT-391 Saccharimonadales [F2 G1] bacterium HMT-391 P-C-M_MAG_00011 17 712298 yes 48.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/495/GCA_013333495.2_ASM1333349v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__VGLK01;g__VGLK01;s__VGLK01 sp013333495 PRJNA625082 2026720 SAMN14602655 ASM1333349v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.160 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 63.82 2.56 93.56 0.19 JABCOR02 691 730 730 3 1 35 0 GCA_013333515.2 HMT-356 P-C-M_MAG_00010 Named NVP Uncultivated Oral (Abundance: Medium) HMT-356 Nanoperiomorbus periodonticus P-C-M_MAG_00010 53 808514 yes 50.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/515/GCA_013333515.2_ASM1333351v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanoperiomorbaceae;g__Nanoperiomorbus;s__Nanoperiomorbus sp013333515 PRJNA625082 2026720 SAMN14602654 ASM1333351v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.143 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 62.96 0.85 99.01 0.08 JABCOQ02 721 768 768 1 2 44 0 Nanoperiomorbus_periodonticus_homd_HMT_356 GCA_013333575.2 HMT-348 P-C-F_MAG_00004 Phylotype Uncultivated Oral (Abundance: Medium) HMT-348 Parvisynbacter sp. HMT-348 P-C-F_MAG_00004 47 733643 yes 38.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/575/GCA_013333575.2_ASM1333357v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__UBA10027;g__SDRW01;s__SDRW01 sp007845485 PRJNA625082 2026720 SAMN14602652 ASM1333357v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.110 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 59.12 0.85 88.15 0.5 JABCOO02 723 760 760 2 1 34 0 Parvisynbacter_sp_HMT_348_homd_HMT_348 GCA_013333595.2 HMT-390 P-C-F_MAG_00002 Unnamed Cultivated Oral (Abundance: No Data) HMT-390 Parvisynbacter sp. HMT-390 P-C-F_MAG_00002 30 810727 yes 54.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/595/GCA_013333595.2_ASM1333359v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__UBA10027;g__SDRW01;s__SDRW01 sp013333595 PRJNA625082 2026720 SAMN14602651 ASM1333359v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.096 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 61.97 0.85 95.23 0 JABCON02 810 858 858 3 1 44 0 GCA_013333605.2 HMT-874 P-B-M_MAG_00018 Phylotype Uncultivated Oral (Abundance: Medium) HMT-874 Absconditicoccaceae [G1] bacterium HMT-874 P-B-M_MAG_00018 61 999858 yes 35.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/605/GCA_013333605.2_ASM1333360v2 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333605 PRJNA625082 2044938 SAMN14602650 ASM1333360v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.080 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 73.03 1.12 97.35 2.99 JABCOM02 1907 1946 1946 1 2 36 0 Absconditicoccaceae__G1__bacterium_HMT_874_homd_HMT_874 GCA_013333605.2 HMT-874 P-B-M_MAG_00018 Phylotype Uncultivated Oral (Abundance: Medium) HMT-874 Absconditicoccaceae [G1] bacterium HMT-874 P-B-M_MAG_00018 61 999858 yes 35.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/605/GCA_013333605.2_ASM1333360v2 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333605 PRJNA625082 2044938 SAMN14602650 ASM1333360v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.080 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 73.03 1.12 97.35 2.99 JABCOM02 1907 1946 1946 1 2 36 0 Absconditicoccaceae__G1_HMT_345_874_875 GCA_013333625.2 HMT-346 P-B-M_MAG_00013 Phylotype Uncultivated Oral (Abundance: High) HMT-346 Saccharimonas sp. HMT-346 P-B-M_MAG_00013 45 829076 yes 48.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/625/GCA_013333625.2_ASM1333362v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp013333625 PRJNA625082 2026720 SAMN14602649 ASM1333362v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.066 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 61.73 1.85 88.74 0.11 JABCOL02 832 881 881 4 1 44 0 Saccharimonas_sp_HMT_346_homd_HMT_346 GCA_013333645.2 HMT-394 P-B-M_MAG_00010 Unnamed Cultivated in coculture Oral (Abundance: No Data) HMT-394 Saccharimonas sp. HMT-394 P-B-M_MAG_00010 26 992849 yes 52.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/645/GCA_013333645.2_ASM1333364v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp013333645 PRJNA625082 2026720 SAMN14602648 ASM1333364v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.050 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 60.23 1.71 98.23 0.35 JABCOK02 953 1002 1002 3 1 45 0 Saccharimonas_sp_HMT_394_homd_HMT_394 GCA_013333675.2 HMT-349 P-B-M_MAG_00009 Phylotype Uncultivated Oral (Abundance: Medium) HMT-349 Saccharimonas sp. HMT-349 P-B-M_MAG_00009 42 854011 yes 48.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/675/GCA_013333675.2_ASM1333367v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp013333675 PRJNA625082 2026720 SAMN14602647 ASM1333367v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.033 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 64.81 0.93 97.82 1.31 JABCOJ02 841 886 886 4 1 40 0 Saccharimonas_sp_HMT_349_homd_HMT_349 GCA_013333695.2 HMT-488 P-B-F_MAG_00030 Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur P-B-F_MAG_00030 31 759152 yes 51.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/695/GCA_013333695.2_ASM1333369v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp013333695 PRJNA625082 2026720 SAMN14602645 ASM1333369v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.000 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 61.67 0 84.03 0.73 JABCOH02 764 0 0 3 1 38 0 Nanosynbacter_fur_homd_HMT_488 GCA_013333705.2 HMT-329 P-B-M_MAG_00008 Named Cultivated Oral (Abundance: High) HMT-329 Capnocytophaga leadbetteri P-B-M_MAG_00008 133 2251100 yes 40.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/705/GCA_013333705.2_ASM1333370v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga leadbetteri_A PRJNA625082 44737 SAMN14602646 ASM1333370v2 Contig megahit v. 1.0.6 2020-04-15T15:40:05.016 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 93.65 1.59 89.02 2.18 GCF_013333705.1 JABCOI02 2004 2043 2043 4 0 34 1 Capnocytophaga_leadbetteri_homd_HMT_329 GCA_013333735.2 HMT-194 P-B-F_MAG_00022 Named Cultivated Oral (Abundance: High) HMT-194 Arachnia rubra P-B-F_MAG_00022 122 2885146 yes 64.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/735/GCA_013333735.2_ASM1333373v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia rubra PRJNA625082 1977903 SAMN14602643 ASM1333373v2 Contig megahit v. 1.0.6 2020-04-15T15:40:04.970 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 89.44 0.79 88.58 0.68 JABCOF02 2586 2653 2653 18 1 46 2 Arachnia_rubra_homd_HMT_194 GCA_013333755.2 HMT-871 P-B-F_MAG_00016 Phylotype Uncultivated Oral (Abundance: Low) HMT-871 Patescibacteria [C1 O1 F1 G1] bacterium HMT-871 P-B-F_MAG_00016 21 1010868 yes 25.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/755/GCA_013333755.2_ASM1333375v2 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__BD1-5;f__UBA6164;g__GN02-872;s__GN02-872 sp002761215 PRJNA625082 2044595 SAMN14602641 ASM1333375v2 Contig megahit v. 1.0.6 2020-04-15T15:40:04.936 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 76.97 1.12 88.95 0.04 JABCOD02 1117 1147 1147 1 0 29 0 Patescibacteria__C1_O1_F1_G1__bacterium_HMT_871_homd_HMT_871 GCA_013333755.2 HMT-871 P-B-F_MAG_00016 Phylotype Uncultivated Oral (Abundance: Low) HMT-871 Patescibacteria [C1 O1 F1 G1] bacterium HMT-871 P-B-F_MAG_00016 21 1010868 yes 25.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/755/GCA_013333755.2_ASM1333375v2 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__BD1-5;f__UBA6164;g__GN02-872;s__GN02-872 sp002761215 PRJNA625082 2044595 SAMN14602641 ASM1333375v2 Contig megahit v. 1.0.6 2020-04-15T15:40:04.936 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 76.97 1.12 88.95 0.04 JABCOD02 1117 1147 1147 1 0 29 0 Patescibacteria__C1_O1_F1_G1_HMT_871_872 GCA_013333765.2 HMT-394 P-B-F_MAG_00026 Unnamed Cultivated in coculture Oral (Abundance: No Data) HMT-394 Saccharimonas sp. HMT-394 P-B-F_MAG_00026 124 899001 yes 52.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/765/GCA_013333765.2_ASM1333376v2 Undefined PRJNA625082 2026720 SAMN14602644 ASM1333376v2 Contig megahit v. 1.0.6 2020-04-15T15:40:04.983 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x JABCOG02 905 945 945 2 0 38 0 Saccharimonas_sp_HMT_394_homd_HMT_394 GCA_013333795.2 HMT-346 P-B-F_MAG_00020 Phylotype Uncultivated Oral (Abundance: High) HMT-346 Saccharimonas sp. HMT-346 P-B-F_MAG_00020 98 775906 yes 47.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/795/GCA_013333795.2_ASM1333379v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp013333795 PRJNA625082 2026720 SAMN14602642 ASM1333379v2 Contig megahit v. 1.0.6 2020-04-15T15:40:04.953 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 60.22 0 81.51 1.64 JABCOE02 813 0 0 4 0 39 0 Saccharimonas_sp_HMT_346_homd_HMT_346 GCA_013333815.2 HMT-348 P-B-F_MAG_00010 Phylotype Uncultivated Oral (Abundance: Medium) HMT-348 Parvisynbacter sp. HMT-348 P-B-F_MAG_00010 20 784149 yes 38.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/815/GCA_013333815.2_ASM1333381v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__UBA10027;g__SDRW01;s__SDRW01 sp007845485 PRJNA625082 2026720 SAMN14602640 ASM1333381v2 Contig megahit v. 1.0.6 2020-04-15T15:40:04.923 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 64.25 0 94.32 0.26 JABCOC02 789 832 832 3 1 39 0 Parvisynbacter_sp_HMT_348_homd_HMT_348 GCA_013333845.2 HMT-346 P-A-F_MAG_00015 Phylotype Uncultivated Oral (Abundance: High) HMT-346 Saccharimonas sp. HMT-346 P-A-F_MAG_00015 63 761017 yes 47.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/845/GCA_013333845.2_ASM1333384v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp013333845 PRJNA625082 2026720 SAMN14602637 ASM1333384v2 Contig megahit v. 1.0.6 2020-04-15T15:40:04.876 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 60.8 1.85 90.4 0.49 JABCNZ02 745 791 791 5 1 40 0 Saccharimonas_sp_HMT_346_homd_HMT_346 GCA_013333895.2 HMT-194 P-A-F_MAG_00013 Named Cultivated Oral (Abundance: High) HMT-194 Arachnia rubra P-A-F_MAG_00013 214 2996074 yes 64.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/895/GCA_013333895.2_ASM1333389v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia rubra PRJNA625082 1977903 SAMN14602636 ASM1333389v2 Contig megahit v. 1.0.6 2020-04-15T15:40:04.860 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 92.84 1.35 93.45 0.77 JABCNY02 2716 2782 2782 17 2 45 2 Arachnia_rubra_homd_HMT_194 GCA_013333915.2 HMT-874 P-A-F_MAG_00010 Phylotype Uncultivated Oral (Abundance: Medium) HMT-874 Absconditicoccaceae [G1] bacterium HMT-874 P-A-F_MAG_00010 17 1012013 yes 35.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/915/GCA_013333915.2_ASM1333391v2 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333605 PRJNA625082 2044938 SAMN14602635 ASM1333391v2 Contig megahit v. 1.0.6 2020-04-15T15:40:04.840 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 71.91 2.25 91.72 3.66 JABCNX02 1999 2036 2036 1 2 34 0 Absconditicoccaceae__G1__bacterium_HMT_874_homd_HMT_874 GCA_013333915.2 HMT-874 P-A-F_MAG_00010 Phylotype Uncultivated Oral (Abundance: Medium) HMT-874 Absconditicoccaceae [G1] bacterium HMT-874 P-A-F_MAG_00010 17 1012013 yes 35.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/915/GCA_013333915.2_ASM1333391v2 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333605 PRJNA625082 2044938 SAMN14602635 ASM1333391v2 Contig megahit v. 1.0.6 2020-04-15T15:40:04.840 USA: Massachusetts dental plaque Illumina NextSeq Marine Biological Laboratory 50.0x 71.91 2.25 91.72 3.66 JABCNX02 1999 2036 2036 1 2 34 0 Absconditicoccaceae__G1_HMT_345_874_875 GCA_013343115.1 HMT-758 FDAARGOS_770 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis FDAARGOS_770 1 2358846 43.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/343/115/GCA_013343115.1_ASM1334311v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_H PRJNA231221 1305 SAMN11056485 ASM1334311v1 Complete Genome Canu v. 1.7 2019-03-05T13:52:08.246 USA:VA missing Pacbio; Illumina US Food and Drug Administration 1678.5x 95.14 100 0.37 99.99 0.32 GCF_013343115.1 2245 2351 2351 33 12 60 1 Streptococcus_sanguinis_homd_HMT_758 GCA_013343135.1 HMT-343 FDAARGOS_789 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-343 Achromobacter xylosoxidans FDAARGOS_789 1 6806438 67.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/343/135/GCA_013343135.1_ASM1334313v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter;s__Achromobacter xylosoxidans PRJNA231221 85698 SAMN11056504 ASM1334313v1 Complete Genome Canu v. 1.4 2019-03-05T13:52:08.613 Germany: Braunschweig unknown Pacbio; Illumina US Food and Drug Administration 591.8x 99.99 99.53 0.58 100 1.47 GCF_013343135.1 6125 6233 6233 33 10 64 1 Achromobacter_xylosoxidans_homd_HMT_343 GCA_013344645.1 HMT-604 111540027-2 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-604 Enterococcus faecalis 111540027-2 1 2937521 37.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/344/645/GCA_013344645.1_ASM1334464v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis PRJNA587161 1351 SAMN13182396 ASM1334464v1 Complete Genome Unicycler v. v.0.4.4 2019-11-01T17:52:04.286 USA:International Space Statio Surface Illumina HiSeq; Oxford Nanopore MiniION Massachusetts Institute of Technology 99.18 99.63 0 100 0.49 GCF_013344645.1 2795 2949 2949 78 12 63 1 Enterococcus_faecalis_homd_HMT_604 GCA_013347325.1 HMT-027 FDAARGOS_639 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-027 Cupriavidus gilardii FDAARGOS_639 3 5760010 67.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/347/325/GCA_013347325.1_ASM1334732v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus;s__Cupriavidus gilardii PRJNA231221 82541 SAMN11056354 ASM1334732v1 Complete Genome canu v. 1.4 2019-03-05T13:52:05.800 USA: KY clinical isolate Pacbio; Illumina US Food and Drug Administration 656.8x 98.63 99.89 1.63 100 0.25 GCF_013347325.1 5104 5210 5210 24 12 69 1 Cupriavidus_gilardii_homd_HMT_027 GCA_013357445.1 HMT-676 S74-1(++)-2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-676 Proteus mirabilis S74-1(++)-2 1 4029664 39.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/357/445/GCA_013357445.1_ASM1335744v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus;s__Proteus mirabilis PRJNA631894 584 SAMN14896267 ASM1335744v1 Complete Genome Canu v. V1.5 2020-05-12T05:56:05.090 China: Shanghai Panthera tigris Amoyensis facel Oxford Nanopore microbial pathogenic ecology group 279.6x 96.79 100 0 100 0.38 GCF_013357445.1 3588 3764 3764 71 22 82 1 Proteus_mirabilis_homd_HMT_676 GCA_013364435.1 HMT-127 FDAARGOS_748 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis FDAARGOS_748 5 2338044 31.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/364/435/GCA_013364435.1_ASM1336443v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA231221 1290 SAMN11056463 ASM1336443v1 Chromosome canu v. 1.4 2019-03-05T13:52:07.823 USA:MN clinical isolate Pacbio; Illumina US Food and Drug Administration 3258.0x 99.11 99.38 1.67 100 1.46 GCF_013364435.1 2276 2424 2424 64 19 64 1 Staphylococcus_hominis_homd_HMT_127 GCA_013367855.1 HMT-632 FBG Named Cultivated Vaginal (Abundance: Medium) HMT-632 Metamycoplasma hominis FBG 1 780024 26.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/367/855/GCA_013367855.1_ASM1336785v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma hominis PRJNA429440 2098 SAMN15042587 ASM1336785v1 Complete Genome Canu v. 1.6 2020-05-28T03:59:04.910 Missing Nanopore + Illumina University Hospital of Dusseldorf 4541.0x 97.87 80.7 0 99.38 0.39 GCF_013367855.1 1335 1376 1376 3 4 33 1 Metamycoplasma_hominis_homd_HMT_632 GCA_013367975.1 HMT-632 SS25 Named Cultivated Vaginal (Abundance: Medium) HMT-632 Metamycoplasma hominis SS25 1 672843 27.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/367/975/GCA_013367975.1_ASM1336797v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma hominis PRJNA429440 2098 SAMN15042593 ASM1336797v1 Complete Genome Canu v. 1.6 2020-05-28T03:59:05.080 Missing Nanopore + Illumina University Hospital of Dusseldorf 1088.0x 97.94 80.03 0 99.24 0 GCF_013367975.1 1113 1155 1155 3 5 33 1 Metamycoplasma_hominis_homd_HMT_632 GCA_013368015.1 HMT-632 SP10291 Named Cultivated Vaginal (Abundance: Medium) HMT-632 Metamycoplasma hominis SP10291 1 750518 26.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/368/015/GCA_013368015.1_ASM1336801v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma hominis PRJNA429440 2098 SAMN15042595 ASM1336801v1 Complete Genome Canu v. 1.6 2020-05-28T03:59:05.113 Missing Nanopore + Illumina University Hospital of Dusseldorf 749.0x 97.98 80.03 0 99.36 0.3 GCF_013368015.1 1250 1291 1291 3 4 33 1 Metamycoplasma_hominis_homd_HMT_632 GCA_013368035.1 HMT-632 SP3615 Named Cultivated Vaginal (Abundance: Medium) HMT-632 Metamycoplasma hominis SP3615 1 715990 27.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/368/035/GCA_013368035.1_ASM1336803v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma hominis PRJNA429440 2098 SAMN15042596 ASM1336803v1 Complete Genome HGAP4 v. 4 2020-05-28T03:59:05.130 Missing PacBio University Hospital of Dusseldorf 10401.0x 97.81 80.7 1.13 99.74 0.29 GCF_013368035.1 1182 1224 1224 4 4 33 1 Metamycoplasma_hominis_homd_HMT_632 GCA_013372125.1 HMT-580 ATCC 35224 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus ATCC 35224 1 1974918 44.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/372/125/GCA_013372125.1_ASM1337212v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA633569 200 SAMN14886871 ASM1337212v1 Complete Genome Newbler v. 2.6 2020-05-11T11:18:05.283 USA: Massachusetts Human, jaw abscess PacBio; Illumina HiSeq USDA, ARS, WRRC 533.0x 99.99 99.51 0.37 99.72 0.07 GCF_013372125.1 1919 1977 1977 5 6 46 1 Campylobacter_curvus_homd_HMT_580 GCA_013372225.1 HMT-842 LMG 6451 Named Cultivated Skin (Abundance: Medium) HMT-842 Campylobacter ureolyticus LMG 6451 1 1820334 28.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/372/225/GCA_013372225.1_ASM1337222v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B ureolyticus PRJNA633574 827 SAMN14887001 ASM1337222v1 Complete Genome Newbler v. 2.6 2020-05-11T11:18:07.846 Canada: Alberta, Edmonton amniotic fluid PacBio; Illumina MiSeq USDA, ARS, WRRC 797.0x 99.99 98.95 0 100 0.12 GCF_013372225.1 1795 1857 1857 6 8 47 1 Campylobacter_ureolyticus_homd_HMT_842 GCA_013378335.1 HMT-758 CGMH010 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis CGMH010 1 2349491 42.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/378/335/GCA_013378335.1_ASM1337833v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_I PRJNA544156 1305 SAMN11812007 ASM1337833v1 Complete Genome HGAP v. AUG-2018 2019-05-22T01:09:03.707 Taiwan: Taoyuan blood PacBio Chang Gung University 190.0x 93.84 99.56 0 99.01 1.82 2346 2453 2453 35 12 59 1 Streptococcus_sanguinis_homd_HMT_758 GCA_013378355.1 HMT-758 CGMH058 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis CGMH058 1 2342565 42.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/378/355/GCA_013378355.1_ASM1337835v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_I PRJNA541204 1305 SAMN11579693 ASM1337835v1 Complete Genome HGAP v. AUG-2018 2019-05-06T03:07:03.933 Taiwan:Taoyuan city blood specimen PacBio Chang Gung University 254.0x 93.78 99.44 0 99.99 0.57 GCF_013378355.1 2317 2446 2446 56 12 60 1 Streptococcus_sanguinis_homd_HMT_758 GCA_013391365.1 HMT-854 LB_tupeA Named Cultivated Oral (Abundance: Scarce) HMT-854 Ralstonia pickettii LB_tupeA 11 5320276 63.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/391/365/GCA_013391365.1_ASM1339136v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;s__Ralstonia pickettii_D PRJNA641460 329 SAMN15353873 ASM1339136v1 Contig ABySS v. 2.1.5; CAP3 v. 02/10/15 2020-06-23T21:18:03.523 Brazil: Amazon State Water Lake Illumina HiSeq Federal University of Amazonas 250.0x 95.3 99.94 0 99.99 0.04 GCF_013391365.1 JACAWZ01 4929 5028 5028 39 6 53 1 Ralstonia_pickettii_homd_HMT_854 GCA_013393365.1 HMT-156 T1-7 Named Cultivated Oral (Abundance: High) HMT-156 Veillonella nakazawae T1-7 1 2097818 38.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/393/365/GCA_013393365.1_ASM1339336v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella nakazawae PRJDB3830 2682456 SAMD00199103 ASM1339336v1 Complete Genome Unicycler v. 0.4.8 2020-06-23T01:00:31.483 Japan:Hokkaido Illumina MiSeq; GridION X5 Health Sciences University of Hokkaido 250.0x 99.8 0 99.99 0.13 GCF_013393365.1 1892 1971 1971 18 12 48 1 Veillonella_nakazawae_homd_HMT_156 GCA_013394085.1 HMT-608 DSM 20052 Named Cultivated Oral (Abundance: Scarce) HMT-608 Limosilactobacillus fermentum DSM 20052 1 1887974 52.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/085/GCA_013394085.1_ASM1339408v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus fermentum PRJNA545488 1613 SAMN11893902 ASM1339408v1 Chromosome Unicycler v. 0.4.4 2019-05-30T14:29:03.360 USA Fermented beets PacBio; Illumina MiSeq North Carolina State University 125.0x 99.98 99.18 0.73 99.93 0.13 GCF_013394085.1 1841 1940 1940 25 15 59 0 Limosilactobacillus_fermentum_homd_HMT_608 GCA_013394405.1 HMT-641 2018-Y40 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 2018-Y40 1 1957393 38.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/405/GCA_013394405.1_ASM1339440v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_H PRJDB9463 727 SAMD00210359 ASM1339440v1 Complete Genome RS HGAP assembly v. 3.0 2020-06-11T01:00:58.320 not applicable PacBioRSII Tokyo University of Pharmacy and Life Sciences 386.0x 97.08 99.43 0 100 0.04 GCF_013394405.1 1910 2023 2023 36 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_013394695.1 HMT-061 F0704 Named Cultivated Oral (Abundance: Medium) HMT-061 Streptococcus infantis clade-061 F0704 1 1765730 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/695/GCA_013394695.1_ASM1339469v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp013394695 PRJNA282954 712623 SAMN15358107 ASM1339469v1 Complete Genome HGAP v. 2 2020-06-24T14:27:05.713 USA: Cambridge, Massachusetts tongue oral cavity PacBio RS II The Forsyth Institute 628.0x 100 2.37 100 0.81 GCF_013394695.1 1678 1789 1789 36 12 61 2 Streptococcus_infantis_HMT_061_431_444_638 GCA_013394695.1 HMT-061 F0704 Named Cultivated Oral (Abundance: Medium) HMT-061 Streptococcus infantis clade-061 F0704 1 1765730 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/695/GCA_013394695.1_ASM1339469v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp013394695 PRJNA282954 712623 SAMN15358107 ASM1339469v1 Complete Genome HGAP v. 2 2020-06-24T14:27:05.713 USA: Cambridge, Massachusetts tongue oral cavity PacBio RS II The Forsyth Institute 628.0x 100 2.37 100 0.81 GCF_013394695.1 1678 1789 1789 36 12 61 2 Streptococcus_infantis_clade_061_homd_HMT_061 GCA_013394715.1 HMT-169 F0496 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 F0496 1 3040651 68.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/715/GCA_013394715.1_ASM1339471v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA282954 712116 SAMN15358582 ASM1339471v1 Complete Genome HGAP v. 4 2020-06-24T15:28:05.826 USA: Boston,MA sub-gingival plaque oral cavity PacBio Sequel The Forsyth Institute 119.0x 100 0.47 100 0.06 GCF_013394715.1 2483 2558 2558 12 9 53 1 Actinomyces_oris_clade_169_homd_HMT_169 GCA_013394715.1 HMT-169 F0496 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 F0496 1 3040651 68.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/715/GCA_013394715.1_ASM1339471v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA282954 712116 SAMN15358582 ASM1339471v1 Complete Genome HGAP v. 4 2020-06-24T15:28:05.826 USA: Boston,MA sub-gingival plaque oral cavity PacBio Sequel The Forsyth Institute 119.0x 100 0.47 100 0.06 GCF_013394715.1 2483 2558 2558 12 9 53 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_013394735.1 HMT-700 W10638 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea W10638 1 2837214 39.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/735/GCA_013394735.1_ASM1339473v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA282954 2748316 SAMN15360087 ASM1339473v1 Complete Genome HGAP v. 2 2020-06-24T16:12:06.160 United Kingdom: London sub-gingival plaque oral cavity PacBio RS II The Forsyth Institute 161.0x 99.29 0.71 99.98 0.47 GCF_013394735.1 2453 2522 2522 9 12 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_013394755.1 HMT-488 HB001 Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur HB001 1 847999 50.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/755/GCA_013394755.1_ASM1339475v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp005697215 PRJNA282954 713059 SAMN15358658 ASM1339475v1 Complete Genome SPAdes v. 3.9 2020-06-24T16:05:05.406 USA: Cambridge, Massachusetts supra-gingival plaque oral cavity Illumina HiSeq The Forsyth Institute 230.0x 63.68 0.85 99.48 0.11 GCF_013394755.1 864 917 917 6 3 44 0 Nanosynbacter_fur_homd_HMT_488 GCA_013394775.1 HMT-102 W9097 Unnamed Cultivated Oral (Abundance: Scarce) HMT-102 Oribacterium sp. HMT-102 W9097 2 2527423 54.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/775/GCA_013394775.1_ASM1339477v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium sp013394775 PRJNA282954 671214 SAMN15358533 ASM1339477v1 Contig HGAP v. 4 2020-06-24T14:59:07.386 United Kingdom: London carious dentine oral cavity PacBio Sequel The Forsyth Institute 164.0x 98.73 0.21 96.04 0.83 GCF_013394775.1 JABXYT01 2178 2289 2289 51 10 49 1 GCA_013394785.1 HMT-700 W10654 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea W10654 2 2584129 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/785/GCA_013394785.1_ASM1339478v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA282954 2748317 SAMN15360088 ASM1339478v1 Contig Flye v. 2.5 2020-06-24T16:19:05.246 United Kingdom: London sub-gingival plaque oral cavity PacBio RS II The Forsyth Institute 178.0x 100 0.48 99.99 0.13 GCF_013394785.1 JABXYW01 2158 2224 2224 7 12 46 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_013394795.1 HMT-223 F0708 Unnamed Cultivated Oral (Abundance: Low) HMT-223 Leptotrichia sp. HMT-223 F0708 4 2584194 31.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/795/GCA_013394795.1_ASM1339479v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia sp013394795 PRJNA282954 712363 SAMN15358583 ASM1339479v1 Contig Flye v. 2.5 2020-06-24T15:38:05.146 USA: Cambridge, Massachusetts supra-gingival plaque oral cavity PacBio RS II The Forsyth Institute 180.0x 100 0.57 99.26 0.16 GCF_013394795.1 JABXYU01 2406 2484 2484 16 15 46 1 GCA_013394805.1 HMT-042 W9173 Named Cultivated Oral (Abundance: Medium) HMT-042 Mogibacterium timidum W9173 2 1859163 44.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/805/GCA_013394805.1_ASM1339480v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium timidum PRJNA282954 35519 SAMN15357426 ASM1339480v1 Contig HGAP v. 4 2020-06-24T11:17:04.783 United Kingdom: London carious dentine tooth oral cavity PacBio Sequel The Forsyth Institute 170.0x 98.94 98.58 0.71 93.56 0.19 GCF_013394805.1 JABXYR01 1645 1717 1717 17 9 45 1 Mogibacterium_timidum_homd_HMT_042 GCA_013394865.1 HMT-417 F0703 Unnamed Cultivated Oral (Abundance: High) HMT-417 Leptotrichia sp. HMT-417 F0703 5 2528148 29.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/865/GCA_013394865.1_ASM1339486v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei_A PRJNA282954 712365 SAMN15358621 ASM1339486v1 Contig Flye v. 2.5 2020-06-24T15:55:05.553 USA: Cambridge, Massachusetts tongue oral cavity PacBio RS II The Forsyth Institute 201.0x 100 1.14 100 0.21 GCF_013394865.1 JABXYV01 2241 2341 2341 39 15 45 1 Leptotrichia_sp_HMT_417_homd_HMT_417 GCA_013394875.1 HMT-081 W5028 Unnamed Cultivated Oral (Abundance: Low) HMT-081 Peptoanaerobacter sp. HMT-081 W5028 5 2575607 30.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/875/GCA_013394875.1_ASM1339487v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter;s__Peptoanaerobacter stomatis_A PRJNA282954 2748177 SAMN15358171 ASM1339487v1 Contig HGAP v. 2 2020-06-24T14:50:04.516 USA: Blacksberg, Virginia sub-gingival plaque oral cavity PacBio RS II The Forsyth Institute 156.0x 99.3 0.7 98.57 1.66 GCF_013394875.1 JABXYS01 2157 2216 2216 22 9 27 1 Peptoanaerobacter_stomatis_homd_HMT_081 GCA_013408445.1 HMT-077 DSM 44922 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum DSM 44922 1 2453172 59.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/408/445/GCA_013408445.1_ASM1340844v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum PRJNA347115 38304 SAMN05878002 ASM1340844v1 Contig HGAP v. smrtlink/7.0.1.66768, HGAP 4 (0.2.1) 2016-10-07T05:24:08.646 missing missing PacBio DOE Joint Genome Institute 970.0x 99.99 99.6 0.22 99.96 0.06 GCF_013408445.1 JACBZL01 2303 2376 2376 8 13 51 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_013410305.1 HMT-595 DSM 45333 Named Cultivated Oral (Abundance: High) HMT-595 Corynebacterium durum DSM 45333 1 2800016 57.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/410/305/GCA_013410305.1_ASM1341030v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium durum PRJNA632267 61592 SAMN14908451 ASM1341030v1 Contig HGAP v. smrtlink/7.0.1.66768, HGAP 4 (0.2.1) 2020-05-12T22:02:20.933 France:Strasbourg, France missing PacBio DOE Joint Genome Institute 353.0x 99.99 99.55 0.45 99.98 0.14 GCF_013410305.1 JACCFR01 2584 2661 2661 15 10 51 1 Corynebacterium_durum_homd_HMT_595 GCA_013414325.1 HMT-537 S9968 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-537 Streptococcus agalactiae S9968 1 2201113 35.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/414/325/GCA_013414325.1_ASM1341432v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae PRJNA639694 1311 SAMN15246708 ASM1341432v1 Complete Genome HGAP v. 3.0 2020-06-16T07:34:05.960 South Korea: Seoul urine PacBio RSII Korea Atomic Energy Research Institute 376.0x 99 99.29 0.53 100 0.13 GCF_013414325.1 2149 2302 2302 51 21 80 1 Streptococcus_agalactiae_homd_HMT_537 GCA_013415405.1 HMT-116 GW2 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis GW2 35 2450181 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/415/405/GCA_013415405.1_ASM1341540v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA643572 29388 SAMN15420189 ASM1341540v1 Contig SPAdes v. 3.1.3 2020-07-01T17:42:03.890 United Kingdom Oral Illumina HiSeq Kings College London 30.0x 98.96 99.81 0.36 99.99 0.18 GCF_013415405.1 JACBYA01 2288 2411 2411 49 10 63 1 Staphylococcus_capitis_homd_HMT_116 GCA_013423845.1 HMT-023 B804 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-023 Delftia acidovorans B804 1 6661314 66.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/423/845/GCA_013423845.1_ASM1342384v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas acidovorans PRJNA645677 80866 SAMN15512205 ASM1342384v1 Complete Genome Celera Assembler v. v. 8.2 2020-07-12T11:02:05.333 China: Xinjiang Uyghur Autonom soil Illumina HiSeq; PacBio RSII Nanjing Tech university 137.0x 97.9 98.73 0.21 100 1.38 GCF_013423845.1 6120 6287 6287 66 15 84 2 Delftia_acidovorans_homd_HMT_023 GCA_013425995.1 HMT-753 5563_17 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-753 Cronobacter sakazakii 5563_17 1 4315383 56.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/425/995/GCA_013425995.1_ASM1342599v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter;s__Cronobacter sakazakii PRJNA645121 28141 SAMN15493123 ASM1342599v1 Complete Genome Unicycler v. 0.4.7 2020-07-09T10:13:11.103 Poland:Wrocaw blood Illumina MiSeq; Oxford Nanopore MiniION National Medicines Institute 50.0x 98.01 99.69 0.19 100 0.07 GCF_013425995.1 3883 4094 4094 105 22 83 1 Cronobacter_sakazakii_homd_HMT_753 GCA_013487865.1 HMT-819 3DG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-819 Lactobacillus johnsonii 3DG 1 1995616 34.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/487/865/GCA_013487865.1_ASM1348786v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii_A PRJNA597131 33959 SAMN13624827 ASM1348786v1 Complete Genome HGAP 4 v. SMRT Link v 5.1.0 2019-12-18T15:00:06.413 USA: North Carolina NCSU Equine Educational Unit PacBio Sequel North Carolina State University 203.0x 95.73 98.45 0 99.99 0.04 GCF_013487865.1 1911 2045 2045 34 21 78 1 Lactobacillus_johnsonii_homd_HMT_819 GCA_013487905.1 HMT-817 1D Named Cultivated Vaginal (Abundance: High) HMT-817 Lactobacillus crispatus 1D 1 2349358 36.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/487/905/GCA_013487905.1_ASM1348790v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus crispatus PRJNA597131 47770 SAMN13624824 ASM1348790v1 Complete Genome HGAP 4 v. SMRT Link v 5.1.0 2019-12-18T15:00:06.360 USA: North Carolina NCSU Equine Educational Unit PacBio Sequel North Carolina State University 219.0x 97.3 99.03 0.19 99.99 0.06 GCF_013487905.1 2351 2480 2480 41 15 72 1 Lactobacillus_crispatus_homd_HMT_817 GCA_013488045.1 HMT-707 SN51445 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SN51445 1 2113832 40.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/488/045/GCA_013488045.1_ASM1348804v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA635656 1891914 SAMN15048516 ASM1348804v1 Chromosome Celera Assembler v. 1.8 2020-05-28T13:56:20.033 Germany blood PacBio Abigail Wexner Research Institute at NCH 407.2x 94.78 99.87 0.2 100 0.03 GCF_013488045.1 2014 2141 2141 52 12 62 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_013488045.1 HMT-707 SN51445 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SN51445 1 2113832 40.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/488/045/GCA_013488045.1_ASM1348804v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA635656 1891914 SAMN15048516 ASM1348804v1 Chromosome Celera Assembler v. 1.8 2020-05-28T13:56:20.033 Germany blood PacBio Abigail Wexner Research Institute at NCH 407.2x 94.78 99.87 0.2 100 0.03 GCF_013488045.1 2014 2141 2141 52 12 62 1 Streptococcus_oralis_HMT_071_398_707 GCA_013488065.1 HMT-707 ATCC 10557 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis ATCC 10557 1 1995690 41.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/488/065/GCA_013488065.1_ASM1348806v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA635656 1891914 SAMN15049614 ASM1348806v1 Chromosome Celera Assembler v. 1.8 2020-05-28T18:15:03.757 unknown blood PacBio Abigail Wexner Research Institute at NCH 100.0x 96.09 99.47 0.2 100 0.01 GCF_013488065.1 1862 1973 1973 37 12 61 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_013488065.1 HMT-707 ATCC 10557 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis ATCC 10557 1 1995690 41.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/488/065/GCA_013488065.1_ASM1348806v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA635656 1891914 SAMN15049614 ASM1348806v1 Chromosome Celera Assembler v. 1.8 2020-05-28T18:15:03.757 unknown blood PacBio Abigail Wexner Research Institute at NCH 100.0x 96.09 99.47 0.2 100 0.01 GCF_013488065.1 1862 1973 1973 37 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_013522795.1 HMT-344 89C1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-344 Pseudomonas luteola 89C1 31 5610094 55.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/522/795/GCA_013522795.1_89C1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B;s__Pseudomonas_B luteola PRJNA606080 1076620 SAMN14085457 89C1 Contig SPAdes v. 3.13.0 2020-02-11T17:19:06.837 USA:Albany indoor dust from athletic faciility office Illumina HiSeq Northwestern University 168.0x 98.03 99.46 1.08 100 0.12 GCF_013522795.1 JAAMQY01 5314 5438 5438 60 7 56 1 Pseudomonas_luteola_homd_HMT_344 GCA_013592015.1 HMT-707 SN64428 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SN64428 2 2107069 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/592/015/GCA_013592015.1_ASM1359201v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA635656 1891914 SAMN15048629 ASM1359201v1 Contig Celera Assembler v. 1.8 2020-05-28T14:02:34.896 Germany blood PacBio Abigail Wexner Research Institute at NCH 745.2x 94.53 99.47 1.59 100 0.37 GCF_013592015.1 JABTEW01 2004 2116 2116 37 12 62 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_013592015.1 HMT-707 SN64428 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SN64428 2 2107069 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/592/015/GCA_013592015.1_ASM1359201v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA635656 1891914 SAMN15048629 ASM1359201v1 Contig Celera Assembler v. 1.8 2020-05-28T14:02:34.896 Germany blood PacBio Abigail Wexner Research Institute at NCH 745.2x 94.53 99.47 1.59 100 0.37 GCF_013592015.1 JABTEW01 2004 2116 2116 37 12 62 1 Streptococcus_oralis_HMT_071_398_707 GCA_013694365.1 HMT-818 CNEI-KCA3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-818 Limosilactobacillus reuteri CNEI-KCA3 1 2085667 39.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/694/365/GCA_013694365.1_ASM1369436v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus reuteri_E PRJNA626394 1598 SAMN14639341 ASM1369436v1 Complete Genome SPAdes v. 3.14.0 2020-04-19T00:39:02.846 Nigeria Illumina MiSeq Nnamdi Azikiwe University 78.0x 97.04 99.46 0.79 100 0.96 GCF_013694365.1 2404 2537 2537 39 16 78 0 Limosilactobacillus_reuteri_homd_HMT_818 GCA_013726395.1 HMT-634 RHBSTW-00916 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-634 Enterobacter hormaechei RHBSTW-00916 4 4849166 55.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/726/395/GCA_013726395.1_ASM1372639v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter hormaechei_C PRJNA605147 158836 SAMN15148743 ASM1372639v1 Complete Genome Unicycler v. v0.4.7 2020-06-05T16:29:19.120 United Kingdom Freshwater sample from upstream of wastewater treatment plant Hybrid: Illumina and OXFORD_NANOPORE The REHAB Consortium 175.1x 99.9 99.92 0.19 100 0.64 GCF_013726395.1 4515 4807 4807 182 25 84 1 Enterobacter_hormaechei_homd_HMT_634 GCA_013747035.1 HMT-634 RHBSTW-00564 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-634 Enterobacter hormaechei RHBSTW-00564 4 4847420 55.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/747/035/GCA_013747035.1_ASM1374703v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter hormaechei_C PRJNA605147 158836 SAMN15148653 ASM1374703v1 Complete Genome Unicycler v. v0.4.7 2020-06-05T16:29:17.750 United Kingdom Freshwater sample from downstream of wastewater treatment plant Hybrid: Illumina and OXFORD_NANOPORE The REHAB Consortium 103.7x 99.87 99.95 0.35 100 0.46 GCF_013747035.1 4553 4851 4851 188 25 84 1 Enterobacter_hormaechei_homd_HMT_634 GCA_013822985.1 HMT-755 DB-B5 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius DB-B5 4 2343299 39.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/822/985/GCA_013822985.1_ASM1382298v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA635659 1304 SAMN15048692 ASM1382298v1 Complete Genome Unicycler v. 0.4.8.0 2020-05-28T14:14:03.907 Canada oral Illumina MiSeq; PacBio Sequel Dose Biosystems 1000.0x 96.42 99.84 0.38 99.99 0.27 GCF_013822985.1 2100 2215 2215 28 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_014054945.1 HMT-764 DSM 17713 Named Cultivated Oral (Abundance: High) HMT-764 Neisseria sicca DSM 17713 1 2864419 50.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/054/945/GCA_014054945.1_ASM1405494v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sicca PRJNA647881 490 SAMN15603184 ASM1405494v1 Complete Genome HGAP v. 4.0 2020-07-22T13:58:04.293 United Kingdom pharyngeal mucosa PacBio Sequel INRS-Institut Armand-Frappier 429.0x 99.97 99.92 0.06 100 0 GCF_014054945.1 2565 2665 2665 21 12 66 1 Neisseria_sicca_homd_HMT_764 GCA_014054985.1 HMT-706 DSM 18271 Named Cultivated Oral (Abundance: High) HMT-706 Kingella oralis DSM 18271 2 2420532 54.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/054/985/GCA_014054985.1_ASM1405498v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_B;s__Kingella_B oralis PRJNA647881 505 SAMN15603182 ASM1405498v1 Complete Genome HGAP v. 4.0 2020-07-22T13:58:04.257 USA supragingival plaque, periodontitis PacBio Sequel INRS-Institut Armand-Frappier 155.0x 99.99 97.92 0.23 100 0.08 GCF_014054985.1 2346 2422 2422 8 12 55 1 Kingella_oralis_homd_HMT_706 GCA_014055025.1 HMT-013 DSM 23338 Named Cultivated Oral (Abundance: Medium) HMT-013 Neisseria bacilliformis DSM 23338 1 2492712 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/055/025/GCA_014055025.1_ASM1405502v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria bacilliformis PRJNA647881 267212 SAMN15603180 ASM1405502v1 Complete Genome HGAP v. 4.0 2020-07-22T13:58:04.213 USA: Texas submandibular wound of a 53-year-old man PacBio Sequel INRS-Institut Armand-Frappier 413.0x 99.97 99.27 0.23 99.99 0 GCF_014055025.1 2302 2447 2447 70 12 62 1 Neisseria_bacilliformis_homd_HMT_013 GCA_014069095.1 HMT-010 FDAARGOS_731 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-010 Acinetobacter radioresistens FDAARGOS_731 6 3377444 41.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/069/095/GCA_014069095.1_ASM1406909v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens PRJNA231221 40216 SAMN11056446 ASM1406909v1 Chromosome SMRT v. 2.3.0, HGAP v. 3 2019-03-05T13:52:07.510 USA:VA normal skin of the right arm Pacbio; Illumina US Food and Drug Administration 1015.7x 98.41 100 0.27 100 0.09 GCF_014069095.1 3179 3298 3298 21 21 76 1 Acinetobacter_radioresistens_homd_HMT_010 GCA_014076415.1 HMT-858 T5-67 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-858 Comamonas testosteroni T5-67 2 5947116 61.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/076/415/GCA_014076415.1_ASM1407641v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas testosteroni_F PRJNA563294 285 SAMN12671326 ASM1407641v1 Complete Genome SMRT Link v. v5.1.0 2019-09-02T07:05:03.747 China biofilm reactor PacBio Sequel Research Center for Eco-Environmental Sciences 100.0x 94.47 99.85 0.72 100 0.11 GCF_014076415.1 5357 5520 5520 43 18 101 1 Comamonas_testosteroni_homd_HMT_858 GCA_014076475.1 HMT-858 R5-28 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-858 Comamonas testosteroni R5-28 2 5975089 61.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/076/475/GCA_014076475.1_ASM1407647v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas testosteroni_B PRJNA563300 285 SAMN12671332 ASM1407647v1 Complete Genome SMRT Link v. v5.1.0 2019-09-02T07:26:03.427 China biofilm reactor PacBio Sequel Research Center for Eco-Environmental Sciences 100.0x 92.94 99.85 1.7 100 0.93 GCF_014076475.1 5369 5540 5540 43 24 103 1 Comamonas_testosteroni_homd_HMT_858 GCA_014109765.1 HMT-740 MSPm1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-740 Pseudomonas oleovorans MSPm1 1 5654212 62.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/109/765/GCA_014109765.1_ASM1410976v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E berkeleyensis PRJNA624308 2726956 SAMN14598238 ASM1410976v1 Chromosome unicycler v. 0.4.8 2020-04-14T16:31:04.456 USA: Berkley, California Mesocom PACBIO None 159.0x 100 99.73 0.18 100 0.43 GCF_014109765.1 5155 5328 5328 90 12 70 1 Pseudomonas_oleovorans_homd_HMT_740 GCA_014131735.1 HMT-861 DSM 20174 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-861 Lactiplantibacillus plantarum DSM 20174 2 3250154 44.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/131/735/GCA_014131735.1_ASM1413173v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum PRJNA531377 1590 SAMN11357169 ASM1413173v1 Complete Genome Flye v. 2.4 2019-04-08T08:00:08.526 not determined PacBio; Illumina MiSeq Helmholtz Centre for Environmental Research - UFZ 146.0x 99.96 99.07 2.78 100 0.53 GCF_014131735.1 3027 3110 0 0 16 66 1 Lactiplantibacillus_plantarum_homd_HMT_861 GCA_014131755.1 HMT-970 DSM 2079 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-970 Bacteroides thetaiotaomicron DSM 2079 2 6304193 42.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/131/755/GCA_014131755.1_ASM1413175v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron PRJNA543750 818 SAMN11776005 ASM1413175v1 Complete Genome Flye v. 2.4 2019-05-20T07:46:04.920 not determined PacBio; Illumina MiSeq Helmholtz Centre for Environmental Research - UFZ 256.0x 99.99 99.41 0.4 99.97 0.67 GCF_014131755.1 4924 5037 5037 27 15 70 1 Bacteroides_thetaiotaomicron_homd_HMT_970 GCA_014138465.1 HMT-001 DSM 21431 Named Cultivated Zoonotic Pathogen (Abundance: Scarce) HMT-001 Bartonella schoenbuchensis DSM 21431 33 1565755 37.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/138/465/GCA_014138465.1_ASM1413846v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Bartonella;s__Bartonella schoenbuchensis PRJNA583269 236402 SAMN13172614 ASM1413846v1 Scaffold SPAdes v. 3.13.0 2019-10-31T16:21:53.410 missing missing Illumina DOE Joint Genome Institute 957.0x 99.59 0 100 0 GCF_014138465.1 JACJIR01 1315 1365 1365 7 3 39 1 Bartonella_schoenbuchensis_homd_HMT_001 GCA_014138885.1 HMT-087 DSM 21948 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-087 Micrococcus luteus DSM 21948 2 2552467 72.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/138/885/GCA_014138885.1_ASM1413888v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus;s__Micrococcus luteus PRJNA616582 566027 SAMN14502432 ASM1413888v1 Contig Flye v. 2.6 2020-03-31T12:59:25.410 China: Yunnan Province missing PacBio DOE Joint Genome Institute 326.0x 99.97 98.7 0.23 100 0 GCF_014138885.1 JACJIK01 2315 2387 2387 14 6 51 1 Micrococcus_luteus_homd_HMT_087 GCA_014161995.1 HMT-834 WP8-S17-CRE-03 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-834 Pseudomonas otitidis WP8-S17-CRE-03 1 6198093 67.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/161/995/GCA_014161995.1_ASM1416199v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas;s__Metapseudomonas otitidis PRJDB6962 319939 SAMD00194592 ASM1416199v1 Complete Genome flye v2.5; minimap v0.2-r124; racon v1.1.0; circlator v1.5.3; Pilon v1.18; SPAdes v3.11.1; A5-miseq 2020-07-21T15:07:55.896 Japan:Tokyo Sequel; NextSeq 500 Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases 256.0x 98.34 99.68 0.96 100 0.1 GCF_014161995.1 5614 5789 5789 88 12 74 1 Pseudomonas_otitidis_homd_HMT_834 GCA_014169215.1 HMT-153 WP5-W18-CRE-01 Named Cultivated Nasal (Abundance: Medium) HMT-153 Klebsiella aerogenes WP5-W18-CRE-01 2 5462605 54.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/169/215/GCA_014169215.1_ASM1416921v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella aerogenes PRJDB6962 548 SAMD00194509 ASM1416921v1 Complete Genome flye v2.5; minimap v0.2-r124; racon v1.1.0; circlator v1.5.3; Pilon v1.18; SPAdes v3.11.1; A5-miseq 2020-07-21T15:07:53.820 Japan:Tokyo Sequel; NextSeq 500 Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases 284.0x 98.73 100 1.16 100 0.49 GCF_014169215.1 5057 5169 0 0 25 86 1 Klebsiella_aerogenes_homd_HMT_153 GCA_014169775.1 HMT-574 WP8-S18-ESBL-07 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-574 Escherichia coli WP8-S18-ESBL-07 3 5125148 50.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/169/775/GCA_014169775.1_ASM1416977v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli PRJDB6962 562 SAMD00194629 ASM1416977v1 Complete Genome flye v2.5; minimap v0.2-r124; racon v1.1.0; circlator v1.5.3; Pilon v1.18; SPAdes v3.11.1; A5-miseq 2020-07-21T15:07:56.867 Japan:Tokyo Sequel; NextSeq 500 Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases 552.0x 99.16 99.97 0.09 100 0.24 GCF_014169775.1 4775 5138 5138 251 22 89 1 Escherichia_coli_homd_HMT_574 GCA_014191555.1 HMT-208 DSM 20582 Named Cultivated Nasal (Abundance: Scarce) HMT-208 Corynebacterium bovis DSM 20582 15 2694851 72.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/191/555/GCA_014191555.1_ASM1419155v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium bovis PRJNA546935 927655 SAMN12024754 ASM1419155v1 Contig HGAP v. smrtlink/6.0.0.47835, HGAP 4 (0.2.1) 2019-06-11T18:03:31.913 USA:Washington, DC missing PacBio DOE Joint Genome Institute 543.0x 99.98 99.32 2.55 99.9 2.04 GCF_014191555.1 JACHWT01 2142 2222 2222 9 9 60 2 Corynebacterium_bovis_homd_HMT_208 GCA_014195585.1 HMT-302 DSM 22548 Named Cultivated Oral (Abundance: Medium) HMT-302 Alloprevotella rava DSM 22548 28 2557292 45.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/195/585/GCA_014195585.1_ASM1419558v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella rava PRJNA546761 671218 SAMN12025113 ASM1419558v1 Contig SPAdes v. 3.13.0 2019-06-11T18:10:51.686 missing missing Illumina DOE Joint Genome Institute 586.0x 99.16 0 99.94 0.06 GCF_014195585.1 JACICA01 2115 2177 2177 5 4 52 1 Alloprevotella_rava_homd_HMT_302 GCA_014195675.1 HMT-747 DSM 8510 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-747 Erythrobacter ramosus DSM 8510 10 3342622 64.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/195/675/GCA_014195675.1_ASM1419567v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter;s__Erythrobacter ramosus PRJNA546753 35811 SAMN12025528 ASM1419567v1 Contig SPAdes v. 3.13.0 2019-06-11T18:12:52.773 Russia: Lake Baykal region missing Illumina DOE Joint Genome Institute 449.0x 99.99 99.54 1.4 99.99 0.31 GCF_014195675.1 JACICE01 3186 3241 3241 7 3 44 1 Erythrobacter_ramosus_homd_HMT_747 GCA_014196225.1 HMT-787 DSM 19673 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-787 Bacteroides pyogenes DSM 19673 43 3394239 46.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/196/225/GCA_014196225.1_ASM1419622v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes_A PRJNA583266 310300 SAMN13172994 ASM1419622v1 Scaffold SPAdes v. 3.13.0 2019-10-31T16:40:04.380 missing missing Illumina DOE Joint Genome Institute 442.0x 99.99 98.87 0.19 99.99 0 GCF_014196225.1 JACIDI01 2791 2886 2886 30 3 61 1 Bacteroides_pyogenes_homd_HMT_787 GCA_014201615.1 HMT-660 DSM 11099 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-660 Aquamicrobium lusatiense DSM 11099 13 4389592 62.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/201/615/GCA_014201615.1_ASM1420161v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium lusatiense PRJNA632322 89772 SAMN14908351 ASM1420161v1 Scaffold SPAdes v. 3.13.0 2020-05-12T21:58:13.723 missing missing Illumina DOE Joint Genome Institute 342.0x 99.3 0.89 100 0.03 GCF_014201615.1 JACHEU01 4063 4160 4160 44 4 48 1 Aquamicrobium_lusatiense_homd_HMT_660 GCA_014202695.1 HMT-457 DSM 17245 Named Cultivated Oral (Abundance: High) HMT-457 Oribacterium sinus DSM 17245 25 2727810 42.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/202/695/GCA_014202695.1_ASM1420269v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium sinus PRJNA632210 237576 SAMN14908368 ASM1420269v1 Scaffold SPAdes v. 3.13.0 2020-05-12T21:58:31.520 missing missing Illumina DOE Joint Genome Institute 378.0x 96.18 0 97.13 0.02 GCF_014202695.1 JACHHH01 2345 2407 2407 19 1 41 1 Oribacterium_sinus_homd_HMT_457 GCA_014204735.1 HMT-830 DSM 2710 Named Cultivated Vaginal (Abundance: Scarce) HMT-830 Mobiluncus mulieris DSM 2710 1 2481783 55.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/204/735/GCA_014204735.1_ASM1420473v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus mulieris PRJNA566818 2052 SAMN12793120 ASM1420473v1 Contig Flye v. 2.6 2019-09-20T04:24:11.373 missing missing PacBio DOE Joint Genome Institute 1599.0x 98.95 99.53 0.95 99.93 1.55 GCF_014204735.1 JACHMA01 2160 2219 2219 6 6 45 2 Mobiluncus_mulieris_homd_HMT_830 GCA_014217355.1 HMT-953 KCOM 1249 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii KCOM 1249 3 2378155 27.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/217/355/GCA_014217355.1_ASM1421735v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA655549 1583098 SAMN15742258 ASM1421735v1 Complete Genome SPAdes v. 3.6.2; SSPACE-PREMIUM v. 2.3.1; GapFiller v. v1-11 2020-08-05T22:38:04.803 South Korea: Gwangju Subgingival dental plaque Illumina HiSeq Korean Collection for Oral Microbiology 394.0x 99.93 100 0 99.99 0.12 GCF_014217355.1 2302 2384 2384 21 15 45 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_014217375.1 HMT-953 KCOM 1253 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii KCOM 1253 2 2363187 27.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/217/375/GCA_014217375.1_ASM1421737v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA655553 1583098 SAMN15742288 ASM1421737v1 Complete Genome SPAdes v. 3.6.2; SSPACE-PREMIUM v. 2.3.1; GapFiller v. v1-11 2020-08-05T22:54:05.470 South Korea: Gwangju Subgingival dental plaque Illumina HiSeq Korean Collection for Oral Microbiology 1347.0x 97.53 100 0 100 0.06 GCF_014217375.1 2163 2246 2246 20 15 47 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_014217915.1 HMT-339 YB324 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-339 Janibacter indicus YB324 1 3369845 71.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/217/915/GCA_014217915.1_ASM1421791v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter;s__Janibacter indicus PRJNA655087 2761047 SAMN15719906 ASM1421791v1 Complete Genome HGAP v. 4 2020-08-04T05:35:03.940 Atlantic Ocean: South Atlantic marine sediment PacBio Sequel Third Institute Of Oceanography,MNR 176.0x 99.77 0 99.99 0.13 GCF_014217915.1 3274 3355 3355 24 6 50 1 Janibacter_indicus_homd_HMT_339 GCA_014250475.1 HMT-138 Marseille-Q3039 Named Cultivated Oral (Abundance: Low) HMT-138 Selenomonas timonae Marseille-Q3039 1 2351879 57.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/250/475/GCA_014250475.1_ASM1425047v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda timonae PRJNA647307 2754044 SAMN15581671 ASM1425047v1 Chromosome SPAdes v. 3.10 2020-07-20T09:54:03.460 France:Marseille Nanopore; Illumina IHU - Mediterranee Infection 33.9x 99.65 0.22 99.94 0.27 GCF_014250475.1 2199 2289 2289 18 12 59 1 Selenomonas_timonae_homd_HMT_138 GCA_014264985.1 HMT-127 IIF3SC-B11-FOX Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SC-B11-FOX 26 2243268 31.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/264/985/GCA_014264985.1_ASM1426498v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815337 ASM1426498v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:08.437 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 586.6x 99.17 99.38 0.85 100 0.05 GCF_014264985.1 JACMXZ01 2187 2290 2290 55 4 43 1 Staphylococcus_hominis_homd_HMT_127 GCA_014264995.1 HMT-127 IIF3SC-B11-P Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SC-B11-P 26 2243589 31.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/264/995/GCA_014264995.1_ASM1426499v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815334 ASM1426499v1 Contig SPAdes v. v3.11.1 2020-08-13T22:13:08.367 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 776.8x 99.18 99.38 0.85 100 0.05 GCF_014264995.1 JACMXW01 2189 2292 2292 55 4 43 1 Staphylococcus_hominis_homd_HMT_127 GCA_014265005.1 HMT-127 IIF3SW-P2-NN Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SW-P2-NN 27 2245297 31.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/265/005/GCA_014265005.1_ASM1426500v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815333 ASM1426500v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:08.343 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 559.8x 99.17 99.38 0.85 100 0.05 GCF_014265005.1 JACMXV01 2191 2294 2294 55 4 43 1 Staphylococcus_hominis_homd_HMT_127 GCA_014265015.1 HMT-127 IIF3SC-B11-OX Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SC-B11-OX 29 2243827 31.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/265/015/GCA_014265015.1_ASM1426501v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815336 ASM1426501v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:08.413 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 136.6x 99.17 99.38 0.85 100 0.05 GCF_014265015.1 JACMXY01 2189 2296 2296 55 4 47 1 Staphylococcus_hominis_homd_HMT_127 GCA_014265025.1 HMT-127 IIF3SW-P2-P Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SW-P2-P 29 2244759 31.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/265/025/GCA_014265025.1_ASM1426502v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815335 ASM1426502v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:08.390 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 596.0x 99.17 99.38 0.85 100 0.05 GCF_014265025.1 JACMXX01 2192 2302 2302 55 4 50 1 Staphylococcus_hominis_homd_HMT_127 GCA_014265085.1 HMT-127 IIF3SW-P1-OX Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SW-P1-OX 27 2244342 31.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/265/085/GCA_014265085.1_ASM1426508v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815329 ASM1426508v1 Contig SPAdes v. v3.11.1 2020-08-13T22:13:08.243 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 622.8x 99.17 99.38 0.85 100 0.05 GCF_014265085.1 JACMXR01 2189 2299 2299 55 4 50 1 Staphylococcus_hominis_homd_HMT_127 GCA_014265095.1 HMT-127 IIF3SW-P2-FOX Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SW-P2-FOX 27 2244014 31.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/265/095/GCA_014265095.1_ASM1426509v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815331 ASM1426509v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:08.300 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 451.3x 99.18 99.38 0.85 100 0.05 GCF_014265095.1 JACMXT01 2187 2290 2290 55 4 43 1 Staphylococcus_hominis_homd_HMT_127 GCA_014265125.1 HMT-127 IIF3SW-P1-RA Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SW-P1-RA 28 2243671 31.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/265/125/GCA_014265125.1_ASM1426512v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815330 ASM1426512v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:08.267 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 494.2x 99.17 99.38 0.85 100 0.05 GCF_014265125.1 JACMXS01 2188 2291 2291 55 4 43 1 Staphylococcus_hominis_homd_HMT_127 GCA_014265215.1 HMT-127 IIF3SW-P1-FOX Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SW-P1-FOX 30 2244373 31.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/265/215/GCA_014265215.1_ASM1426521v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815328 ASM1426521v1 Contig SPAdes v. v3.11.1 2020-08-13T22:13:08.213 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 408.5x 99.18 99.38 0.85 100 0.05 GCF_014265215.1 JACMXQ01 2189 2296 2296 55 4 47 1 Staphylococcus_hominis_homd_HMT_127 GCA_014266065.1 HMT-116 IIF3SC-B2 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis IIF3SC-B2 26 2409841 32.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/065/GCA_014266065.1_ASM1426606v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA657113 29388 SAMN15815261 ASM1426606v1 Contig SPAdes v. v3.11.1 2020-08-13T22:13:06.563 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 488.8x 99.93 99.81 0.06 99.99 0.46 GCF_014266065.1 JACMVC01 2348 2451 2451 56 5 41 1 Staphylococcus_capitis_homd_HMT_116 GCA_014266085.1 HMT-116 IIF3SC-B5 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis IIF3SC-B5 34 2379966 32.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/085/GCA_014266085.1_ASM1426608v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA657113 29388 SAMN15815262 ASM1426608v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:06.587 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 487.5x 99.58 98.69 0.06 99.97 0.39 GCF_014266085.1 JACMVD01 2358 2464 2464 59 5 41 1 Staphylococcus_capitis_homd_HMT_116 GCA_014266385.1 HMT-127 IIF7SC-B2 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF7SC-B2 29 2113506 31.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/385/GCA_014266385.1_ASM1426638v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815278 ASM1426638v1 Contig SPAdes v. v3.11.1 2020-08-13T22:13:07.003 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 866.5x 99.16 99.38 0.57 99.98 0.05 GCF_014266385.1 JACMVT01 2025 2134 2134 53 6 49 1 Staphylococcus_hominis_homd_HMT_127 GCA_014266465.1 HMT-116 IIF4SC-B1A Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis IIF4SC-B1A 19 2407537 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/465/GCA_014266465.1_ASM1426646v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA657113 29388 SAMN15815267 ASM1426646v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:06.700 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 677.7x 98.93 99.81 0.1 99.99 0.08 GCF_014266465.1 JACMVI01 2277 2374 2374 49 5 42 1 Staphylococcus_capitis_homd_HMT_116 GCA_014266475.1 HMT-116 IIF5SC-B2 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis IIF5SC-B2 25 2402589 32.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/475/GCA_014266475.1_ASM1426647v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA657113 29388 SAMN15815274 ASM1426647v1 Contig SPAdes v. v3.11.1 2020-08-13T22:13:06.883 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 503.6x 99.84 99.81 0.34 99.99 0.5 GCF_014266475.1 JACMVP01 2342 2445 2445 55 5 42 1 Staphylococcus_capitis_homd_HMT_116 GCA_014266505.1 HMT-127 IIF4SC-B5 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF4SC-B5 27 2203387 31.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/505/GCA_014266505.1_ASM1426650v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815271 ASM1426650v1 Contig SPAdes v. v3.11.1 2020-08-13T22:13:06.803 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 665.6x 99.19 99.38 0.85 99.99 0.05 GCF_014266505.1 JACMVM01 2145 2257 2257 57 4 50 1 Staphylococcus_hominis_homd_HMT_127 GCA_014266525.1 HMT-127 IIF3SC-B11 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SC-B11 29 2245911 31.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/525/GCA_014266525.1_ASM1426652v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815266 ASM1426652v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:06.677 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 808.9x 99.16 99.38 0.85 100 0.05 GCF_014266525.1 JACMVH01 2195 2300 2300 55 5 44 1 Staphylococcus_hominis_homd_HMT_127 GCA_014266705.1 HMT-127 IIF4SC-B9 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF4SC-B9 29 2207922 31.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/705/GCA_014266705.1_ASM1426670v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815272 ASM1426670v1 Contig SPAdes v. v3.11.1 2020-08-13T22:13:06.830 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 956.2x 99.16 99.38 0.73 99.99 0.03 GCF_014266705.1 JACMVN01 2152 2263 2263 55 6 49 1 Staphylococcus_hominis_homd_HMT_127 GCA_014266725.1 HMT-116 IIF5SC-B1 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis IIF5SC-B1 27 2400623 32.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/725/GCA_014266725.1_ASM1426672v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA657113 29388 SAMN15815273 ASM1426672v1 Contig SPAdes v. v3.11.1 2020-08-13T22:13:06.853 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 460.7x 99.84 99.81 0.34 99.99 0.32 GCF_014266725.1 JACMVO01 2339 2442 2442 55 5 42 1 Staphylococcus_capitis_homd_HMT_116 GCA_014266895.1 HMT-127 IIF3SW-P2 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SW-P2 23 2245723 31.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/895/GCA_014266895.1_ASM1426689v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815248 ASM1426689v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:06.200 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 1129.0x 99.17 99.38 0.85 100 0.05 GCF_014266895.1 JACMUP01 2192 2295 2295 55 4 43 1 Staphylococcus_hominis_homd_HMT_127 GCA_014266935.1 HMT-127 IIF3SW-P1 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF3SW-P1 28 2245823 31.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/266/935/GCA_014266935.1_ASM1426693v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815247 ASM1426693v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:06.163 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 957.6x 99.17 99.38 0.85 100 0.05 GCF_014266935.1 JACMUO01 2192 2302 2302 55 4 50 1 Staphylococcus_hominis_homd_HMT_127 GCA_014267135.1 HMT-076 IIF4SW-P1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri IIF4SW-P1 25 2566482 32.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/267/135/GCA_014267135.1_ASM1426713v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA657113 1292 SAMN15815250 ASM1426713v1 Contig SPAdes v. v3.11.1 2020-08-13T22:13:06.247 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 918.8x 99.64 99.73 0 99.99 0.14 GCF_014267135.1 JACMUR01 2513 2558 0 0 5 39 1 Staphylococcus_warneri_homd_HMT_076 GCA_014267235.1 HMT-116 IIF4SC-B3 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis IIF4SC-B3 20 2424546 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/267/235/GCA_014267235.1_ASM1426723v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA657113 29388 SAMN15815269 ASM1426723v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:06.750 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 760.7x 99.93 99.81 0.06 99.99 0.44 GCF_014267235.1 JACMVK01 2373 2477 2477 56 5 42 1 Staphylococcus_capitis_homd_HMT_116 GCA_014267295.1 HMT-127 IIF4SC-B4 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IIF4SC-B4 29 2198199 31.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/267/295/GCA_014267295.1_ASM1426729v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA657113 1290 SAMN15815270 ASM1426729v1 Scaffold SPAdes v. v3.11.1 2020-08-13T22:13:06.780 USA: International Space Stati Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 988.4x 99.2 99.38 0.85 99.99 0.05 GCF_014267295.1 JACMVL01 2138 2248 2248 57 4 48 1 Staphylococcus_hominis_homd_HMT_127 GCA_014287575.1 HMT-971 NSJ-21 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-971 Bacteroides uniformis NSJ-21 2 4129429 46.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/287/575/GCA_014287575.1_ASM1428757v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis PRJNA656402 2763025 SAMN15806921 ASM1428757v1 Contig SOAPdenovo v. JUL-2013 2020-08-13T01:45:06.073 China:Beijing feces BGISEQ WFCC-MRCEN World Data Centre for Microoganisms(WDCM) 62.0x 99.26 0 99.98 0.28 GCF_014287575.1 JACOOG01 3405 3519 3519 39 12 63 0 Bacteroides_uniformis_homd_HMT_971 GCA_014306175.1 HMT-161 NSJ-78 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula NSJ-78 20 2041457 38.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/306/175/GCA_014306175.1_ASM1430617v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella hominis PRJNA656402 2764330 SAMN15815150 ASM1430617v1 Contig SOAPdenovo v. JUL-2013 2020-08-13T21:24:05.363 China:Beijing feces BGISEQ WFCC-MRCEN World Data Centre for Microoganisms(WDCM) 62.0x 100 0 99.99 0.13 GCF_014306175.1 JACRWI01 1849 1926 1926 22 6 48 1 Veillonella_parvula_homd_HMT_161 GCA_014334295.1 HMT-601 LM087 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis LM087 1 2494355 32.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/334/295/GCA_014334295.1_ASM1433429v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA62349 1282 SAMN04286969 ASM1433429v1 Complete Genome SMRT Portal v. 2.3 2015-11-23T10:31:03.010 USA PacBio RSII NISC - NIH Intramural Sequencing Center 200.0x 98.6 99.67 0 99.99 0.06 GCF_014334295.1 2304 2463 2463 79 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_014335065.1 HMT-031 LK27 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum LK27 60 2587291 58.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/335/065/GCA_014335065.1_LK27 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA395377 2044580 SAMN07741519 LK27 Contig SPAdes v. 3.10.7 2017-10-05T13:26:17.677 USA diabetic foot ulcer sample 6 Illumina NextSeq 500 UPenn 106.0x 100 0 100 0.18 GCF_014335065.1 PDHA01 2247 2319 2319 13 3 55 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_014335175.1 HMT-031 LK23 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum LK23 10 2451386 58.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/335/175/GCA_014335175.1_LK23 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA395377 43765 SAMN07741515 LK23 Contig SPAdes v. 3.10.3 2017-10-05T13:26:17.617 USA Illumina NextSeq 500 UPenn 99.0x 99.99 100 0 100 0.06 GCF_014335175.1 PDHE01 2122 2196 2196 14 4 55 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_014335185.1 HMT-031 LK24 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum LK24 9 2414890 58.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/335/185/GCA_014335185.1_LK24 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA395377 2044583 SAMN07741516 LK24 Contig SPAdes v. 3.10.4 2017-10-05T13:26:17.630 USA healthy umbilicus skin sample 2 Illumina NextSeq 500 UPenn 98.0x 100 0 100 0.1 GCF_014335185.1 PDHD01 2096 2170 2170 15 3 55 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_014338545.1 HMT-045 088AE Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-045 Alkalihalobacillus clausii 088AE 1 4598557 44.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/338/545/GCA_014338545.1_ASM1433854v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Shouchella;s__Shouchella clausii PRJNA481187 79880 SAMN09662694 ASM1433854v1 Chromosome MaSuRCA v. 3.2.2 2018-07-16T01:31:03.033 India: Maharashtra soil Illumina MiSeq; Oxford Nanopore Advanced Enzyme Technologies Limited 400.0x 99.99 98.67 1 100 1.4 GCF_014338545.1 4550 4723 4723 75 22 75 1 Alkalihalobacillus_clausii_homd_HMT_045 GCA_014338595.1 HMT-578 F0329 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus F0329 30 1881435 42.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/338/595/GCA_014338595.1_ASM1433859v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_N PRJNA526114 45634 SAMN12272123 ASM1433859v1 Contig Unicycler v. 0.4.7 2019-07-14T16:07:05.140 USA Oral cavity Illumina HiSeq; Oxford Nanopore Minion University of Nevada, Reno 594.0x 95.07 97.75 0 99.91 0.04 GCF_014338595.1 VKGS01 1833 1904 1904 29 3 38 1 Streptococcus_cristatus_homd_HMT_578 GCA_014435245.1 HMT-948 IMAU 99161 Named Cultivated Oral (Abundance: Scarce) HMT-948 Streptococcus lactarius IMAU 99161 38 2062482 41.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/435/245/GCA_014435245.1_ASM1443524v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus lactarius PRJNA612641 2710601 SAMN14379676 ASM1443524v1 Scaffold SPAdes v. 3.8.2 2020-03-15T00:39:04.236 China: Huhhot breast milk PacBio RSII Inner Mongolia Agricultural University 500.0x 98.47 0.69 99.99 0.05 GCF_014435245.1 JAAPAW01 1922 2016 2016 40 3 50 1 Streptococcus_lactarius_homd_HMT_948 GCA_014490515.1 HMT-601 Z0118SE0132 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis Z0118SE0132 1 2521618 32.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/490/515/GCA_014490515.1_ASM1449051v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA660487 1282 SAMN15950888 ASM1449051v1 Complete Genome FALCON v. 2.1.4 2020-08-31T20:29:03.567 not applicable PacBio RSII; Illumina Jeonbuk National University 704.2x 97.18 99.67 0.02 99.99 0.1 GCF_014490515.1 2312 2473 2473 80 19 61 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_014495745.1 HMT-076 WS479 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri WS479 3 2564394 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/495/745/GCA_014495745.1_ASM1449574v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA660332 1292 SAMN15946583 ASM1449574v1 Complete Genome Canu v. v1.8 2020-08-31T07:13:05.433 China: Wenzhou Homo sapiens Oxford Nanopore MinION; Illumina HiSeq Wenzhou Medical University 100.0x 99.26 99.73 0 100 0.84 GCF_014495745.1 2474 2604 2604 48 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_014596365.2 HMT-610 KH1003-01 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens KH1003-01 4 2376255 48.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/596/365/GCA_014596365.2_ASM1459636v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJNA327996 1871106 SAMN05362769 ASM1459636v2 Contig SPAdes v. FEB-2020 2016-07-06T11:28:03.817 United Kingdom: Kingston upon Oxford Nanopore MinION Kingston University 30.0x 99.92 0 100 0.21 GCF_014596365.2 MAYX02 2212 2303 2303 19 12 59 1 Neisseria_flavescens_homd_HMT_610 GCA_014596375.1 HMT-956 RH3002v2f Named Cultivated Oral (Abundance: High) HMT-956 Neisseria cinerea RH3002v2f 26 1953373 50.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/596/375/GCA_014596375.1_ASM1459637v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria cinerea PRJNA327999 1871108 SAMN05362771 ASM1459637v1 Contig SPAdes v. 2015-10 2016-07-06T11:46:03.360 United Kingdom: Egham Illumina MiSeq Kingston University 30.0x 98.29 0.06 100 0 GCF_014596375.1 MAYZ01 1884 1960 1960 18 3 54 1 Neisseria_cinerea_homd_HMT_956 GCA_014596395.2 HMT-476 KH1003-02 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava KH1003-02 12 2338744 49.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/596/395/GCA_014596395.2_ASM1459639v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA327997 28449 SAMN05362770 ASM1459639v2 Contig SPAdes v. June-2021 2016-07-06T11:36:03.563 United Kingdom: Kingston upon Oxford Nanopore MinION Kingston University 30.0x 93.86 98.66 1.92 99.99 0.24 GCF_014596395.2 MAYY02 2275 2378 2378 28 12 62 1 Neisseria_subflava_homd_HMT_476 GCA_014596425.2 HMT-476 RH3002v2g Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava RH3002v2g 1 2223142 49.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/596/425/GCA_014596425.2_ASM1459642v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA328015 1871109 SAMN05362870 ASM1459642v2 Complete Genome SPAdes v. June 2021 2016-07-06T13:44:03.377 United Kingdom: Egham Oxford Nanopore MinION Kingston University 30.0x 100 0 100 0.01 GCF_014596425.2 2066 2157 2157 19 12 59 1 Neisseria_subflava_homd_HMT_476 GCA_014610855.1 HMT-072 1954 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 1954 14 2840792 59.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/610/855/GCA_014610855.1_ASM1461085v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA418005 43770 SAMN08013311 ASM1461085v1 Contig MIRA v. 2015-06; CLC NGS Cell v. 2015-06 2017-11-11T13:43:04.613 Brazil: Rio de Janeiro Surgical wound secretion Ion Personal Genome Machine Fundacao Oswaldo Cruz 109.0x 98.17 96.92 0.36 98.69 0.65 GCF_014610855.1 PGGF01 2894 2976 2976 9 10 62 1 Corynebacterium_striatum_homd_HMT_072 GCA_014610885.1 HMT-072 2038 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 2038 20 2841405 59.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/610/885/GCA_014610885.1_ASM1461088v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA418004 43770 SAMN08013312 ASM1461088v1 Contig MIRA v. 2015-10; CLC NGS Cell v. 2015-10 2017-11-11T13:43:05.117 Brazil: Rio de Janeiro blood Ion Personal Genome Machine Fundacao Oswaldo Cruz 170.0x 98.56 97.8 0.57 99.58 1.9 GCF_014610885.1 PGGG01 2749 2820 2820 8 9 53 1 Corynebacterium_striatum_homd_HMT_072 GCA_014621675.1 HMT-686 B04Sm5 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B04Sm5 1 2011542 36.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/621/675/GCA_014621675.1_ASM1462167v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA661123 1225197 SAMN16014813 ASM1462167v1 Complete Genome SPAdes v. 3.14.0; Flye v. 2.8-b1674; Unicycler v. 0.4.8; Tricycler v. 0.3.0 2020-09-02T23:03:06.743 USA: New York City carious lesion Illumina MiSeq; Oxford Nanopore GridION J. Craig Venter Institute 3000.0x 99.15 100 0.45 100 0.1 GCF_014621675.1 1869 1981 1981 30 15 66 1 Streptococcus_mutans_homd_HMT_686 GCA_014622665.1 HMT-857 A12 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-857 Rhodobacter capsulatus A12 1 3616128 66.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/622/665/GCA_014622665.1_ASM1462266v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter;s__Rhodobacter capsulatus PRJNA659097 1061 SAMN15897434 ASM1462266v1 Complete Genome SMRT Link v. 5.1.0 2020-08-24T22:10:04.336 China:changsha soil PacBio Sequel; Illumina NovaSeq Hunan Academy of Agricultural Science 350.0x 99.99 98.79 0.56 100 0.42 GCF_014622665.1 3383 3479 3479 26 12 57 1 Rhodobacter_capsulatus_homd_HMT_857 GCA_014635765.1 HMT-116 CCM 2734 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis CCM 2734 26 2428814 32.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/635/765/GCA_014635765.1_ASM1463576v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJDB10511 29388 SAMD00244878 ASM1463576v1 Contig gcType assembly pipeline 2020-09-03T01:01:08.696 not applicable Illumina HiSeq X Ten WFCC-MIRCEN World Data Centre for Microorganisms (WDCM) 160.0x 99.98 99.81 0.06 99.99 0.3 GCF_014635765.1 BMDL01 2369 2486 2486 55 2 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_014645875.1 HMT-127 CGMCC 4.7143 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis CGMCC 4.7143 39 2184290 31.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/645/875/GCA_014645875.1_ASM1464587v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJDB10509 1436122 SAMD00245180 ASM1464587v1 Contig gcType assembly pipeline 2020-09-05T01:00:58.223 not applicable Illumina HiSeq X Ten WFCC-MIRCEN World Data Centre for Microorganisms (WDCM) 100.0x 99.9 99.36 0.59 99.99 0.05 GCF_014645875.1 BMMO01 2105 2221 2221 52 4 59 1 Staphylococcus_hominis_homd_HMT_127 GCA_014647755.1 HMT-279 JCM 30531 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCM 30531 9 2166795 55.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/647/755/GCA_014647755.1_ASM1464775v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJDB10510 1583331 SAMD00245298 ASM1464775v1 Contig gcType assembly pipeline 2020-09-05T01:01:02.103 not applicable Illumina HiSeq X Ten WFCC-MIRCEN World Data Centre for Microorganisms (WDCM) 231.0x 98.87 0 99.81 0.03 GCF_014647755.1 BMPU01 1673 1735 1735 8 4 49 1 Porphyromonas_pasteri_homd_HMT_279 GCA_014653575.1 HMT-003 CGMCC 1.8957 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-003 Sphingomonas glacialis CGMCC 1.8957 58 4470563 65.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/653/575/GCA_014653575.1_ASM1465357v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas;s__Sphingomonas glacialis PRJDB10509 658225 SAMD00245162 ASM1465357v1 Scaffold gcType assembly pipeline 2020-09-05T01:00:57.806 not applicable Illumina HiSeq X Ten WFCC-MIRCEN World Data Centre for Microorganisms (WDCM) 97.0x 99.57 1.31 100 3.5 GCF_014653575.1 BNAQ01 4189 4268 4268 25 3 50 1 Sphingomonas_glacialis_homd_HMT_003 GCA_014654435.1 HMT-812 JCM 12093 Named Cultivated Gastrointestinal Tract (Abundance: Low) HMT-812 Helicobacter pylori JCM 12093 78 1560746 39.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/654/435/GCA_014654435.1_ASM1465443v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori PRJDB10510 210 SAMD00245226 ASM1465443v1 Scaffold BGI assembly pipeline 2020-09-05T01:00:59.790 not applicable Illumina HiSeq X Ten WFCC-MIRCEN World Data Centre for Microorganisms (WDCM) 1028.0x 99.74 93.07 0 93.54 0.46 GCF_014654435.1 BNAZ01 1544 1596 1596 12 3 36 1 Helicobacter_pylori_homd_HMT_812 GCA_014672755.1 HMT-554 ATCC 19606 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-554 Acinetobacter baumannii ATCC 19606 1 3980852 39.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/672/755/GCA_014672755.1_ASM1467275v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii PRJNA645521 470 SAMN15507635 ASM1467275v1 Complete Genome HGAP v. 3.0 2020-07-11T07:16:04.056 unknown unknown PacBio RSII EPFL 217.3x 99.99 99.63 0 100 0.11 GCF_014672755.1 3701 3834 3834 41 18 73 1 Acinetobacter_baumannii_homd_HMT_554 GCA_014701215.1 HMT-641 TAMBA230 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae TAMBA230 1 1809645 38.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/701/215/GCA_014701215.1_ASM1470121v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB9304 727 SAMD00204789 ASM1470121v1 Complete Genome Unicycler v. 0.4.8 2020-09-16T15:06:22.817 Japan:Hyogo, Tamba, Hikami illumina MiSeq; Nanopore GridION Department of Bacteriology II, National Institute of Infectious Diseases 951.0x 97.38 99.67 0 100 0.08 GCF_014701215.1 1688 1798 1798 31 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_014762905.1 HMT-646 chl4475 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae chl4475 100 1964801 46.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/762/905/GCA_014762905.1_ASM1476290v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA644230 504 SAMN15454876 ASM1476290v1 Contig shovill-spades v. 1.0.1 2020-07-05T23:20:05.270 New Zealand:Christchurch Distal femur tissue Illumina MiSeq Canterbury Health Laboratories 25.0x 98.5 98.98 0.23 100 0.07 GCF_014762905.1 JACBKU01 1938 2004 2004 14 3 48 1 Kingella_kingae_homd_HMT_646 GCA_014762915.1 HMT-646 chl2764 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae chl2764 95 1965870 46.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/762/915/GCA_014762915.1_ASM1476291v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA644230 504 SAMN15454877 ASM1476291v1 Contig shovill-spades v. 1.0.1 2020-07-05T23:20:05.286 New Zealand:Christchurch Wrist Illumina MiSeq Canterbury Health Laboratories 26.0x 98.5 98.98 0.23 100 0.08 GCF_014762915.1 JACBKV01 1942 2008 2008 14 3 48 1 Kingella_kingae_homd_HMT_646 GCA_014762925.1 HMT-646 chl3548 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae chl3548 89 1965646 46.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/762/925/GCA_014762925.1_ASM1476292v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA644230 504 SAMN15454875 ASM1476292v1 Contig shovill-spades v. 1.0.1 2020-07-05T23:20:05.246 New Zealand:Christchurch Sternum bone Illumina MiSeq Canterbury Health Laboratories 28.0x 98.5 98.98 0.23 100 0.07 GCF_014762925.1 JACBKT01 1943 2010 2010 15 3 48 1 Kingella_kingae_homd_HMT_646 GCA_014841035.1 HMT-819 GHZ10a Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-819 Lactobacillus johnsonii GHZ10a 3 2015225 35.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/841/035/GCA_014841035.1_ASM1484103v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus sp945980025 PRJNA665553 33959 SAMN16131614 ASM1484103v1 Complete Genome FALCON v. 0.3 2020-09-14T22:37:05.843 China:qinghai feces PacBio Sequel Lanzhou Veterinary Research Institute 100.0x 96.67 99.22 0.39 99.94 0.04 GCF_014841035.1 1921 2073 2073 47 24 80 1 Lactobacillus_johnsonii_homd_HMT_819 GCA_014842815.3 HMT-686 27-3 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 27-3 1 1978522 37.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/842/815/GCA_014842815.3_ASM1484281v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA665774 1309 SAMN16268312 ASM1484281v3 Complete Genome SPAdes v. 3.14.1 2020-09-25T23:29:04.750 USA: Oklahoma City, OK oral cavity PacBio; Illumina HiSeq LSU health Sciences Center 824.0x 99.04 100 0.45 100 0.15 GCF_014842815.3 1825 1934 1934 28 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_014843395.1 HMT-717 38R Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-717 Variovorax paradoxus 38R 1 6870625 67.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/843/395/GCA_014843395.1_ASM1484339v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax;s__Variovorax paradoxus_H PRJNA664737 2774875 SAMN16231215 ASM1484339v1 Complete Genome Canu v. 1.7; Pilon v. 1.22; Circlator v. 1.5.1; BWA-MEM v. 7.12; Samtools v. 1.3.1 2020-09-21T10:22:09.280 France soil Oxford Nanopore GridION; Illumina HiSeq INRA 571.0x 100 0.59 100 0.65 GCF_014843395.1 6274 6368 6368 25 6 62 1 Variovorax_paradoxus_homd_HMT_717 GCA_014872435.1 HMT-118 COPD411 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus COPD411 22 1773818 45.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/872/435/GCA_014872435.1_ASM1487243v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA562766 218538 SAMN12905358 ASM1487243v1 Contig SPAdes v. v3.12.0 2019-10-03T00:36:17.960 Australia: Newcastle feces Illumina NextSeq University of Queensland 26.2x 97.94 97.47 0.63 99.99 0.14 GCF_014872435.1 WHHU01 1668 1771 1771 53 0 49 1 Dialister_invisus_homd_HMT_118 GCA_014874165.1 HMT-087 DSM 24531 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-087 Micrococcus luteus DSM 24531 2 2469491 73.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/874/165/GCA_014874165.1_ASM1487416v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus;s__Micrococcus luteus PRJNA652996 566027 SAMN15741210 ASM1487416v1 Contig Flye v. 2.6 2020-08-05T17:58:13.173 missing missing PacBio DOE Joint Genome Institute 401.0x 97.96 98.5 0.23 99.99 0 GCF_014874165.1 JADBEH01 2221 2296 2296 16 6 52 1 Micrococcus_luteus_homd_HMT_087 GCA_014883915.1 HMT-339 TT2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-339 Janibacter indicus TT2 1 3663756 71.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/883/915/GCA_014883915.1_ASM1488391v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter;s__Janibacter indicus PRJNA665797 857417 SAMN16268743 ASM1488391v1 Complete Genome HGAP v. 3 2020-09-26T06:01:04.910 South Korea: Changwon skin swab PacBio RSII Changwon National University 169.0x 97.35 99.82 0.54 100 1.31 GCF_014883915.1 3559 3643 3643 23 6 54 1 Janibacter_indicus_homd_HMT_339 GCA_014890145.1 HMT-182 WS5495 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-182 Anoxybacillus flavithermus WS5495 146 2631121 41.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/890/145/GCA_014890145.1_ASM1489014v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus;s__Anoxybacillus flavithermus_G PRJNA632736 33934 SAMN14918601 ASM1489014v1 Contig SPAdes v. 2.5.1 2020-05-14T08:50:08.757 Germany milk powder Illumina MiSeq Technical University Munich 128.0x 99.44 0 99.95 0.09 GCF_014890145.1 JABJVJ01 2763 2939 2939 92 10 73 1 Anoxybacillus_flavithermus_homd_HMT_182 GCA_014890515.1 HMT-182 WS5281 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-182 Anoxybacillus flavithermus WS5281 149 2792323 41.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/890/515/GCA_014890515.1_ASM1489051v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus;s__Anoxybacillus flavithermus_G PRJNA632736 33934 SAMN14918584 ASM1489051v1 Contig SPAdes v. 2.5.1 2020-05-14T08:50:08.470 Germany milk powder Illumina MiSeq Technical University Munich 101.0x 99.44 0.56 99.99 0.28 GCF_014890515.1 JABJUS01 2911 3090 3090 93 10 75 1 Anoxybacillus_flavithermus_homd_HMT_182 GCA_014892235.1 HMT-844 T3315/96 Named Cultivated Vaginal (Abundance: Medium) HMT-844 Sneathia vaginalis T3315/96 59 1275728 28.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/892/235/GCA_014892235.1_ASM1489223v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia;s__Sneathia vaginalis PRJNA666307 2777994 SAMN16287898 ASM1489223v1 Scaffold SPAdes v. 3.10.1 2020-09-29T06:49:05.606 France: Strasbourg blood Illumina NextSeq Justus Liebig University Giessen 3.0x 98.88 0 99.79 0.42 GCF_014892235.1 JADBHL01 1203 1255 1255 13 2 36 1 Sneathia_vaginalis_homd_HMT_844 GCA_014894835.1 HMT-681 CECT30004 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 CECT30004 2 2327745 59.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/894/835/GCA_014894835.1_ASM1489483v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA658327 43675 SAMN15866158 ASM1489483v1 Contig Canu v. 1.8 2020-08-20T12:17:03.993 Spain: Valencia Illumina MiSeq; Oxford Nanopore MinION FISABIO 382.0x 94.39 95.78 0 89.76 3.57 GCF_014894835.1 JACVMI01 2280 2359 2359 13 10 55 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_014894835.1 HMT-681 CECT30004 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 CECT30004 2 2327745 59.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/894/835/GCA_014894835.1_ASM1489483v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA658327 43675 SAMN15866158 ASM1489483v1 Contig Canu v. 1.8 2020-08-20T12:17:03.993 Spain: Valencia Illumina MiSeq; Oxford Nanopore MinION FISABIO 382.0x 94.39 95.78 0 89.76 3.57 GCF_014894835.1 JACVMI01 2280 2359 2359 13 10 55 1 Rothia_mucilaginosa_HMT_147_681 GCA_014894895.1 HMT-681 CECT30002 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 CECT30002 4 2351715 59.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/894/895/GCA_014894895.1_ASM1489489v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA658327 43675 SAMN15866156 ASM1489489v1 Contig Canu v. 1.8 2020-08-20T12:17:03.960 Spain: Valencia Illumina MiSeq; Oxford Nanopore MinION FISABIO 390.0x 94.38 95.78 0 89.63 2.87 GCF_014894895.1 JACVMJ01 2390 2465 2465 13 10 51 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_014894895.1 HMT-681 CECT30002 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 CECT30002 4 2351715 59.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/894/895/GCA_014894895.1_ASM1489489v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA658327 43675 SAMN15866156 ASM1489489v1 Contig Canu v. 1.8 2020-08-20T12:17:03.960 Spain: Valencia Illumina MiSeq; Oxford Nanopore MinION FISABIO 390.0x 94.38 95.78 0 89.63 2.87 GCF_014894895.1 JACVMJ01 2390 2465 2465 13 10 51 1 Rothia_mucilaginosa_HMT_147_681 GCA_014898195.1 HMT-890 KCTC 3272 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-890 Bifidobacterium subtile KCTC 3272 1 2822354 60.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/898/195/GCA_014898195.1_ASM1489819v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium subtile PRJNA661153 77635 SAMN16365388 ASM1489819v1 Complete Genome PacBio SMRT Analysis v. v2.3 2020-10-05T03:03:05.063 Missing sewage PacBio RSII Korea University 228.5x 99.99 99.44 3.48 98.83 1.28 GCF_014898195.1 2302 2373 2373 17 4 49 1 Bifidobacterium_subtile_homd_HMT_890 GCA_014899365.1 HMT-822 SEA14318P6C4 Named Cultivated Pathogen (Abundance: Scarce) HMT-822 Mycobacterium tuberculosis SEA14318P6C4 1 4426614 65.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/899/365/GCA_014899365.1_ASM1489936v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium tuberculosis PRJNA555636 1773 SAMN12325272 ASM1489936v1 Complete Genome HGAP v. 2 2019-07-19T20:31:05.553 Sweden missing PacBio RSII San Diego State University 128.0x 99.9 99.61 0 100 0.37 GCF_014899365.1 4051 4106 0 0 3 51 1 Mycobacterium_tuberculosis_homd_HMT_822 GCA_014905055.1 HMT-558 NSMJ23 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-558 Levilactobacillus brevis NSMJ23 8 2616331 45.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/905/055/GCA_014905055.1_ASM1490505v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis PRJNA614607 1580 SAMN14433864 ASM1490505v1 Complete Genome Canu v. v1.7 2020-03-24T03:37:04.247 South Korea: Sangju Makgeolli (Korean traditional alcoholic beverage) PacBio RSII; Illumina HiSeq Nakdonggang National Institute of Biological Resources 332.0x 97.65 99.06 0 100 0.15 GCF_014905055.1 2586 2695 2695 30 15 63 1 Levilactobacillus_brevis_homd_HMT_558 GCA_014931275.1 HMT-718 M1C160_1 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C160_1 1 2018144 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/275/GCA_014931275.1_ASM1493127v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp014931275 PRJNA668428 729 SAMN16409282 ASM1493127v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:10.153 Australia: Melbourne cough swab Illumina MiniSeq; Oxford Nanopore MiniION Monash University 120.0x 93.44 99.89 0.3 100 1.27 GCF_014931275.1 1861 1962 1962 25 19 56 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931295.1 HMT-718 M1C152_1 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C152_1 1 2022727 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/295/GCA_014931295.1_ASM1493129v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp014931275 PRJNA668428 729 SAMN16409277 ASM1493129v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:09.926 Australia: Melbourne cough swab Illumina MiniSeq; Oxford Nanopore MiniION Monash University 278.0x 93.53 99.89 0.23 100 0 GCF_014931295.1 1862 1983 1983 44 19 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931315.1 HMT-718 M1C149_1 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C149_1 1 2015253 39.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/315/GCA_014931315.1_ASM1493131v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp900764435 PRJNA668428 729 SAMN16409271 ASM1493131v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:09.453 Australia: Melbourne cough swab Illumina MiniSeq; Oxford Nanopore MiniION Monash University 344.0x 94.54 99.66 0 100 0 GCF_014931315.1 1850 1951 1951 23 20 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931335.1 HMT-718 M1C147_1 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C147_1 3 1981608 39.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/335/GCA_014931335.1_ASM1493133v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AF PRJNA668428 729 SAMN16409268 ASM1493133v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:09.296 Australia: Melbourne bronchoalveolar lavage Illumina MiniSeq; Oxford Nanopore MiniION Monash University 286.0x 94.49 99.89 0 100 0 GCF_014931335.1 1848 1950 1950 25 19 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931355.1 HMT-718 M1C146_1 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C146_1 1 1926530 39.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/355/GCA_014931355.1_ASM1493135v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp001811025 PRJNA668428 729 SAMN16409265 ASM1493135v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:09.220 Australia: Melbourne cough swab Illumina MiniSeq; Oxford Nanopore MiniION Monash University 546.0x 94.01 99.89 0.08 100 0.12 GCF_014931355.1 1798 1875 0 0 19 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931375.1 HMT-718 M1C142_1 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C142_1 3 2037540 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/375/GCA_014931375.1_ASM1493137v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp927911595 PRJNA668428 729 SAMN16409259 ASM1493137v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:09.066 Australia: Melbourne cough swab Illumina MiniSeq; Oxford Nanopore MiniION Monash University 120.0x 94.34 99.89 0 100 0 GCF_014931375.1 1894 1995 1995 25 19 56 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931395.1 HMT-718 M1C137_2 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C137_2 1 2177054 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/395/GCA_014931395.1_ASM1493139v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp900764435 PRJNA668428 729 SAMN16409249 ASM1493139v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:08.776 Australia: Melbourne bronchoalveolar lavage Illumina MiniSeq; Oxford Nanopore MiniION Monash University 278.0x 94.56 99.89 0.11 100 0.07 GCF_014931395.1 2072 2177 2177 27 20 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931415.1 HMT-718 M1C130_2 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C130_2 1 1994590 39.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/415/GCA_014931415.1_ASM1493141v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AF PRJNA668428 729 SAMN16409239 ASM1493141v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:08.616 Australia: Melbourne cough swab Illumina MiniSeq; Oxford Nanopore MiniION Monash University 481.0x 94.48 99.89 0.08 100 0.14 GCF_014931415.1 1856 1957 1957 24 19 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931435.1 HMT-718 M1C125_4 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C125_4 1 1953198 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/435/GCA_014931435.1_ASM1493143v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AF PRJNA668428 729 SAMN16409233 ASM1493143v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:08.513 Australia: Melbourne sputum Illumina MiniSeq; Oxford Nanopore MiniION Monash University 494.0x 94.59 99.89 0.08 100 0.1 GCF_014931435.1 1804 1904 1904 23 19 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931455.1 HMT-718 M1C120_2 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C120_2 1 2000745 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/455/GCA_014931455.1_ASM1493145v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AF PRJNA668428 729 SAMN16409231 ASM1493145v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:08.483 Australia: Melbourne cough swab Illumina MiniSeq; Oxford Nanopore MiniION Monash University 329.0x 94.5 99.89 0.08 100 0.14 GCF_014931455.1 1876 1975 1975 23 19 56 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931475.1 HMT-718 M1C113_1 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C113_1 3 2089461 39.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/475/GCA_014931475.1_ASM1493147v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp001811025 PRJNA668428 729 SAMN16409224 ASM1493147v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:08.366 Australia: Melbourne cough swab Illumina MiniSeq; Oxford Nanopore MiniION Monash University 252.0x 94.1 99.66 1.5 100 1.16 GCF_014931475.1 1980 2085 2085 28 19 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014931495.1 HMT-641 M1C112_1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae M1C112_1 1 1894676 38.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/495/GCA_014931495.1_ASM1493149v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA668428 727 SAMN16409221 ASM1493149v1 Complete Genome Unicycler v. 0.4.7 2020-10-09T22:21:08.313 Australia: Melbourne cough swab Illumina MiniSeq; Oxford Nanopore MiniION Monash University 177.0x 97.32 99.67 0.07 100 0 GCF_014931495.1 1794 1907 1907 35 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_014962425.1 HMT-128 IVK28 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis IVK28 1 2567907 33.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/962/425/GCA_014962425.1_ASM1496242v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA669000 28035 SAMN16428309 ASM1496242v1 Complete Genome SPAdes v. OCT-2018 2020-10-13T11:37:04.079 Germany nasal swab Illumina MiSeq; PacBio RSII University of Tuebingen 15.0x 99.44 99.61 0 100 0.05 GCF_014962425.1 2367 2535 2535 87 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_014982375.1 HMT-718 M1C116_1 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C116_1 61 1973866 39.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/982/375/GCA_014982375.1_ASM1498237v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AE PRJNA668428 729 SAMN16409227 ASM1498237v1 Contig Unicycler v. 0.4.7 2020-10-09T22:21:08.416 Australia: Melbourne cough swab Illumina MiniSeq Monash University 47.0x 95.61 95.34 0 99.49 0 GCF_014982375.1 JADCLV01 1869 1951 1951 31 4 46 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_014982385.1 HMT-718 M1C111_2 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae M1C111_2 26 1968590 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/982/385/GCA_014982385.1_ASM1498238v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AF PRJNA668428 729 SAMN16409219 ASM1498238v1 Contig Unicycler v. 0.4.7 2020-10-09T22:21:08.273 Australia: Melbourne cough swab Illumina MiniSeq Monash University 47.0x 94.42 99.89 0 100 0.02 GCF_014982385.1 JADCLU01 1892 1972 1972 24 4 51 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_015070475.1 HMT-116 HESS022 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis HESS022 42 2495216 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/070/475/GCA_015070475.1_ASM1507047v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA668279 29388 SAMN16402357 ASM1507047v1 Contig Prokka v. 1.14.6 2020-10-09T07:59:08.093 Ghana nasal mucosa Illumina MiSeq University of Luebeck 100.0x 98.91 99.81 3.16 99.99 4.25 GCF_015070475.1 JADCSQ01 2369 2461 2461 51 3 37 1 Staphylococcus_capitis_homd_HMT_116 GCA_015070505.1 HMT-445 HESMS017b Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 HESMS017b 21 2629169 61.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/070/505/GCA_015070505.1_ASM1507050v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA668279 169292 SAMN16402356 ASM1507050v1 Contig Prokka v. 1.14.6 2020-10-09T07:59:08.066 Ghana nasal mucosa Illumina MiSeq University of Luebeck 100.0x 88.5 99.78 0.22 99.99 0.2 GCF_015070505.1 JADCSP01 2444 2510 0 9 5 51 1 Corynebacterium_hesseae_homd_HMT_445 GCA_015070685.1 HMT-120 HESMS017 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus HESMS017 20 2462495 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/070/685/GCA_015070685.1_ASM1507068v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA668279 1283 SAMN16402344 ASM1507068v1 Contig Prokka v. 1.14.6 2020-10-09T07:59:07.766 Ghana nasal mucosa Illumina MiSeq University of Luebeck 100.0x 97.5 99.62 0.86 100 1.8 GCF_015070685.1 JADCSD01 2382 2519 2519 74 5 57 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_015070775.1 HMT-445 HESN016 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 HESN016 17 2613953 61.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/070/775/GCA_015070775.1_ASM1507077v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA668279 169292 SAMN16402342 ASM1507077v1 Contig Prokka v. 1.14.6 2020-10-09T07:59:07.703 Ghana nasal mucosa Illumina MiSeq University of Luebeck 100.0x 88.48 98.02 0 99.43 0.03 GCF_015070775.1 JADCSB01 2407 2470 0 8 5 49 1 Corynebacterium_hesseae_homd_HMT_445 GCA_015099135.1 HMT-865 TP1631 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-865 Kluyvera ascorbata TP1631 6 5371308 53.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/099/135/GCA_015099135.1_ASM1509913v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera;s__Kluyvera ascorbata PRJDB9277 51288 SAMD00204448 ASM1509913v1 Complete Genome Unicycler v. 0.4.7 2020-10-07T01:01:05.576 not applicable Illumina Novaseq6000; GridION Tokyo University of Pharmacy and Life Sciences 295.0x 99.94 99.69 1.97 100 0.06 GCF_015099135.1 5065 5329 5329 151 25 87 1 Kluyvera_ascorbata_homd_HMT_865 GCA_015135575.1 HMT-865 STW0522-44 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-865 Kluyvera ascorbata STW0522-44 12 5625027 53.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/135/575/GCA_015135575.1_ASM1513557v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera;s__Kluyvera ascorbata PRJDB9036 2681387 SAMD00195884 ASM1513557v1 Complete Genome flye v. 2.5; minimap v. 0.2-r124; racon v. 1.1.0; circlator v. 1.5.3; Pilon v. 1.18; SPAdes v. 3.11. 2020-10-09T01:01:02.943 Japan:Tokyo Sequel; NextSeq 500 Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases 360.0x 99.69 2.34 100 0.15 GCF_015135575.1 5386 5637 5637 138 25 87 1 Kluyvera_ascorbata_homd_HMT_865 GCA_015163675.1 HMT-433 D2833 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 D2833 3 1985565 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/163/675/GCA_015163675.1_ASM1516367v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA239251 199 SAMN03567903 ASM1516367v1 Contig HGAP v. 3 2015-04-24T16:50:16.000 USA missing PacBio Centers for Disease Control and Prevention 137.4x 88.68 99.51 0.86 99.97 0.86 GCF_015163675.1 JADDYP01 1950 2007 2007 4 5 47 1 Campylobacter_concisus_HMT_433_575 GCA_015163675.1 HMT-433 D2833 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 D2833 3 1985565 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/163/675/GCA_015163675.1_ASM1516367v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJNA239251 199 SAMN03567903 ASM1516367v1 Contig HGAP v. 3 2015-04-24T16:50:16.000 USA missing PacBio Centers for Disease Control and Prevention 137.4x 88.68 99.51 0.86 99.97 0.86 GCF_015163675.1 JADDYP01 1950 2007 2007 4 5 47 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_015229935.1 HMT-433 H36O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H36O-S1 35 2032298 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/229/935/GCA_015229935.1_ASM1522993v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN14122382 ASM1522993v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.787 Australia saliva Illumina MiSeq University of New South Wales 81.0x 88.76 99.51 0 99.97 0.04 GCF_015229935.1 JAAKYY01 1981 2025 2025 4 2 37 1 Campylobacter_concisus_HMT_433_575 GCA_015229935.1 HMT-433 H36O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H36O-S1 35 2032298 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/229/935/GCA_015229935.1_ASM1522993v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA388128 199 SAMN14122382 ASM1522993v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.787 Australia saliva Illumina MiSeq University of New South Wales 81.0x 88.76 99.51 0 99.97 0.04 GCF_015229935.1 JAAKYY01 1981 2025 2025 4 2 37 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_015229965.1 HMT-433 H33O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H33O-S1 54 2081174 39.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/229/965/GCA_015229965.1_ASM1522996v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA388128 199 SAMN14122379 ASM1522996v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.733 Australia saliva Illumina MiSeq University of New South Wales 216.0x 88.76 99.51 0.31 99.95 0.17 GCF_015229965.1 JAAKZB01 2029 2077 2077 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_015229965.1 HMT-433 H33O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H33O-S1 54 2081174 39.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/229/965/GCA_015229965.1_ASM1522996v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA388128 199 SAMN14122379 ASM1522996v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.733 Australia saliva Illumina MiSeq University of New South Wales 216.0x 88.76 99.51 0.31 99.95 0.17 GCF_015229965.1 JAAKZB01 2029 2077 2077 4 2 41 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_015229985.1 HMT-575 H34O-S1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H34O-S1 14 1803340 37.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/229/985/GCA_015229985.1_ASM1522998v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_M PRJNA388128 199 SAMN14122380 ASM1522998v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.753 Australia saliva Illumina MiSeq University of New South Wales 219.0x 93.92 99.88 0.56 99.97 0.03 GCF_015229985.1 JAAKZA01 1794 1842 0 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_015229985.1 HMT-575 H34O-S1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H34O-S1 14 1803340 37.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/229/985/GCA_015229985.1_ASM1522998v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_M PRJNA388128 199 SAMN14122380 ASM1522998v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.753 Australia saliva Illumina MiSeq University of New South Wales 219.0x 93.92 99.88 0.56 99.97 0.03 GCF_015229985.1 JAAKZA01 1794 1842 0 4 2 41 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_015230015.1 HMT-433 H32O-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H32O-S2 39 2013281 39.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/230/015/GCA_015230015.1_ASM1523001v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AF PRJNA388128 199 SAMN14122378 ASM1523001v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.717 Australia saliva Illumina MiSeq University of New South Wales 186.0x 88.71 99.32 0.19 99.96 0.01 GCF_015230015.1 JAAKZC01 2019 2069 0 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_015230015.1 HMT-433 H32O-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H32O-S2 39 2013281 39.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/230/015/GCA_015230015.1_ASM1523001v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AF PRJNA388128 199 SAMN14122378 ASM1523001v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.717 Australia saliva Illumina MiSeq University of New South Wales 186.0x 88.71 99.32 0.19 99.96 0.01 GCF_015230015.1 JAAKZC01 2019 2069 0 4 2 43 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_015230035.1 HMT-433 H32O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H32O-S1 29 1978079 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/230/035/GCA_015230035.1_ASM1523003v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA388128 199 SAMN14122377 ASM1523003v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.700 Australia saliva Illumina MiSeq University of New South Wales 163.0x 88.56 99.51 0.12 99.79 0.01 GCF_015230035.1 JAAKZD01 1955 2001 2001 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_015230035.1 HMT-433 H32O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H32O-S1 29 1978079 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/230/035/GCA_015230035.1_ASM1523003v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJNA388128 199 SAMN14122377 ASM1523003v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.700 Australia saliva Illumina MiSeq University of New South Wales 163.0x 88.56 99.51 0.12 99.79 0.01 GCF_015230035.1 JAAKZD01 1955 2001 2001 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_015230075.1 HMT-433 H31O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H31O-S1 27 1906383 39.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/230/075/GCA_015230075.1_ASM1523007v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJNA388128 199 SAMN14122376 ASM1523007v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.677 Australia saliva Illumina MiSeq University of New South Wales 164.0x 88.73 99.51 0 99.96 0.01 GCF_015230075.1 JAAKZE01 1900 1950 1950 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_015230075.1 HMT-433 H31O-S1 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H31O-S1 27 1906383 39.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/230/075/GCA_015230075.1_ASM1523007v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJNA388128 199 SAMN14122376 ASM1523007v1 Contig SPAdes v. 1.0.9 2020-02-17T21:40:04.677 Australia saliva Illumina MiSeq University of New South Wales 164.0x 88.73 99.51 0 99.96 0.01 GCF_015230075.1 JAAKZE01 1900 1950 1950 4 2 43 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_015234665.1 HMT-116 GW2.1 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis GW2.1 35 2450181 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/234/665/GCA_015234665.1_ASM1523466v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA671681 29388 SAMN16540224 ASM1523466v1 Contig SPAdes v. 3.1.53 2020-10-25T11:51:05.280 United Kingdom Oral Illumina HiSeq Kings College London 30.0x 98.96 99.81 0.36 99.99 0.18 GCF_015234665.1 JADGMA01 2288 2411 2411 49 10 63 1 Staphylococcus_capitis_homd_HMT_116 GCA_015240415.1 HMT-681 CECT30005 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 CECT30005 1 2316433 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/240/415/GCA_015240415.1_ASM1524041v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA658327 43675 SAMN15866159 ASM1524041v1 Chromosome Canu v. 1.8 2020-08-20T12:17:04.013 Spain: Valencia Illumina MiSeq + Oxford Nanopore MiniIon FISABIO 55.0x 95.03 99.33 1.33 99.99 0.39 GCF_015240415.1 1776 1850 1850 13 10 50 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_015240415.1 HMT-681 CECT30005 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 CECT30005 1 2316433 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/240/415/GCA_015240415.1_ASM1524041v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA658327 43675 SAMN15866159 ASM1524041v1 Chromosome Canu v. 1.8 2020-08-20T12:17:04.013 Spain: Valencia Illumina MiSeq + Oxford Nanopore MiniIon FISABIO 55.0x 95.03 99.33 1.33 99.99 0.39 GCF_015240415.1 1776 1850 1850 13 10 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_015243435.1 HMT-116 BN2 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis BN2 3 2528549 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/243/435/GCA_015243435.1_ASM1524343v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA557823 29388 SAMN12419159 ASM1524343v1 Complete Genome HGAP v. 3 2019-08-01T05:46:04.610 Germany: Wachtberg cat PacBio University Clinic Bonn 350.0x 98.98 99.81 0.48 99.99 0.75 GCF_015243435.1 2365 2501 2501 53 19 63 1 Staphylococcus_capitis_homd_HMT_116 GCA_015254855.1 HMT-022 JCVI_39_bin.14 Named Cultivated Oral (Abundance: High) HMT-022 Lautropia mirabilis JCVI_39_bin.14 215 3096132 yes 65.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/254/855/GCA_015254855.1_ASM1525485v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia mirabilis PRJNA624185 47671 SAMN14570803 ASM1525485v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:09.816 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 1.9x 96.07 98.05 0 97.97 0.27 JABZPE01 2557 2613 2613 11 1 44 0 Lautropia_mirabilis_homd_HMT_022 GCA_015254865.1 HMT-022 JCVI_47_bin.7 Named Cultivated Oral (Abundance: High) HMT-022 Lautropia mirabilis JCVI_47_bin.7 170 3045803 yes 65.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/254/865/GCA_015254865.1_ASM1525486v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia mirabilis PRJNA624185 47671 SAMN14570806 ASM1525486v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:10.030 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 1.0x 96.53 97.74 0.12 99.39 0.08 GCF_015254865.1 JABZPH01 2463 2517 2517 12 0 42 0 Lautropia_mirabilis_homd_HMT_022 GCA_015255005.1 HMT-718 JCVI_38_bin.18 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae JCVI_38_bin.18 47 1913025 yes 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/005/GCA_015255005.1_ASM1525500v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_K PRJNA624185 740 SAMN14570796 ASM1525500v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:09.703 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 9.0x 99.66 0 100 0 GCF_015255005.1 JABZOX01 1819 1884 1884 22 1 41 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_015255285.1 HMT-046 JCVI_4_bin.2 Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum JCVI_4_bin.2 123 1531077 yes 30.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/285/GCA_015255285.1_ASM1525528v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJNA624185 29391 SAMN14570780 ASM1525528v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:09.450 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.6x 96.68 97.99 0.57 99.8 0.09 GCF_015255285.1 JABZOH01 1437 1480 1480 21 0 21 1 Gemella_morbillorum_homd_HMT_046 GCA_015255305.1 HMT-046 JCVI_26_bin.4 Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum JCVI_26_bin.4 179 1580065 yes 30.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/305/GCA_015255305.1_ASM1525530v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJNA624185 29391 SAMN14570779 ASM1525530v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:09.433 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.5x 97.9 90.02 0.77 93.52 0.32 GCF_015255305.1 JABZOG01 1487 1518 1518 24 0 7 0 Gemella_morbillorum_homd_HMT_046 GCA_015255405.1 HMT-429 JCVI_44_bin.19 Named NVP Cultivated Oral (Abundance: High) HMT-429 Fusobacterium pseudoperiodonticum JCVI_44_bin.19 188 2132266 yes 28.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/405/GCA_015255405.1_ASM1525540v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJNA624185 860 SAMN14570775 ASM1525540v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:09.373 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.0x 93.22 94.61 0.22 94.58 1.04 JABZOC01 1997 2046 2046 25 0 23 1 Fusobacterium_pseudoperiodonticum_homd_HMT_429 GCA_015255615.1 HMT-467 JCVI_49_bin.14 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_49_bin.14" 115 2363855 yes 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/615/GCA_015255615.1_ASM1525561v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570763 ASM1525561v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:09.180 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 20.5x 100 0.71 99.93 0.36 JABZNQ01 2264 2319 2319 28 0 26 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255645.1 HMT-467 JCVI_48_bin.21 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_48_bin.21" 165 1423409 yes 40.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/645/GCA_015255645.1_ASM1525564v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570762 ASM1525564v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:09.166 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 7.7x 93.38 1.06 85.43 0.14 JABZNP01 1258 1299 1299 22 1 17 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255705.1 HMT-467 JCVI_42_bin.9 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_42_bin.9" 127 1588988 yes 40.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/705/GCA_015255705.1_ASM1525570v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570760 ASM1525570v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:09.133 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.8x 96.93 1.11 85.68 1.31 JABZNN01 1423 1485 1485 20 3 38 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255725.1 HMT-467 JCVI_38_bin.11 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_38_bin.11" 48 1712718 yes 40.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/725/GCA_015255725.1_ASM1525572v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570758 ASM1525572v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:09.103 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.7x 100 0.71 98.81 0.68 JABZNL01 1583 1644 1644 25 0 35 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255735.1 HMT-467 JCVI_41_bin.14 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_41_bin.14" 54 1725057 yes 40.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/735/GCA_015255735.1_ASM1525573v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570759 ASM1525573v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:09.120 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 8.5x 100 0.71 99.63 0.22 JABZNM01 1573 1630 1630 24 0 32 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255745.1 HMT-467 JCVI_37_bin.11 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_37_bin.11" 186 1671780 yes 40.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/745/GCA_015255745.1_ASM1525574v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570757 ASM1525574v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:09.086 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.9x 95.27 4.14 92.84 2.44 JABZNK01 1532 1593 1593 25 1 34 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255785.1 HMT-467 JCVI_34_bin.13 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_34_bin.13" 34 1785280 yes 39.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/785/GCA_015255785.1_ASM1525578v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570756 ASM1525578v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:09.070 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 7.3x 100 0.71 99.57 0.08 JABZNJ01 1623 1692 1692 24 1 43 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255805.1 HMT-467 JCVI_33_bin.6 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_33_bin.6" 62 1698949 yes 40.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/805/GCA_015255805.1_ASM1525580v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570755 ASM1525580v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:09.056 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.2x 95.04 0.71 88.7 0.41 JABZNI01 1571 1625 1625 26 2 25 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255825.1 HMT-467 JCVI_32_bin.54 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_32_bin.54" 42 1639903 yes 40.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/825/GCA_015255825.1_ASM1525582v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570754 ASM1525582v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:09.040 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 24.0x 99.29 0.71 98.91 0.07 JABZNH01 1473 1537 1537 27 0 36 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255865.1 HMT-467 JCVI_28_bin.13 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_28_bin.13" 65 1672967 yes 40.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/865/GCA_015255865.1_ASM1525586v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570751 ASM1525586v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:08.993 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.5x 98.44 0.71 94.59 0.25 JABZNE01 1537 1597 1597 26 0 33 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255915.1 HMT-467 JCVI_25_bin.2 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_25_bin.2" 32 1737384 yes 40.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/915/GCA_015255915.1_ASM1525591v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570748 ASM1525591v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:08.946 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.9x 100 0.71 99.85 0.12 JABZNB01 1604 1667 1667 25 0 37 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015255975.1 HMT-467 JCVI_24_bin.9 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_24_bin.9" 26 1835897 yes 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/975/GCA_015255975.1_ASM1525597v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570747 ASM1525597v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:08.930 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.8x 100 0.71 99.9 0.27 JABZNA01 1711 1773 1773 27 2 32 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015256015.1 HMT-467 JCVI_1_bin.13 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_1_bin.13" 72 1623809 yes 40.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/256/015/GCA_015256015.1_ASM1525601v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570745 ASM1525601v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:08.900 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 18.9x 92.24 0.89 87.29 0.95 JABZMY01 1478 1549 1549 25 5 40 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015256025.1 HMT-467 JCVI_18_bin.6 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_18_bin.6" 126 1743182 yes 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/256/025/GCA_015256025.1_ASM1525602v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570743 ASM1525602v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:08.866 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.4x 99.65 0.71 90.26 2.6 JABZMW01 1570 1634 1634 25 0 38 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015256085.1 HMT-467 JCVI_16_bin.7 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_16_bin.7" 173 1560527 yes 40.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/256/085/GCA_015256085.1_ASM1525608v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570741 ASM1525608v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:08.833 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 15.7x 98.94 1.42 94.73 0.2 JABZMU01 1383 1425 1425 26 0 15 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015256115.1 HMT-467 JCVI_12_bin.8 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_12_bin.8" 22 1675367 yes 39.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/256/115/GCA_015256115.1_ASM1525611v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570738 ASM1525611v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:08.786 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 8.1x 94.96 0.71 88.39 0.12 JABZMR01 1552 1603 1603 24 0 26 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015256125.1 HMT-467 JCVI_13_bin.4 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_13_bin.4" 42 1577907 yes 40.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/256/125/GCA_015256125.1_ASM1525612v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570739 ASM1525612v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:08.803 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 6.3x 99.29 0.71 86.96 0.09 JABZMS01 1427 1495 1495 23 1 43 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015256135.1 HMT-467 JCVI_14_bin.12 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_14_bin.12" 197 1555823 yes 40.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/256/135/GCA_015256135.1_ASM1525613v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570740 ASM1525613v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:08.820 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 6.5x 93.03 0.71 86.55 1.25 JABZMT01 1384 1427 1427 23 3 16 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015256185.1 HMT-467 JCVI_10_bin.4 Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci JCVI_10_bin.4" 36 1817673 yes 39.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/256/185/GCA_015256185.1_ASM1525618v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJNA624185 143393 SAMN14570736 ASM1525618v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:08.756 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 8.2x 100 0.71 99.78 0.09 JABZMP01 1682 1747 1747 25 1 38 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_015256235.1 HMT-557 JCVI_32_bin.35 Named Cultivated Oral (Abundance: Medium) "HMT-557 Peptostreptococcaceae [G9 ""Eubacterium""] brachy JCVI_32_bin.35" 28 1461482 yes 38.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/256/235/GCA_015256235.1_ASM1525623v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Gallibacter;s__Gallibacter brachus PRJNA624185 35517 SAMN14570735 ASM1525623v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:08.740 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 24.4x 96.1 0.71 98.88 0.89 JABZMO01 1293 1333 1333 13 0 26 1 Gallibacter_brachus_homd_HMT_557 GCA_015256265.1 HMT-118 JCVI_32_bin.14 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus JCVI_32_bin.14 234 2000039 yes 45.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/256/265/GCA_015256265.1_ASM1525626v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA624185 218538 SAMN14570731 ASM1525626v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:08.676 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.6x 97.78 96.84 3.29 99.56 1.63 GCF_015256265.1 JABZMK01 1881 1992 1992 59 1 50 1 Dialister_invisus_homd_HMT_118 GCA_015256915.3 HMT-400 JCVI_32_bin.49 Unnamed Cultivated Oral (Abundance: No Data) HMT-400 Nanogingivalis sp. HMT-400 JCVI_32_bin.49 1 637739 yes 35.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/256/915/GCA_015256915.3_ASM1525691v3 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanogingivalaceae;g__Nanogingivalis;s__Nanogingivalis sp900555945 PRJNA624185 1917697 SAMN14570699 ASM1525691v3 Complete Genome Unicycler v. 0.4.8 2020-04-09T20:00:08.167 USA: UCLA School of Dentistry saliva Oxford Nanopore GridION J. Craig Venter Institute 200.0x 66.95 0 96.54 0.64 609 656 656 3 6 38 0 GCA_015257395.1 HMT-371 JCVI_5_bin.8 Named NVP Uncultivated Oral (Abundance: Scarce) HMT-371 Nanosyncoccus nanoralicus JCVI_5_bin.8 58 848618 yes 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/395/GCA_015257395.1_ASM1525739v1 Undefined PRJNA624185 2725945 SAMN14570674 ASM1525739v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:07.756 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.6x JABZKF01 753 803 803 2 5 43 0 Nanosyncoccus_nanoralicus_homd_HMT_371 GCA_015257445.1 HMT-351 JCVI_47_bin.30 Phylotype Uncultivated Oral (Abundance: High) HMT-351 Nanosyncoccus sp. HMT-351 JCVI_47_bin.30 185 714681 yes 41.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/445/GCA_015257445.1_ASM1525744v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp015257445 PRJNA624185 2725945 SAMN14570673 ASM1525744v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:07.740 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 7.4x 76.25 0 92.64 1.01 JABZKE01 637 677 677 2 0 38 0 Nanosyncoccus_sp_HMT_351_homd_HMT_351 GCA_015257455.1 HMT-351 JCVI_44_bin.1 Phylotype Uncultivated Oral (Abundance: High) HMT-351 Nanosyncoccus sp. HMT-351 JCVI_44_bin.1 35 721923 yes 41.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/455/GCA_015257455.1_ASM1525745v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp015257455 PRJNA624185 2725945 SAMN14570672 ASM1525745v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:07.726 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 6.8x 78.21 0 85.76 1.91 JABZKD01 631 690 690 2 8 49 0 Nanosyncoccus_sp_HMT_351_homd_HMT_351 GCA_015257485.1 HMT-351 JCVI_32_bin.36 Phylotype Uncultivated Oral (Abundance: High) HMT-351 Nanosyncoccus sp. HMT-351 JCVI_32_bin.36 32 667180 yes 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/485/GCA_015257485.1_ASM1525748v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp015257485 PRJNA624185 2725945 SAMN14570671 ASM1525748v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:07.710 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.0x 81.45 0 91.42 0.09 JABZKC01 606 647 647 1 0 40 0 Nanosyncoccus_sp_HMT_351_homd_HMT_351 GCA_015257495.1 HMT-352 JCVI_1_bin.14 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 JCVI_1_bin.14 15 727057 yes 43.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/495/GCA_015257495.1_ASM1525749v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp900556355 PRJNA624185 2725945 SAMN14570669 ASM1525749v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:07.680 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.5x 65.81 0 98.85 0.67 JABZKA01 736 789 789 5 4 44 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_015257505.1 HMT-364 JCVI_1_bin.4 Phylotype Uncultivated Oral (Abundance: Scarce) HMT-364 Nanosyncoccus sp. HMT-364 JCVI_1_bin.4 26 776077 yes 41.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/505/GCA_015257505.1_ASM1525750v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosyncoccaceae;g__Nanosyncoccus;s__Nanosyncoccus sp015257505 PRJNA624185 2725945 SAMN14570670 ASM1525750v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:07.693 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 7.6x 82.6 0 95.68 0.42 JABZKB01 711 763 763 1 2 49 0 Nanosyncoccus_sp_HMT_364_homd_HMT_364 GCA_015257545.1 HMT-348 JCVI_6_bin.10 Phylotype Uncultivated Oral (Abundance: Medium) HMT-348 Parvisynbacter sp. HMT-348 JCVI_6_bin.10 22 927337 yes 37.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/545/GCA_015257545.1_ASM1525754v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__UBA10027;g__SDRW01;s__SDRW01 sp007845485 PRJNA624185 2725945 SAMN14570668 ASM1525754v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:07.663 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 13.5x 64.67 1.71 92.8 1.14 JABZJZ01 888 929 929 5 0 36 0 Parvisynbacter_sp_HMT_348_homd_HMT_348 GCA_015257555.2 HMT-348 JCVI_32_bin.19 Phylotype Uncultivated Oral (Abundance: Medium) HMT-348 Parvisynbacter sp. HMT-348 JCVI_32_bin.19 1 841302 yes 38.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/555/GCA_015257555.2_ASM1525755v2 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__UBA10027;g__SDRW01;s__SDRW01 sp007845485 PRJNA624185 2933970 SAMN14570667 ASM1525755v2 Complete Genome Flye v. 2.9-b1768; Polypolish v. 0.4.3 2020-04-09T20:00:07.650 USA: UCLA School of Dentistry saliva Oxford Nanopore GridION; Illumina MiSeq J. Craig Venter Institute 1000.0x 65.1 0.85 97.33 0.11 804 853 853 4 3 42 0 Parvisynbacter_sp_HMT_348_homd_HMT_348 GCA_015257575.1 HMT-348 JCVI_1_bin.5 Phylotype Uncultivated Oral (Abundance: Medium) HMT-348 Parvisynbacter sp. HMT-348 JCVI_1_bin.5 36 720911 yes 37.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/575/GCA_015257575.1_ASM1525757v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__UBA10027;g__SDRW01;s__SDRW01 sp007845485 PRJNA624185 2725945 SAMN14570666 ASM1525757v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:07.633 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 1.4x 64.25 0 91.31 0 JABZJX01 704 745 745 3 1 37 0 Parvisynbacter_sp_HMT_348_homd_HMT_348 GCA_015257605.1 HMT-346 JCVI_32_bin.12 Phylotype Uncultivated Oral (Abundance: High) HMT-346 Saccharimonas sp. HMT-346 JCVI_32_bin.12 76 696341 yes 47.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/605/GCA_015257605.1_ASM1525760v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp015257605 PRJNA624185 2725945 SAMN14570664 ASM1525760v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:07.596 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 16.1x 66.58 0 75 0.56 JABZJV01 690 0 0 5 1 37 0 Saccharimonas_sp_HMT_346_homd_HMT_346 GCA_015257615.1 HMT-346 JCVI_6_bin.12 Phylotype Uncultivated Oral (Abundance: High) HMT-346 Saccharimonas sp. HMT-346 JCVI_6_bin.12 69 777410 yes 48.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/615/GCA_015257615.1_ASM1525761v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp905372095 PRJNA624185 2725945 SAMN14570665 ASM1525761v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:07.616 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 67.7x 61.9 0.93 86.12 0.67 JABZJW01 777 820 820 5 1 37 0 Saccharimonas_sp_HMT_346_homd_HMT_346 GCA_015257665.1 HMT-394 JCVI_32_bin.57 Unnamed Cultivated in coculture Oral (Abundance: No Data) HMT-394 Saccharimonas sp. HMT-394 JCVI_32_bin.57 32 1040784 yes 51.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/665/GCA_015257665.1_ASM1525766v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp015257665 PRJNA624185 2725945 SAMN14570661 ASM1525766v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:07.550 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.5x 57.83 0 97.74 0.36 JABZJS01 1051 1095 1095 3 1 40 0 Saccharimonas_sp_HMT_394_homd_HMT_394 GCA_015257725.1 HMT-397 JCVI_32_bin.44 Unnamed Cultivated in coculture Oral (Abundance: No Data) HMT-397 Saccharimonas sp. HMT-397 JCVI_32_bin.44 31 725781 yes 47.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/725/GCA_015257725.1_ASM1525772v1 Undefined PRJNA624185 2725942 SAMN14570659 ASM1525772v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:07.516 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 29.5x JABZJQ01 734 775 775 3 1 37 0 GCA_015257785.3 HMT-399 JCVI_28_bin.11 Unnamed Cultivated Oral (Abundance: No Data) HMT-399 Nanogingivalis sp. HMT-399 JCVI_28_bin.11 1 691584 yes 36.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/785/GCA_015257785.3_ASM1525778v3 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanogingivalaceae;g__Nanogingivalis;s__Nanogingivalis sp015257795 PRJNA624185 2725942 SAMN14570656 ASM1525778v3 Complete Genome Unicycler v. v0.4.8 2020-04-09T20:00:07.470 USA: UCLA School of Dentistry saliva Oxford Nanopore GridION J. Craig Venter Institute 100.0x 63.74 0 99.22 0.01 686 735 735 3 6 40 0 Nanogingivalis_sp_HMT_399_homd_HMT_399 GCA_015257795.3 HMT-399 JCVI_27_bin.3 Unnamed Cultivated Oral (Abundance: No Data) HMT-399 Nanogingivalis sp. HMT-399 JCVI_27_bin.3 1 663355 yes 36.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/795/GCA_015257795.3_ASM1525779v3 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanogingivalaceae;g__Nanogingivalis;s__Nanogingivalis sp015257795 PRJNA624185 2725942 SAMN14570655 ASM1525779v3 Complete Genome Unicycler v. 0.4.8; flye v. 2.8-b1674; Trycycler v. 0.3.0 2020-04-09T20:00:07.450 USA: UCLA School of Dentistry saliva Oxford Nanopore GridION J. Craig Venter Institute 100.0x 63.74 0 99.16 0.01 643 692 692 3 6 40 0 Nanogingivalis_sp_HMT_399_homd_HMT_399 GCA_015257815.1 HMT-399 .JCVI_1_bin.12 Unnamed Cultivated Oral (Abundance: No Data) HMT-399 Nanogingivalis sp. HMT-399 .JCVI_1_bin.12 48 640359 yes 36.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/815/GCA_015257815.1_ASM1525781v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanogingivalaceae;g__Nanogingivalis;s__Nanogingivalis sp015257795 PRJNA624185 2725942 SAMN14570654 ASM1525781v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:07.433 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 22.3x 81.55 1.96 98.76 0.73 JABZJL01 629 671 671 3 1 38 0 Nanogingivalis_sp_HMT_399_homd_HMT_399 GCA_015258205.1 HMT-875 JCVI_11_bin.10 Phylotype Uncultivated Oral (Abundance: Medium) HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 JCVI_11_bin.10 82 897004 yes 35.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/258/205/GCA_015258205.1_ASM1525820v1 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333295 PRJNA624185 2044595 SAMN14570635 ASM1525820v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:07.140 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 1.4x 79.08 0 91.18 5.25 JABZIS01 1648 1687 1687 3 0 35 1 Absconditicoccaceae__G1__bacterium_HMT_875_homd_HMT_875 GCA_015258205.1 HMT-875 JCVI_11_bin.10 Phylotype Uncultivated Oral (Abundance: Medium) HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 JCVI_11_bin.10 82 897004 yes 35.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/258/205/GCA_015258205.1_ASM1525820v1 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333295 PRJNA624185 2044595 SAMN14570635 ASM1525820v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:07.140 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 1.4x 79.08 0 91.18 5.25 JABZIS01 1648 1687 1687 3 0 35 1 Absconditicoccaceae__G1_HMT_345_874_875 GCA_015259385.1 HMT-181 JCVI_11_bin.15 Named NVP Cultivated Oral (Abundance: Medium) HMT-181 Schaalia lingnae JCVI_11_bin.15 165 1712975 yes 56.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/385/GCA_015259385.1_ASM1525938v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000308055 PRJNA624185 29317 SAMN14570574 ASM1525938v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:00:06.146 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.8x 91.79 2.51 90.09 0.76 JABZGJ01 1500 1561 1561 8 1 52 0 Schaalia_lingnae_homd_HMT_181 GCA_015259405.1 HMT-181 JCVI_38_bin.7 Named NVP Cultivated Oral (Abundance: Medium) HMT-181 Schaalia lingnae JCVI_38_bin.7 164 1685883 yes 55.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/405/GCA_015259405.1_ASM1525940v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia pyogenes_B PRJNA624185 29317 SAMN14570572 ASM1525940v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:06.113 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.7x 92.81 0.63 85.89 1 JABZGH01 1479 1526 1526 7 0 40 0 Schaalia_lingnae_homd_HMT_181 GCA_015259495.1 HMT-866 JCVI_32_bin.45 Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii JCVI_32_bin.45 89 1786652 yes 58.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/495/GCA_015259495.1_ASM1525949v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJNA624185 55565 SAMN14570566 ASM1525949v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:06.010 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.0x 95.26 0.95 95.85 0.31 JABZGB01 1462 1513 1513 9 2 40 0 Actinomyces_graevenitzii_homd_HMT_866 GCA_015259565.1 HMT-427 JCVI_32_bin.17 Unnamed Cultivated Oral (Abundance: Medium) HMT-427 Abiotrophia sp. HMT-427 JCVI_32_bin.17 93 2016058 yes 46.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/565/GCA_015259565.1_ASM1525956v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;s__Abiotrophia sp001815865 PRJNA624185 76631 SAMN14570561 ASM1525956v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:05.923 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.9x 98.6 2.01 100 1.42 GCF_015259565.1 JABZFW01 1857 1895 1895 20 0 17 1 Abiotrophia_sp_HMT_427_homd_HMT_427 GCA_015259595.1 HMT-427 JCVI_44_bin.32 Unnamed Cultivated Oral (Abundance: Medium) HMT-427 Abiotrophia sp. HMT-427 JCVI_44_bin.32 83 1940269 yes 46.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/595/GCA_015259595.1_ASM1525959v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;s__Abiotrophia sp001815865 PRJNA624185 76631 SAMN14570562 ASM1525959v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:05.940 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.5x 95.61 0.18 98.98 0.07 GCF_015259595.1 JABZFX01 1764 1796 1796 19 0 12 1 Abiotrophia_sp_HMT_427_homd_HMT_427 GCA_015259645.1 HMT-096 JCVI_32_bin.48 Unnamed Cultivated Oral (Abundance: Medium) HMT-096 Lachnospiraceae [G2] bacterium HMT-096 JCVI_32_bin.48 191 1791370 yes 39.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/645/GCA_015259645.1_ASM1525964v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__F0428;s__F0428 sp003043955 PRJNA624185 1898203 SAMN14570802 ASM1525964v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:09.800 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.8x 93.79 0.16 98.06 0.3 JABZPD01 1653 1695 1695 13 0 28 1 Lachnospiraceae__G2__bacterium_HMT_096_homd_HMT_096 GCA_015259765.1 HMT-681 JCVI_36_bin.5 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_36_bin.5 135 2207952 yes 59.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/765/GCA_015259765.1_ASM1525976v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 1885016 SAMN14571035 ASM1525976v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.546 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 8.4x 96 0 97.89 0.07 GCF_015259765.1 JABZXY01 1709 1768 1768 12 2 44 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_015259765.1 HMT-681 JCVI_36_bin.5 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_36_bin.5 135 2207952 yes 59.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/765/GCA_015259765.1_ASM1525976v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 1885016 SAMN14571035 ASM1525976v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.546 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 8.4x 96 0 97.89 0.07 GCF_015259765.1 JABZXY01 1709 1768 1768 12 2 44 1 Rothia_mucilaginosa_HMT_147_681 GCA_015259795.1 HMT-195 JCVI_32_bin.61 Named Cultivated Oral (Abundance: Medium) HMT-195 Scardovia wiggsiae JCVI_32_bin.61 9 1490753 yes 53.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/795/GCA_015259795.1_ASM1525979v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia wiggsiae PRJNA624185 230143 SAMN14571036 ASM1525979v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:09.560 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 10.2x 96.47 96.57 0.34 96.55 0.42 GCF_015259795.1 JABZXZ01 1222 1274 1274 6 0 45 1 Scardovia_wiggsiae_homd_HMT_195 GCA_015259835.1 HMT-681 JCVI_44_bin.2 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_44_bin.2 113 2370162 yes 59.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/835/GCA_015259835.1_ASM1525983v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 43675 SAMN14571028 ASM1525983v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:09.440 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 16.5x 95.27 99.22 0.76 100 0.86 GCF_015259835.1 JABZXR01 1884 1960 1960 16 4 55 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_015259835.1 HMT-681 JCVI_44_bin.2 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_44_bin.2 113 2370162 yes 59.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/835/GCA_015259835.1_ASM1525983v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 43675 SAMN14571028 ASM1525983v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:09.440 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 16.5x 95.27 99.22 0.76 100 0.86 GCF_015259835.1 JABZXR01 1884 1960 1960 16 4 55 1 Rothia_mucilaginosa_HMT_147_681 GCA_015259875.1 HMT-681 JCVI_35_bin.1 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_35_bin.1 95 2005514 yes 59.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/875/GCA_015259875.1_ASM1525987v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 1885016 SAMN14571034 ASM1525987v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.530 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 12.0x 86.43 0 90.34 1.29 JABZXX01 1569 1628 1628 13 2 43 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_015259875.1 HMT-681 JCVI_35_bin.1 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_35_bin.1 95 2005514 yes 59.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/875/GCA_015259875.1_ASM1525987v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 1885016 SAMN14571034 ASM1525987v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.530 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 12.0x 86.43 0 90.34 1.29 JABZXX01 1569 1628 1628 13 2 43 1 Rothia_mucilaginosa_HMT_147_681 GCA_015259885.1 HMT-681 JCVI_32_bin.39 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_32_bin.39 138 2177395 yes 59.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/885/GCA_015259885.1_ASM1525988v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJNA624185 1885016 SAMN14571031 ASM1525988v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:09.483 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.1x 94.72 0.72 94.87 1.54 GCF_015259885.1 JABZXU01 1726 1785 1785 13 3 41 2 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_015259885.1 HMT-681 JCVI_32_bin.39 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_32_bin.39 138 2177395 yes 59.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/885/GCA_015259885.1_ASM1525988v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJNA624185 1885016 SAMN14571031 ASM1525988v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:09.483 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.1x 94.72 0.72 94.87 1.54 GCF_015259885.1 JABZXU01 1726 1785 1785 13 3 41 2 Rothia_mucilaginosa_HMT_147_681 GCA_015259955.1 HMT-681 JCVI_41_bin.16 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_41_bin.16 135 2151009 yes 59.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/955/GCA_015259955.1_ASM1525995v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 43675 SAMN14571027 ASM1525995v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.423 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 30.5x 94.63 93.33 0.4 97.19 0.49 GCF_015259955.1 JABZXQ01 1684 1736 1736 12 1 39 0 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_015259955.1 HMT-681 JCVI_41_bin.16 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_41_bin.16 135 2151009 yes 59.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/955/GCA_015259955.1_ASM1525995v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 43675 SAMN14571027 ASM1525995v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.423 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 30.5x 94.63 93.33 0.4 97.19 0.49 GCF_015259955.1 JABZXQ01 1684 1736 1736 12 1 39 0 Rothia_mucilaginosa_HMT_147_681 GCA_015259995.1 HMT-681 JCVI_31A_bin.2 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_31A_bin.2 177 2056875 yes 59.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/995/GCA_015259995.1_ASM1525999v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 43675 SAMN14571023 ASM1525999v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.363 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 33.1x 95.5 87.67 1.56 86.23 0.23 JABZXM01 1667 1717 1717 12 2 35 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_015259995.1 HMT-681 JCVI_31A_bin.2 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI_31A_bin.2 177 2056875 yes 59.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/995/GCA_015259995.1_ASM1525999v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 43675 SAMN14571023 ASM1525999v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.363 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 33.1x 95.5 87.67 1.56 86.23 0.23 JABZXM01 1667 1717 1717 12 2 35 1 Rothia_mucilaginosa_HMT_147_681 GCA_015260075.1 HMT-306 JCVI_43_bin.8 Named Cultivated Oral (Abundance: High) HMT-306 Prevotella vespertina JCVI_43_bin.8 108 2447744 yes 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/075/GCA_015260075.1_ASM1526007v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella vespertina PRJNA624185 59823 SAMN14571017 ASM1526007v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.273 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 16.4x 96.18 0 93.06 0.02 GCF_015260075.1 JABZXG01 1977 2021 2021 7 0 36 1 Prevotella_vespertina_homd_HMT_306 GCA_015260265.1 HMT-469 JCVI_9_bin.4 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_9_bin.4 120 2961485 yes 40.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/265/GCA_015260265.1_ASM1526026v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 59823 SAMN14571010 ASM1526026v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.170 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.9x 91.77 1.89 90.45 2.9 GCF_015260265.1 JABZWZ01 2284 2333 2333 7 1 40 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015260355.1 HMT-469 JCVI_36_bin.6 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_36_bin.6 220 2656281 yes 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/355/GCA_015260355.1_ASM1526035v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 59823 SAMN14571005 ASM1526035v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.096 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 6.2x 94.34 0.34 92.22 0.75 GCF_015260355.1 JABZWU01 2010 2059 2059 6 1 41 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015260375.1 HMT-469 JCVI_37_bin.4 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_37_bin.4 86 3078150 yes 40.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/375/GCA_015260375.1_ASM1526037v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 59823 SAMN14571006 ASM1526037v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:09.113 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 16.9x 99.02 0.08 98.26 0.06 GCF_015260375.1 JABZWV01 2467 2516 2516 9 2 37 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015260395.1 HMT-469 JCVI_35_bin.7 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_35_bin.7 145 3083634 yes 40.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/395/GCA_015260395.1_ASM1526039v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 59823 SAMN14571004 ASM1526039v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:09.083 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 29.1x 98.39 0.11 99.91 0 GCF_015260395.1 JABZWT01 2417 2469 2469 10 0 41 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015260405.1 HMT-469 JCVI_34_bin.5 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_34_bin.5 139 3109113 yes 40.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/405/GCA_015260405.1_ASM1526040v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 59823 SAMN14571003 ASM1526040v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.070 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 8.4x 98.5 0.82 94.14 0.05 GCF_015260405.1 JABZWS01 2416 2473 2473 11 6 39 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015260455.1 HMT-469 JCVI_33_bin.7 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_33_bin.7 135 3033758 yes 40.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/455/GCA_015260455.1_ASM1526045v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 59823 SAMN14571002 ASM1526045v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:09.053 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 9.6x 95.06 0.22 90.84 0.95 GCF_015260455.1 JABZWR01 2413 2462 2462 9 3 36 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015260465.1 HMT-469 JCVI_27_bin.6 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_27_bin.6 149 2962341 yes 40.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/465/GCA_015260465.1_ASM1526046v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 59823 SAMN14571000 ASM1526046v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:09.023 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 106.0x 97.42 0.43 95.1 0.15 GCF_015260465.1 JABZWP01 2281 2327 2327 8 0 37 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015260495.1 HMT-469 JCVI_18_bin.4 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_18_bin.4 120 3009011 yes 40.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/495/GCA_015260495.1_ASM1526049v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 59823 SAMN14570996 ASM1526049v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.966 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 26.2x 98.56 0.04 99.9 0.06 GCF_015260495.1 JABZWL01 2350 2397 2397 8 1 37 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015260605.1 HMT-469 JCVI_13_bin.7 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_13_bin.7 167 3031294 yes 40.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/605/GCA_015260605.1_ASM1526060v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 59823 SAMN14570992 ASM1526060v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.906 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 7.3x 97.45 0 95.31 0.01 GCF_015260605.1 JABZWH01 2358 2409 2409 11 0 39 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015260635.1 HMT-469 JCVI_11_bin.12 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_11_bin.12 87 3029562 yes 40.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/635/GCA_015260635.1_ASM1526063v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 59823 SAMN14570990 ASM1526063v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.876 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 54.8x 98.62 0.15 97.52 0.15 GCF_015260635.1 JABZWF01 2362 2418 2418 9 1 45 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015260745.1 HMT-410 JCVI_12_bin.21 Unnamed Cultivated Oral (Abundance: Medium) HMT-410 Prevotella sp. HMT-410 JCVI_12_bin.21 192 2379466 yes 45.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/745/GCA_015260745.1_ASM1526074v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp000599605 PRJNA624185 59823 SAMN14570986 ASM1526074v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.810 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.5x 96.91 0.37 92.57 0.73 GCF_015260745.1 JABZWB01 2022 2073 2073 9 0 41 1 Prevotella_sp_HMT_410_homd_HMT_410 GCA_015260835.1 HMT-795 JCVI_44_bin.17 Named Cultivated Oral (Abundance: Medium) HMT-795 Hoylesella shahii JCVI_44_bin.17 150 3277821 yes 44.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/835/GCA_015260835.1_ASM1526083v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella shahii PRJNA624185 228603 SAMN14570982 ASM1526083v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.750 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.4x 98.14 99.28 0.41 98.32 0.22 GCF_015260835.1 JABZVX01 2575 2613 2613 7 1 29 1 Hoylesella_shahii_homd_HMT_795 GCA_015260845.1 HMT-795 JCVI_11_bin.5 Named Cultivated Oral (Abundance: Medium) HMT-795 Hoylesella shahii JCVI_11_bin.5 175 3170731 yes 44.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/845/GCA_015260845.1_ASM1526084v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella shahii PRJNA624185 228603 SAMN14570981 ASM1526084v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.733 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.2x 98.11 97.44 0.34 93.16 1.16 GCF_015260845.1 JABZVW01 2422 2471 2471 9 1 38 1 Hoylesella_shahii_homd_HMT_795 GCA_015260875.1 HMT-307 JCVI_43_bin.5 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_43_bin.5 260 2560367 yes 41.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/875/GCA_015260875.1_ASM1526087v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570979 ASM1526087v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.693 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.6x 97.81 81.03 0.69 89.64 1.44 JABZVU01 1972 2009 2009 9 0 27 1 Segatella_salivae_homd_HMT_307 GCA_015260975.1 HMT-307 JCVI_38_bin.4 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_38_bin.4 136 2781272 yes 41.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/975/GCA_015260975.1_ASM1526097v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570975 ASM1526097v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.633 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.3x 97.6 98.27 0.01 98.98 0.06 GCF_015260975.1 JABZVQ01 2237 2287 2287 11 0 38 1 Segatella_salivae_homd_HMT_307 GCA_015260985.1 HMT-307 JCVI_34_bin.6 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_34_bin.6 204 2528043 yes 41.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/985/GCA_015260985.1_ASM1526098v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570974 ASM1526098v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.620 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 9.6x 97.77 90.15 0.34 85.98 0.74 JABZVP01 1994 2038 2038 8 0 36 0 Segatella_salivae_homd_HMT_307 GCA_015261015.1 HMT-307 JCVI_32_bin.26 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_32_bin.26 278 2410886 yes 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/015/GCA_015261015.1_ASM1526101v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570972 ASM1526101v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.590 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 19.9x 97.91 90.31 1.6 86.82 1 JABZVN01 1847 1878 1878 11 0 20 0 Segatella_salivae_homd_HMT_307 GCA_015261035.1 HMT-307 JCVI_33_bin.16 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_33_bin.16 76 2700690 yes 41.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/035/GCA_015261035.1_ASM1526103v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570973 ASM1526103v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.606 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 8.3x 97.74 98.41 0 94.7 0.03 GCF_015261035.1 JABZVO01 2172 2213 2213 9 0 32 0 Segatella_salivae_homd_HMT_307 GCA_015261095.1 HMT-307 JCVI_30_bin.2 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_30_bin.2 175 2979517 yes 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/095/GCA_015261095.1_ASM1526109v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570970 ASM1526109v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.563 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.3x 97.54 98.1 1.75 94.37 0.84 GCF_015261095.1 JABZVL01 2429 2487 2487 10 0 47 1 Segatella_salivae_homd_HMT_307 GCA_015261115.1 HMT-307 JCVI_28_bin.12 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_28_bin.12 204 2665629 yes 41.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/115/GCA_015261115.1_ASM1526111v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570968 ASM1526111v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.533 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.8x 97.71 96.01 0.34 93.19 0.03 GCF_015261115.1 JABZVJ01 2119 2161 2161 10 1 30 1 Segatella_salivae_homd_HMT_307 GCA_015261235.1 HMT-307 JCVI_19_bin.4 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_19_bin.4 242 2469994 yes 41.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/235/GCA_015261235.1_ASM1526123v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570962 ASM1526123v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.440 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 17.2x 97.58 90.12 1.07 86.21 0 JABZVD01 1936 1969 1969 8 1 23 1 Segatella_salivae_homd_HMT_307 GCA_015261245.1 HMT-307 JCVI_14_bin.2 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_14_bin.2 204 2420300 yes 41.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/245/GCA_015261245.1_ASM1526124v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570960 ASM1526124v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.410 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 7.8x 97.69 77.93 0 85.21 0.05 JABZVB01 1900 1938 1938 7 2 28 1 Segatella_salivae_homd_HMT_307 GCA_015261295.1 HMT-307 JCVI_10_bin.2 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_10_bin.2 115 2648668 yes 41.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/295/GCA_015261295.1_ASM1526129v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570958 ASM1526129v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.380 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 20.8x 97.67 97.83 0 98.89 0.04 GCF_015261295.1 JABZUZ01 2087 2137 2137 9 0 41 0 Segatella_salivae_homd_HMT_307 GCA_015261305.1 HMT-307 JCVI_13_bin.5 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae JCVI_13_bin.5 68 2842649 yes 41.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/305/GCA_015261305.1_ASM1526130v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA624185 228604 SAMN14570959 ASM1526130v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.396 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 10.9x 97.51 98.32 0 94.86 0.03 GCF_015261305.1 JABZVA01 2290 2343 2343 10 1 41 1 Segatella_salivae_homd_HMT_307 GCA_015261335.1 HMT-714 JCVI_8_bin.11 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_8_bin.11 117 2388918 yes 37.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/335/GCA_015261335.1_ASM1526133v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570956 ASM1526133v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.350 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.5x 98.4 94.5 0.41 86.13 0.24 GCF_015261335.1 JABZUX01 1888 1931 1931 7 0 36 0 Prevotella_pallens_homd_HMT_714 GCA_015261375.1 HMT-714 JCVI_7_bin.6 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_7_bin.6 117 2416341 yes 37.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/375/GCA_015261375.1_ASM1526137v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570955 ASM1526137v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.336 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.1x 98.51 95.06 1.11 87.73 0.18 GCF_015261375.1 JABZUW01 1916 1960 1960 9 0 34 1 Prevotella_pallens_homd_HMT_714 GCA_015261395.1 HMT-714 JCVI_6_bin.9 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_6_bin.9 121 2550145 yes 37.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/395/GCA_015261395.1_ASM1526139v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570954 ASM1526139v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.320 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 10.1x 98.54 96.65 1.63 93.83 2.21 GCF_015261395.1 JABZUV01 2030 2074 2074 8 0 35 1 Prevotella_pallens_homd_HMT_714 GCA_015261455.1 HMT-714 JCVI_48_bin.20 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_48_bin.20 202 2465798 yes 37.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/455/GCA_015261455.1_ASM1526145v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570950 ASM1526145v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.256 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.6x 98.5 95.86 0.08 91.57 0.18 GCF_015261455.1 JABZUR01 1902 1938 1938 9 0 26 1 Prevotella_pallens_homd_HMT_714 GCA_015261465.1 HMT-714 JCVI_49_bin.21 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_49_bin.21 128 2577142 yes 37.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/465/GCA_015261465.1_ASM1526146v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570951 ASM1526146v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.270 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.9x 98.5 95.44 0.76 91.61 1.45 GCF_015261465.1 JABZUS01 2072 2107 2107 7 0 27 1 Prevotella_pallens_homd_HMT_714 GCA_015261495.1 HMT-714 JCVI_42_bin.5 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_42_bin.5 67 2753317 yes 37.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/495/GCA_015261495.1_ASM1526149v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570948 ASM1526149v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.226 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 8.5x 98.41 99.66 0.34 99.95 0.43 GCF_015261495.1 JABZUP01 2235 2283 2283 10 1 36 1 Prevotella_pallens_homd_HMT_714 GCA_015261505.1 HMT-714 JCVI_47_bin.25 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_47_bin.25 85 2546294 yes 37.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/505/GCA_015261505.1_ASM1526150v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570949 ASM1526150v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.240 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.2x 98.52 96.3 0 89.89 0.13 GCF_015261505.1 JABZUQ01 2039 2083 2083 10 0 33 1 Prevotella_pallens_homd_HMT_714 GCA_015261515.1 HMT-714 JCVI_40_bin.16 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_40_bin.16 86 2862168 yes 37.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/515/GCA_015261515.1_ASM1526151v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570947 ASM1526151v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.210 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 32.0x 98.43 98.31 1.18 98.92 1.27 GCF_015261515.1 JABZUO01 2369 2421 2421 8 2 41 1 Prevotella_pallens_homd_HMT_714 GCA_015261555.1 HMT-714 JCVI_38_bin.1 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_38_bin.1 101 2642913 yes 37.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/555/GCA_015261555.1_ASM1526155v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570945 ASM1526155v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.180 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 8.5x 98.32 98.33 1.46 95.04 1.79 GCF_015261555.1 JABZUM01 2144 2187 2187 8 0 34 1 Prevotella_pallens_homd_HMT_714 GCA_015261585.1 HMT-714 JCVI_34_bin.7 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_34_bin.7 91 2542694 yes 37.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/585/GCA_015261585.1_ASM1526158v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570944 ASM1526158v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.166 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 11.1x 98.47 97.96 0.34 95.53 0.13 GCF_015261585.1 JABZUL01 2006 2054 2054 9 1 37 1 Prevotella_pallens_homd_HMT_714 GCA_015261615.1 HMT-714 JCVI_33_bin.2 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_33_bin.2 73 2748189 yes 37.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/615/GCA_015261615.1_ASM1526161v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570943 ASM1526161v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.150 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 18.2x 98.47 98.51 0.45 96.6 0.35 GCF_015261615.1 JABZUK01 2273 2320 2320 8 0 38 1 Prevotella_pallens_homd_HMT_714 GCA_015261625.1 HMT-714 JCVI_32_bin.58 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_32_bin.58 85 2571726 yes 37.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/625/GCA_015261625.1_ASM1526162v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570942 ASM1526162v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.136 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 38.3x 98.51 96.96 0 94.54 0.19 GCF_015261625.1 JABZUJ01 2035 2084 2084 9 0 39 1 Prevotella_pallens_homd_HMT_714 GCA_015261645.1 HMT-714 JCVI_30_bin.10 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_30_bin.10 89 2785755 yes 37.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/645/GCA_015261645.1_ASM1526164v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570941 ASM1526164v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.120 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 71.3x 98.32 99.21 0.34 98.81 0.66 GCF_015261645.1 JABZUI01 2300 2342 2342 9 0 32 1 Prevotella_pallens_homd_HMT_714 GCA_015261675.1 HMT-714 JCVI_28_bin.2 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_28_bin.2 105 2635776 yes 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/675/GCA_015261675.1_ASM1526167v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570939 ASM1526167v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.090 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.0x 98.37 98.85 0 96.8 0.29 GCF_015261675.1 JABZUG01 2123 2166 2166 9 0 33 1 Prevotella_pallens_homd_HMT_714 GCA_015261695.1 HMT-714 JCVI_26_bin.7 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_26_bin.7 123 2504788 yes 37.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/695/GCA_015261695.1_ASM1526169v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570937 ASM1526169v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.060 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 6.8x 98.5 97.81 0.99 93.65 0.27 GCF_015261695.1 JABZUE01 1993 2052 2052 8 3 48 0 Prevotella_pallens_homd_HMT_714 GCA_015261705.1 HMT-714 JCVI_29_bin.5 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_29_bin.5 103 2612025 yes 37.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/705/GCA_015261705.1_ASM1526170v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570940 ASM1526170v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.106 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 13.0x 98.32 98.98 0 98.32 0.49 GCF_015261705.1 JABZUH01 2129 2165 2165 8 0 27 1 Prevotella_pallens_homd_HMT_714 GCA_015261715.1 HMT-714 JCVI_27_bin.4 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_27_bin.4 271 2300340 yes 37.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/715/GCA_015261715.1_ASM1526171v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570938 ASM1526171v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:08.073 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 7.3x 98.37 91.48 1.54 86.04 0.56 GCF_015261715.1 JABZUF01 1803 1846 1846 8 1 33 1 Prevotella_pallens_homd_HMT_714 GCA_015261725.1 HMT-714 JCVI_25_bin.14 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_25_bin.14 142 2519827 yes 37.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/725/GCA_015261725.1_ASM1526172v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570936 ASM1526172v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.043 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.5x 98.38 96.98 0.34 92.83 0.11 GCF_015261725.1 JABZUD01 2014 2054 2054 7 0 32 1 Prevotella_pallens_homd_HMT_714 GCA_015261775.1 HMT-714 JCVI_24_bin.6 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_24_bin.6 95 2743181 yes 36.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/775/GCA_015261775.1_ASM1526177v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570935 ASM1526177v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.030 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.8x 98.33 99.26 0.62 96.53 0.57 GCF_015261775.1 JABZUC01 2243 2289 2289 8 0 37 1 Prevotella_pallens_homd_HMT_714 GCA_015261795.1 HMT-714 JCVI_22A_bin.10 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_22A_bin.10 116 2639886 yes 37.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/795/GCA_015261795.1_ASM1526179v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570933 ASM1526179v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:08.000 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 16.8x 98.41 99.13 0 95.33 0.29 GCF_015261795.1 JABZUA01 2147 2190 2190 7 0 35 1 Prevotella_pallens_homd_HMT_714 GCA_015261835.1 HMT-714 JCVI_19_bin.10 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_19_bin.10 217 2528698 yes 36.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/835/GCA_015261835.1_ASM1526183v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570930 ASM1526183v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.953 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.0x 98.34 96.6 0.11 92.76 0.28 GCF_015261835.1 JABZTX01 2037 2081 2081 9 0 34 1 Prevotella_pallens_homd_HMT_714 GCA_015261845.1 HMT-714 JCVI_1_bin.7 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_1_bin.7 96 2802193 yes 37.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/845/GCA_015261845.1_ASM1526184v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570931 ASM1526184v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.970 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 7.8x 98.43 99.21 0.45 99.9 0.4 JABZTY01 2308 2361 2361 9 1 42 1 Prevotella_pallens_homd_HMT_714 GCA_015261905.1 HMT-714 JCVI_18_bin.3 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_18_bin.3 70 2609891 yes 37.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/905/GCA_015261905.1_ASM1526190v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570929 ASM1526190v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.940 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 17.3x 98.49 98.87 0 99.93 0.16 GCF_015261905.1 JABZTW01 2102 2149 2149 8 1 37 1 Prevotella_pallens_homd_HMT_714 GCA_015261915.1 HMT-714 JCVI_13_bin.11 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_13_bin.11 75 2689706 yes 36.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/915/GCA_015261915.1_ASM1526191v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570925 ASM1526191v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.880 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 19.4x 98.48 94.86 0 94.21 0.29 GCF_015261915.1 JABZTS01 2189 2232 2232 7 0 35 1 Prevotella_pallens_homd_HMT_714 GCA_015261925.1 HMT-714 JCVI_17_bin.7 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_17_bin.7 70 2646254 yes 37.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/925/GCA_015261925.1_ASM1526192v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570928 ASM1526192v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.923 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 24.3x 98.44 97.9 0 95.88 0.18 GCF_015261925.1 JABZTV01 2146 2188 2188 8 0 33 1 Prevotella_pallens_homd_HMT_714 GCA_015261945.1 HMT-714 JCVI_14_bin.8 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_14_bin.8 113 2683598 yes 37.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/945/GCA_015261945.1_ASM1526194v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570926 ASM1526194v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.893 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.9x 98.07 98.65 0 98.52 0.72 GCF_015261945.1 JABZTT01 2178 2232 2232 10 2 41 1 Prevotella_pallens_homd_HMT_714 GCA_015261995.1 HMT-714 JCVI_12_bin.15 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_12_bin.15 85 2813865 yes 37.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/995/GCA_015261995.1_ASM1526199v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570924 ASM1526199v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.863 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 22.1x 98.3 99.66 0 99.93 0.62 GCF_015261995.1 JABZTR01 2275 2326 2326 9 0 41 1 Prevotella_pallens_homd_HMT_714 GCA_015262005.1 HMT-714 JCVI_10_bin.10 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_10_bin.10 77 2602635 yes 36.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/005/GCA_015262005.1_ASM1526200v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570922 ASM1526200v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.833 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 14.3x 98.37 97.92 0 96.11 0.29 GCF_015262005.1 JABZTP01 2093 2143 2143 8 1 40 1 Prevotella_pallens_homd_HMT_714 GCA_015262065.1 HMT-714 JCVI_11_bin.16 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens JCVI_11_bin.16 93 2640930 yes 37.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/065/GCA_015262065.1_ASM1526206v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJNA624185 60133 SAMN14570923 ASM1526206v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.850 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 12.5x 98.45 95.95 0.11 97.86 0.95 GCF_015262065.1 JABZTQ01 2114 2158 2158 7 1 35 1 Prevotella_pallens_homd_HMT_714 GCA_015262115.1 HMT-693 JCVI_32_bin.50 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens JCVI_32_bin.50 237 2813428 yes 43.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/115/GCA_015262115.1_ASM1526211v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA624185 28133 SAMN14570919 ASM1526211v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.790 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.5x 98.14 92.69 0.93 88.59 1.83 GCF_015262115.1 JABZTM01 2460 2479 2479 5 0 13 1 Prevotella_nigrescens_homd_HMT_693 GCA_015262135.1 HMT-299 JCVI_44_bin.6 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis JCVI_44_bin.6 239 2302548 yes 38.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/135/GCA_015262135.1_ASM1526213v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA624185 425941 SAMN14570915 ASM1526213v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.730 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.6x 97.01 93.17 1.25 88.43 0.27 GCF_015262135.1 JABZTI01 1707 1746 1746 6 0 32 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_015262145.1 HMT-299 JCVI_49_bin.8 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis JCVI_49_bin.8 95 2259893 yes 38.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/145/GCA_015262145.1_ASM1526214v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA624185 425941 SAMN14570916 ASM1526214v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.743 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.3x 96.74 96.48 0.43 91.28 1.54 GCF_015262145.1 JABZTJ01 1715 1748 1748 4 0 29 0 Hoylesella_nanceiensis_homd_HMT_299 GCA_015262195.1 HMT-299 JCVI_41_bin.4 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis JCVI_41_bin.4 50 2368848 yes 38.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/195/GCA_015262195.1_ASM1526219v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA624185 425941 SAMN14570914 ASM1526219v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.713 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.6x 97.11 97.97 0.34 99.91 0.03 GCF_015262195.1 JABZTH01 1852 1893 1893 5 0 35 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_015262225.1 HMT-299 JCVI_38_bin.6 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis JCVI_38_bin.6 113 2464974 yes 38.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/225/GCA_015262225.1_ASM1526222v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA624185 425941 SAMN14570912 ASM1526222v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.683 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.4x 96.93 97.62 0.73 99.21 0.4 GCF_015262225.1 JABZTF01 1894 1934 1934 5 0 34 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_015262265.1 HMT-299 JCVI_32_bin.47 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis JCVI_32_bin.47 160 2275608 yes 38.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/265/GCA_015262265.1_ASM1526226v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA624185 425941 SAMN14570910 ASM1526226v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.653 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 15.8x 96.7 96.55 0.45 93.57 1.46 GCF_015262265.1 JABZTD01 1738 1770 1770 5 0 27 0 Hoylesella_nanceiensis_homd_HMT_299 GCA_015262295.1 HMT-299 JCVI_19_bin.2 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis JCVI_19_bin.2 49 2494468 yes 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/295/GCA_015262295.1_ASM1526229v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA624185 425941 SAMN14570909 ASM1526229v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.640 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.9x 96.69 99.32 0.34 99.98 0.07 GCF_015262295.1 JABZTC01 1963 1996 1996 5 0 27 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_015262355.1 HMT-298 JCVI_9_bin.7 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola JCVI_9_bin.7 142 2832231 yes 40.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/355/GCA_015262355.1_ASM1526235v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA624185 470565 SAMN14570905 ASM1526235v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.580 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 1.1x 98 95.95 2.26 94.7 2.78 GCF_015262355.1 JABZSY01 2277 2329 2329 8 3 40 1 Prevotella_histicola_homd_HMT_298 GCA_015262365.1 HMT-469 JCVI_41_bin.15 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica JCVI_41_bin.15 211 2790165 yes 40.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/365/GCA_015262365.1_ASM1526236v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA624185 28132 SAMN14570906 ASM1526236v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.593 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.8x 96.83 97.18 0.79 92.58 1.31 JABZSZ01 2144 2197 2197 9 1 42 1 Prevotella_melaninogenica_homd_HMT_469 GCA_015262395.1 HMT-298 JCVI_7_bin.12 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola JCVI_7_bin.12 96 2811180 yes 41.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/395/GCA_015262395.1_ASM1526239v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA624185 470565 SAMN14570904 ASM1526239v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.566 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 10.7x 97.83 98.56 0.12 99.11 1.53 GCF_015262395.1 JABZSX01 2239 2289 2289 10 1 38 1 Prevotella_histicola_homd_HMT_298 GCA_015262435.1 HMT-298 JCVI_43_bin.10 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola JCVI_43_bin.10 104 2921805 yes 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/435/GCA_015262435.1_ASM1526243v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA624185 470565 SAMN14570902 ASM1526243v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.536 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 15.0x 97.95 97.36 0 95.04 0 GCF_015262435.1 JABZSV01 2382 2432 2432 7 1 41 1 Prevotella_histicola_homd_HMT_298 GCA_015262445.1 HMT-298 JCVI_37_bin.5 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola JCVI_37_bin.5 85 2551002 yes 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/445/GCA_015262445.1_ASM1526244v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA624185 470565 SAMN14570900 ASM1526244v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.506 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 77.1x 98.03 94.02 0.19 90.76 0.04 GCF_015262445.1 JABZST01 2020 2067 2067 6 1 39 1 Prevotella_histicola_homd_HMT_298 GCA_015262505.1 HMT-298 JCVI_31A_bin.21 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola JCVI_31A_bin.21 95 2645149 yes 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/505/GCA_015262505.1_ASM1526250v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA624185 470565 SAMN14570898 ASM1526250v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.476 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 52.2x 97.83 88.01 1.87 89.21 2.78 JABZSR01 2116 2163 2163 7 0 39 1 Prevotella_histicola_homd_HMT_298 GCA_015262545.1 HMT-298 JCVI_23_bin.9 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola JCVI_23_bin.9 51 3063233 yes 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/545/GCA_015262545.1_ASM1526254v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA624185 470565 SAMN14570895 ASM1526254v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.433 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.3x 97.76 99.32 0.11 99.99 0 GCF_015262545.1 JABZSO01 2494 2546 2546 8 0 43 1 Prevotella_histicola_homd_HMT_298 GCA_015262605.1 HMT-943 JCVI_44_bin.5 Named Cultivated Oral (Abundance: Medium) HMT-943 Prevotella aurantiaca JCVI_44_bin.5 99 2616361 yes 38.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/605/GCA_015262605.1_ASM1526260v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella aurantiaca PRJNA624185 596085 SAMN14570890 ASM1526260v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.346 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 103.3x 98.38 98.95 0 99.97 0.03 GCF_015262605.1 JABZSJ01 2144 2194 2194 8 0 41 1 Prevotella_aurantiaca_homd_HMT_943 GCA_015262625.1 HMT-298 JCVI_10_bin.9 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola JCVI_10_bin.9 103 3116790 yes 41.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/625/GCA_015262625.1_ASM1526262v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA624185 470565 SAMN14570892 ASM1526262v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.390 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 23.2x 97.82 98.93 0.11 99.96 0.13 GCF_015262625.1 JABZSL01 2526 2580 2580 10 7 36 1 Prevotella_histicola_homd_HMT_298 GCA_015262675.1 HMT-291 JCVI_32_bin.7 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola JCVI_32_bin.7 91 2723297 yes 50.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/675/GCA_015262675.1_ASM1526267v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA624185 28129 SAMN14570891 ASM1526267v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.373 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 91.4x 98.25 97.69 0 93.04 0.16 GCF_015262675.1 JABZSK01 2186 2216 2216 9 0 21 0 Prevotella_denticola_homd_HMT_291 GCA_015262695.1 HMT-943 JCVI_34_bin.10 Named Cultivated Oral (Abundance: Medium) HMT-943 Prevotella aurantiaca JCVI_34_bin.10 116 2248055 yes 38.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/695/GCA_015262695.1_ASM1526269v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella aurantiaca PRJNA624185 596085 SAMN14570889 ASM1526269v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.333 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 6.3x 98.51 92.27 0 88.2 0.13 GCF_015262695.1 JABZSI01 1827 1861 1861 4 0 29 1 Prevotella_aurantiaca_homd_HMT_943 GCA_015262735.1 HMT-279 JCVI_1_bin.6 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_1_bin.6 64 2204561 yes 55.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/735/GCA_015262735.1_ASM1526273v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 1924944 SAMN14570886 ASM1526273v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.286 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.2x 98.87 0.08 99.88 0.13 GCF_015262735.1 JABZSF01 1698 1754 1754 7 2 46 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015262745.1 HMT-279 JCVI_12_bin.11 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_12_bin.11 261 1883333 yes 56.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/745/GCA_015262745.1_ASM1526274v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 1924944 SAMN14570885 ASM1526274v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.266 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 41.3x 93.54 0.42 86.34 0.22 GCF_015262745.1 JABZSE01 1478 1524 1524 8 0 38 0 Porphyromonas_pasteri_homd_HMT_279 GCA_015262805.1 HMT-279 JCVI_36_bin.1 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_36_bin.1 177 2118753 yes 56.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/805/GCA_015262805.1_ASM1526280v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 1924944 SAMN14570883 ASM1526280v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.240 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 13.4x 98.01 0.43 99.65 0.74 GCF_015262805.1 JABZSC01 1626 1691 1691 7 2 55 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015262835.1 HMT-279 JCVI_26_bin.3 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_26_bin.3 198 2096433 yes 56.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/835/GCA_015262835.1_ASM1526283v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 1924944 SAMN14570882 ASM1526283v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.223 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.3x 97.46 0.1 99.81 0.43 GCF_015262835.1 JABZSB01 1627 1678 1678 7 2 41 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015262895.1 HMT-279 JCVI_4_bin.4 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_4_bin.4 246 2156524 yes 56.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/895/GCA_015262895.1_ASM1526289v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 2049046 SAMN14570879 ASM1526289v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.176 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 6.6x 96.59 4.06 99.31 0.99 JABZRY01 1676 1729 1729 9 2 41 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015262915.1 HMT-279 JCVI_41_bin.6 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_41_bin.6 97 2367683 yes 55.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/915/GCA_015262915.1_ASM1526291v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 2049046 SAMN14570876 ASM1526291v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.130 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 12.2x 98.87 1.02 99.95 1.55 JABZRV01 1843 1910 1910 7 10 49 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015262925.1 HMT-279 JCVI_49_bin.7 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_49_bin.7 110 2078823 yes 56.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/925/GCA_015262925.1_ASM1526292v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 2049046 SAMN14570878 ASM1526292v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:07.163 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.7x 97.3 0 98.48 0.04 JABZRX01 1593 1643 1643 7 0 42 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015262975.1 HMT-279 JCVI_38_bin.12 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_38_bin.12 173 2253703 yes 55.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/975/GCA_015262975.1_ASM1526297v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 2049046 SAMN14570875 ASM1526297v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.116 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 13.9x 98.03 0.16 99.86 0.38 JABZRU01 1751 1806 1806 7 1 46 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015263015.1 HMT-279 JCVI_28_bin.3 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_28_bin.3 237 2104903 yes 56.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/015/GCA_015263015.1_ASM1526301v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 2049046 SAMN14570871 ASM1526301v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.053 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 6.0x 95.32 0.31 92.51 0.41 JABZRQ01 1670 1721 1721 8 2 40 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015263045.1 HMT-279 JCVI_37_bin.10 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_37_bin.10 81 2280067 yes 55.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/045/GCA_015263045.1_ASM1526304v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 2049046 SAMN14570874 ASM1526304v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.100 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 7.2x 98.87 0.39 99.81 0.35 JABZRT01 1780 1845 1845 8 8 48 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015263095.1 HMT-279 JCVI_18_bin.8 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_18_bin.8 255 2047933 yes 55.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/095/GCA_015263095.1_ASM1526309v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 2049046 SAMN14570867 ASM1526309v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.993 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.4x 94.47 0.06 90.56 0.2 JABZRM01 1618 1673 1673 7 2 45 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015263105.1 HMT-279 JCVI_17_bin.5 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_17_bin.5 280 2161392 yes 55.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/105/GCA_015263105.1_ASM1526310v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 2049046 SAMN14570866 ASM1526310v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:06.976 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.0x 97.14 0.31 94.11 0.46 JABZRL01 1701 1748 1748 7 0 39 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015263125.1 HMT-279 JCVI_22A_bin.8 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_22A_bin.8 156 2200403 yes 55.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/125/GCA_015263125.1_ASM1526312v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 2049046 SAMN14570869 ASM1526312v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:07.023 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.8x 98.64 0.44 99.92 1.47 JABZRO01 1722 1780 1780 8 1 48 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015263205.1 HMT-110 JCVI_32_bin.37 Unnamed Cultivated Oral (Abundance: Medium) HMT-110 Parvimonas sp. HMT-110 JCVI_32_bin.37 111 1193945 yes 27.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/205/GCA_015263205.1_ASM1526320v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas sp000214475 PRJNA624185 1944660 SAMN14570862 ASM1526320v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:06.910 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.4x 69.89 2.44 75.26 3.01 JABZRH01 1118 1147 1147 19 1 9 0 Parvimonas_sp_HMT_110_homd_HMT_110 GCA_015263215.1 HMT-279 JCVI_11_bin.14 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri JCVI_11_bin.14 77 2174557 yes 55.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/215/GCA_015263215.1_ASM1526321v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJNA624185 2049046 SAMN14570863 ASM1526321v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.926 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 8.0x 98.87 0.86 99.73 0.5 JABZRI01 1666 1729 1729 8 3 51 1 Porphyromonas_pasteri_homd_HMT_279 GCA_015263255.1 HMT-110 JCVI_24_bin.16 Unnamed Cultivated Oral (Abundance: Medium) HMT-110 Parvimonas sp. HMT-110 JCVI_24_bin.16 85 1555998 yes 28.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/255/GCA_015263255.1_ASM1526325v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas sp000214475 PRJNA624185 1944660 SAMN14570861 ASM1526325v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.896 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 12.4x 95.41 1.26 96.62 3.54 GCF_015263255.1 JABZRG01 1459 1541 1541 27 5 49 1 Parvimonas_sp_HMT_110_homd_HMT_110 GCA_015263295.1 HMT-111 JCVI_23_bin.11 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra JCVI_23_bin.11 70 1774636 yes 28.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/295/GCA_015263295.1_ASM1526329v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA624185 33033 SAMN14570859 ASM1526329v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:06.866 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.4x 97.69 96.95 2.12 99.81 1.8 GCF_015263295.1 JABZRE01 1635 1709 1709 31 0 41 2 Parvimonas_micra_homd_HMT_111 GCA_015263305.1 HMT-457 JCVI_38_bin.19 Named Cultivated Oral (Abundance: High) HMT-457 Oribacterium sinus JCVI_38_bin.19 269 2217649 yes 43.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/305/GCA_015263305.1_ASM1526330v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium sinus_B PRJNA624185 237576 SAMN14570855 ASM1526330v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.803 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.9x 94.85 93.67 1 85.85 0.53 GCF_015263305.1 JABZRA01 1855 1914 1914 17 1 41 0 Oribacterium_sinus_homd_HMT_457 GCA_015263375.1 HMT-101 JCVI_39_bin.16 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava JCVI_39_bin.16 69 2148734 yes 49.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/375/GCA_015263375.1_ASM1526337v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava_A PRJNA624185 192066 SAMN14570852 ASM1526337v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.760 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 12.9x 97.53 0.34 99.83 0.04 GCF_015263375.1 JABZQX01 2066 2133 2133 20 0 46 1 Neisseria_perflava_homd_HMT_101 GCA_015263395.1 HMT-476 JCVI_22A_bin.7 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava JCVI_22A_bin.7 123 2097332 yes 49.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/395/GCA_015263395.1_ASM1526339v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA624185 192066 SAMN14570853 ASM1526339v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.773 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.6x 98.8 0.38 99.92 1.05 GCF_015263395.1 JABZQY01 1997 2066 2066 20 0 48 1 Neisseria_subflava_homd_HMT_476 GCA_015263535.1 HMT-609 JCVI_32_bin.62 Named Cultivated Oral (Abundance: Medium) HMT-609 Neisseria flava JCVI_32_bin.62 198 2189526 yes 51.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/535/GCA_015263535.1_ASM1526353v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flava PRJNA624185 490 SAMN14570845 ASM1526353v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.653 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 9.3x 94.48 89.08 2.27 87.21 1.94 JABZQQ01 2049 2126 2126 25 0 51 1 Neisseria_flava_homd_HMT_609 GCA_015263545.1 HMT-101 JCVI_46_bin.6 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava JCVI_46_bin.6 28 2217615 yes 49.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/545/GCA_015263545.1_ASM1526354v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava_A PRJNA624185 487 SAMN14570844 ASM1526354v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.636 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.8x 88.12 99.7 0.34 100 0.51 JABZQP01 2050 2116 2116 17 3 45 1 Neisseria_perflava_homd_HMT_101 GCA_015263565.1 HMT-476 JCVI_32_bin.25 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava JCVI_32_bin.25 85 2020883 yes 49.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/565/GCA_015263565.1_ASM1526356v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA624185 486 SAMN14570842 ASM1526356v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:06.606 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 16.9x 87.93 94.32 0.9 92.25 0.36 JABZQN01 1953 2009 2009 20 0 35 1 Neisseria_subflava_homd_HMT_476 GCA_015263585.1 HMT-476 JCVI_49_bin.18 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava JCVI_49_bin.18 84 2130540 yes 49.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/585/GCA_015263585.1_ASM1526358v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA624185 486 SAMN14570843 ASM1526358v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:06.623 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.2x 87.91 98.59 0.53 99.99 0.64 JABZQO01 2070 2129 2129 19 0 39 1 Neisseria_subflava_homd_HMT_476 GCA_015263615.1 HMT-593 JCVI_47_bin.23 Named Cultivated Oral (Abundance: Medium) HMT-593 Mogibacterium diversum JCVI_47_bin.23 94 1492257 yes 41.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/615/GCA_015263615.1_ASM1526361v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium diversum PRJNA624185 114527 SAMN14570840 ASM1526361v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:06.576 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 6.3x 97.66 91.13 0 85.72 0.57 GCF_015263615.1 JABZQL01 1325 1361 1361 11 0 24 1 Mogibacterium_diversum_homd_HMT_593 GCA_015263645.1 HMT-593 JCVI_8_bin.1 Named Cultivated Oral (Abundance: Medium) HMT-593 Mogibacterium diversum JCVI_8_bin.1 142 1524311 yes 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/645/GCA_015263645.1_ASM1526364v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium diversum PRJNA624185 114527 SAMN14570841 ASM1526364v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.593 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 14.3x 97.33 91.43 1.42 86.54 0.86 JABZQM01 1367 1403 1403 12 2 21 1 Mogibacterium_diversum_homd_HMT_593 GCA_015263665.1 HMT-476 JCVI_41_bin.5 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava JCVI_41_bin.5 205 2041280 yes 49.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/665/GCA_015263665.1_ASM1526366v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA624185 192066 SAMN14570854 ASM1526366v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:06.790 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.9x 92.65 2.54 93.11 1.66 GCF_015263665.1 JABZQZ01 2010 2070 2070 19 0 40 1 Neisseria_subflava_homd_HMT_476 GCA_015263765.1 HMT-593 JCVI_23_bin.10 Named Cultivated Oral (Abundance: Medium) HMT-593 Mogibacterium diversum JCVI_23_bin.10 81 1535808 yes 41.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/765/GCA_015263765.1_ASM1526376v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium diversum PRJNA624185 114527 SAMN14570835 ASM1526376v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.500 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.1x 97.48 97.16 0.07 92.89 1.26 GCF_015263765.1 JABZQG01 1372 1408 1408 10 1 24 1 Mogibacterium_diversum_homd_HMT_593 GCA_015263815.1 HMT-593 JCVI_12_bin.13 Named Cultivated Oral (Abundance: Medium) HMT-593 Mogibacterium diversum JCVI_12_bin.13 78 1626275 yes 41.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/815/GCA_015263815.1_ASM1526381v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium diversum PRJNA624185 114527 SAMN14570832 ASM1526381v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.456 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 6.1x 97.47 95.04 4.96 87.61 4.11 GCF_015263815.1 JABZQD01 1465 1503 1503 11 1 25 1 Mogibacterium_diversum_homd_HMT_593 GCA_015263935.1 HMT-122 JCVI_43_bin.7 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis JCVI_43_bin.7 182 1557149 yes 45.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/935/GCA_015263935.1_ASM1526393v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJNA624185 187326 SAMN14570826 ASM1526393v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.366 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 2.8x 97.06 0.19 86.83 0.6 JABZPX01 1456 1531 1531 28 1 45 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_015263965.1 HMT-122 JCVI_40_bin.9 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis JCVI_40_bin.9 195 1535703 yes 45.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/965/GCA_015263965.1_ASM1526396v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJNA624185 187326 SAMN14570825 ASM1526396v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:06.350 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.1x 92.93 0.02 86.46 0.45 JABZPW01 1445 1504 1504 26 0 33 0 Megasphaera_micronuciformis_homd_HMT_122 GCA_015263995.1 HMT-122 JCVI_38_bin.8 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis JCVI_38_bin.8 158 1613244 yes 45.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/995/GCA_015263995.1_ASM1526399v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJNA624185 187326 SAMN14570823 ASM1526399v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:06.320 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 4.2x 97.9 1.02 86.44 0.28 JABZPU01 1520 1593 1593 27 0 45 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_015264035.1 HMT-122 JCVI_32_bin.5 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis JCVI_32_bin.5 106 1515867 yes 45.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/264/035/GCA_015264035.1_ASM1526403v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJNA624185 187326 SAMN14570821 ASM1526403v1 Contig SPAdes v. 3.11.1 2020-04-09T20:41:06.283 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.0x 98.33 0 85.05 0.06 JABZPS01 1413 1487 1487 28 0 45 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_015264065.1 HMT-122 JCVI_23_bin.31 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis JCVI_23_bin.31 127 1617894 yes 45.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/264/065/GCA_015264065.1_ASM1526406v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJNA624185 187326 SAMN14570818 ASM1526406v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:06.236 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 5.4x 98.68 0.75 96.01 1.9 JABZPP01 1521 1584 1584 28 1 34 0 Megasphaera_micronuciformis_homd_HMT_122 GCA_015264395.1 HMT-158 JCVI_44_bin.18 Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae JCVI_44_bin.18 203 1957555 yes 39.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/264/395/GCA_015264395.1_ASM1526439v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJNA624185 1926307 SAMN14571087 ASM1526439v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:10.923 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 27.4x 92.24 3.92 94.72 3.2 JABZZY01 1793 1844 1844 21 2 27 1 Veillonella_rogosae_homd_HMT_158 GCA_015264435.1 HMT-158 JCVI_39_bin.2 Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae JCVI_39_bin.2 202 1852593 yes 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/264/435/GCA_015264435.1_ASM1526443v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJNA624185 1926307 SAMN14571085 ASM1526443v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:10.776 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 12.1x 94.92 1.55 88.48 3.34 GCF_015264435.1 JABZZW01 1617 1661 1661 18 0 25 1 Veillonella_rogosae_homd_HMT_158 GCA_015264545.1 HMT-524 JCVI_43_bin.2 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica JCVI_43_bin.2 216 1913654 yes 39.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/264/545/GCA_015264545.1_ASM1526454v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA624185 1926307 SAMN14571080 ASM1526454v1 Scaffold SPAdes v. 3.11.1 2020-04-09T20:41:10.656 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 27.6x 96.17 2.15 93.32 3.18 JABZZR01 1699 1754 1754 20 1 33 1 Veillonella_atypica_homd_HMT_524 GCA_015273425.1 HMT-076 R5991 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri R5991 15 2490175 32.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/273/425/GCA_015273425.1_ASM1527342v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA649052 1292 SAMN15665292 ASM1527342v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:06.477 Australia: Brisbane skin swab1574 from squamous cell carcinomas patient MST020 Illumina NextSeq University of Queensland 40.0x 99.62 99.73 0 100 0.05 GCF_015273425.1 JACGRB01 2410 2523 2523 50 5 57 1 Staphylococcus_warneri_homd_HMT_076 GCA_015273445.1 HMT-076 R5992 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri R5992 24 2529376 32.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/273/445/GCA_015273445.1_ASM1527344v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA649052 1292 SAMN15665293 ASM1527344v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:06.493 Australia: Brisbane skin swab1574 from squamous cell carcinomas patient MST020 Illumina NextSeq University of Queensland 40.0x 99.62 99.73 0 100 0.06 GCF_015273445.1 JACGRC01 2461 2572 2572 50 5 55 1 Staphylococcus_warneri_homd_HMT_076 GCA_015273475.1 HMT-076 R5990 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri R5990 19 2500591 32.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/273/475/GCA_015273475.1_ASM1527347v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA649052 1292 SAMN15665291 ASM1527347v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:06.460 Australia: Brisbane skin swab1574 from squamous cell carcinomas patient MST020 Illumina NextSeq University of Queensland 40.0x 99.61 99.73 0 100 0.05 GCF_015273475.1 JACGRA01 2422 2534 2534 49 5 57 1 Staphylococcus_warneri_homd_HMT_076 GCA_015273915.1 HMT-116 R6013 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis R6013 24 2550134 32.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/273/915/GCA_015273915.1_ASM1527391v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA649052 29388 SAMN15665268 ASM1527391v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:06.013 Australia: Brisbane skin swab1482 from squamous cell carcinomas patient MST013 Illumina NextSeq University of Queensland 40.0x 98.79 99.25 0.45 99.99 0.78 GCF_015273915.1 JACGQF01 2435 2553 2553 50 9 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_015273975.1 HMT-116 R6012 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis R6012 23 2559829 32.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/273/975/GCA_015273975.1_ASM1527397v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA649052 29388 SAMN15665267 ASM1527397v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.997 Australia: Brisbane skin swab1482 from squamous cell carcinomas patient MST013 Illumina NextSeq University of Queensland 40.0x 98.78 99.25 0.45 99.99 0.78 GCF_015273975.1 JACGQE01 2443 2560 2560 50 8 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_015273985.1 HMT-116 R5945 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis R5945 33 2626696 32.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/273/985/GCA_015273985.1_ASM1527398v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA649052 29388 SAMN15665264 ASM1527398v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.947 Australia: Brisbane skin swab1472 from squamous cell carcinomas patient MST012 Illumina NextSeq University of Queensland 40.0x 98.97 99.73 0.36 100 0.18 GCF_015273985.1 JACGQB01 2509 2624 2624 47 9 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_015273995.1 HMT-116 R5946 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis R5946 31 2620428 32.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/273/995/GCA_015273995.1_ASM1527399v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA649052 29388 SAMN15665265 ASM1527399v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.963 Australia: Brisbane skin swab1472 from squamous cell carcinomas patient MST012 Illumina NextSeq University of Queensland 40.0x 98.97 99.73 0.36 100 0.17 GCF_015273995.1 JACGQC01 2502 2618 2618 48 9 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_015274025.1 HMT-116 R5944 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis R5944 32 2620474 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/274/025/GCA_015274025.1_ASM1527402v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA649052 29388 SAMN15665263 ASM1527402v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.930 Australia: Brisbane skin swab1472 from squamous cell carcinomas patient MST012 Illumina NextSeq University of Queensland 40.0x 98.97 99.73 0.36 100 0.17 GCF_015274025.1 JACGQA01 2503 2618 2618 48 8 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_015274055.1 HMT-116 R5943 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis R5943 36 2618481 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/274/055/GCA_015274055.1_ASM1527405v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA649052 29388 SAMN15665262 ASM1527405v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.910 Australia: Brisbane skin swab1472 from squamous cell carcinomas patient MST012 Illumina NextSeq University of Queensland 40.0x 98.97 99.73 0.36 100 0.17 GCF_015274055.1 JACGPZ01 2505 2618 2618 48 7 57 1 Staphylococcus_capitis_homd_HMT_116 GCA_015274065.1 HMT-076 R6028 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri R6028 24 2556053 32.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/274/065/GCA_015274065.1_ASM1527406v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA649052 1292 SAMN15665260 ASM1527406v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.873 Australia: Brisbane skin swab1470 from squamous cell carcinomas patient MST012 Illumina NextSeq University of Queensland 40.0x 99.63 99.59 0.1 100 0.1 GCF_015274065.1 JACGPX01 2479 2592 2592 53 5 54 1 Staphylococcus_warneri_homd_HMT_076 GCA_015274095.1 HMT-116 R5942 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis R5942 31 2624874 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/274/095/GCA_015274095.1_ASM1527409v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA649052 29388 SAMN15665261 ASM1527409v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.893 Australia: Brisbane skin swab1472 from squamous cell carcinomas patient MST012 Illumina NextSeq University of Queensland 40.0x 98.97 99.73 0.36 100 0.17 GCF_015274095.1 JACGPY01 2509 2623 2623 48 7 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_015274105.1 HMT-076 R6027 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri R6027 25 2576096 32.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/274/105/GCA_015274105.1_ASM1527410v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA649052 1292 SAMN15665259 ASM1527410v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.853 Australia: Brisbane skin swab1470 from squamous cell carcinomas patient MST012 Illumina NextSeq University of Queensland 40.0x 99.62 99.73 0.16 100 0.25 GCF_015274105.1 JACGPW01 2498 2610 2610 54 5 52 1 Staphylococcus_warneri_homd_HMT_076 GCA_015274115.1 HMT-116 R6026 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis R6026 21 2515456 32.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/274/115/GCA_015274115.1_ASM1527411v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA649052 29388 SAMN15665258 ASM1527411v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.837 Australia: Brisbane skin swab1470 from squamous cell carcinomas patient MST012 Illumina NextSeq University of Queensland 40.0x 98.92 99.81 0.36 100 0.12 GCF_015274115.1 JACGPV01 2387 2506 2506 50 9 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_015274175.1 HMT-076 R6024 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri R6024 24 2569567 32.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/274/175/GCA_015274175.1_ASM1527417v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA649052 1292 SAMN15665256 ASM1527417v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.800 Australia: Brisbane skin swab1470 from squamous cell carcinomas patient MST012 Illumina NextSeq University of Queensland 40.0x 99.64 99.73 0.16 100 0.25 GCF_015274175.1 JACGPT01 2494 2594 2594 54 5 40 1 Staphylococcus_warneri_homd_HMT_076 GCA_015274185.1 HMT-116 R6023 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis R6023 22 2515849 32.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/274/185/GCA_015274185.1_ASM1527418v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA649052 29388 SAMN15665255 ASM1527418v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.780 Australia: Brisbane skin swab1470 from squamous cell carcinomas patient MST012 Illumina NextSeq University of Queensland 40.0x 98.92 99.81 0.36 100 0.12 GCF_015274185.1 JACGPS01 2386 2505 2505 50 9 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_015274675.1 HMT-127 R6016 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis R6016 34 2244822 31.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/274/675/GCA_015274675.1_ASM1527467v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA649052 1290 SAMN15665231 ASM1527467v1 Contig SPAdes v. 3.14.0 2020-07-29T03:02:05.293 Australia: Brisbane skin swab1381 from squamous cell carcinomas patient MST003 Illumina NextSeq University of Queensland 40.0x 99.18 99.38 0.57 100 0.03 GCF_015274675.1 JACGOU01 2192 2311 2311 54 6 58 1 Staphylococcus_hominis_homd_HMT_127 GCA_015291305.1 HMT-597 CCBAU 21365 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-597 Bradyrhizobium elkanii CCBAU 21365 1 9482549 63.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/291/305/GCA_015291305.1_ASM1529130v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii PRJNA279921 1325083 SAMN03459156 ASM1529130v1 Complete Genome FALCON v. v0.3.0 2015-04-03T08:00:28.000 China: Jiangsu nodule PacBio China Agricultural University 100.0x 100 0.52 100 4.27 GCF_015291305.1 8940 9056 9056 58 3 54 1 Bradyrhizobium_elkanii_homd_HMT_597 GCA_015291885.1 HMT-477 ATCC 14405 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-477 Stutzerimonas stutzeri ATCC 14405 1 4639098 61.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/291/885/GCA_015291885.1_ASM1529188v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;s__Stutzerimonas stutzeri_AC PRJNA522963 316 SAMN10961665 ASM1529188v1 Complete Genome Flye v. 2.4 2019-02-18T07:38:05.226 missing marine sediments PacBio RS; Illumina MiSeq Max Planck Institute for Biophysik 78.0x 86.91 100 0.14 100 0.22 GCF_015291885.1 4262 4394 4394 57 12 62 1 Stutzerimonas_stutzeri_homd_HMT_477 GCA_015326085.1 HMT-233 ssch2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-233 Staphylococcus schleiferi ssch2 1 2508082 36.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/326/085/GCA_015326085.1_ASM1532608v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus schleiferi PRJNA674009 150056 SAMN16632877 ASM1532608v1 Complete Genome Unicycler v. 0.4.7 2020-11-03T06:10:04.753 Italy:Milano,Istituto Ortopedi Oxford Nanopore; Illumina University of Siena 800.0x 85.23 99.43 0.28 100 0 GCF_015326085.1 2303 2499 2499 114 22 59 1 Staphylococcus_schleiferi_homd_HMT_233 GCA_015326295.1 HMT-544 PBO Named Cultivated Pathogen (Abundance: Scarce) HMT-544 Brucella anthropi PBO 3 4858647 56.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/326/295/GCA_015326295.1_ASM1532629v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Brucella;s__Brucella anthropi PRJNA673670 529 SAMN16619790 ASM1532629v1 Complete Genome Unicycler v. V2.0 and V3.0 2020-11-01T07:35:04.710 China: Qingdao plastics debris from sea coast Illumina PE150 The Institute of Oceanology, Chinese Academy of Sciences 2.3x 97.51 100 0 100 0.44 GCF_015326295.1 4573 4696 4696 51 12 59 1 Brucella_anthropi_homd_HMT_544 GCA_015326545.1 HMT-233 ssch3 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-233 Staphylococcus schleiferi ssch3 1 2508018 36.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/326/545/GCA_015326545.1_ASM1532654v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus schleiferi PRJNA674010 150056 SAMN16632878 ASM1532654v1 Complete Genome Unicycler v. 0.4.7 2020-11-03T06:21:04.560 Italy:Milano,Istituto Ortopedi Oxford Nanopore; Illumina University of Siena 980.0x 85.23 99.43 0.28 100 0 GCF_015326545.1 2302 2498 2498 114 22 59 1 Staphylococcus_schleiferi_homd_HMT_233 GCA_015327065.1 HMT-374 JZ28 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-374 Cellulosimicrobium funkei JZ28 1 4378193 74.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/327/065/GCA_015327065.1_ASM1532706v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium;s__Cellulosimicrobium funkei PRJNA345401 1906273 SAMN05828175 ASM1532706v1 Complete Genome SMRT ANALYSIS v. 2.3.0 2016-09-27T02:50:06.910 Saudi Arabia: Jizan PacBio King Abdullah University of Science and Technology 201.0x 99.71 0.67 100 0 GCF_015327065.1 3887 3980 3980 27 9 56 1 Cellulosimicrobium_funkei_homd_HMT_374 GCA_015336085.1 HMT-827 C-781 Named Cultivated Pathogen (Abundance: Scarce) HMT-827 Yersinia pestis C-781 1 4604910 47.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/336/085/GCA_015336085.1_ASM1533608v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;s__Yersinia pestis PRJNA673664 632 SAMN16619712 ASM1533608v1 Complete Genome Trycycler v. 0.3.3; Flye v. 2.8.1; Miniasm v. 0.3 (r179); Raven v. 1.1.10; Medaka v. 1.0.3; Pilon v. 2020-11-01T05:58:06.443 Russia missing Oxford Nanopore MinION; IonTorrent RARI 89.0x 99.94 99.75 0 100 0.15 GCF_015336085.1 4028 4365 4365 240 22 74 1 Yersinia_pestis_homd_HMT_827 GCA_015354135.1 HMT-750 JCVI_32_bin.21 Named Cultivated Oral (Abundance: Medium) HMT-750 Lancefieldella rimae JCVI_32_bin.21 34 1581027 yes 49.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/354/135/GCA_015354135.1_ASM1535413v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__Lancefieldella rimae PRJNA624185 1383 SAMN14570586 ASM1535413v1 Contig SPAdes v. 3.11.1 2020-04-09T20:00:06.346 USA: UCLA School of Dentistry saliva Illumina NextSeq J. Craig Venter Institute 3.1x 97.15 93.73 0 93.87 0.21 GCF_015354135.1 JABZGV01 1396 1440 1440 7 1 36 0 Lancefieldella_rimae_homd_HMT_750 GCA_015377505.1 HMT-895 TK-J6A Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-895 Bifidobacterium animalis TK-J6A 1 1944283 60.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/377/505/GCA_015377505.1_ASM1537750v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis PRJNA579198 28025 SAMN13106276 ASM1537750v1 Complete Genome Unicycler v. v0.4.5 2019-10-23T22:06:04.400 China:Zhejiang province probitic products Oxford Nanopore GridION; Illumina HiSeq Zhejiang Tianke High Technology Development Co.Ltd. 100.0x 99.99 100 0 99.9 0.25 GCF_015377505.1 1564 1639 1639 9 12 53 1 Bifidobacterium_animalis_homd_HMT_895 GCA_015476095.1 HMT-568 MGB0470 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-568 Lacticaseibacillus casei MGB0470 1 2940907 47.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/476/095/GCA_015476095.1_ASM1547609v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus casei PRJNA674460 1582 SAMN16657552 ASM1547609v1 Complete Genome PacBio SMRT Analysis v. 2.3.0 2020-11-04T03:15:27.590 South Korea kimchi PacBio RS II World Institute of Kimchi 122.0x 99.99 97.74 0.36 99.99 0.34 GCF_015476095.1 2891 2995 2995 29 15 59 1 Lacticaseibacillus_casei_homd_HMT_568 GCA_015476235.1 HMT-024 DSM 15344 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-024 Schlegelella thermodepolymerans DSM 15344 1 3858501 70.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/476/235/GCA_015476235.1_ASM1547623v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Caldimonas;s__Caldimonas thermodepolymerans PRJNA674774 215580 SAMN16675030 ASM1547623v1 Complete Genome Flye v. 2.8.1; Racon v. 1.4.13; Medaka v. 1.2.0; Pilon v. 1.23 2020-11-05T08:39:07.956 Czech Republic cultured in Erlenmeyer flask Oxford Nanopore MinION; Illumina MiSeq Brno University of Technology 5500.0x 99.99 99.84 0.47 100 0.01 GCF_015476235.1 3593 3673 3673 16 6 57 1 Schlegelella_thermodepolymerans_homd_HMT_024 GCA_015546865.1 HMT-411 1001254J_160919_B12 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 1001254J_160919_B12 19 2193311 41.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/546/865/GCA_015546865.1_ASM1554686v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_X PRJNA637878 1318 SAMN15533206 ASM1554686v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:24.733 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 92.6x 94.35 100 0 100 0 GCF_015546865.1 JADMUA01 2052 2135 2135 37 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_015546995.1 HMT-638 D6t1_180914_B1 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 D6t1_180914_B1 46 1718317 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/546/995/GCA_015546995.1_ASM1554699v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_J PRJNA637878 68892 SAMN15532988 ASM1554699v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:21.356 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 35.4x 93.97 100 0 99.99 0.01 GCF_015546995.1 JADMUH01 1653 1736 0 36 4 42 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_015546995.1 HMT-638 D6t1_180914_B1 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 D6t1_180914_B1 46 1718317 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/546/995/GCA_015546995.1_ASM1554699v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_J PRJNA637878 68892 SAMN15532988 ASM1554699v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:21.356 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 35.4x 93.97 100 0 99.99 0.01 GCF_015546995.1 JADMUH01 1653 1736 0 36 4 42 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_015547025.1 HMT-156 1001216B_150713_A10 Named Cultivated Oral (Abundance: High) HMT-156 Veillonella nakazawae 1001216B_150713_A10 24 2114777 38.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/547/025/GCA_015547025.1_ASM1554702v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella nakazawae PRJNA637878 39778 SAMN15532443 ASM1554702v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:12.203 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 13.6x 93.09 100 0 99.99 0.14 GCF_015547025.1 JADMUI01 1940 2008 2008 18 5 44 1 Veillonella_nakazawae_homd_HMT_156 GCA_015547285.1 HMT-543 BSD2780120874b_170522_B1 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus BSD2780120874b_170522_B1 57 2216880 38.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/547/285/GCA_015547285.1_ASM1554728v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus whileyi PRJNA637878 1328 SAMN15532498 ASM1554728v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:13.146 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 97.9x 99.47 99.65 0.71 99.96 0.45 GCF_015547285.1 JADMUU01 2220 2313 2313 48 3 41 1 Streptococcus_anginosus_homd_HMT_543 GCA_015547645.1 HMT-966 1001713B170131_170501_D7 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-966 Alistipes shahii 1001713B170131_170501_D7 47 3437448 57.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/547/645/GCA_015547645.1_ASM1554764v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii PRJNA637878 328814 SAMN15532555 ASM1554764v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:14.473 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 51.2x 99.05 100 0.48 99.99 1.33 GCF_015547645.1 JADMVN01 2874 2953 2953 25 3 50 1 Alistipes_shahii_homd_HMT_966 GCA_015548525.1 HMT-076 J1101437_171009_F1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri J1101437_171009_F1 28 2569939 32.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/548/525/GCA_015548525.1_ASM1554852v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA637878 1292 SAMN15532389 ASM1554852v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:11.213 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 79.9x 99.63 99.73 0.16 99.99 0.18 GCF_015548525.1 JADMXG01 2479 2599 2599 52 8 59 1 Staphylococcus_warneri_homd_HMT_076 GCA_015548615.1 HMT-798 BSD2780120874b_170522_H2 Named Cultivated Vaginal (Abundance: Medium) HMT-798 Prevotella timonensis BSD2780120874b_170522_H2 260 3469033 42.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/548/615/GCA_015548615.1_ASM1554861v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella timonensis PRJNA637878 386414 SAMN15532956 ASM1554861v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:20.850 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 45.0x 96.39 99.29 0.57 99.99 0.26 GCF_015548615.1 JADMXI01 2991 3070 3070 25 3 50 1 Prevotella_timonensis_homd_HMT_798 GCA_015548685.1 HMT-542 BSD2780120874b_170522_E5 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius BSD2780120874b_170522_E5 43 2077187 35.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/548/685/GCA_015548685.1_ASM1554868v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA637878 1261 SAMN15532383 ASM1554868v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:11.103 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 82.5x 99.12 100 0 100 0.01 GCF_015548685.1 JADMXM01 1845 1930 1930 38 4 42 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_015549455.1 HMT-965 1001287H_170206_F3 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-965 Alistipes putredinis 1001287H_170206_F3 42 3123722 52.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/549/455/GCA_015549455.1_ASM1554945v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis PRJNA637878 28117 SAMN15532518 ASM1554945v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:13.703 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 71.5x 99.1 99.04 1.12 100 0.93 GCF_015549455.1 JADMYY01 2964 3043 3043 28 3 47 1 Alistipes_putredinis_homd_HMT_965 GCA_015549975.1 HMT-161 1001295B_180824_H5 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula 1001295B_180824_H5 9 2060011 38.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/549/975/GCA_015549975.1_ASM1554997v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_D PRJNA637878 29466 SAMN15532465 ASM1554997v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:12.580 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 63.7x 96.37 100 0 100 0.15 GCF_015549975.1 JADMZX01 1836 1909 1909 22 6 44 1 Veillonella_parvula_homd_HMT_161 GCA_015551585.1 HMT-755 D53t1_180928_G12 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius D53t1_180928_G12 24 2211514 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/551/585/GCA_015551585.1_ASM1555158v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA637878 1304 SAMN15532541 ASM1555158v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:14.240 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 27.6x 94.98 99.75 0.58 99.99 0.11 GCF_015551585.1 JADNDA01 2025 2107 2107 34 3 44 1 Streptococcus_salivarius_homd_HMT_755 GCA_015552485.1 HMT-411 1001713B170207_170306_F12 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 1001713B170207_170306_F12 17 2141457 42.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/552/485/GCA_015552485.1_ASM1555248v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA637878 1318 SAMN15533253 ASM1555248v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:25.493 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 84.2x 94 100 0.34 99.98 0.01 GCF_015552485.1 JADNEU01 2029 2110 2110 35 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_015552565.1 HMT-622 D6t1_180914_F1 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii D6t1_180914_F1 79 2181005 40.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/552/565/GCA_015552565.1_ASM1555256v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA637878 1302 SAMN15532892 ASM1555256v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:19.813 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 29.3x 95.61 99.63 0.19 99.99 0.06 GCF_015552565.1 JADNFA01 2061 2141 2141 42 3 34 1 Streptococcus_gordonii_homd_HMT_622 GCA_015552665.1 HMT-073 1001283B150225_161107_H12 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis 1001283B150225_161107_H12 14 2091267 41.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/552/665/GCA_015552665.1_ASM1555266v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001072385 PRJNA637878 2787122 SAMN15532844 ASM1555266v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:19.026 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 88.6x 99.61 0.07 99.98 0.38 GCF_015552665.1 JADNFC01 1946 2038 2038 41 6 44 1 Streptococcus_australis_homd_HMT_073 GCA_015552935.1 HMT-447 1001295B_180824_G3 Named Cultivated Oral (Abundance: No Data) HMT-447 Fusobacterium simiae 1001295B_180824_G3 61 2452360 27.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/552/935/GCA_015552935.1_ASM1555293v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium simiae PRJNA637878 2787123 SAMN15532534 ASM1555293v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:14.113 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 70.2x 100 0 99.88 0.07 GCF_015552935.1 JADNFS01 2275 2347 2347 22 5 44 1 Fusobacterium_simiae_homd_HMT_447 GCA_015553015.1 HMT-071 J1101437_171009_E6 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus J1101437_171009_E6 11 1964791 40.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/553/015/GCA_015553015.1_ASM1555301v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA637878 1303 SAMN15533002 ASM1555301v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:21.583 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 107.3x 93.3 99.87 0.2 100 0.05 GCF_015553015.1 JADNFW01 1870 1964 1964 45 3 45 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_015553015.1 HMT-071 J1101437_171009_E6 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus J1101437_171009_E6 11 1964791 40.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/553/015/GCA_015553015.1_ASM1555301v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA637878 1303 SAMN15533002 ASM1555301v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:21.583 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 107.3x 93.3 99.87 0.2 100 0.05 GCF_015553015.1 JADNFW01 1870 1964 1964 45 3 45 1 Streptococcus_oralis_HMT_071_398_707 GCA_015554925.1 HMT-161 1001216B_150713_F11 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula 1001216B_150713_F11 13 2127759 38.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/554/925/GCA_015554925.1_ASM1555492v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA637878 29466 SAMN15532431 ASM1555492v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:11.986 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 68.4x 96.65 100 0 99.99 0.28 GCF_015554925.1 JADNJL01 1935 2007 2007 22 6 43 1 Veillonella_parvula_homd_HMT_161 GCA_015555235.1 HMT-576 D6t1_180914_C10 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus D6t1_180914_C10 85 1863546 37.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/555/235/GCA_015555235.1_ASM1555523v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA637878 76860 SAMN15532404 ASM1555523v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:11.503 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 33.3x 97.84 99 0 99.97 0.09 GCF_015555235.1 JADNKA01 1795 1865 1865 31 3 35 1 Streptococcus_constellatus_homd_HMT_576 GCA_015556095.1 HMT-411 1001095IJ_161003_H11 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 1001095IJ_161003_H11 33 2172075 41.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/556/095/GCA_015556095.1_ASM1555609v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_Q PRJNA637878 1318 SAMN15533141 ASM1555609v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:23.743 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 27.4x 93.91 100 0.17 100 0.02 GCF_015556095.1 JADNLT01 2057 2141 2141 36 3 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_015556125.1 HMT-686 1001287H_170206_C7 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1001287H_170206_C7 28 1990200 36.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/556/125/GCA_015556125.1_ASM1555612v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA637878 1309 SAMN15533142 ASM1555612v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:23.756 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 108.4x 99.11 100 0 100 0.04 GCF_015556125.1 JADNLU01 1891 1980 1980 41 5 42 1 Streptococcus_mutans_homd_HMT_686 GCA_015556225.1 HMT-755 1001713B170131_170501_D3 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 1001713B170131_170501_D3 18 2108549 40.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/556/225/GCA_015556225.1_ASM1555622v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA637878 1304 SAMN15532810 ASM1555622v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:18.520 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 92.8x 94.96 99.54 1.02 99.99 0.02 GCF_015556225.1 JADNLY01 1927 2028 2028 53 3 44 1 Streptococcus_salivarius_homd_HMT_755 GCA_015556735.1 HMT-966 BSD2780061688b_171218_A10 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-966 Alistipes shahii BSD2780061688b_171218_A10 24 3239091 58.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/556/735/GCA_015556735.1_ASM1555673v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii PRJNA637878 328814 SAMN15533325 ASM1555673v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:26.690 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 57.5x 99.04 100 0.48 99.99 1.03 GCF_015556735.1 JADNNA01 2734 2807 2807 18 3 51 1 Alistipes_shahii_homd_HMT_966 GCA_015556995.1 HMT-966 D40t1_170626_H5 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-966 Alistipes shahii D40t1_170626_H5 83 3476415 57.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/556/995/GCA_015556995.1_ASM1555699v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii PRJNA637878 328814 SAMN15634165 ASM1555699v1 Scaffold SPAdes v. 3.10.1 2020-07-23T18:54:08.420 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 27.6x 99 100 0 99.98 0.76 GCF_015556995.1 JADNNJ01 2965 3039 3039 20 3 50 1 Alistipes_shahii_homd_HMT_966 GCA_015557515.1 HMT-960 D53t1_180928_G2 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-960 Agathobacter rectalis D53t1_180928_G2 41 2883067 41.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/557/515/GCA_015557515.1_ASM1555751v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__Agathobacter rectalis PRJNA637878 39491 SAMN15532692 ASM1555751v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:16.676 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 28.4x 97.74 99.52 0.72 99.9 0.65 GCF_015557515.1 JADNON01 2654 2772 2772 57 2 58 1 Agathobacter_rectalis_homd_HMT_960 GCA_015557775.1 HMT-411 D55t1_190419_F12 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis D55t1_190419_F12 14 2168021 41.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/557/775/GCA_015557775.1_ASM1555777v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_AA PRJNA637878 1318 SAMN15533108 ASM1555777v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:23.250 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 27.9x 93.96 100 0 100 0.03 GCF_015557775.1 JADNOY01 2066 2150 2150 36 3 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_015557865.1 HMT-962 1001136B_160425_B10 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-962 Hominimerdicola aceti 1001136B_160425_B10 17 2602651 42.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/557/865/GCA_015557865.1_ASM1555786v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola;s__Hominimerdicola aceti PRJNA637878 1160721 SAMN15532456 ASM1555786v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:12.433 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 56.6x 96.92 98.63 0 99.98 3.15 GCF_015557865.1 JADNPD01 2324 2392 2392 17 4 46 1 Hominimerdicola_aceti_homd_HMT_962 GCA_015558365.1 HMT-962 D59t2_181005_B8 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-962 Hominimerdicola aceti D59t2_181005_B8 29 3146046 42.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/558/365/GCA_015558365.1_ASM1555836v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola;s__Hominimerdicola aceti PRJNA637878 1160721 SAMN15533114 ASM1555836v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:23.340 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 28.6x 97.74 97.95 0 100 4.57 GCF_015558365.1 JADMNX01 2952 3031 3031 24 3 51 1 Hominimerdicola_aceti_homd_HMT_962 GCA_015558405.1 HMT-966 1001275B_160808_A9 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-966 Alistipes shahii 1001275B_160808_A9 55 3561746 57.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/558/405/GCA_015558405.1_ASM1555840v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii PRJNA637878 328814 SAMN15533117 ASM1555840v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:23.386 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 53.6x 98.96 100 0 99.97 1.54 GCF_015558405.1 JADMNV01 2990 3063 3063 18 3 51 1 Alistipes_shahii_homd_HMT_966 GCA_015559215.1 HMT-411 D43t1_170807_F3 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis D43t1_170807_F3 70 2113234 41.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/559/215/GCA_015559215.1_ASM1555921v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp900766505 PRJNA637878 1318 SAMN15533302 ASM1555921v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:26.306 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 27.9x 94.09 100 0.24 100 0 GCF_015559215.1 JADMPM01 1989 2070 2070 34 3 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_015559305.1 HMT-576 1001254J_160919_C10 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus 1001254J_160919_C10 6 1755446 38.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/559/305/GCA_015559305.1_ASM1555930v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA637878 76860 SAMN15533195 ASM1555930v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:24.566 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 109.1x 97.68 99 0 99.98 0.13 GCF_015559305.1 JADMPR01 1690 1772 1772 36 3 42 1 Streptococcus_constellatus_homd_HMT_576 GCA_015559775.1 HMT-966 1001095IJ_161003_G7 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-966 Alistipes shahii 1001095IJ_161003_G7 71 3378421 57.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/559/775/GCA_015559775.1_ASM1555977v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii PRJNA637878 328814 SAMN15532876 ASM1555977v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:19.523 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 28.1x 99.05 100 0 99.99 0.73 GCF_015559775.1 JADMQM01 2826 2897 2897 18 3 49 1 Alistipes_shahii_homd_HMT_966 GCA_015559825.1 HMT-073 D55t1_190419_A7 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis D55t1_190419_A7 12 1958475 42.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/559/825/GCA_015559825.1_ASM1555982v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001072385 PRJNA637878 113107 SAMN15532770 ASM1555982v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:17.900 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 29.7x 93.72 99.49 0.34 99.99 0.03 GCF_015559825.1 JADMQQ01 1823 1908 1908 38 3 43 1 Streptococcus_australis_homd_HMT_073 GCA_015560245.1 HMT-415 1001713B170207_170306_C3 Named Cultivated Oral (Abundance: Medium) HMT-415 Streptococcus rubneri 1001713B170207_170306_C3 11 2157038 41.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/560/245/GCA_015560245.1_ASM1556024v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus rubneri PRJNA637878 1234680 SAMN15532579 ASM1556024v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:14.853 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 60.0x 97.14 100 0.82 99.99 0.03 GCF_015560245.1 JADMRL01 2013 2097 2097 32 6 45 1 Streptococcus_rubneri_homd_HMT_415 GCA_015560745.1 HMT-411 D53t1_180928_H2 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis D53t1_180928_H2 23 2071204 42.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/560/745/GCA_015560745.1_ASM1556074v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_V PRJNA637878 1318 SAMN15532487 ASM1556074v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:12.953 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 28.9x 94.27 100 0.11 100 0 GCF_015560745.1 JADMSI01 1923 1997 1997 37 3 33 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_015560905.1 HMT-073 1001095H_141210_D1 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis 1001095H_141210_D1 110 1922598 42.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/560/905/GCA_015560905.1_ASM1556090v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA637878 113107 SAMN15532807 ASM1556090v1 Contig SPAdes v. 3.10.1 2020-07-14T14:32:18.473 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 59.7x 93.41 99.66 0 99.94 0 GCF_015560905.1 JADMSS01 1850 1899 1899 32 3 13 1 Streptococcus_australis_homd_HMT_073 GCA_015560925.1 HMT-976 D31t1_170403_E10 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-976 Phocaeicola massiliensis D31t1_170403_E10 62 4015887 42.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/560/925/GCA_015560925.1_ASM1556092v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola massiliensis PRJNA637878 204516 SAMN15532804 ASM1556092v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:18.430 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 23.7x 99.23 99.16 1.21 99.99 0.13 GCF_015560925.1 JADMST01 3396 3501 3501 37 7 60 1 Phocaeicola_massiliensis_homd_HMT_976 GCA_015561235.1 HMT-071 1001095IJ_161003_A5 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 1001095IJ_161003_A5 9 1909643 41.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/561/235/GCA_015561235.1_ASM1556123v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BK PRJNA637878 1303 SAMN15532657 ASM1556123v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:16.076 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 30.2x 92.96 99.87 0.73 100 0.07 GCF_015561235.1 JADMTC01 1881 1977 1977 49 3 43 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_015561235.1 HMT-071 1001095IJ_161003_A5 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 1001095IJ_161003_A5 9 1909643 41.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/561/235/GCA_015561235.1_ASM1556123v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BK PRJNA637878 1303 SAMN15532657 ASM1556123v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:16.076 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 30.2x 92.96 99.87 0.73 100 0.07 GCF_015561235.1 JADMTC01 1881 1977 1977 49 3 43 1 Streptococcus_oralis_HMT_071_398_707 GCA_015594635.1 HMT-543 HF-100 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus HF-100 17 1889478 38.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/594/635/GCA_015594635.1_ASM1559463v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA674965 2785791 SAMN16685993 ASM1559463v1 Contig HGAP v. 4.0 2020-11-06T03:01:19.710 China: Sichuan stool Illumina Chinese Center for Disease Control and Prevention 100.0x 99.53 0 99.93 0.05 GCF_015594635.1 JADNQV01 1826 1911 1911 32 4 48 1 Streptococcus_anginosus_homd_HMT_543 GCA_015594645.1 HMT-543 HF-2466 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus HF-2466 29 1975024 38.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/594/645/GCA_015594645.1_ASM1559464v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA674967 2785792 SAMN16685995 ASM1559464v1 Contig HGAP v. 4.0 2020-11-06T03:17:05.500 China: Qinghai stool Illumina Chinese Center for Disease Control and Prevention 100.0x 99.88 1.42 99.92 1.02 GCF_015594645.1 JADNQU01 1952 2041 2041 41 5 42 1 Streptococcus_anginosus_homd_HMT_543 GCA_015602705.1 HMT-005 12CE1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-005 Acinetobacter lwoffii 12CE1 1 2993055 43.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/602/705/GCA_015602705.1_ASM1560270v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter lwoffii_E PRJNA645977 28090 SAMN15522024 ASM1560270v1 Complete Genome Flye v. 2.7.1 2020-07-13T19:53:04.060 Australia: Queensland Prawn digestive tract PacBio RS; Illumina HiSeq Macquarie University 330.0x 95.63 99.38 0 100 0.01 GCF_015602705.1 2783 2905 2905 14 21 86 1 Acinetobacter_lwoffii_homd_HMT_005 GCA_015645205.1 HMT-116 C34 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis C34 33 2558708 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/645/205/GCA_015645205.1_ASM1564520v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA674911 29388 SAMN16679764 ASM1564520v1 Contig SPAdes v. 3.10 2020-11-05T20:54:05.276 Taiwan blood Illumina HiSeq Zhejiang University School of Medicine 100.0x 98.87 99.81 0.36 99.99 0.37 GCF_015645205.1 JADOYF01 2444 2568 2568 51 10 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_015645265.1 HMT-116 C06_1 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis C06_1 28 2518283 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/645/265/GCA_015645265.1_ASM1564526v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA674911 29388 SAMN16679759 ASM1564526v1 Contig SPAdes v. 3.10 2020-11-05T20:54:05.193 Taiwan blood Illumina HiSeq Zhejiang University School of Medicine 100.0x 98.88 99.81 0.36 99.99 0.34 GCF_015645265.1 JADOYK01 2384 2507 2507 50 10 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_015666945.1 HMT-622 BSD2780120874_150323_D6 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii BSD2780120874_150323_D6 8 2240646 40.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/666/945/GCA_015666945.1_ASM1566694v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA637878 1302 SAMN15532595 ASM1566694v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:15.110 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 55.6x 95.77 100 0 100 0.15 GCF_015666945.1 JADPDF01 2137 2209 2209 29 3 39 1 Streptococcus_gordonii_homd_HMT_622 GCA_015668835.1 HMT-964 1001262B_160229_H2 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-964 Alistipes onderdonkii 1001262B_160229_H2 16 3412381 58.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/668/835/GCA_015668835.1_ASM1566883v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii PRJNA637878 328813 SAMN15533084 ASM1566883v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:22.880 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 53.0x 98.45 99.28 0.48 99.99 0.19 GCF_015668835.1 JADPGS01 2734 2794 2794 10 4 45 1 Alistipes_onderdonkii_homd_HMT_964 GCA_015668935.1 HMT-686 1001270H_150608_B10 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1001270H_150608_B10 23 2017397 36.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/668/935/GCA_015668935.1_ASM1566893v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA637878 1309 SAMN15533001 ASM1566893v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:21.570 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 46.1x 99.27 99.88 0.56 100 0.21 GCF_015668935.1 JADOZJ01 1890 1963 1963 27 6 39 1 Streptococcus_mutans_homd_HMT_686 GCA_015669055.1 HMT-768 1001283B150210_160208_F1 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus 1001283B150210_160208_F1 53 2101309 43.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/669/055/GCA_015669055.1_ASM1566905v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJNA637878 1310 SAMN15533106 ASM1566905v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:23.216 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 90.8x 99.06 98.88 0 100 0.1 GCF_015669055.1 JADOZM01 1956 2029 2029 32 5 35 1 Streptococcus_sobrinus_homd_HMT_768 GCA_015669655.1 HMT-686 D53t1_180928_E8 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans D53t1_180928_E8 29 1987784 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/669/655/GCA_015669655.1_ASM1566965v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA637878 1309 SAMN15532791 ASM1566965v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:18.220 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 30.0x 99.33 100 0 100 0.1 GCF_015669655.1 JADPAN01 1853 1934 1934 33 5 42 1 Streptococcus_mutans_homd_HMT_686 GCA_015670115.1 HMT-686 1001095IJ_161003_G6 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1001095IJ_161003_G6 25 2005180 36.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/670/115/GCA_015670115.1_ASM1567011v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA637878 1309 SAMN15533321 ASM1567011v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:26.606 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 29.7x 99.28 100 0 100 0.11 GCF_015670115.1 JADPBH01 1868 1948 1948 31 7 41 1 Streptococcus_mutans_homd_HMT_686 GCA_015670285.1 HMT-686 D40t1_170626_E1 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans D40t1_170626_E1 19 1995468 36.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/670/285/GCA_015670285.1_ASM1567028v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA637878 1309 SAMN15532872 ASM1567028v1 Scaffold SPAdes v. 3.10.1 2020-07-14T14:32:19.466 USA stool Illumina HiSeq Icahn School of Medicine at Mount Sinai 30.2x 99.33 100 0.19 100 0.13 GCF_015670285.1 JADPBL01 1857 1944 1944 44 6 36 1 Streptococcus_mutans_homd_HMT_686 GCA_015679285.1 HMT-971 HF-162 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-971 Bacteroides uniformis HF-162 1 4384378 46.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/285/GCA_015679285.1_ASM1567928v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis PRJNA674980 2785531 SAMN16686064 ASM1567928v1 Complete Genome HGAP v. 4.0 2020-11-06T04:54:04.650 China:Guangdong PacBio Chinese Center for Disease Control and Prevention 315.0x 99.26 0 99.99 0.14 GCF_015679285.1 3771 3872 3872 17 12 71 1 Bacteroides_uniformis_homd_HMT_971 GCA_015679665.1 HMT-669 16-579 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 16-579 1 2179401 51.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/665/GCA_015679665.1_ASM1567966v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429014 ASM1567966v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.723 Sweden missing PacBio Orebro University Hospital 421.4x 97.31 99.83 0.21 99.99 0 GCF_015679665.1 2025 2116 2116 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_015679705.1 HMT-669 16-306 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 16-306 1 2169328 51.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/705/GCA_015679705.1_ASM1567970v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429013 ASM1567970v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.697 Sweden missing PacBio Orebro University Hospital 462.3x 97.3 99.69 0 99.79 0 2081 2172 2172 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_015679735.1 HMT-669 16-92 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 16-92 1 2176177 51.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/735/GCA_015679735.1_ASM1567973v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429012 ASM1567973v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.657 Sweden missing PacBio Orebro University Hospital 374.8x 97.3 99.83 0.21 99.99 0 GCF_015679735.1 2032 2123 2123 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_015679815.1 HMT-669 15-215 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 15-215 1 2179038 51.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/815/GCA_015679815.1_ASM1567981v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429009 ASM1567981v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.570 Sweden missing PacBio Orebro University Hospital 258.7x 97.3 99.83 0.21 99.98 0 GCF_015679815.1 2044 2135 2135 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_015679845.1 HMT-669 15-198 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 15-198 1 2179025 51.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/845/GCA_015679845.1_ASM1567984v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429008 ASM1567984v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.557 Sweden missing PacBio Orebro University Hospital 793.4x 97.3 99.51 0.21 99.99 0 GCF_015679845.1 2046 2137 2137 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_015679865.1 HMT-669 14-627 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 14-627 1 2196100 51.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/865/GCA_015679865.1_ASM1567986v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429005 ASM1567986v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.510 Sweden missing PacBio Orebro University Hospital 1035.8x 97.3 99.83 0.21 99.99 0 GCF_015679865.1 2047 2139 2139 19 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_015679885.1 HMT-669 14-159 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 14-159 1 2170460 51.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/885/GCA_015679885.1_ASM1567988v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429004 ASM1567988v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.493 Sweden missing PacBio Orebro University Hospital 275.9x 97.27 99.51 0.1 99.9 0.01 2065 2156 2156 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_015679905.1 HMT-669 12-208 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 12-208 1 2171562 51.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/905/GCA_015679905.1_ASM1567990v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429003 ASM1567990v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.480 Sweden missing PacBio Orebro University Hospital 380.0x 97.3 99.83 0.21 99.99 0 GCF_015679905.1 2021 2112 2112 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_015679925.1 HMT-669 11-251 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 11-251 1 2182561 51.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/925/GCA_015679925.1_ASM1567992v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429002 ASM1567992v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.457 Sweden missing PacBio Orebro University Hospital 342.0x 97.29 99.77 0.21 99.98 0 GCF_015679925.1 2049 2140 2140 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_015679945.1 HMT-433 P15UCO-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P15UCO-S2 3 1946644 39.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/945/GCA_015679945.1_ASM1567994v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA348396 199 SAMN05908162 ASM1567994v1 Complete Genome Canu v. 1.7.1 2016-10-14T02:37:04.926 Australia Oral Oxford Nanopore MiniION University of New South Wales 421.0x 88.38 99.51 0 99.98 0.17 GCF_015679945.1 1886 1944 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_015679945.1 HMT-433 P15UCO-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 P15UCO-S2 3 1946644 39.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/945/GCA_015679945.1_ASM1567994v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJNA348396 199 SAMN05908162 ASM1567994v1 Complete Genome Canu v. 1.7.1 2016-10-14T02:37:04.926 Australia Oral Oxford Nanopore MiniION University of New South Wales 421.0x 88.38 99.51 0 99.98 0.17 GCF_015679945.1 1886 1944 0 4 6 47 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_015679965.1 HMT-575 H1O1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H1O1 1 1861371 37.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/965/GCA_015679965.1_ASM1567996v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_L PRJNA348396 199 SAMN05908145 ASM1567996v1 Complete Genome Canu v. 1.7.1 2016-10-14T02:37:03.540 Australia Oral Oxford Nanopore MiniION University of New South Wales 188.0x 93.88 99.88 0.37 99.96 0 GCF_015679965.1 1866 1924 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_015679965.1 HMT-575 H1O1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 H1O1 1 1861371 37.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/965/GCA_015679965.1_ASM1567996v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_L PRJNA348396 199 SAMN05908145 ASM1567996v1 Complete Genome Canu v. 1.7.1 2016-10-14T02:37:03.540 Australia Oral Oxford Nanopore MiniION University of New South Wales 188.0x 93.88 99.88 0.37 99.96 0 GCF_015679965.1 1866 1924 0 4 6 47 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_015679985.1 HMT-575 P3UCO1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 P3UCO1 1 1800519 37.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/985/GCA_015679985.1_ASM1567998v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AC PRJNA348396 199 SAMN05908159 ASM1567998v1 Complete Genome Canu v. 1.7.1 2016-10-14T02:37:04.713 Australia Oral Oxford Nanopore MiniION University of New South Wales 57.0x 93.76 99.88 0.37 99.96 0.06 GCF_015679985.1 1795 1853 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_015679985.1 HMT-575 P3UCO1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 P3UCO1 1 1800519 37.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/679/985/GCA_015679985.1_ASM1567998v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AC PRJNA348396 199 SAMN05908159 ASM1567998v1 Complete Genome Canu v. 1.7.1 2016-10-14T02:37:04.713 Australia Oral Oxford Nanopore MiniION University of New South Wales 57.0x 93.76 99.88 0.37 99.96 0.06 GCF_015679985.1 1795 1853 0 4 6 47 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_015680005.1 HMT-575 P3UCB1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 P3UCB1 1 1831655 37.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/680/005/GCA_015680005.1_ASM1568000v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AC PRJNA348396 199 SAMN05908158 ASM1568000v1 Complete Genome Canu v. 1.7.1 2016-10-14T02:37:04.596 Australia Intestinal biopsy Oxford Nanopore MiniION University of New South Wales 18.0x 93.77 99.88 0.37 99.97 0.05 GCF_015680005.1 1839 1897 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_015680005.1 HMT-575 P3UCB1 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 P3UCB1 1 1831655 37.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/680/005/GCA_015680005.1_ASM1568000v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AC PRJNA348396 199 SAMN05908158 ASM1568000v1 Complete Genome Canu v. 1.7.1 2016-10-14T02:37:04.596 Australia Intestinal biopsy Oxford Nanopore MiniION University of New South Wales 18.0x 93.77 99.88 0.37 99.97 0.05 GCF_015680005.1 1839 1897 0 4 6 47 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_015680025.1 HMT-433 H9O-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H9O-S2 2 2028901 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/680/025/GCA_015680025.1_ASM1568002v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA348396 199 SAMN05908146 ASM1568002v1 Complete Genome Canu v. 1.7.1 2016-10-14T02:37:03.710 Australia Oral Oxford Nanopore MiniION University of New South Wales 109.0x 88.76 99.51 0.12 99.94 0.03 GCF_015680025.1 1937 1995 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_015680025.1 HMT-433 H9O-S2 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 H9O-S2 2 2028901 39.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/680/025/GCA_015680025.1_ASM1568002v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJNA348396 199 SAMN05908146 ASM1568002v1 Complete Genome Canu v. 1.7.1 2016-10-14T02:37:03.710 Australia Oral Oxford Nanopore MiniION University of New South Wales 109.0x 88.76 99.51 0.12 99.94 0.03 GCF_015680025.1 1937 1995 0 4 6 47 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_015700065.1 HMT-425 A19006561 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae A19006561 182 2280495 39.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/700/065/GCA_015700065.1_ASM1570006v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA659631 257758 SAMN15921670 ASM1570006v1 Contig SPAdes v. 3.13.0 2020-08-27T06:34:13.883 Denmark:Slagelse Lower respiratory tract Illumina MiSeq Region Zealand 178.0x 97.22 99.62 0.9 100 0.15 GCF_015700065.1 JACSYQ01 2208 2329 2329 67 6 47 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_015700075.1 HMT-425 A19006464 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae A19006464 165 2217067 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/700/075/GCA_015700075.1_ASM1570007v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA659631 257758 SAMN15921669 ASM1570007v1 Contig SPAdes v. 3.13.0 2020-08-27T06:34:13.870 Denmark:Slagelse Lower respiratory tract Illumina MiSeq Region Zealand 151.0x 98.51 99.78 0.26 100 0.02 GCF_015700075.1 JACSYR01 2148 2286 2286 79 6 52 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_015700135.1 HMT-425 A18006565 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae A18006565 149 2183820 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/700/135/GCA_015700135.1_ASM1570013v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA659631 257758 SAMN15921667 ASM1570013v1 Contig SPAdes v. 3.13.0 2020-08-27T06:34:13.837 Denmark:Slagelse Lower respiratory tract Illumina NextSeq Region Zealand 111.0x 97.26 99.62 0.2 99.99 0.21 GCF_015700135.1 JACSYT01 2094 2203 2203 65 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_015700175.1 HMT-425 298-03 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 298-03 178 2114099 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/700/175/GCA_015700175.1_ASM1570017v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA659631 257758 SAMN15921665 ASM1570017v1 Contig SPAdes v. 3.13.0 2020-08-27T06:34:13.803 Canada:Halifax Lower respiratory tract Illumina NextSeq Region Zealand 143.0x 98.78 99.82 0.2 99.99 0.09 GCF_015700175.1 JACSYV01 2008 2123 2123 72 3 39 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_015700525.1 HMT-425 251-03 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae 251-03 174 2159568 39.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/700/525/GCA_015700525.1_ASM1570052v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA659631 257758 SAMN15921649 ASM1570052v1 Contig SPAdes v. 3.13.0 2020-08-27T06:34:13.550 Canada:Halifax Lower respiratory tract Illumina NextSeq Region Zealand 151.0x 98.54 99.42 0.2 99.99 0.07 GCF_015700525.1 JACSZL01 2057 2172 2172 72 3 39 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_015703885.1 HMT-588 181B Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-588 Bifidobacterium dentium 181B 10 2523858 58.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/703/885/GCA_015703885.1_ASM1570388v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium PRJNA666310 1689 SAMN16287905 ASM1570388v1 Contig SPAdes v. 3.14.0 2020-09-29T06:56:04.740 Italy gut Illumina MiSeq University of Parma 99.0x 99.06 99.91 0.61 99.97 0.53 GCF_015703885.1 JACZDN01 2068 2138 2138 9 3 57 1 Bifidobacterium_dentium_homd_HMT_588 GCA_015711285.1 HMT-737 ind_11 Named Cultivated Oral (Abundance: Scarce) HMT-737 Neisseria polysaccharea ind_11 60 2087788 51.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/711/285/GCA_015711285.1_ASM1571128v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria polysaccharea PRJNA643774 489 SAMN15425246 ASM1571128v1 Scaffold SPAdes v. 3.11 2020-07-02T11:10:03.873 USA Illumina NextSeq Washington University School of Medicine 279.0x 95.11 99.46 0.38 100 0.01 GCF_015711285.1 JACBLI01 1958 2034 2034 17 3 55 1 Neisseria_polysaccharea_homd_HMT_737 GCA_015732665.1 HMT-669 15-193 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 15-193 1 2172196 51.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/732/665/GCA_015732665.1_ASM1573266v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429007 ASM1573266v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.540 Sweden missing PacBio Orebro University Hospital 350.9x 97.27 97.94 0.21 94.3 2.14 2135 2226 2226 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_015732685.1 HMT-669 15-123 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis 15-123 1 2171633 51.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/732/685/GCA_015732685.1_ASM1573268v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA476247 487 SAMN09429006 ASM1573268v1 Complete Genome Celera Assembler v. HGAP v3 2018-06-15T09:40:13.523 Sweden missing PacBio Orebro University Hospital 408.1x 97.3 99.37 0.21 99.97 0 GCF_015732685.1 2054 2145 2145 19 12 59 1 Neisseria_meningitidis_homd_HMT_669 GCA_015832135.1 HMT-209 JS3051 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus JS3051 4 4613942 66.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/832/135/GCA_015832135.1_ASM1583213v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA680215 2792224 SAMN16872453 ASM1583213v1 Complete Genome FALCON v. v0.3.0 2020-11-23T05:47:05.240 Brazil soil PacBio; Illumina Shanghaijiaotong university 300.0x 99.93 0.79 100 1.95 GCF_015832135.1 4381 4477 4477 32 9 54 1 Acidovorax_ebreus_homd_HMT_209 GCA_015838875.1 HMT-734 310 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 310 1 2121469 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/838/875/GCA_015838875.1_ASM1583887v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA590750 1313 SAMN13321470 ASM1583887v1 Complete Genome Microbial Assembly v. NA 2019-11-18T13:52:04.240 Lebanon: Beirut blood PacBio Sequel American University of Beirut 547.0x 98.74 99.42 0.6 100 0.11 GCF_015838875.1 2089 2243 2243 82 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_015839035.1 HMT-734 475 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 475 1 2180123 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/839/035/GCA_015839035.1_ASM1583903v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA590750 1313 SAMN13321471 ASM1583903v1 Complete Genome Microbial Assembly v. NA 2019-11-18T13:52:04.270 Lebanon: North CSF PacBio Sequel American University of Beirut 387.0x 98.72 99.42 0.6 100 0.14 GCF_015839035.1 2144 2299 2299 83 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_015839235.1 HMT-734 521 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 521 1 2141347 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/839/235/GCA_015839235.1_ASM1583923v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA590750 1313 SAMN13321472 ASM1583923v1 Complete Genome Microbial Assembly v. NA 2019-11-18T13:52:04.286 Lebanon: Beirut Peristernal Abscess PacBio Sequel American University of Beirut 785.0x 98.76 99.42 0.6 100 0.16 GCF_015839235.1 2089 2243 2243 82 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_015840115.1 HMT-734 563 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 563 1 2140016 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/840/115/GCA_015840115.1_ASM1584011v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA590750 1313 SAMN13321475 ASM1584011v1 Complete Genome Microbial Assembly v. NA 2019-11-18T13:52:04.340 Lebanon: North blood PacBio Sequel American University of Beirut 701.0x 98.76 99.42 0.6 100 0.14 GCF_015840115.1 2090 2244 2244 82 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_015999505.1 HMT-880 KCTC 13289 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-880 Enterococcus durans KCTC 13289 4 3137200 37.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/999/505/GCA_015999505.1_ASM1599950v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B durans PRJNA680827 53345 SAMN16925173 ASM1599950v1 Complete Genome HGAP v. 3.0; Pilon v. 1.21 2020-11-25T21:44:05.081 - Dried milk PacBio RSII; Illumina MiSeq Ildong Pharmaceutical 229.0x 99.99 99.63 1.12 100 1.11 GCF_015999505.1 3004 3162 3162 68 18 71 1 Enterococcus_durans_homd_HMT_880 GCA_016026035.1 HMT-531 FDAARGOS_948 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans FDAARGOS_948 1 2105378 44.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/026/035/GCA_016026035.1_ASM1602603v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA231221 714 SAMN13450478 ASM1602603v1 Complete Genome SMRT v. 6.0.0, HGAP v. 4 2019-12-02T16:17:07.670 Not applicable missing Pacbio; Illumina US Food and Drug Administration 1877.0x 99.1 99.66 0.23 100 0.1 GCF_016026035.1 1996 2132 2132 61 19 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_016026415.1 HMT-031 FDAARGOS_938 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum FDAARGOS_938 1 2802624 58.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/026/415/GCA_016026415.1_ASM1602641v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA231221 43765 SAMN13450468 ASM1602641v1 Complete Genome Canu v. 1.7 2019-12-02T16:17:07.486 Not applicable missing Pacbio; Illumina US Food and Drug Administration 904.0x 96.28 100 0.77 100 1.35 GCF_016026415.1 2457 2535 2535 12 12 53 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_016026535.1 HMT-023 FDAARGOS_939 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-023 Delftia acidovorans FDAARGOS_939 1 6351170 66.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/026/535/GCA_016026535.1_ASM1602653v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas acidovorans PRJNA231221 80866 SAMN13450469 ASM1602653v1 Complete Genome Canu v. 1.7 2019-12-02T16:17:07.503 Not applicable missing Pacbio; Illumina US Food and Drug Administration 368.0x 97.91 99.85 0 100 0.02 GCF_016026535.1 5595 5736 5736 41 15 84 1 Delftia_acidovorans_homd_HMT_023 GCA_016026575.1 HMT-814 FDAARGOS_934 Named Cultivated Vaginal (Abundance: High) HMT-814 Fannyhessea vaginae FDAARGOS_934 1 1447017 42.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/026/575/GCA_016026575.1_ASM1602657v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Fannyhessea;s__Fannyhessea vaginae PRJNA231221 82135 SAMN13450464 ASM1602657v1 Complete Genome SMRT v. 6.0.0, HGAP v. 4 2019-12-02T16:17:07.413 Not applicable missing Pacbio; Illumina US Food and Drug Administration 1552.0x 99.99 100 0 99.41 0.27 GCF_016026575.1 1162 1222 1222 8 6 45 1 Fannyhessea_vaginae_homd_HMT_814 GCA_016026915.1 HMT-601 FDAARGOS_913 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis FDAARGOS_913 8 2626794 31.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/026/915/GCA_016026915.1_ASM1602691v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA231221 1282 SAMN13450443 ASM1602691v1 Complete Genome Canu v. 1.7 2019-12-02T16:17:07.023 Not applicable missing Pacbio; Illumina US Food and Drug Administration 2034.2x 99.7 99.81 0 99.98 0.11 GCF_016026915.1 2417 2581 2581 84 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_016027055.1 HMT-297 FDAARGOS_910 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-297 Acinetobacter johnsonii FDAARGOS_910 4 3617455 41.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/027/055/GCA_016027055.1_ASM1602705v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter johnsonii PRJNA231221 40214 SAMN13450440 ASM1602705v1 Complete Genome Canu v. 1.7 2019-12-02T16:17:06.960 Not applicable missing Pacbio; Illumina US Food and Drug Administration 939.2x 99.99 100 0.27 100 0.09 GCF_016027055.1 3521 3669 3669 35 21 91 1 Acinetobacter_johnsonii_homd_HMT_297 GCA_016027075.1 HMT-023 FDAARGOS_909 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-023 Delftia acidovorans FDAARGOS_909 2 6708547 66.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/027/075/GCA_016027075.1_ASM1602707v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas acidovorans PRJNA231221 80866 SAMN13450439 ASM1602707v1 Complete Genome Canu v. 1.7 2019-12-02T16:17:06.943 Not applicable missing Pacbio; Illumina US Food and Drug Administration 494.5x 96.47 99.85 0.16 100 0.55 GCF_016027075.1 5926 6069 6069 40 15 87 1 Delftia_acidovorans_homd_HMT_023 GCA_016027615.1 HMT-053 FDAARGOS_894 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-053 Corynebacterium minutissimum FDAARGOS_894 1 2695961 59.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/027/615/GCA_016027615.1_ASM1602761v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium minutissimum PRJNA231221 38301 SAMN13450424 ASM1602761v1 Complete Genome SMRT v. 6.0.0, HGAP v. 4 2019-12-02T16:17:06.660 Not applicable missing Pacbio; Illumina US Food and Drug Administration 1192.8x 99.99 99.78 0 99.99 0.05 GCF_016027615.1 2468 2541 2541 8 12 51 2 Corynebacterium_minutissimum_homd_HMT_053 GCA_016027775.1 HMT-023 FDAARGOS_891 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-023 Delftia acidovorans FDAARGOS_891 4 7150486 66.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/027/775/GCA_016027775.1_ASM1602777v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas acidovorans PRJNA231221 80866 SAMN13450421 ASM1602777v1 Complete Genome Canu v. 1.7, SPAdes v. 3.11.1 2019-12-02T16:17:06.603 Not applicable missing Pacbio; Illumina US Food and Drug Administration 471.6x 97.82 99.85 0.1 100 0.04 GCF_016027775.1 6465 6659 6659 95 15 83 1 Delftia_acidovorans_homd_HMT_023 GCA_016028175.1 HMT-398 FDAARGOS_886 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani FDAARGOS_886 1 1913782 41.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/028/175/GCA_016028175.1_ASM1602817v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA231221 1303 SAMN13450416 ASM1602817v1 Complete Genome Canu v. 1.7 2019-12-02T16:17:06.510 Not applicable missing Pacbio; Illumina US Food and Drug Administration 1565.0x 99.99 99.87 0.2 100 0.05 GCF_016028175.1 1787 1902 1902 40 12 62 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_016028175.1 HMT-398 FDAARGOS_886 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani FDAARGOS_886 1 1913782 41.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/028/175/GCA_016028175.1_ASM1602817v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA231221 1303 SAMN13450416 ASM1602817v1 Complete Genome Canu v. 1.7 2019-12-02T16:17:06.510 Not applicable missing Pacbio; Illumina US Food and Drug Administration 1565.0x 99.99 99.87 0.2 100 0.05 GCF_016028175.1 1787 1902 1902 40 12 62 1 Streptococcus_oralis_HMT_071_398_707 GCA_016028255.1 HMT-398 FDAARGOS_885 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani FDAARGOS_885 1 2024323 41.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/028/255/GCA_016028255.1_ASM1602825v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_AC PRJNA231221 1303 SAMN13450415 ASM1602825v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-12-02T16:17:06.490 Not applicable missing Pacbio; Illumina US Food and Drug Administration 1690.0x 93.7 99.83 0.2 99.99 0.07 GCF_016028255.1 1938 2051 2051 38 12 62 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_016028255.1 HMT-398 FDAARGOS_885 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani FDAARGOS_885 1 2024323 41.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/028/255/GCA_016028255.1_ASM1602825v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_AC PRJNA231221 1303 SAMN13450415 ASM1602825v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2019-12-02T16:17:06.490 Not applicable missing Pacbio; Illumina US Food and Drug Administration 1690.0x 93.7 99.83 0.2 99.99 0.07 GCF_016028255.1 1938 2051 2051 38 12 62 1 Streptococcus_oralis_HMT_071_398_707 GCA_016028295.1 HMT-331 FDAARGOS_882 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis FDAARGOS_882 1 2216575 37.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/028/295/GCA_016028295.1_ASM1602829v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJNA231221 29379 SAMN13450412 ASM1602829v1 Complete Genome Canu v. 1.7 2019-12-02T16:17:06.433 Not applicable missing Pacbio; Illumina US Food and Drug Administration 1603.0x 99.99 99.45 0 99.99 0.02 GCF_016028295.1 2096 2215 2215 42 16 60 1 Staphylococcus_auricularis_homd_HMT_331 GCA_016028715.1 HMT-956 FDAARGOS_871 Named Cultivated Oral (Abundance: High) HMT-956 Neisseria cinerea FDAARGOS_871 1 1832901 50.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/028/715/GCA_016028715.1_ASM1602871v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria cinerea PRJNA231221 483 SAMN13450401 ASM1602871v1 Complete Genome SMRT v. 6.0.0, HGAP v. 4 2019-12-02T16:17:06.216 Not applicable missing Pacbio; Illumina US Food and Drug Administration 2111.0x 99.99 98.12 0 100 0 GCF_016028715.1 1719 1817 1817 25 12 60 1 Neisseria_cinerea_homd_HMT_956 GCA_016028755.1 HMT-711 FDAARGOS_870 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-711 Moraxella osloensis FDAARGOS_870 1 2435828 43.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/028/755/GCA_016028755.1_ASM1602875v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella_A;s__Moraxella_A osloensis PRJNA231221 34062 SAMN13450400 ASM1602875v1 Complete Genome Canu v. 1.7 2019-12-02T16:17:06.200 Not applicable missing Pacbio; Illumina US Food and Drug Administration 1322.0x 99.99 99.71 0 100 0.03 GCF_016028755.1 2113 2272 2272 99 12 47 1 Moraxella_osloensis_homd_HMT_711 GCA_016028775.1 HMT-098 FDAARGOS_869 Named Cultivated Nasal (Abundance: High) HMT-098 Moraxella nonliquefaciens FDAARGOS_869 2 2343743 41.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/028/775/GCA_016028775.1_ASM1602877v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella nonliquefaciens PRJNA231221 478 SAMN13450399 ASM1602877v1 Complete Genome SMRT v. 6.0.0, HGAP v. 4 2019-12-02T16:17:06.180 Not applicable missing Pacbio; Illumina US Food and Drug Administration 1551.0x 99.99 96.85 0.48 100 0.08 GCF_016028775.1 2171 2241 2241 8 12 49 1 Moraxella_nonliquefaciens_homd_HMT_098 GCA_016117815.1 HMT-971 FDAARGOS_901 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-971 Bacteroides uniformis FDAARGOS_901 1 4728573 46.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/117/815/GCA_016117815.1_ASM1611781v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis PRJNA231221 820 SAMN13450431 ASM1611781v1 Chromosome Canu v. 1.7 2019-12-02T16:17:06.790 Not applicable missing Pacbio; Illumina US Food and Drug Administration 816.0x 99.99 99.26 1.12 99.99 2.78 GCF_016117815.1 3868 3961 3961 18 12 63 0 Bacteroides_uniformis_homd_HMT_971 GCA_016126015.1 HMT-326 p1a2 Named Cultivated Oral (Abundance: Medium) HMT-326 Capnocytophaga endodontalis p1a2 56 3236447 38.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/126/015/GCA_016126015.1_ASM1612601v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga periodontitidis PRJNA682897 2795027 SAMN17013666 ASM1612601v1 Contig SPAdes v. 3.1.1 2020-12-07T03:27:04.813 China: Beijing subgingival plaque Illumina HiSeq WFCC-MRCEN World Data Centre for Microoganisms(WDCM) 500.0x 100 0.48 99.62 0.11 GCF_016126015.1 JAEFDB01 3018 3070 3070 9 3 39 1 Capnocytophaga_periodontitidis_homd_HMT_326 GCA_016126035.1 HMT-326 051621 Named Cultivated Oral (Abundance: Medium) HMT-326 Capnocytophaga endodontalis 051621 53 3136201 38.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/126/035/GCA_016126035.1_ASM1612603v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga periodontitidis PRJNA682898 2795027 SAMN17013705 ASM1612603v1 Contig SPAdes v. 3.1.1 2020-12-07T03:31:04.200 China:Beijing subgingival plaque Illumina HiSeq WFCC-MRCEN World Data Centre for Microoganisms(WDCM) 500.0x 97.08 100 0 99.85 0.16 GCF_016126035.1 JAEFDC01 2889 2942 2942 9 2 41 1 Capnocytophaga_periodontitidis_homd_HMT_326 GCA_016126915.1 HMT-053 FDAARGOS_992 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-053 Corynebacterium minutissimum FDAARGOS_992 1 2696014 59.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/126/915/GCA_016126915.1_ASM1612691v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium minutissimum PRJNA231221 38301 SAMN16357161 ASM1612691v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:08.460 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1382.6x 99.99 99.78 0 99.99 0.05 GCF_016126915.1 2466 2539 2539 8 12 51 2 Corynebacterium_minutissimum_homd_HMT_053 GCA_016127095.1 HMT-853 FDAARGOS_996 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-853 Corynebacterium urealyticum FDAARGOS_996 1 2350935 64.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/095/GCA_016127095.1_ASM1612709v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium urealyticum PRJNA231221 43771 SAMN16357165 ASM1612709v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:08.530 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1463.3x 98.43 100 0 100 0.08 GCF_016127095.1 1994 2065 2065 9 9 52 1 Corynebacterium_urealyticum_homd_HMT_853 GCA_016127115.1 HMT-762 FDAARGOS_987 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis FDAARGOS_987 1 2062506 42.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/115/GCA_016127115.1_ASM1612711v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis PRJNA231221 739 SAMN16357156 ASM1612711v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:08.366 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2740.8x 99.99 99.89 0 100 0 GCF_016127115.1 1948 2064 2064 37 19 59 1 Aggregatibacter_segnis_homd_HMT_762 GCA_016127175.1 HMT-161 FDAARGOS_1046 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula FDAARGOS_1046 1 2132299 38.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/175/GCA_016127175.1_ASM1612717v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula PRJNA231221 29466 SAMN16357215 ASM1612717v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:09.526 USA:VA missing Pacbio; Illumina US Food and Drug Administration 1161.8x 99.99 100 0 100 0.09 GCF_016127175.1 1862 1943 1943 20 12 48 1 Veillonella_parvula_homd_HMT_161 GCA_016127215.1 HMT-718 FDAARGOS_1000 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae FDAARGOS_1000 1 2141704 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/215/GCA_016127215.1_ASM1612721v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA231221 729 SAMN16357169 ASM1612721v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:08.606 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1737.6x 99.99 99.89 0.23 100 1.28 GCF_016127215.1 1974 2106 2106 55 19 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_016127355.1 HMT-582 FDAARGOS_1060 Named Cultivated Oral (Abundance: Medium) HMT-582 Kingella denitrificans FDAARGOS_1060 1 2220058 54.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/355/GCA_016127355.1_ASM1612735v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_A;s__Kingella_A denitrificans PRJNA231221 502 SAMN16357229 ASM1612735v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:09.780 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1476.8x 99.99 98.37 0 99.91 0.2 GCF_016127355.1 2168 2245 2245 8 12 56 1 Kingella_denitrificans_homd_HMT_582 GCA_016127495.1 HMT-855 FDAARGOS_1061 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-855 Kytococcus sedentarius FDAARGOS_1061 1 2783568 71.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/495/GCA_016127495.1_ASM1612749v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Kytococcus;s__Kytococcus sedentarius PRJNA231221 1276 SAMN16357230 ASM1612749v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:09.800 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 837.2x 99.99 94.14 0 99.97 0.34 GCF_016127495.1 2632 2714 2714 24 6 51 1 Kytococcus_sedentarius_homd_HMT_855 GCA_016127535.1 HMT-755 FDAARGOS_1045 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius FDAARGOS_1045 1 2318817 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/535/GCA_016127535.1_ASM1612753v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA231221 1304 SAMN16357214 ASM1612753v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:09.506 USA:VA missing Pacbio; Illumina US Food and Drug Administration 1045.0x 95 99.82 2.18 99.99 0.5 GCF_016127535.1 2123 2230 2230 33 15 58 1 Streptococcus_salivarius_homd_HMT_755 GCA_016127555.1 HMT-707 FDAARGOS_1020 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis FDAARGOS_1020 1 1931547 41.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/555/GCA_016127555.1_ASM1612755v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA231221 1303 SAMN16357189 ASM1612755v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:09.023 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2887.7x 99.99 99.47 0.2 100 0.03 GCF_016127555.1 1792 1903 1903 38 12 60 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_016127555.1 HMT-707 FDAARGOS_1020 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis FDAARGOS_1020 1 1931547 41.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/555/GCA_016127555.1_ASM1612755v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA231221 1303 SAMN16357189 ASM1612755v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:09.023 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2887.7x 99.99 99.47 0.2 100 0.03 GCF_016127555.1 1792 1903 1903 38 12 60 1 Streptococcus_oralis_HMT_071_398_707 GCA_016127615.1 HMT-031 FDAARGOS_991 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum FDAARGOS_991 1 2828947 58.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/615/GCA_016127615.1_ASM1612761v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA231221 43765 SAMN16357160 ASM1612761v1 Complete Genome Canu v. 1.8 2020-10-03T14:56:08.440 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1702.0x 96.29 100 0.77 100 1.32 GCF_016127615.1 2506 2584 2584 12 12 53 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_016127635.1 HMT-801 FDAARGOS_998 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-801 Enterococcus casseliflavus FDAARGOS_998 2 3580828 42.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/635/GCA_016127635.1_ASM1612763v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D;s__Enterococcus_D casseliflavus PRJNA231221 37734 SAMN16357167 ASM1612763v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:08.566 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1258.4x 98.35 99.25 0 100 0.41 GCF_016127635.1 3469 3606 3606 58 15 63 1 Enterococcus_casseliflavus_homd_HMT_801 GCA_016127655.1 HMT-590 FDAARGOS_1026 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-590 Brevundimonas diminuta FDAARGOS_1026 1 3549082 67.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/655/GCA_016127655.1_ASM1612765v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__Brevundimonas diminuta PRJNA231221 293 SAMN16357195 ASM1612765v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:09.143 USA:VA missing Pacbio; Illumina US Food and Drug Administration 1230.4x 97.77 100 0 100 0.61 GCF_016127655.1 3442 3515 3515 15 5 53 0 Brevundimonas_diminuta_homd_HMT_590 GCA_016127715.1 HMT-789 FDAARGOS_1074 Named Cultivated Skin (Abundance: Medium) HMT-789 Staphylococcus saccharolyticus FDAARGOS_1074 1 2346516 32.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/715/GCA_016127715.1_ASM1612771v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus saccharolyticus PRJNA231221 33028 SAMN16357243 ASM1612771v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.160 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1160.4x 99.99 96.43 0.64 99.4 0.03 GCF_016127715.1 2629 2756 2756 51 16 59 1 Staphylococcus_saccharolyticus_homd_HMT_789 GCA_016127735.1 HMT-707 FDAARGOS_1075 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis FDAARGOS_1075 1 1994899 41.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/735/GCA_016127735.1_ASM1612773v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA231221 1303 SAMN16357244 ASM1612773v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.180 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1319.2x 95.53 99.87 0.6 100 0.02 GCF_016127735.1 1829 1962 1962 59 12 61 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_016127735.1 HMT-707 FDAARGOS_1075 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis FDAARGOS_1075 1 1994899 41.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/735/GCA_016127735.1_ASM1612773v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA231221 1303 SAMN16357244 ASM1612773v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.180 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1319.2x 95.53 99.87 0.6 100 0.02 GCF_016127735.1 1829 1962 1962 59 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_016127855.1 HMT-176 FDAARGOS_1037 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii FDAARGOS_1037 1 3152123 67.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/855/GCA_016127855.1_ASM1612785v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA231221 1655 SAMN16357206 ASM1612785v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:09.353 USA:VA missing Pacbio; Illumina US Food and Drug Administration 708.6x 99.99 100 0.47 99.94 0.11 GCF_016127855.1 2603 2680 2680 16 9 51 1 Actinomyces_naeslundii_homd_HMT_176 GCA_016127875.1 HMT-576 FDAARGOS_1015 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus FDAARGOS_1015 1 2038583 37.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/875/GCA_016127875.1_ASM1612787v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA231221 76860 SAMN16357184 ASM1612787v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:08.923 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1922.7x 98.18 99.35 0.35 99.98 0.61 GCF_016127875.1 1999 2108 2108 37 12 59 1 Streptococcus_constellatus_homd_HMT_576 GCA_016127895.1 HMT-098 FDAARGOS_1006 Named Cultivated Nasal (Abundance: High) HMT-098 Moraxella nonliquefaciens FDAARGOS_1006 2 2323347 42.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/895/GCA_016127895.1_ASM1612789v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella nonliquefaciens PRJNA231221 478 SAMN16357175 ASM1612789v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:08.720 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1683.7x 99.99 96.85 0.48 100 0.06 GCF_016127895.1 2135 2205 2205 8 12 49 1 Moraxella_nonliquefaciens_homd_HMT_098 GCA_016127915.1 HMT-707 FDAARGOS_1021 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis FDAARGOS_1021 1 1905756 41.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/915/GCA_016127915.1_ASM1612791v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BO PRJNA231221 1303 SAMN16357190 ASM1612791v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:09.043 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2677.1x 94.63 99.87 0.4 99.94 0.03 GCF_016127915.1 1796 1910 1910 40 12 61 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_016127915.1 HMT-707 FDAARGOS_1021 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis FDAARGOS_1021 1 1905756 41.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/915/GCA_016127915.1_ASM1612791v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BO PRJNA231221 1303 SAMN16357190 ASM1612791v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:09.043 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2677.1x 94.63 99.87 0.4 99.94 0.03 GCF_016127915.1 1796 1910 1910 40 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_016127935.1 HMT-142 FDAARGOS_1071 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-142 Staphylococcus pettenkoferi FDAARGOS_1071 2 2493628 38.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/935/GCA_016127935.1_ASM1612793v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pettenkoferi PRJNA231221 170573 SAMN16357240 ASM1612793v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.100 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 944.0x 99.99 98.9 2.35 100 0.01 GCF_016127935.1 2335 2462 2462 46 19 61 1 Staphylococcus_pettenkoferi_homd_HMT_142 GCA_016127955.1 HMT-893 FDAARGOS_1051 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 FDAARGOS_1051 2 3190396 68.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/955/GCA_016127955.1_ASM1612795v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA231221 544580 SAMN16357220 ASM1612795v1 Complete Genome Canu v. 1.8, SPAdes v. 3.11.1 2020-10-03T14:56:09.620 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 859.6x 99.99 100 0.47 100 0.04 GCF_016127955.1 2603 2680 2680 14 11 51 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_016127955.1 HMT-893 FDAARGOS_1051 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 FDAARGOS_1051 2 3190396 68.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/955/GCA_016127955.1_ASM1612795v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA231221 544580 SAMN16357220 ASM1612795v1 Complete Genome Canu v. 1.8, SPAdes v. 3.11.1 2020-10-03T14:56:09.620 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 859.6x 99.99 100 0.47 100 0.04 GCF_016127955.1 2603 2680 2680 14 11 51 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_016127975.1 HMT-853 FDAARGOS_994 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-853 Corynebacterium urealyticum FDAARGOS_994 1 2384218 64.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/975/GCA_016127975.1_ASM1612797v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium urealyticum PRJNA231221 43771 SAMN16357163 ASM1612797v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:08.496 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1248.7x 99.99 100 0 100 0.26 GCF_016127975.1 2008 2078 2078 8 9 52 1 Corynebacterium_urealyticum_homd_HMT_853 GCA_016127995.1 HMT-671 FDAARGOS_985 Named Cultivated Oral (Abundance: Low) HMT-671 Schaalia meyeri FDAARGOS_985 1 2033037 65.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/995/GCA_016127995.1_ASM1612799v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia meyeri PRJNA231221 52773 SAMN16357154 ASM1612799v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:08.330 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1985.3x 99.99 100 0.47 100 0.04 GCF_016127995.1 1741 1807 1807 6 9 50 1 Schaalia_meyeri_homd_HMT_671 GCA_016128075.1 HMT-208 FDAARGOS_1052 Named Cultivated Nasal (Abundance: Scarce) HMT-208 Corynebacterium bovis FDAARGOS_1052 2 2652195 72.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/128/075/GCA_016128075.1_ASM1612807v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium bovis PRJNA231221 36808 SAMN16357221 ASM1612807v1 Complete Genome Canu v. 1.8 2020-10-03T14:56:09.640 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 916.1x 99.98 98.24 0.45 99.52 0 GCF_016128075.1 2159 2238 2238 9 9 59 2 Corynebacterium_bovis_homd_HMT_208 GCA_016313225.1 HMT-243 ATCC 8456 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-243 Jeotgalicoccus marinus ATCC 8456 1 2090457 36.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/313/225/GCA_016313225.1_ASM1631322v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus;s__Jeotgalicoccus marinus PRJNA685651 946435 SAMN17088962 ASM1631322v1 Complete Genome RS_HGAP Assembly.2 v. 2.2 2020-12-16T09:26:04.567 not applicable not applicable PacBio RS Graz University of Technology 110.0x 98.85 0.57 99.81 1.3 GCF_016313225.1 2148 2241 2241 28 12 52 1 Jeotgalicoccus_marinus_homd_HMT_243 GCA_016403225.1 HMT-109 FDAARGOS_1012 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-109 Peptoniphilus harei FDAARGOS_1012 1 1791970 34.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/403/225/GCA_016403225.1_ASM1640322v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A harei PRJNA231221 54005 SAMN16357181 ASM1640322v1 Chromosome Canu v. 1.8 2020-10-03T14:56:08.853 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1574.0x 96.94 99.3 0 99.74 0.08 GCF_016403225.1 1646 1734 1734 37 9 41 1 Peptoniphilus_harei_homd_HMT_109 GCA_016403265.1 HMT-853 FDAARGOS_995 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-853 Corynebacterium urealyticum FDAARGOS_995 1 2397283 64.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/403/265/GCA_016403265.1_ASM1640326v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium urealyticum PRJNA231221 43771 SAMN16357164 ASM1640326v1 Chromosome Canu v. 1.8 2020-10-03T14:56:08.513 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1461.4x 98.83 100 0.09 99.99 0.24 GCF_016403265.1 2067 2143 2143 10 9 56 1 Corynebacterium_urealyticum_homd_HMT_853 GCA_016403285.1 HMT-072 FDAARGOS_1054 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum FDAARGOS_1054 1 2952500 59.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/403/285/GCA_016403285.1_ASM1640328v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA231221 43770 SAMN16357223 ASM1640328v1 Chromosome Canu v. 1.8 2020-10-03T14:56:09.676 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 904.5x 99.99 99.67 1.19 99.99 0.43 GCF_016403285.1 2765 2843 2843 8 12 57 1 Corynebacterium_striatum_homd_HMT_072 GCA_016405145.1 HMT-850 CCUG 44997 Named Cultivated Oral (Abundance: Scarce) HMT-850 Schaalia cardiffensis CCUG 44997 34 2240847 61.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/405/145/GCA_016405145.1_ASM1640514v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia cardiffensis PRJNA686825 181487 SAMN17125976 ASM1640514v1 Scaffold SOAP denovo v. 2.04 2020-12-21T01:09:05.866 United Kingdom intrauterine contraceptive device Illumina HiSeq PE150 Chinese Center for Disease Control and Prevention 300.0x 100 3.91 100 1.07 GCF_016405145.1 JAEKIA01 1854 1918 1918 10 3 50 1 Schaalia_cardiffensis_homd_HMT_850 GCA_016406015.1 HMT-216 IB03 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-216 Acidovorax temperans IB03 103 4313039 63.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/406/015/GCA_016406015.1_ASM1640601v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax;s__Acidovorax temperans PRJNA666993 2779366 SAMN16411056 ASM1640601v1 Scaffold SPAdes v. 3.13.0 2020-10-10T14:15:07.050 Denmark:Kongens Lyngby wastewater Illumina MiSeq Technical University of Denmark 100.1x 99.49 0.4 100 0.5 GCF_016406015.1 JAEFCH01 3957 4032 4032 27 0 47 1 Acidovorax_temperans_homd_HMT_216 GCA_016406225.1 HMT-601 SE48 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis SE48 3 2232213 32.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/406/225/GCA_016406225.1_ASM1640622v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA684900 1282 SAMN17071899 ASM1640622v1 Complete Genome Unicycler v. Galaxy v.0.4.8.0 2020-12-13T13:51:04.333 Netherlands Illumina MiSeq; Oxford Nanopore MinION Faculty of Science, Masaryk University 184.0x 99.64 98.13 0.28 99.52 0 GCF_016406225.1 2039 2196 2196 78 19 59 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_016406625.1 HMT-601 PH1-28 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis PH1-28 6 2598183 32.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/406/625/GCA_016406625.1_ASM1640662v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA662445 1282 SAMN16085533 ASM1640662v1 Complete Genome MaSuRCA v. v3.3.0; SPAdes v. v3.10.1; CANU v. v2.0 2020-09-09T03:42:12.256 France Oxford Nanopore MinION; Illumina HiSeq LOreal 4828.0x 99.44 99.81 0 99.99 0.11 GCF_016406625.1 2403 2574 2574 91 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_016466415.2 HMT-854 K-288 Named Cultivated Oral (Abundance: Scarce) HMT-854 Ralstonia pickettii K-288 3 4831420 63.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/466/415/GCA_016466415.2_ASM1646641v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;s__Ralstonia pickettii PRJNA686860 329 SAMN17126705 ASM1646641v2 Complete Genome ABySS v. v1.5.1 2020-12-21T06:54:08.903 USA missing Illumina HiSeq; PacBio RS University of Southampton 125.7x 99.98 99.94 0.01 99.99 0 GCF_016466415.2 4464 4559 4559 30 9 55 1 Ralstonia_pickettii_homd_HMT_854 GCA_016535385.1 HMT-641 FDAARGOS_1022 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae FDAARGOS_1022 2 1951615 38.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/535/385/GCA_016535385.1_ASM1653538v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA231221 727 SAMN16357191 ASM1653538v1 Contig SMRT v. 8.0.0; HGAP v. 4 2020-10-03T14:56:09.067 USA:MD UCC Isolate Pacbio; Illumina US Food and Drug Administration 1763.2x 97.31 99.67 0 100 1.09 GCF_016535385.1 JAEKFY01 1871 1985 1985 36 20 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_016549395.1 HMT-707 SF100 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SF100 1 1969104 41.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/549/395/GCA_016549395.1_ASM1654939v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA685325 1303 SAMN17082796 ASM1654939v1 Complete Genome CANU v. Oct-2020 2020-12-15T07:32:09.117 USA:San Francisco General Hosp blood PacBio RSII Korea Atomic Energy Research Institute 565.0x 95.62 99.87 0.2 99.99 0.01 GCF_016549395.1 1842 1953 1953 37 12 61 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_016549395.1 HMT-707 SF100 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SF100 1 1969104 41.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/549/395/GCA_016549395.1_ASM1654939v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA685325 1303 SAMN17082796 ASM1654939v1 Complete Genome CANU v. Oct-2020 2020-12-15T07:32:09.117 USA:San Francisco General Hosp blood PacBio RSII Korea Atomic Energy Research Institute 565.0x 95.62 99.87 0.2 99.99 0.01 GCF_016549395.1 1842 1953 1953 37 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_016599755.1 HMT-783 FDAARGOS_1055 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii FDAARGOS_1055 2 2523206 58.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/599/755/GCA_016599755.1_ASM1659975v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA231221 1979527 SAMN16357224 ASM1659975v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2020-10-03T14:56:09.696 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1305.0x 96.11 99.78 0 100 0.04 GCF_016599755.1 2349 2422 2422 9 12 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_016599795.1 HMT-141 FDAARGOS_1069 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-141 Staphylococcus pasteuri FDAARGOS_1069 2 2484808 31.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/599/795/GCA_016599795.1_ASM1659979v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pasteuri PRJNA231221 45972 SAMN16357238 ASM1659979v1 Complete Genome Canu v. 1.8 2020-10-03T14:56:09.970 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1188.4x 99.98 99.17 0.02 99.99 0.03 GCF_016599795.1 2377 2517 2517 59 19 61 1 Staphylococcus_pasteuri_homd_HMT_141 GCA_016613425.1 HMT-077 CIP 102622 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum CIP 102622 64 2488912 59.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/613/425/GCA_016613425.1_ASM1661342v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum PRJNA685200 38304 SAMN17079549 ASM1661342v1 Contig Unicycler v. 0.4.8 2020-12-14T16:45:04.436 France:Paris Illumina MiSeq LMSM Lab ; Rouen University 225.0x 96.48 99.69 0.44 99.99 0.06 GCF_016613425.1 JAEHFL01 2302 2364 2364 9 3 49 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_016617695.1 HMT-608 B44 Named Cultivated Oral (Abundance: Scarce) HMT-608 Limosilactobacillus fermentum B44 1 2110953 51.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/617/695/GCA_016617695.1_ASM1661769v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus fermentum PRJNA689682 1613 SAMN17214540 ASM1661769v1 Complete Genome HGAP v. 4 2021-01-05T03:42:03.916 China: Qinghai raw milk PacBio RSII Technology Center of Bright Dairy & Food Co., Ltd,China 772.0x 99.44 99.18 0.82 99.94 0 GCF_016617695.1 2041 2145 2145 29 15 59 1 Limosilactobacillus_fermentum_homd_HMT_608 GCA_016623605.1 HMT-706 Marseille-Q4569 Named Cultivated Oral (Abundance: High) HMT-706 Kingella oralis Marseille-Q4569 9 2502986 54.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/623/605/GCA_016623605.1_ASM1662360v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_B;s__Kingella_B oralis PRJNA685311 2796361 SAMN17082536 ASM1662360v1 Scaffold SPAdes v. 14.3 2020-12-15T05:33:08.360 France: Marseille dental plaque Illumina; Oxford Nanopore GridION IHU - MI 36.0x 97.64 0.23 99.97 0.28 GCF_016623605.1 JAEHNZ01 2447 2524 2524 11 12 53 1 Kingella_oralis_homd_HMT_706 GCA_016623665.1 HMT-127 FDAARGOS_1043 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis FDAARGOS_1043 18 2678023 31.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/623/665/GCA_016623665.1_ASM1662366v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA231221 1290 SAMN16357212 ASM1662366v1 Scaffold SMRT v. 8.0.0; HGAP v. 4; SPAdes v. 3.11.1 2020-10-03T14:56:09.470 USA:VA ATCC Isolate Pacbio; Illumina US Food and Drug Administration 1063.7x 99.98 97.33 9.46 99.33 2.79 GCF_016623665.1 JAEKFX01 2674 2892 2892 85 25 107 1 Staphylococcus_hominis_homd_HMT_127 GCA_016626125.1 HMT-897 HMT897 Unnamed Cultivated Oral (Abundance: Low) HMT-897 Actinomyces sp. HMT-897 HMT897 1 3281265 71.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/626/125/GCA_016626125.1_ASM1662612v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp002999235 PRJNA676127 2789424 SAMN16756448 ASM1662612v1 Complete Genome HGAP v. 4 2020-11-11T14:48:08.300 USA: Oak Ridge TN saliva PacBio Sequel Oak Ridge National Laboratory 2575.0x 99.29 0.47 100 0.15 GCF_016626125.1 2488 2560 2560 11 6 54 1 Actinomyces_sp_HMT_897_homd_HMT_897 GCA_016628325.1 HMT-050 14T168 Named Cultivated Nasal (Abundance: Low) HMT-050 Corynebacterium macginleyi 14T168 45 2434378 57.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/628/325/GCA_016628325.1_ASM1662832v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macginleyi PRJNA602417 38290 SAMN13895347 ASM1662832v1 Contig SPAdes v. 3.13.0 2020-01-21T09:23:06.603 Sweden: Orebro cornea Illumina MiSeq Aarhus University 145.0x 98.84 99.78 0.11 100 0.35 GCF_016628325.1 JAACBW01 2377 2442 2442 7 4 53 1 Corynebacterium_macginleyi_homd_HMT_050 GCA_016628425.2 HMT-050 12T220 Named Cultivated Nasal (Abundance: Low) HMT-050 Corynebacterium macginleyi 12T220 2 2497421 57.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/628/425/GCA_016628425.2_ASM1662842v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macginleyi PRJNA602417 38290 SAMN13895346 ASM1662842v2 Contig Unicycler v. v0.4.6 2020-01-21T09:23:06.587 Sweden: Orebro cornea Oxford Nanopore MinION; Illumina MiSeq Aarhus University 145.0x 98.86 99.78 0 100 0.33 GCF_016628425.2 JAACBX02 2464 2537 2537 7 12 53 1 Corynebacterium_macginleyi_homd_HMT_050 GCA_016628525.2 HMT-050 180208 Named Cultivated Nasal (Abundance: Low) HMT-050 Corynebacterium macginleyi 180208 1 2481998 57.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/628/525/GCA_016628525.2_ASM1662852v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macginleyi PRJNA602417 38290 SAMN13895341 ASM1662852v2 Complete Genome Unicycler v. v0.4.6 2020-01-21T09:23:06.507 Sweden: Orebro cornea Oxford Nanopore MinION; Illumina MiSeq Aarhus University 162.0x 98.73 99.78 0 99.98 0.01 GCF_016628525.2 2437 2510 2510 7 12 53 1 Corynebacterium_macginleyi_homd_HMT_050 GCA_016628585.1 HMT-050 180216 Named Cultivated Nasal (Abundance: Low) HMT-050 Corynebacterium macginleyi 180216 47 2390797 57.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/628/585/GCA_016628585.1_ASM1662858v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macginleyi PRJNA602417 38290 SAMN13895342 ASM1662858v1 Contig SPAdes v. 3.13.0 2020-01-21T09:23:06.523 Sweden: Orebro cornea Illumina MiSeq Aarhus University 135.0x 98.89 99.78 0 100 0.36 GCF_016628585.1 JAACCB01 2319 2386 2386 7 6 53 1 Corynebacterium_macginleyi_homd_HMT_050 GCA_016628615.2 HMT-050 180126 Named Cultivated Nasal (Abundance: Low) HMT-050 Corynebacterium macginleyi 180126 2 2405258 57.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/628/615/GCA_016628615.2_ASM1662861v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macginleyi PRJNA602417 38290 SAMN13895340 ASM1662861v2 Contig Unicycler v. v0.4.6 2020-01-21T09:23:06.493 Sweden: Orebro cornea Oxford Nanopore MinION; Illumina MiSeq Aarhus University 141.0x 98 99.78 0 99.99 0.03 GCF_016628615.2 JAACCD02 2318 2390 2390 7 12 52 1 Corynebacterium_macginleyi_homd_HMT_050 GCA_016628735.2 HMT-050 160811 Named Cultivated Nasal (Abundance: Low) HMT-050 Corynebacterium macginleyi 160811 1 2431961 57.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/628/735/GCA_016628735.2_ASM1662873v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macginleyi PRJNA602417 38290 SAMN13895334 ASM1662873v2 Complete Genome Unicycler v. v0.4.6 2020-01-21T09:23:06.387 Sweden: Orebro cornea Oxford Nanopore MinION; Illumina MiSeq Aarhus University 190.0x 99.02 99.78 0 100 0.13 GCF_016628735.2 2356 2429 2429 7 12 53 1 Corynebacterium_macginleyi_homd_HMT_050 GCA_016628845.1 HMT-050 150801 Named Cultivated Nasal (Abundance: Low) HMT-050 Corynebacterium macginleyi 150801 42 2436459 57.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/628/845/GCA_016628845.1_ASM1662884v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macginleyi PRJNA602417 38290 SAMN13895329 ASM1662884v1 Contig SPAdes v. 3.13.0 2020-01-21T09:23:06.297 Sweden: Orebro cornea Illumina MiSeq Aarhus University 152.0x 98.89 99.78 0 100 0.78 GCF_016628845.1 JAACCO01 2373 2438 2438 7 4 53 1 Corynebacterium_macginleyi_homd_HMT_050 GCA_016642265.1 HMT-948 CCUG 66490 Named Cultivated Oral (Abundance: Scarce) HMT-948 Streptococcus lactarius CCUG 66490 21 2117087 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/642/265/GCA_016642265.1_ASM1664226v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus lactarius PRJNA302716 684066 SAMN06134709 ASM1664226v1 Scaffold CLC Genomic Workbench v. 9.5.1 2016-12-13T08:12:04.813 Spain:Santiago de Compostela breast milk from a healthy woman Illumina MiSeq TAILORED-Treatment project 91.6x 99.97 99.15 1.1 99.98 0.04 GCF_016642265.1 MRXX01 1983 2094 2094 56 3 51 1 Streptococcus_lactarius_homd_HMT_948 GCA_016642415.1 HMT-415 CCUG 66516 Named Cultivated Oral (Abundance: Medium) HMT-415 Streptococcus rubneri CCUG 66516 22 2145322 41.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/642/415/GCA_016642415.1_ASM1664241v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus rubneri PRJNA302716 1234680 SAMN06134731 ASM1664241v1 Scaffold CLC Genomic Workbench v. 9.5.1 2016-12-13T08:47:02.923 Germany:Karlsruhe throat of a healthy human volunteer Illumina MiSeq TAILORED-Treatment project 80.8x 99.96 99.66 0.42 99.96 0.06 GCF_016642415.1 MRXY01 1976 2060 2060 33 3 47 1 Streptococcus_rubneri_homd_HMT_415 GCA_016647595.1 HMT-461 Kx293C1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-461 Lactobacillus ultunensis Kx293C1 2 2246389 36.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/647/595/GCA_016647595.1_ASM1664759v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus ultunensis PRJNA649755 227945 SAMN15678306 ASM1664759v1 Complete Genome Unicycler v. 0.4.4 2020-07-30T12:12:04.500 Sweden gut mucosa Illumina MiSeq; Oxford Nanopore North Carolina State University 400.0x 99.93 99.03 0 99.97 0.14 GCF_016647595.1 2184 2296 2296 35 12 64 1 Lactobacillus_ultunensis_homd_HMT_461 GCA_016648635.1 HMT-755 21.1 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 21.1 30 2114671 39.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/648/635/GCA_016648635.1_ASM1664863v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA656387 2762566 SAMN15793733 ASM1664863v1 Scaffold SPAdes v. 3.11.1 2020-08-11T19:34:07.883 Australia: Brisbane Illumina NextSeq University of Queensland 379.7x 99.68 0.22 100 0.04 GCF_016648635.1 JACLQL01 1941 2022 2022 31 3 46 1 Streptococcus_salivarius_homd_HMT_755 GCA_016648745.1 HMT-755 11.1 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 11.1 28 2198129 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/648/745/GCA_016648745.1_ASM1664874v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA656387 1304 SAMN15793728 ASM1664874v1 Scaffold SPAdes v. 3.11.1 2020-08-11T19:34:07.787 Australia: Brisbane Illumina NextSeq University of Queensland 262.4x 95.99 99.84 1.12 99.99 0.14 GCF_016648745.1 JACLQQ01 2014 2092 2092 30 3 44 1 Streptococcus_salivarius_homd_HMT_755 GCA_016648825.1 HMT-411 7.1 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 7.1 29 2138498 41.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/648/825/GCA_016648825.1_ASM1664882v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_L PRJNA656387 1318 SAMN15793725 ASM1664882v1 Scaffold SPAdes v. 3.11.1 2020-08-11T19:34:07.730 Australia: Brisbane Illumina NextSeq University of Queensland 446.9x 94.01 100 0.35 100 0.07 GCF_016648825.1 JACLQT01 2029 2111 2111 35 3 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_016648855.1 HMT-411 6.1 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 6.1 24 2135306 41.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/648/855/GCA_016648855.1_ASM1664885v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_L PRJNA656387 1318 SAMN15793724 ASM1664885v1 Scaffold SPAdes v. 3.11.1 2020-08-11T19:34:07.710 Australia: Brisbane Illumina NextSeq University of Queensland 474.8x 94.02 100 0.35 100 0.07 GCF_016648855.1 JACLQU01 2036 2117 2117 36 3 41 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_016648925.1 HMT-411 1.1 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 1.1 46 2103580 41.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/648/925/GCA_016648925.1_ASM1664892v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp900766505 PRJNA656387 1318 SAMN15793721 ASM1664892v1 Scaffold SPAdes v. 3.11.1 2020-08-11T19:34:07.640 Australia: Brisbane Illumina NextSeq University of Queensland 463.7x 94.17 100 0.07 99.99 0 GCF_016648925.1 JACLQX01 1992 2075 2075 34 3 45 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_016651435.1 HMT-428 Marseille-Q4567 Named NVP Cultivated Oral (Abundance: Medium) HMT-428 Catonella massiliensis Marseille-Q4567 3 3122925 38.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/651/435/GCA_016651435.1_ASM1665143v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Catonella;s__Catonella massiliensis PRJNA690700 2799636 SAMN17257549 ASM1665143v1 Contig SPAdes v. 14.3 2021-01-08T08:03:04.220 France: Marseille saliva Illumina; Oxford Nanopore GridION IHU - MI 131.6x 99.55 0 97.41 0.6 GCF_016651435.1 JAEPRJ01 2768 2849 2849 30 8 42 1 GCA_016658865.1 HMT-677 S022-V7-A3 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis S022-V7-A3 1 2033396 40.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/658/865/GCA_016658865.1_ASM1665886v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BT PRJNA690734 28037 SAMN17258151 ASM1665886v1 Complete Genome Unicycler v. 0.4.7 2021-01-08T10:03:04.556 United Kingdom saliva Illumina HiSeq; Oxford Nanopore MinION University of Siena 250.0x 93.9 99.82 0.64 100 0.12 GCF_016658865.1 1931 2058 2058 55 12 59 1 Streptococcus_mitis_homd_HMT_677 GCA_016694895.1 HMT-893 HMT 175 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 HMT 175 1 3024208 68.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/694/895/GCA_016694895.1_ASM1669489v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA676127 2789425 SAMN16756449 ASM1669489v1 Complete Genome HGAP v. 4 2020-11-11T14:48:08.330 USA: Oak Ridge TN saliva PacBio Sequel Oak Ridge National Laboratory 1449.0x 100 0.47 100 0.06 GCF_016694895.1 2444 2520 2520 13 9 53 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_016694895.1 HMT-893 HMT 175 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 HMT 175 1 3024208 68.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/694/895/GCA_016694895.1_ASM1669489v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA676127 2789425 SAMN16756449 ASM1669489v1 Complete Genome HGAP v. 4 2020-11-11T14:48:08.330 USA: Oak Ridge TN saliva PacBio Sequel Oak Ridge National Laboratory 1449.0x 100 0.47 100 0.06 GCF_016694895.1 2444 2520 2520 13 9 53 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_016695195.1 HMT-120 MSA_JNM24C1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus MSA_JNM24C1 1 2502707 32.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/695/195/GCA_016695195.1_ASM1669519v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA669251 1283 SAMN16450383 ASM1669519v1 Chromosome Bowtie v. 2 2020-10-19T11:40:50.913 India: Kalyani, West Bengal missing Ilumina National Institute of Biomedical Genomics 249.0x 99.5 99.05 0.08 99.98 0.11 GCF_016695195.1 2404 2581 2581 92 19 65 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_016695445.1 HMT-120 MSA_JNM60C2 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus MSA_JNM60C2 1 2511057 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/695/445/GCA_016695445.1_ASM1669544v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA669251 1283 SAMN16871746 ASM1669544v1 Chromosome Bowtie v. 2 2020-11-23T01:55:09.610 India: College of Medicine and Preterm neonate vaginally delivered and admitted to SNCU with respiratory distre Ilumina National Institute of Biomedical Genomics 421.0x 99.35 99.62 0.57 99.99 0.07 GCF_016695445.1 2431 2611 2611 89 21 69 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_016725005.1 HMT-576 FDAARGOS_1156 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus FDAARGOS_1156 1 1903262 38.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/725/005/GCA_016725005.1_ASM1672500v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA231221 76860 SAMN16357325 ASM1672500v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:11.843 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2135.8x 99.99 99 0.35 99.98 0.12 GCF_016725005.1 1802 1948 1948 74 12 59 1 Streptococcus_constellatus_homd_HMT_576 GCA_016725185.1 HMT-543 FDAARGOS_1155 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus FDAARGOS_1155 1 2284041 38.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/725/185/GCA_016725185.1_ASM1672518v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus whileyi PRJNA231221 1328 SAMN16357324 ASM1672518v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:11.823 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3070.9x 99.98 99.65 1.18 99.87 0.56 GCF_016725185.1 2229 2352 2352 51 12 59 1 Streptococcus_anginosus_homd_HMT_543 GCA_016725205.1 HMT-141 FDAARGOS_1152 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-141 Staphylococcus pasteuri FDAARGOS_1152 3 2556308 31.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/725/205/GCA_016725205.1_ASM1672520v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pasteuri PRJNA231221 45972 SAMN16357321 ASM1672520v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4, SPAdes v. 3.11.1 2020-10-03T14:56:11.770 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2005.8x 99.12 99.17 0.08 99.99 0.28 GCF_016725205.1 2421 2566 2566 63 19 62 1 Staphylococcus_pasteuri_homd_HMT_141 GCA_016725285.1 HMT-141 FDAARGOS_1151 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-141 Staphylococcus pasteuri FDAARGOS_1151 4 2634722 31.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/725/285/GCA_016725285.1_ASM1672528v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pasteuri PRJNA231221 45972 SAMN16357320 ASM1672528v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4, SPAdes v. 3.11.1 2020-10-03T14:56:11.750 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2100.1x 99.06 99.17 0.08 99.99 0.3 GCF_016725285.1 2535 2681 2681 65 19 61 1 Staphylococcus_pasteuri_homd_HMT_141 GCA_016726305.1 HMT-967 FDAARGOS_1097 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-967 Bacteroides caccae FDAARGOS_1097 1 4570941 41.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/726/305/GCA_016726305.1_ASM1672630v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae PRJNA231221 47678 SAMN16357266 ASM1672630v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.586 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 958.9x 99.99 99.22 0.08 99.95 0.53 GCF_016726305.1 3668 3767 3767 13 15 70 1 Bacteroides_caccae_homd_HMT_967 GCA_016726365.1 HMT-188 FDAARGOS_1137 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria FDAARGOS_1137 1 2583917 56.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/726/365/GCA_016726365.1_ASM1672636v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA231221 172042 SAMN16357306 ASM1672636v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:11.490 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 941.3x 99.93 98.34 0 100 0.06 GCF_016726365.1 2228 2299 2299 13 8 49 1 Rothia_aeria_homd_HMT_188 GCA_016726485.1 HMT-109 FDAARGOS_1136 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-109 Peptoniphilus harei FDAARGOS_1136 1 1929566 33.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/726/485/GCA_016726485.1_ASM1672648v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A harei PRJNA231221 54005 SAMN16357305 ASM1672648v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:11.470 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2302.9x 99.98 99.3 0 99.63 0.91 GCF_016726485.1 1777 1869 1869 41 9 41 1 Peptoniphilus_harei_homd_HMT_109 GCA_016726625.1 HMT-297 FDAARGOS_1094 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-297 Acinetobacter johnsonii FDAARGOS_1094 10 3524396 41.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/726/625/GCA_016726625.1_ASM1672662v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter johnsonii PRJNA231221 40214 SAMN16357263 ASM1672662v1 Complete Genome Canu v. 1.8 2020-10-03T14:56:10.530 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 823.0x 96.01 100 0 100 0.34 GCF_016726625.1 3497 3637 3637 30 21 88 1 Acinetobacter_johnsonii_homd_HMT_297 GCA_016727585.1 HMT-550 FDAARGOS_1086 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus FDAARGOS_1086 2 2776467 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/727/585/GCA_016727585.1_ASM1672758v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA231221 1280 SAMN16357255 ASM1672758v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4_microbial 2020-10-03T14:56:10.376 Germany:Langen missing Pacbio; Illumina US Food and Drug Administration 1572.2x 99.01 99.51 0.1 100 0.1 GCF_016727585.1 2518 2722 2722 126 16 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_016728105.1 HMT-072 FDAARGOS_1115 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum FDAARGOS_1115 1 2904831 59.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/105/GCA_016728105.1_ASM1672810v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA231221 43770 SAMN16357284 ASM1672810v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4_microbial 2020-10-03T14:56:10.983 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1584.7x 98.72 99.67 0.35 100 0.63 GCF_016728105.1 2707 2783 2783 9 12 54 1 Corynebacterium_striatum_homd_HMT_072 GCA_016728205.1 HMT-072 FDAARGOS_1116 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum FDAARGOS_1116 1 2665682 59.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/205/GCA_016728205.1_ASM1672820v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA231221 43770 SAMN16357285 ASM1672820v1 Complete Genome Canu v. 1.8 2020-10-03T14:56:11.003 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1350.5x 97.82 99.67 0.21 99.99 0.52 GCF_016728205.1 2435 2511 2511 8 12 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_016728365.1 HMT-077 FDAARGOS_1117 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum FDAARGOS_1117 1 2451854 59.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/365/GCA_016728365.1_ASM1672836v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum PRJNA231221 38304 SAMN16357286 ASM1672836v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:11.106 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1898.0x 99.99 99.6 0.22 99.97 0.06 GCF_016728365.1 2303 2375 2375 8 12 51 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_016728625.1 HMT-059 FDAARGOS_1113 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum FDAARGOS_1113 1 2461302 56.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/625/GCA_016728625.1_ASM1672862v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA231221 43769 SAMN16357282 ASM1672862v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2020-10-03T14:56:10.893 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1138.9x 98.26 99.67 0 99.99 0.04 GCF_016728625.1 2189 2252 2252 6 9 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_016728665.1 HMT-059 FDAARGOS_1112 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum FDAARGOS_1112 1 2480127 56.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/665/GCA_016728665.1_ASM1672866v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA231221 43769 SAMN16357281 ASM1672866v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.873 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 958.6x 99.99 99.78 0 99.99 0.09 GCF_016728665.1 2213 2276 2276 6 9 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_016728685.1 HMT-034 FDAARGOS_1110 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 FDAARGOS_1110 2 2829463 60.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/685/GCA_016728685.1_ASM1672868v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum_F PRJNA231221 169292 SAMN16357279 ASM1672868v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.836 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 903.2x 99.99 99.56 0 100 0.21 GCF_016728685.1 2662 2738 0 7 13 55 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_016728685.1 HMT-034 FDAARGOS_1110 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 FDAARGOS_1110 2 2829463 60.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/685/GCA_016728685.1_ASM1672868v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum_F PRJNA231221 169292 SAMN16357279 ASM1672868v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.836 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 903.2x 99.99 99.56 0 100 0.21 GCF_016728685.1 2662 2738 0 7 13 55 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_016728705.1 HMT-034 FDAARGOS_1109 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 FDAARGOS_1109 2 2737787 60.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/705/GCA_016728705.1_ASM1672870v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA231221 169292 SAMN16357278 ASM1672870v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.810 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1298.9x 99.99 99.12 0 100 0.09 GCF_016728705.1 2542 2614 0 7 12 52 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_016728705.1 HMT-034 FDAARGOS_1109 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 FDAARGOS_1109 2 2737787 60.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/705/GCA_016728705.1_ASM1672870v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA231221 169292 SAMN16357278 ASM1672870v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.810 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1298.9x 99.99 99.12 0 100 0.09 GCF_016728705.1 2542 2614 0 7 12 52 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_016728725.1 HMT-031 FDAARGOS_1108 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum FDAARGOS_1108 1 2476115 58.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/725/GCA_016728725.1_ASM1672872v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA231221 43765 SAMN16357277 ASM1672872v1 Complete Genome Canu v. 1.8 2020-10-03T14:56:10.793 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1789.1x 99.31 100 0 100 0 GCF_016728725.1 2142 2227 2227 14 15 55 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_016728745.1 HMT-031 FDAARGOS_1107 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum FDAARGOS_1107 1 2706528 58.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/728/745/GCA_016728745.1_ASM1672874v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA231221 43765 SAMN16357276 ASM1672874v1 Complete Genome SMRT v. 7.1.0, HGAP v. 4 2020-10-03T14:56:10.776 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1347.7x 96.04 100 0.77 100 1.03 GCF_016728745.1 2361 2440 2440 13 12 53 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_016745315.2 HMT-229 PCC 9108 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-229 Arthrospira platensis PCC 9108 1 6763969 44.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/745/315/GCA_016745315.2_ASM1674531v2 d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira;s__Limnospira platensis PRJNA506019 147317 SAMN10440999 ASM1674531v2 Complete Genome Nanopore v. NOV-2020 2018-11-19T10:20:03.043 China: Cheng-hai, Yunnan Chenghai Lake Illumina NovaSeq Biological Research Center (CIB-CSIC) 191.0x 98.91 0.22 98.35 0.4 6677 7123 7123 392 4 49 1 Arthrospira_platensis_homd_HMT_229 GCA_016747995.1 HMT-812 ASHA-001 Named Cultivated Gastrointestinal Tract (Abundance: Low) HMT-812 Helicobacter pylori ASHA-001 1 1616437 38.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/747/995/GCA_016747995.1_ASM1674799v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori_C PRJNA624913 210 SAMN14589633 ASM1674799v1 Complete Genome HGAP v. 3.0 2020-04-12T22:37:09.016 Peru String method PacBio RSII National Cancer Institue 500.0x 95.93 99.36 0 100 0.13 GCF_016747995.1 1538 1592 1592 13 4 36 1 Helicobacter_pylori_homd_HMT_812 GCA_016751935.1 HMT-141 FDAARGOS_1070 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-141 Staphylococcus pasteuri FDAARGOS_1070 5 2226788 31.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/751/935/GCA_016751935.1_ASM1675193v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pasteuri PRJNA231221 45972 SAMN16357239 ASM1675193v1 Scaffold SMRT v. 8.0.0, HGAP v. 4, SPAdes v. 3.11.1 2020-10-03T14:56:09.986 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1912.5x 99.06 85.51 0 85.52 0.12 GCF_016751935.1 JAEPJP01 2121 2205 2205 52 10 21 1 Staphylococcus_pasteuri_homd_HMT_141 GCA_016755635.1 HMT-812 PUNO-003 Named Cultivated Gastrointestinal Tract (Abundance: Low) HMT-812 Helicobacter pylori PUNO-003 1 1630535 38.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/755/635/GCA_016755635.1_ASM1675563v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori_CQ PRJNA625094 210 SAMN14593084 ASM1675563v1 Complete Genome HGAP v. 3 2020-04-13T16:42:07.247 Peru String method PacBio RSII National Cancer Institue 500.0x 95.14 99.53 0 99.98 0.03 GCF_016755635.1 1514 1564 1564 9 4 36 1 Helicobacter_pylori_homd_HMT_812 GCA_016766735.1 HMT-552 KGMB02810 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum KGMB02810 1 2609136 63.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/766/735/GCA_016766735.1_ASM1676673v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA545582 33010 SAMN17320314 ASM1676673v1 Complete Genome HGAP v. 3 2021-01-15T02:57:11.546 South Korea: Seongnam-si feces PacBio RSII korea research institute of bioscience and biotechnology 404.0x 98.89 100 0 100 0.25 GCF_016766735.1 2371 2450 2450 22 9 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_016766755.1 HMT-552 KGMB09337 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum KGMB09337 1 2812988 63.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/766/755/GCA_016766755.1_ASM1676675v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA545582 33010 SAMN17320317 ASM1676675v1 Complete Genome HGAP v. 3 2021-01-15T03:08:06.981 South Korea: Seongnam-si PacBio RSII korea research institute of bioscience and biotechnology 252.0x 96.01 100 0.66 100 0.19 GCF_016766755.1 2552 2635 2635 24 9 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_016766895.1 HMT-842 FDAARGOS_1102 Named Cultivated Skin (Abundance: Medium) HMT-842 Campylobacter ureolyticus FDAARGOS_1102 1 1826798 29.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/766/895/GCA_016766895.1_ASM1676689v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B ureolyticus PRJNA231221 827 SAMN16357271 ASM1676689v1 Chromosome Canu v. 1.8 2020-10-03T14:56:10.680 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3676.1x 99.99 98.95 0 100 0.11 GCF_016766895.1 1801 1863 1863 6 8 47 1 Campylobacter_ureolyticus_homd_HMT_842 GCA_016766915.1 HMT-978 FDAARGOS_1098 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-978 Phocaeicola vulgatus FDAARGOS_1098 1 5141011 42.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/766/915/GCA_016766915.1_ASM1676691v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus PRJNA231221 821 SAMN16357267 ASM1676691v1 Chromosome Canu v. 1.8 2020-10-03T14:56:10.606 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 978.9x 99.99 99.25 0.94 100 0.2 GCF_016766915.1 4185 4309 4309 21 21 81 1 Phocaeicola_vulgatus_homd_HMT_978 GCA_016766935.1 HMT-978 FDAARGOS_1099 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-978 Phocaeicola vulgatus FDAARGOS_1099 2 5359526 42.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/766/935/GCA_016766935.1_ASM1676693v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus PRJNA231221 821 SAMN16357268 ASM1676693v1 Chromosome Canu v. 1.8 2020-10-03T14:56:10.626 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 480.5x 99.12 99.25 0.19 100 0.46 GCF_016766935.1 4642 4786 4786 26 22 95 1 Phocaeicola_vulgatus_homd_HMT_978 GCA_016775375.1 HMT-112 03NH Named Cultivated Oral (Abundance: Medium) HMT-112 Peptostreptococcus stomatis 03NH 47 1931518 36.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/775/375/GCA_016775375.1_ASM1677537v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus stomatis PRJNA684904 341694 SAMN17370507 ASM1677537v1 Scaffold SPAdes v. 3.13.0 2021-01-18T02:14:05.943 South Africa: Mafikeng, Mafike diarrhea sample from child under the age of five Illumina NovaSeq North-west University 31.0x 98.04 98.6 0 99.55 0.12 GCF_016775375.1 JAEUGG01 1723 1777 1777 35 0 18 1 Peptostreptococcus_stomatis_homd_HMT_112 GCA_016785885.1 HMT-207 PRD07 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense PRD07 2 2539775 65.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/785/885/GCA_016785885.1_ASM1678588v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA602980 2054421 SAMN13914623 ASM1678588v1 Scaffold SPAdes v. 3.11.1 2020-01-23T23:11:05.597 India: Nashik river water Illumina MiSeq National Centre for Cell Science 209.0x 99.99 99.34 0.04 99.99 0.22 GCF_016785885.1 JAADJX01 2285 2359 2359 10 7 56 1 Corynebacterium_gottingense_homd_HMT_207 GCA_016791525.1 HMT-789 13T098 Named Cultivated Skin (Abundance: Medium) HMT-789 Staphylococcus saccharolyticus 13T098 10 2321374 32.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/791/525/GCA_016791525.1_ASM1679152v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus saccharolyticus PRJNA689124 33028 SAMN17199939 ASM1679152v1 Contig SPAdes v. 3.11.1 2021-01-02T08:38:06.120 Sweden: Orebro periprosthetic tissue Illumina MiSeq Aarhus University 225.0x 97.92 95.05 0 99.73 0.12 GCF_016791525.1 JAENGW01 2596 2708 2708 50 6 55 1 Staphylococcus_saccharolyticus_homd_HMT_789 GCA_016791565.1 HMT-789 DVP1-17-1678 Named Cultivated Skin (Abundance: Medium) HMT-789 Staphylococcus saccharolyticus DVP1-17-1678 10 2348904 32.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/791/565/GCA_016791565.1_ASM1679156v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus saccharolyticus PRJNA689124 33028 SAMN17199938 ASM1679156v1 Contig SPAdes v. 3.11.1 2021-01-02T08:38:06.103 Sweden: Orebro periprosthetic tissue Illumina MiSeq Aarhus University 200.0x 99.98 96.99 1.26 99.27 0.19 GCF_016791565.1 JAENGV01 2652 2763 2763 52 8 50 1 Staphylococcus_saccharolyticus_homd_HMT_789 GCA_016791585.1 HMT-789 DVP1-17-2344 Named Cultivated Skin (Abundance: Medium) HMT-789 Staphylococcus saccharolyticus DVP1-17-2344 10 2321278 32.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/791/585/GCA_016791585.1_ASM1679158v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus saccharolyticus PRJNA689124 33028 SAMN17199937 ASM1679158v1 Contig SPAdes v. 3.11.1 2021-01-02T08:38:06.083 Sweden: Orebro periprosthetic tissue Illumina MiSeq Aarhus University 254.0x 97.92 95.05 0.56 99.79 0.15 GCF_016791585.1 JAENGU01 2588 2702 2702 51 6 56 1 Staphylococcus_saccharolyticus_homd_HMT_789 GCA_016791605.1 HMT-548 FDAARGOS_1135 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-548 Peptoniphilus asaccharolyticus FDAARGOS_1135 3 2320207 32.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/791/605/GCA_016791605.1_ASM1679160v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus;s__Peptoniphilus asaccharolyticus PRJNA231221 1258 SAMN16357304 ASM1679160v1 Contig SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:11.450 Germany: Braunschweig DSMZ Isolate Pacbio; Illumina US Food and Drug Administration 2585.7x 99.98 98.95 6.99 98.8 9.5 GCF_016791605.1 JAETXN01 2325 2408 2408 28 10 44 1 Peptoniphilus_asaccharolyticus_homd_HMT_548 GCA_016802425.1 HMT-621 SRRSH204 Named Cultivated Pathogen (Abundance: Scarce) HMT-621 Neisseria gonorrhoeae SRRSH204 3 2260630 52.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/802/425/GCA_016802425.1_ASM1680242v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria gonorrhoeae PRJNA606927 485 SAMN14116988 ASM1680242v1 Complete Genome unicycler v. 0.4.7 2020-02-16T07:07:05.500 China:Hangzhou urine Illumina MiniSeq Zhejiang University 100.0x 99.33 99.82 0.31 99.99 0.09 GCF_016802425.1 2264 2355 2355 22 12 56 1 Neisseria_gonorrhoeae_homd_HMT_621 GCA_016804245.1 HMT-128 MBAZ2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis MBAZ2 1 2606118 33.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/804/245/GCA_016804245.1_ASM1680424v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA656409 28035 SAMN15783914 ASM1680424v1 Complete Genome Unicycler v. 2020 2020-08-11T06:07:04.123 Malta skin Illumina MiSeq; Oxford Nanopore GridION The BioArte Limited 100.0x 99.44 99.61 0 100 0.06 GCF_016804245.1 2444 2609 2609 87 16 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_016806945.1 HMT-326 AHN 8751 Named Cultivated Oral (Abundance: Medium) HMT-326 Capnocytophaga endodontalis AHN 8751 58 3255290 38.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/806/945/GCA_016806945.1_ASM1680694v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga periodontitidis PRJNA691590 327574 SAMN17299952 ASM1680694v1 Contig CLC Genomics Workbench v. 20 2021-01-12T15:49:04.537 Finland saliva Illumina HiSeq Bacterial Special Pathogens Branch (CDC) 60.0x 100 0 99.92 0.15 GCF_016806945.1 JAESPJ01 2967 3028 3028 12 5 43 1 Capnocytophaga_periodontitidis_homd_HMT_326 GCA_016806965.1 HMT-326 AHN 9798 Named Cultivated Oral (Abundance: Medium) HMT-326 Capnocytophaga endodontalis AHN 9798 56 3223016 38.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/806/965/GCA_016806965.1_ASM1680696v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga periodontitidis PRJNA691590 327574 SAMN17299954 ASM1680696v1 Contig CLC Genomics Workbench v. 20 2021-01-12T15:49:04.570 Finland gingiva Illumina HiSeq Bacterial Special Pathogens Branch (CDC) 60.0x 100 0 99.9 0.15 GCF_016806965.1 JAESPH01 3014 3072 3072 11 4 42 1 Capnocytophaga_periodontitidis_homd_HMT_326 GCA_016806985.1 HMT-326 AHN 9528 Named Cultivated Oral (Abundance: Medium) HMT-326 Capnocytophaga endodontalis AHN 9528 99 3200929 38.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/806/985/GCA_016806985.1_ASM1680698v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga periodontitidis PRJNA691590 327574 SAMN17299953 ASM1680698v1 Contig CLC Genomics Workbench v. 20 2021-01-12T15:49:04.553 Finland gingiva Illumina HiSeq Bacterial Special Pathogens Branch (CDC) 60.0x 99.52 0 99.95 0.1 GCF_016806985.1 JAESPI01 2961 3018 3018 11 4 41 1 Capnocytophaga_periodontitidis_homd_HMT_326 GCA_016806995.1 HMT-326 AHN 8471 = CCUG 51856 = NCTC 13374 Named Cultivated Oral (Abundance: Medium) HMT-326 Capnocytophaga endodontalis AHN 8471 = CCUG 51856 = NCTC 13374 53 3073616 38.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/806/995/GCA_016806995.1_ASM1680699v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga periodontitidis PRJNA691590 327574 SAMN17299951 ASM1680699v1 Contig CLC Genomics Workbench v. 20 2021-01-12T15:49:04.510 Finland saliva Illumina MiSeq Bacterial Special Pathogens Branch (CDC) 100.0x 96.19 0 94.56 0.24 GCF_016806995.1 JAESPK01 2824 2880 2880 10 4 41 1 Capnocytophaga_periodontitidis_homd_HMT_326 GCA_016807025.1 HMT-326 AHN9576 Named Cultivated Oral (Abundance: Medium) HMT-326 Capnocytophaga endodontalis AHN9576 55 3221018 38.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/807/025/GCA_016807025.1_ASM1680702v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga periodontitidis PRJNA691590 327574 SAMN17391448 ASM1680702v1 Contig CLC NGS Cell v. 20 2021-01-20T16:38:07.833 Finland saliva Illumina MiSeq Bacterial Special Pathogens Branch (CDC) 60.0x 100 0 99.9 0.15 GCF_016807025.1 JAEUAH01 3015 3071 3071 11 3 41 1 Capnocytophaga_periodontitidis_homd_HMT_326 GCA_016808715.1 HMT-331 s52 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis s52 29 2275253 37.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/808/715/GCA_016808715.1_ASM1680871v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJNA486830 29379 SAMN09865988 ASM1680871v1 Scaffold SPAdes v. 3.10.1 2018-08-20T15:49:07.686 USA: International Space Stati Illumina NextSeq NASA Ames Research Center 1063.0x 99.73 99.45 0 99.99 0.04 GCF_016808715.1 QVVG01 2200 2291 2291 41 1 48 1 Staphylococcus_auricularis_homd_HMT_331 GCA_016808995.1 HMT-128 s38 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis s38 19 2535435 33.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/808/995/GCA_016808995.1_ASM1680899v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA486830 28035 SAMN09865974 ASM1680899v1 Scaffold SPAdes v. 3.10.1 2018-08-20T15:49:07.380 USA: International Space Stati Illumina NextSeq NASA Ames Research Center 670.0x 99.45 99.61 0 100 0.05 GCF_016808995.1 QVUS01 2365 2496 2496 88 4 38 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_016834475.1 HMT-601 Z0118SE0269 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis Z0118SE0269 4 2544994 32.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/834/475/GCA_016834475.1_ASM1683447v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA698429 1282 SAMN17718046 ASM1683447v1 Complete Genome Unicycler v. v0.4.9 2021-02-01T02:38:04.283 South Korea: Seoul skin Illumina; PacBio RS Jeonbuk National University 569.0x 99.61 99.81 0.02 99.99 0.79 GCF_016834475.1 2364 2527 2527 83 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_016834535.1 HMT-552 KCTC 5339 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum KCTC 5339 1 2554716 63.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/834/535/GCA_016834535.1_ASM1683453v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA545582 33010 SAMN17320327 ASM1683453v1 Complete Genome HGAP v. 3 2021-01-15T03:23:09.053 South Korea: Jeongeup-si PacBio RSII korea research institute of bioscience and biotechnology 318.0x 99.99 100 0 100 0.11 GCF_016834535.1 2299 2378 2378 22 9 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_016861285.1 HMT-641 TA8730 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae TA8730 1 1852308 38.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/861/285/GCA_016861285.1_ASM1686128v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJDB10103 727 SAMD00233110 ASM1686128v1 Complete Genome Unicycler v. 0.4.9b 2020-06-18T01:00:43.667 Japan:Tokyo Illumina MiSeq; Oxford Nanopore MinION Department of Microbiology, Tokyo Metropolitan Institute of Public Health 365.0x 97.42 99.67 0 100 0.04 GCF_016861285.1 1762 1873 1873 33 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_016888605.1 HMT-141 FDAARGOS_1206 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-141 Staphylococcus pasteuri FDAARGOS_1206 5 2687438 31.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/888/605/GCA_016888605.1_ASM1688860v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pasteuri PRJNA231221 45972 SAMN16357348 ASM1688860v1 Contig SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.250 Germany: Braunschweig DSMZ Isolate Pacbio; Illumina US Food and Drug Administration 1320.2x 99.06 99.17 2.51 99.99 0.4 GCF_016888605.1 JAFEKM01 2583 2731 2731 66 20 61 1 Staphylococcus_pasteuri_homd_HMT_141 GCA_016888845.1 HMT-707 SF100 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SF100 2 1985912 41.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/888/845/GCA_016888845.1_ASM1688884v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA358614 1303 SAMN07428910 ASM1688884v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2017-07-31T15:50:05.407 USA: San Francisco blood Pacbio University of California San Francisco 16.4x 95.62 99.87 0.37 99.99 0.02 GCF_016888845.1 1869 2002 2002 37 15 80 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_016888845.1 HMT-707 SF100 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SF100 2 1985912 41.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/888/845/GCA_016888845.1_ASM1688884v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA358614 1303 SAMN07428910 ASM1688884v1 Complete Genome SMRT v. 2.3.0, HGAP v. 3 2017-07-31T15:50:05.407 USA: San Francisco blood Pacbio University of California San Francisco 16.4x 95.62 99.87 0.37 99.99 0.02 GCF_016888845.1 1869 2002 2002 37 15 80 1 Streptococcus_oralis_HMT_071_398_707 GCA_016888905.1 HMT-973 FDAARGOS_1234 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-973 Parabacteroides distasonis FDAARGOS_1234 1 4812038 45.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/888/905/GCA_016888905.1_ASM1688890v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis PRJNA231221 823 SAMN16357376 ASM1688890v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.776 USA:MD missing Pacbio; Illumina US Food and Drug Administration 617.5x 99.99 99.42 0.38 99.98 0.9 GCF_016888905.1 3993 4113 4113 15 21 83 1 Parabacteroides_distasonis_homd_HMT_973 GCA_016889165.1 HMT-601 FDAARGOS_1243 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis FDAARGOS_1243 7 2534934 32.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/165/GCA_016889165.1_ASM1688916v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA231221 1282 SAMN16357385 ASM1688916v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4, SPAdes v. 3.14.1 2020-10-03T14:56:12.943 USA:MD missing Pacbio; Illumina US Food and Drug Administration 3182.9x 99.52 99.81 0.09 99.99 0.01 GCF_016889165.1 2356 2518 2518 82 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_016889285.1 HMT-855 FDAARGOS_1200 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-855 Kytococcus sedentarius FDAARGOS_1200 1 2448756 72.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/285/GCA_016889285.1_ASM1688928v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Kytococcus;s__Kytococcus sedentarius PRJNA231221 1276 SAMN16357342 ASM1688928v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.150 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1058.3x 96.98 94.14 0.54 99.96 0.01 GCF_016889285.1 2261 2338 2338 17 6 53 1 Kytococcus_sedentarius_homd_HMT_855 GCA_016889365.1 HMT-049 FDAARGOS_1192 Named Cultivated Skin (Abundance: High) HMT-049 Corynebacterium kroppenstedtii FDAARGOS_1192 1 2446807 57.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/365/GCA_016889365.1_ASM1688936v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kroppenstedtii PRJNA231221 161879 SAMN16357334 ASM1688936v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.010 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1800.4x 99.99 97.86 0 99.99 0.01 GCF_016889365.1 2108 2180 2180 15 9 47 1 Corynebacterium_kroppenstedtii_homd_HMT_049 GCA_016889385.1 HMT-945 FDAARGOS_1199 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus FDAARGOS_1199 2 2093459 40.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/385/GCA_016889385.1_ASM1688938v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus PRJNA231221 735 SAMN16357341 ASM1688938v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4, SPAdes v. 3.14.1 2020-10-03T14:56:12.130 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2038.7x 99.99 99.43 0.3 100 0.01 GCF_016889385.1 1954 2059 2059 26 18 60 1 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_016889405.1 HMT-049 FDAARGOS_1194 Named Cultivated Skin (Abundance: High) HMT-049 Corynebacterium kroppenstedtii FDAARGOS_1194 1 2511877 57.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/405/GCA_016889405.1_ASM1688940v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudokroppenstedtii PRJNA231221 161879 SAMN16357336 ASM1688940v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.043 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1993.8x 93.59 97.41 0 99.99 0.03 GCF_016889405.1 2164 2236 2236 15 9 47 1 Corynebacterium_kroppenstedtii_homd_HMT_049 GCA_016889425.1 HMT-031 FDAARGOS_1189 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum FDAARGOS_1189 1 2474943 58.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/425/GCA_016889425.1_ASM1688942v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA231221 43765 SAMN16357331 ASM1688942v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:11.956 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2219.8x 99.99 100 0 100 0.07 GCF_016889425.1 2127 2212 2212 14 15 55 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_016889445.1 HMT-072 FDAARGOS_1197 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum FDAARGOS_1197 2 3004754 59.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/445/GCA_016889445.1_ASM1688944v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA231221 43770 SAMN16357339 ASM1688944v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.096 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3790.4x 98.71 99.78 0.53 99.99 0.67 GCF_016889445.1 2829 2906 2906 9 12 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_016889465.1 HMT-050 FDAARGOS_1195 Named Cultivated Nasal (Abundance: Low) HMT-050 Corynebacterium macginleyi FDAARGOS_1195 1 2493537 56.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/465/GCA_016889465.1_ASM1688946v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium macginleyi PRJNA231221 38290 SAMN16357337 ASM1688946v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.060 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1347.1x 99.99 99.78 0 100 0.54 GCF_016889465.1 2472 2545 2545 7 12 53 1 Corynebacterium_macginleyi_homd_HMT_050 GCA_016889745.1 HMT-967 FDAARGOS_1219 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-967 Bacteroides caccae FDAARGOS_1219 1 4570957 41.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/745/GCA_016889745.1_ASM1688974v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae PRJNA231221 47678 SAMN16357361 ASM1688974v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.496 USA:MD missing Pacbio; Illumina US Food and Drug Administration 1311.2x 99.99 99.22 0.08 99.95 0.53 GCF_016889745.1 3671 3770 3770 13 15 70 1 Bacteroides_caccae_homd_HMT_967 GCA_016889765.1 HMT-053 FDAARGOS_1196 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-053 Corynebacterium minutissimum FDAARGOS_1196 1 2725312 59.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/765/GCA_016889765.1_ASM1688976v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium minutissimum_B PRJNA231221 38301 SAMN16357338 ASM1688976v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.080 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1635.5x 93.61 99.78 0.15 99.99 0.17 GCF_016889765.1 2551 2624 2624 8 12 51 2 Corynebacterium_minutissimum_homd_HMT_053 GCA_016889885.1 HMT-576 FDAARGOS_1208 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus FDAARGOS_1208 1 1978680 38.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/885/GCA_016889885.1_ASM1688988v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA231221 76860 SAMN16357350 ASM1688988v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.286 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1928.7x 99.99 99.26 0 99.97 0.43 GCF_016889885.1 1968 2079 2079 38 12 60 1 Streptococcus_constellatus_homd_HMT_576 GCA_016889985.1 HMT-053 FDAARGOS_1242 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-053 Corynebacterium minutissimum FDAARGOS_1242 2 2774993 59.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/985/GCA_016889985.1_ASM1688998v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium minutissimum_B PRJNA231221 2778078 SAMN16357384 ASM1688998v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.926 USA:MD missing Pacbio; Illumina US Food and Drug Administration 2028.6x 99.78 0.46 99.97 1.52 GCF_016889985.1 2571 2643 2643 7 12 51 2 Corynebacterium_minutissimum_homd_HMT_053 GCA_016894185.1 HMT-968 FDAARGOS_1235 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-968 Bacteroides ovatus FDAARGOS_1235 1 6425267 41.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/894/185/GCA_016894185.1_ASM1689418v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus PRJNA231221 28116 SAMN16357377 ASM1689418v1 Chromosome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.796 USA:MD missing Pacbio; Illumina US Food and Drug Administration 673.7x 99.99 99.46 0.12 99.95 0.52 GCF_016894185.1 4881 4988 4988 21 15 70 1 Bacteroides_ovatus_homd_HMT_968 GCA_016894265.1 HMT-077 FDAARGOS_1198 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum FDAARGOS_1198 1 2433964 59.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/894/265/GCA_016894265.1_ASM1689426v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_D PRJNA231221 38304 SAMN16357340 ASM1689426v1 Chromosome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:12.113 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1729.1x 94.92 99.6 1.32 99.98 0.43 GCF_016894265.1 2305 2383 2383 10 12 55 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_016900855.1 HMT-598 AR-0945 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata AR-0945 94 2586963 53.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/900/855/GCA_016900855.1_ASM1690085v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJNA701003 495 SAMN17843089 ASM1690085v1 Scaffold SPAdes v. 3.14.1 2021-02-09T12:29:07.420 Unknown Illumina MiSeq Rochester Institute of Technology 214.0x 96.6 99.95 1.17 99.99 0.68 GCF_016900855.1 JAFEUH01 2508 2593 2593 26 3 55 1 Neisseria_elongata_homd_HMT_598 GCA_016901195.1 HMT-538 BIN1 Named Cultivated Oral (Abundance: Scarce) HMT-538 Pseudoramibacter alactolyticus BIN1 170 2119067 yes 52.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/901/195/GCA_016901195.1_ASM1690119v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Pseudoramibacter;s__Pseudoramibacter alactolyticus PRJNA675427 113287 SAMN16774153 ASM1690119v1 Contig MEGAHIT v. 1.2.9 2020-11-12T06:56:05.980 Italy: Rome anaerobic reactor producing medium/long chain fatty acids through the fermentati Illumina MiSeq Italian National Research Council (CNR) 131.0x 97.2 99.12 1.64 99.63 3.37 GCF_016901195.1 JADOBB01 1989 2069 2069 29 2 48 1 Pseudoramibacter_alactolyticus_homd_HMT_538 GCA_016903555.1 HMT-601 FDAARGOS_1363 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis FDAARGOS_1363 4 2509593 32.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/903/555/GCA_016903555.1_ASM1690355v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA231221 1282 SAMN16357505 ASM1690355v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:15.103 USA:MD missing Pacbio; Illumina US Food and Drug Administration 1898.2x 99.52 99.81 0.09 99.99 0.01 GCF_016903555.1 2325 2484 2484 79 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_016903575.1 HMT-601 FDAARGOS_1364 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis FDAARGOS_1364 3 2448657 32.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/903/575/GCA_016903575.1_ASM1690357v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA231221 1282 SAMN16357506 ASM1690357v1 Complete Genome SMRT v. 8.0.0, HGAP v. 4 2020-10-03T14:56:15.123 USA:MD missing Pacbio; Illumina US Food and Drug Administration 1565.0x 99.16 99.81 0.28 100 0.08 GCF_016903575.1 2228 2388 2388 80 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_016905945.1 HMT-368 BP-168 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea BP-168 156 3590735 70.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/905/945/GCA_016905945.1_ASM1690594v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA701491 321318 SAMN17884709 ASM1690594v1 Scaffold SPAdes v. 3.14 2021-02-11T20:20:07.290 USA missing Illumina HiSeq ZHEJIANG UNIVERSITY 200.0x 97.23 99.41 0.2 99.99 1.3 GCF_016905945.1 JAFFGT01 3354 3444 3444 24 6 59 1 Dietzia_cinnamea_homd_HMT_368 GCA_016907735.1 HMT-340 DSM 13657 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-340 Brevibacterium paucivorans DSM 13657 1 2410104 58.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/907/735/GCA_016907735.1_ASM1690773v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium;s__Brevibacterium paucivorans PRJNA695764 170994 SAMN17619979 ASM1690773v1 Contig HGAP v. smrtlink/8.0.0.80529, HGAP 4 (1.0) 2021-01-28T19:39:12.487 Belgium missing PacBio DOE Joint Genome Institute 400.0x 95.52 98.26 1.16 99.99 0.12 GCF_016907735.1 JAFBCP01 2191 2256 2256 6 9 49 1 Brevibacterium_paucivorans_homd_HMT_340 GCA_016907795.1 HMT-084 TAGA27 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-084 Kocuria palustris TAGA27 1 2897960 70.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/907/795/GCA_016907795.1_ASM1690779v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria palustris PRJNA695763 71999 SAMN17619998 ASM1690779v1 Contig HGAP v. smrtlink/8.0.0.80529, HGAP 4 (1.0) 2021-01-28T19:43:05.383 Hungary missing PacBio DOE Joint Genome Institute 334.0x 99.97 99.34 0 99.96 0.14 GCF_016907795.1 JAFBCR01 2507 2592 2592 27 9 48 1 Kocuria_palustris_homd_HMT_084 GCA_016939715.1 HMT-676 PM52260 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-676 Proteus mirabilis PM52260 3 4296295 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/939/715/GCA_016939715.1_ASM1693971v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus;s__Proteus mirabilis PRJNA700516 584 SAMN16933295 ASM1693971v1 Complete Genome Microbial Assembly v. 1.1 2020-11-27T05:49:07.203 Czech Republic: Nymburk sputum PacBio Sequel Charles University in Prague 250.0x 99.3 100 0 100 0.7 GCF_016939715.1 3934 4128 4128 87 22 84 1 Proteus_mirabilis_homd_HMT_676 GCA_017086425.1 HMT-076 SB1-57 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri SB1-57 4 2438595 32.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/086/425/GCA_017086425.1_ASM1708642v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri_A PRJNA703418 2813777 SAMN17981632 ASM1708642v1 Complete Genome SPAdes v. 3.12.0 2021-02-19T04:01:19.556 South Korea: Changwon human skin Illumina NovaSeq; Oxford Nanopore MinION Changwon National University 2102.0x 99.73 0 100 0.09 GCF_017086425.1 2356 2489 2489 52 19 61 1 Staphylococcus_warneri_homd_HMT_076 GCA_017132775.1 HMT-862 KCTC 3128 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-862 Bifidobacterium longum KCTC 3128 1 2403825 60.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/132/775/GCA_017132775.1_ASM1713277v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum PRJNA704186 1679 SAMN18035029 ASM1713277v1 Complete Genome PacBio SMRT Analysis v. v2.3 2021-02-23T02:22:15.980 Missing intestine of adult PacBio RSII Korea University 292.2x 99.99 100 0.81 99.95 0.65 GCF_017132775.1 1965 2067 2067 13 8 80 1 Bifidobacterium_longum_homd_HMT_862 GCA_017161225.1 HMT-667 T19 Named Cultivated Oral (Abundance: Medium) HMT-667 Treponema medium T19 1 2886632 44.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/161/225/GCA_017161225.1_ASM1716122v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema medium PRJNA434540 58231 SAMN08563942 ASM1716122v1 Complete Genome SPAdes v. 3.0.0; Newbler v. 2.0.00.20 2018-02-19T06:16:02.677 United Kingdom Dairy Farm cow with Bovine Digital Dermatitis 454; Illumina MiSeq University of Liverpool 1.0x 96.29 100 10.91 98.81 6.76 GCF_017161225.1 2487 2554 2554 7 6 53 1 Treponema_medium_homd_HMT_667 GCA_017161265.1 HMT-667 ATCC 700293 Named Cultivated Oral (Abundance: Medium) HMT-667 Treponema medium ATCC 700293 1 2721998 44.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/161/265/GCA_017161265.1_ASM1716126v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema medium PRJNA482935 58231 SAMN09721498 ASM1716126v1 Complete Genome SPAdes v. 3.0.0; Newbler v. 2.0.00.20 2018-07-26T06:57:03.100 missing oral 454; Illumina MiSeq University of Liverpool 1.0x 99.98 100 0 98.57 1.58 GCF_017161265.1 2334 2398 2398 7 6 50 1 Treponema_medium_homd_HMT_667 GCA_017167155.1 HMT-116 F6_7S_P_4 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis F6_7S_P_4 16 2451586 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/155/GCA_017167155.1_ASM1716715v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA690512 29388 SAMN17570252 ASM1716715v1 Scaffold SPAdes v. v3.11.1 2021-01-25T17:32:05.546 USA: International Space Stati International Space Station during MT-2 Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 1422.6x 98.95 99.81 0.08 99.99 0.2 GCF_017167155.1 JAFDQG01 2337 2439 2439 53 4 44 1 Staphylococcus_capitis_homd_HMT_116 GCA_017167265.1 HMT-084 F6_7S_B_1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-084 Kocuria palustris F6_7S_B_1 34 2843704 70.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/265/GCA_017167265.1_ASM1716726v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria palustris PRJNA690512 71999 SAMN17570249 ASM1716726v1 Scaffold SPAdes v. v3.11.1 2021-01-25T17:32:05.483 USA: International Space Stati International Space Station during MT-2 Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 595.7x 98.35 99.34 0 99.99 0.18 GCF_017167265.1 JAFDQD01 2500 2578 2578 24 4 49 1 Kocuria_palustris_homd_HMT_084 GCA_017167295.1 HMT-116 F6_7S_P_1 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis F6_7S_P_1 23 2502093 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/295/GCA_017167295.1_ASM1716729v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA690512 29388 SAMN17570250 ASM1716729v1 Contig SPAdes v. v3.11.1 2021-01-25T17:32:05.503 USA: International Space Stati International Space Station during MT-2 Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 716.1x 98.9 99.81 0.5 100 1.26 GCF_017167295.1 JAFDQE01 2360 2466 2466 52 10 43 1 Staphylococcus_capitis_homd_HMT_116 GCA_017167485.1 HMT-084 F6_1S_P_2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-084 Kocuria palustris F6_1S_P_2 31 2844162 70.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/485/GCA_017167485.1_ASM1716748v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria palustris PRJNA690512 71999 SAMN17570239 ASM1716748v1 Scaffold SPAdes v. v3.11.1 2021-01-25T17:32:05.273 USA: International Space Stati International Space Station during MT-2 Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 1262.8x 98.35 99.34 0 99.99 0.18 GCF_017167485.1 JAFDPT01 2501 2579 2579 24 4 49 1 Kocuria_palustris_homd_HMT_084 GCA_017167505.1 HMT-084 F5_7S_P7 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-084 Kocuria palustris F5_7S_P7 32 2844494 70.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/505/GCA_017167505.1_ASM1716750v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria palustris PRJNA690512 71999 SAMN17570237 ASM1716750v1 Scaffold SPAdes v. v3.11.1 2021-01-25T17:32:05.233 USA: International Space Stati International Space Station during MT-2 Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 897.4x 98.35 99.34 0 99.99 0.18 GCF_017167505.1 JAFDPR01 2502 2579 2579 24 3 49 1 Kocuria_palustris_homd_HMT_084 GCA_017167635.1 HMT-076 F5_7S_P4 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri F5_7S_P4 26 2558875 32.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/635/GCA_017167635.1_ASM1716763v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA690512 1292 SAMN17570232 ASM1716763v1 Contig SPAdes v. v3.11.1 2021-01-25T17:32:05.130 USA: International Space Stati International Space Station during MT-2 Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 813.7x 96.03 99.73 0 100 0.28 GCF_017167635.1 JAFDPM01 2460 2554 2554 55 5 33 1 Staphylococcus_warneri_homd_HMT_076 GCA_017167685.1 HMT-084 F5_7S_P2B Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-084 Kocuria palustris F5_7S_P2B 32 2843686 70.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/685/GCA_017167685.1_ASM1716768v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria palustris PRJNA690512 71999 SAMN17570229 ASM1716768v1 Contig SPAdes v. v3.11.1 2021-01-25T17:32:05.070 USA: International Space Stati International Space Station during MT-2 Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 1101.0x 98.36 99.34 0 99.99 0.18 GCF_017167685.1 JAFDPJ01 2499 2577 2577 24 4 49 1 Kocuria_palustris_homd_HMT_084 GCA_017167735.1 HMT-084 F5_7S_P2A Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-084 Kocuria palustris F5_7S_P2A 33 2844036 70.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/735/GCA_017167735.1_ASM1716773v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria palustris PRJNA690512 71999 SAMN17570228 ASM1716773v1 Scaffold SPAdes v. v3.11.1 2021-01-25T17:32:05.046 USA: International Space Stati International Space Station during MT-2 Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 873.9x 98.35 99.34 0 99.99 0.18 GCF_017167735.1 JAFDPI01 2503 2581 2581 24 4 49 1 Kocuria_palustris_homd_HMT_084 GCA_017167785.1 HMT-567 F5_7S_P12B Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae F5_7S_P12B 12 2636914 33.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/785/GCA_017167785.1_ASM1716778v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA690512 29380 SAMN17570224 ASM1716778v1 Contig SPAdes v. v3.11.1 2021-01-25T17:32:04.956 USA: International Space Stati International Space Station during MT-2 Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 848.1x 98.65 99.81 0 100 0 GCF_017167785.1 JAFDPE01 2514 2620 2620 65 3 37 1 Staphylococcus_caprae_homd_HMT_567 GCA_017167825.1 HMT-084 F5_7S_P11C Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-084 Kocuria palustris F5_7S_P11C 36 2843288 70.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/825/GCA_017167825.1_ASM1716782v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria palustris PRJNA690512 71999 SAMN17570222 ASM1716782v1 Scaffold SPAdes v. v3.11.1 2021-01-25T17:32:04.916 USA: International Space Stati International Space Station during MT-2 Illumina NovaSeq Jet Propulsion Laboratory, California Institute of Technology 862.8x 98.35 99.34 0 99.99 0.18 GCF_017167825.1 JAFDPC01 2500 2578 2578 24 4 49 1 Kocuria_palustris_homd_HMT_084 GCA_017170235.1 HMT-580 2017609248 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus 2017609248 21 2028928 44.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/170/235/GCA_017170235.1_ASM1717023v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA678133 200 SAMN16789033 ASM1717023v1 Contig SPAdes v. 3.14.1 2020-11-13T01:57:07.500 Australia: South Australia unknown Illumina NextSeq SA Pathology 100.0x 95.76 99.51 0.12 99.98 0.26 GCF_017170235.1 JADZGJ01 2025 2072 2072 4 2 40 1 Campylobacter_curvus_homd_HMT_580 GCA_017280035.1 HMT-604 L13 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-604 Enterococcus faecalis L13 1 2846366 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/280/035/GCA_017280035.1_ASM1728003v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis PRJNA352597 1351 SAMN18062968 ASM1728003v1 Complete Genome CLC NGS Cell v. 8.0.3 2021-02-26T08:52:11.290 Brazil: Santa Catarina Rectal swab Illumina MiSeq USP 247.0x 99.13 99.63 0 100 0.1 GCF_017280035.1 2693 2838 2838 69 12 63 1 Enterococcus_faecalis_homd_HMT_604 GCA_017298755.1 HMT-115 ATCC 13880 substr. Sm_S54_jyu2015 Named Cultivated Oral (Abundance: Scarce) HMT-115 Serratia marcescens ATCC 13880 substr. Sm_S54_jyu2015 2 5160508 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/298/755/GCA_017298755.1_ASM1729875v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia marcescens PRJEB40306 911022 SAMEA7301502 ASM1729875v1 Complete Genome PacBio RS_HGAP_Assembly.3/Gap4 v. SMRTportal 2.3.0 2020-10-28T16:06:09.343 Clone isolated from the evolution experiment described in Ketola et al. 2013 (do PacBio UNIVERSITY OF JYVASKYLA 99.94 99.8 0.15 100 0.18 GCF_017298755.1 4737 4967 4967 115 22 92 1 Serratia_marcescens_homd_HMT_115 GCA_017298855.1 HMT-115 ATCC 13880 substr. Sm_S71_jyu2015 Named Cultivated Oral (Abundance: Scarce) HMT-115 Serratia marcescens ATCC 13880 substr. Sm_S71_jyu2015 2 5160529 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/298/855/GCA_017298855.1_ASM1729885v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia marcescens PRJEB40306 911022 SAMEA7301497 ASM1729885v1 Complete Genome PacBio RS_HGAP_Assembly.3/Gap4 v. SMRTportal 2.3.0 2020-10-28T16:06:09.203 Clone isolated from the evolution experiment described in Ketola et al. 2013 (do PacBio UNIVERSITY OF JYVASKYLA 99.94 99.8 0.15 100 0.18 GCF_017298855.1 4737 4967 4967 115 22 92 1 Serratia_marcescens_homd_HMT_115 GCA_017298895.1 HMT-115 ATCC 13880 substr. Sm_S89_jyu2015 Named Cultivated Oral (Abundance: Scarce) HMT-115 Serratia marcescens ATCC 13880 substr. Sm_S89_jyu2015 2 5160509 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/298/895/GCA_017298895.1_ASM1729889v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia marcescens PRJEB40306 911022 SAMEA7301495 ASM1729889v1 Complete Genome PacBio RS_HGAP_Assembly.3/Gap4 v. SMRTportal 2.3.0 2020-10-28T16:06:09.170 Clone isolated from the evolution experiment described in Ketola et al. 2013 (do PacBio UNIVERSITY OF JYVASKYLA 99.94 99.8 0.15 100 0.18 GCF_017298895.1 4736 4966 4966 115 22 92 1 Serratia_marcescens_homd_HMT_115 GCA_017298975.1 HMT-115 ATCC 13880 substr. Sm_S65_jyu2015 Named Cultivated Oral (Abundance: Scarce) HMT-115 Serratia marcescens ATCC 13880 substr. Sm_S65_jyu2015 2 5160508 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/298/975/GCA_017298975.1_ASM1729897v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia marcescens PRJEB40306 911022 SAMEA7301491 ASM1729897v1 Complete Genome PacBio RS_HGAP_Assembly.3/Gap4 v. SMRTportal 2.3.0 2020-10-28T16:06:09.063 Clone isolated from the evolution experiment described in Ketola et al. 2013 (do PacBio UNIVERSITY OF JYVASKYLA 99.94 99.8 0.15 100 0.18 GCF_017298975.1 4737 4967 4967 115 22 92 1 Serratia_marcescens_homd_HMT_115 GCA_017299035.1 HMT-115 ATCC 13880 substr. Sm_S22_jyu2015 Named Cultivated Oral (Abundance: Scarce) HMT-115 Serratia marcescens ATCC 13880 substr. Sm_S22_jyu2015 2 5160529 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/299/035/GCA_017299035.1_ASM1729903v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia marcescens PRJEB40306 911022 SAMEA7301487 ASM1729903v1 Complete Genome PacBio RS_HGAP_Assembly.3/Gap4 v. SMRTportal 2.3.0 2020-10-28T16:06:08.953 Clone isolated from the evolution experiment described in Ketola et al. 2013 (do PacBio UNIVERSITY OF JYVASKYLA 99.94 99.8 0.15 100 0.18 GCF_017299035.1 4736 4966 4966 115 22 92 1 Serratia_marcescens_homd_HMT_115 GCA_017299275.1 HMT-115 ATCC 13880 substr. Sm_S67_jyu2015 Named Cultivated Oral (Abundance: Scarce) HMT-115 Serratia marcescens ATCC 13880 substr. Sm_S67_jyu2015 2 5160509 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/299/275/GCA_017299275.1_ASM1729927v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia marcescens PRJEB40306 911022 SAMEA7301484 ASM1729927v1 Complete Genome PacBio RS_HGAP_Assembly.3/Gap4 v. SMRTportal 2.3.0 2020-10-28T16:06:08.873 Clone isolated from the evolution experiment described in Ketola et al. 2013 (do PacBio UNIVERSITY OF JYVASKYLA 99.94 99.8 0.15 100 0.18 GCF_017299275.1 4737 4967 4967 115 22 92 1 Serratia_marcescens_homd_HMT_115 GCA_017299315.1 HMT-115 ATCC 13880 substr. Sm_S40_jyu2015 Named Cultivated Oral (Abundance: Scarce) HMT-115 Serratia marcescens ATCC 13880 substr. Sm_S40_jyu2015 2 5160489 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/299/315/GCA_017299315.1_ASM1729931v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia marcescens PRJEB40306 911022 SAMEA7301485 ASM1729931v1 Complete Genome PacBio RS_HGAP_Assembly.3/Gap4 v. SMRTportal 2.3.0 2020-10-28T16:06:08.906 Clone isolated from the evolution experiment described in Ketola et al. 2013 (do PacBio UNIVERSITY OF JYVASKYLA 99.94 99.8 0.15 100 0.18 GCF_017299315.1 4734 4964 4964 115 22 92 1 Serratia_marcescens_homd_HMT_115 GCA_017299535.1 HMT-115 ATCC 13880 substr. Sm_S9_jyu2015 Named Cultivated Oral (Abundance: Scarce) HMT-115 Serratia marcescens ATCC 13880 substr. Sm_S9_jyu2015 2 5160486 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/299/535/GCA_017299535.1_ASM1729953v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia marcescens PRJEB40306 911022 SAMEA7301481 ASM1729953v1 Complete Genome PacBio RS_HGAP_Assembly.3/Gap4 v. SMRTportal 2.3.0 2020-10-28T16:06:08.780 Clone isolated from the evolution experiment described in Ketola et al. 2013 (do PacBio UNIVERSITY OF JYVASKYLA 99.94 99.8 0.15 100 0.18 GCF_017299535.1 4735 4965 4965 115 22 92 1 Serratia_marcescens_homd_HMT_115 GCA_017301315.1 HMT-115 ATCC 13880 substr. Sm_S37_jyu2015 Named Cultivated Oral (Abundance: Scarce) HMT-115 Serratia marcescens ATCC 13880 substr. Sm_S37_jyu2015 2 5160498 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/301/315/GCA_017301315.1_ASM1730131v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia marcescens PRJEB40306 911022 SAMEA7301478 ASM1730131v1 Complete Genome PacBio RS_HGAP_Assembly.3/Gap4 v. SMRTportal 2.3.0 2020-10-28T16:06:08.720 Clone isolated from the evolution experiment described in Ketola et al. 2013 (do PacBio UNIVERSITY OF JYVASKYLA 99.94 99.8 0.15 100 0.18 GCF_017301315.1 4734 4964 4964 115 22 92 1 Serratia_marcescens_homd_HMT_115 GCA_017304535.1 HMT-037 SCN18_13_7_16_R1_B_68_91 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-037 Stenotrophomonas nitritireducens SCN18_13_7_16_R1_B_68_91 21 4001815 68.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/304/535/GCA_017304535.1_ASM1730453v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas nitritireducens PRJNA629336 83617 SAMN18061499 ASM1730453v1 Contig IDBA-UD v. 1.1.3 2021-02-25T23:59:08.196 South Africa: Capetown biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effl Illumina HiSeq Jill Banfield Lab (University of California Berkeley) 91.0x 98.58 99.47 0.61 100 0.01 GCF_017304535.1 JAFKME01 3475 3637 3637 98 1 62 1 Stenotrophomonas_nitritireducens_homd_HMT_037 GCA_017306455.1 HMT-185 SCN18_10_11_15_R2_B_70_295 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-185 Microbacterium ginsengisoli SCN18_10_11_15_R2_B_70_295 18 2902864 70.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/306/455/GCA_017306455.1_ASM1730645v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium ginsengisoli PRJNA629336 400772 SAMN18061398 ASM1730645v1 Scaffold IDBA-UD v. 1.1.3 2021-02-25T23:59:06.913 South Africa: Capetown biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effl Illumina HiSeq Jill Banfield Lab (University of California Berkeley) 295.0x 98.51 98.48 0 99.99 0.07 GCF_017306455.1 JAFKIH01 2764 2827 2827 7 2 53 1 Microbacterium_ginsengisoli_homd_HMT_185 GCA_017306515.1 HMT-185 SCN18_26_2_15_R4_P_70_222 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-185 Microbacterium ginsengisoli SCN18_26_2_15_R4_P_70_222 23 2953160 70.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/306/515/GCA_017306515.1_ASM1730651v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium ginsengisoli PRJNA629336 400772 SAMN18061397 ASM1730651v1 Scaffold IDBA-UD v. 1.1.3 2021-02-25T23:59:06.900 South Africa: Capetown planktonic fraction from bioreactor innoculated with Activated Sludge Tailings E Illumina HiSeq Jill Banfield Lab (University of California Berkeley) 222.0x 99.66 98.99 0 99.96 0.13 GCF_017306515.1 JAFKIG01 2888 2952 2952 8 3 52 1 Microbacterium_ginsengisoli_homd_HMT_185 GCA_017309675.2 HMT-971 KGMB07931 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-971 Bacteroides uniformis KGMB07931 1 4240638 46.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/309/675/GCA_017309675.2_ASM1730967v2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis PRJDB7416 2792859 SAMN16744807 ASM1730967v2 Complete Genome HGAP v. 2.3 2020-11-11T00:45:04.920 North Korea feces PacBio RSII Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology 369.0x 99.26 0.12 99.99 0.1 GCF_017309675.2 3513 3623 3623 35 12 63 0 Bacteroides_uniformis_homd_HMT_971 GCA_017315425.1 HMT-116 DSM 20325 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis DSM 20325 37 2417641 32.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/315/425/GCA_017315425.1_ASM1731542v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA702288 29388 SAMN17937446 ASM1731542v1 Contig SPAdes v. 3.13.0 2021-02-17T09:40:04.710 unknown skin Illumina MiSeq Aarhus University 229.0x 99.96 99.81 0.06 99.99 0.35 GCF_017315425.1 JAFFRL01 2345 2473 2473 56 10 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_017315645.1 HMT-127 HAA31 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis HAA31 30 2172017 31.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/315/645/GCA_017315645.1_ASM1731564v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA702288 1290 SAMN17937439 ASM1731564v1 Contig SPAdes v. 3.13.0 2021-02-17T09:40:04.557 Germany: Hamburg skin Illumina MiSeq Aarhus University 275.0x 99.11 99.38 0.57 99.96 0.01 GCF_017315645.1 JAFFRS01 2108 2227 2227 53 6 59 1 Staphylococcus_hominis_homd_HMT_127 GCA_017315685.1 HMT-116 HAF22 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis HAF22 29 2380266 32.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/315/685/GCA_017315685.1_ASM1731568v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA702288 29388 SAMN17937438 ASM1731568v1 Contig SPAdes v. 3.13.0 2021-02-17T09:40:04.543 Germany: Hamburg skin Illumina MiSeq Aarhus University 246.0x 99.94 99.81 0.06 99.99 0.24 GCF_017315685.1 JAFFRT01 2317 2441 2441 55 10 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_017347365.1 HMT-669 NIID777 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis NIID777 1 2158475 51.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/347/365/GCA_017347365.1_ASM1734736v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJDB10539 487 SAMD00246645 ASM1734736v1 Complete Genome Unicycler v. 0.4.4 2021-02-26T01:00:36.347 Japan Illumina MiSeq; ONT MinION Department of Bacteriology I, National Institute of Infectious Diseases 67.0x 97.22 99.75 0.19 99.96 0 GCF_017347365.1 1982 2084 2084 28 12 61 1 Neisseria_meningitidis_homd_HMT_669 GCA_017355005.1 HMT-120 7b Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 7b 4 2398463 32.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/355/005/GCA_017355005.1_ASM1735500v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA707584 1283 SAMN18212549 ASM1735500v1 Complete Genome Unicycler v. 2.7 2021-03-08T17:36:07.127 Japan lung Illumina MiSeq; Oxford Nanopore GridION University of Illinois 30.0x 97.14 99.39 0.76 99.99 0.11 GCF_017355005.1 2338 2500 2500 81 19 61 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_017355025.1 HMT-120 1b Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 1b 4 2390652 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/355/025/GCA_017355025.1_ASM1735502v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA707584 1283 SAMN18212548 ASM1735502v1 Complete Genome Unicycler v. 2.7 2021-03-08T17:36:07.110 Japan lung Illumina MiSeq; Oxford Nanopore GridION University of Illinois 30.0x 97.14 99.39 0.08 99.99 0.09 GCF_017355025.1 2324 2485 2485 80 19 61 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_017355045.1 HMT-120 12b Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 12b 3 2382565 32.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/355/045/GCA_017355045.1_ASM1735504v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA707584 1283 SAMN18212550 ASM1735504v1 Complete Genome Unicycler v. 2.7 2021-03-08T17:36:07.140 Japan lung Illumina MiSeq; Oxford Nanopore GridION University of Illinois 36.0x 97.14 99.39 0.08 99.99 0.09 GCF_017355045.1 2318 2480 2480 80 19 62 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_017426725.1 HMT-820 A2931 Named Cultivated Oral (Abundance: Scarce) HMT-820 Prevotella illustrans A2931 139 3088950 47.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/426/725/GCA_017426725.1_ASM1742672v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella illustrans PRJNA689054 2800387 SAMN17198783 ASM1742672v1 Scaffold SPAdes v. 3.13.0 2021-01-01T17:33:04.530 Germany Illumina NextSeq Tuebingen University Hospital 136.0x 99.32 0.51 99.32 0.14 GCF_017426725.1 JAERMS01 2511 2571 2571 6 4 49 1 Prevotella_illustrans_homd_HMT_820 GCA_017504145.1 HMT-963 ATCC BAA-835 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-963 Akkermansia muciniphila ATCC BAA-835 1 2664051 55.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/504/145/GCA_017504145.1_ASM1750414v1 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila PRJDB7416 349741 SAMN00138213 ASM1750414v1 Complete Genome HGAP v. 3.0 2010-11-23T10:48:01.957 PacBio RSII Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology 356.0x 99.99 97.96 0 100 0.25 GCF_017504145.1 2183 2253 2253 6 9 54 1 Akkermansia_muciniphila_homd_HMT_963 GCA_017565765.1 HMT-332 Marseille-Q4570 Named NVP Cultivated Oral (Abundance: Medium) HMT-332 Capnocytophaga bilenii Marseille-Q4570 20 2730939 38.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/565/765/GCA_017565765.1_ASM1756576v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga bilenii PRJNA714882 2819369 SAMN18319855 ASM1756576v1 Scaffold SPAdes v. 14.3 2021-03-16T11:01:05.453 France: Marseille dental plaque Illumina; Oxford Nanopore GridION IHU - MI 31.0x 99.52 0.71 99.93 0.07 GCF_017565765.1 JAGDYP01 2485 2542 2542 6 8 42 1 Capnocytophaga_bilenii_homd_HMT_332 GCA_017565785.1 HMT-441 Marseille-Q4761 Unnamed Cultivated Oral (Abundance: Low) HMT-441 Lachnoanaerobaculum sp. HMT-441 Marseille-Q4761 12 3419874 35.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/565/785/GCA_017565785.1_ASM1756578v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum sp000209465 PRJNA714887 2819511 SAMN18319872 ASM1756578v1 Scaffold SPAdes v. 14.3 2021-03-16T11:14:03.886 France: Marseille dental plaque Illumina; Oxford Nanopore GridION IHU - MI 31.9x 96.2 0 96.51 0.2 GCF_017565785.1 JAGEKB01 3100 3182 3182 21 10 50 1 Lachnoanaerobaculum_sp_HMT_441_homd_HMT_441 GCA_017569245.1 HMT-734 BVJ1JL Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae BVJ1JL 1 2134668 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/569/245/GCA_017569245.1_ASM1756924v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA695191 1313 SAMN17602804 ASM1756924v1 Complete Genome Unicycler v. 0.4.9b 2021-01-27T10:26:08.077 Malawi nasopharynx PacBio RS;Illumina HiSeq UCL 573.0x 99.49 99.54 0.21 100 0.07 GCF_017569245.1 2118 2263 2263 74 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_017570505.1 HMT-963 KGMB01990 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-963 Akkermansia muciniphila KGMB01990 1 2844062 55.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/570/505/GCA_017570505.1_ASM1757050v1 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila PRJDB7416 239935 SAMN18309826 ASM1757050v1 Complete Genome HGAP v. 3 2021-03-15T02:22:07.519 South Korea:Gyeonggi-do, Seong PacBio RSII Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology 344.0x 97.63 97.96 0 100 0.23 GCF_017570505.1 2363 2432 2432 5 9 54 1 Akkermansia_muciniphila_homd_HMT_963 GCA_017598955.1 HMT-197 28R2A-13 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-197 Kocuria rhizophila 28R2A-13 31 2414908 70.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/598/955/GCA_017598955.1_28R2A-13 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria rhizophila PRJNA716288 72000 SAMN18417780 28R2A-13 Contig Unicycler v. 3.14.1 2021-03-22T13:59:05.190 Atlantic Ocean Illumina MiSeq; Nanopore MinION University of Bristol 370.0x 97.68 92.76 0 87.25 0.08 GCF_017598955.1 JAGFVR01 2073 2146 2146 16 6 50 1 Kocuria_rhizophila_homd_HMT_197 GCA_017638885.1 HMT-615 HL20 Named Cultivated Vaginal (Abundance: High) HMT-615 Lactobacillus gasseri HL20 3 1989082 35.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/638/885/GCA_017638885.1_ASM1763888v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus gasseri PRJNA712290 1596 SAMN18236559 ASM1763888v1 Complete Genome SPAdes v. 3.14.0 2021-03-10T00:57:05.206 South Korea stool Oxford Nanopore; Illumina MiSeq Hallym University 1031.0x 99.83 99.22 0.78 99.98 0.11 GCF_017638885.1 1890 2022 2022 33 18 80 1 Lactobacillus_gasseri_homd_HMT_615 GCA_017654245.1 HMT-115 ATCC 13880 Named Cultivated Oral (Abundance: Scarce) HMT-115 Serratia marcescens ATCC 13880 1 5140264 59.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/654/245/GCA_017654245.1_ASM1765424v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia;s__Serratia marcescens PRJNA716961 911022 SAMN18473280 ASM1765424v1 Complete Genome HGAP v. Nov-2017 2021-03-24T14:10:09.606 not collected PacBio Massachusetts General Hospital 313.0x 99.94 99.68 0.15 100 0.17 GCF_017654245.1 4721 4953 4953 115 22 94 1 Serratia_marcescens_homd_HMT_115 GCA_017655645.1 HMT-813 KPL3256 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3256 1 1941401 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/645/GCA_017655645.1_ASM1765564v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664203 ASM1765564v1 Chromosome HGAP v. 4.0 2019-05-16T19:11:04.447 USA: MA nostril PacBio Sequel Forsyth Institute 530.0x 97.64 99.44 1.9 98.44 0.56 GCF_017655645.1 1800 1933 1933 66 12 54 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655665.1 HMT-813 KPL3250 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3250 1 1904333 39.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/665/GCA_017655665.1_ASM1765566v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664202 ASM1765566v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.433 USA: MA nostril PacBio Sequel Forsyth Institute 501.0x 97.77 99.28 2.45 99.29 0.48 GCF_017655665.1 1714 1852 1852 71 12 54 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655685.1 HMT-813 KPL3090 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3090 1 2009643 39.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/685/GCA_017655685.1_ASM1765568v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664200 ASM1765568v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.400 USA: MA nostril PacBio Sequel Forsyth Institute 423.0x 97.57 99.46 2.99 98.86 0.96 GCF_017655685.1 1891 2042 2042 82 12 56 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655705.1 HMT-813 KPL3264 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3264 1 1984755 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/705/GCA_017655705.1_ASM1765570v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664204 ASM1765570v1 Chromosome HGAP v. 4.0 2019-05-16T19:11:04.467 USA: MA nostril PacBio Sequel Forsyth Institute 342.0x 97.47 99.46 1.9 99.83 0.26 GCF_017655705.1 1811 1941 1941 64 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655725.1 HMT-813 KPL3086 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3086 1 1864691 39.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/725/GCA_017655725.1_ASM1765572v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664199 ASM1765572v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.383 USA: MA nostril PacBio Sequel Forsyth Institute 342.0x 97.57 98.1 1.9 98.88 0.4 GCF_017655725.1 1706 1840 1840 68 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655745.1 HMT-813 KPL3084 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3084 1 1906822 39.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/745/GCA_017655745.1_ASM1765574v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664198 ASM1765574v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.367 USA: MA nostril PacBio Sequel Forsyth Institute 433.0x 97.6 99.18 1.9 99.49 0.41 GCF_017655745.1 1757 1871 1871 47 12 54 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655765.1 HMT-813 KPL3077 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3077 1 1957024 39.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/765/GCA_017655765.1_ASM1765576v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664197 ASM1765576v1 Chromosome HGAP v. 4.0 2019-05-16T19:11:04.347 USA: MA nostril PacBio Sequel Forsyth Institute 351.0x 97.64 99.46 2.72 99.13 0.54 GCF_017655765.1 1837 1941 1941 38 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655785.1 HMT-813 KPL3070 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3070 1 1883862 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/785/GCA_017655785.1_ASM1765578v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664196 ASM1765578v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.330 USA: MA nostril PacBio Sequel Forsyth Institute 271.0x 97.58 99.18 1.9 99.62 0.35 GCF_017655785.1 1738 1849 1849 45 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655805.1 HMT-813 KPL3246 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3246 1 1946134 39.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/805/GCA_017655805.1_ASM1765580v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664201 ASM1765580v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.417 USA: MA nostril PacBio Sequel Forsyth Institute 578.0x 97.62 99.39 1.9 99.61 0.45 GCF_017655805.1 1720 1837 1837 50 12 54 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655825.1 HMT-813 KPL3069 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3069 1 1977296 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/825/GCA_017655825.1_ASM1765582v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664195 ASM1765582v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.313 USA: MA nostril PacBio Sequel Forsyth Institute 372.0x 97.58 99.18 2.45 99.38 0.48 GCF_017655825.1 1870 1985 1985 49 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655845.1 HMT-813 KPL3065 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3065 1 1878426 39.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/845/GCA_017655845.1_ASM1765584v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664194 ASM1765584v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.297 USA: MA nostril PacBio Sequel Forsyth Institute 460.0x 97.59 98.91 1.9 98.87 0.4 GCF_017655845.1 1694 1831 1831 71 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655865.1 HMT-813 KPL3052 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3052 1 2001464 39.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/865/GCA_017655865.1_ASM1765586v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664193 ASM1765586v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.283 USA: MA nostril PacBio Sequel Forsyth Institute 382.0x 97.67 99.46 1.9 98.5 0.34 GCF_017655865.1 1820 1950 1950 64 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655885.1 HMT-813 KPL3050 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3050 1 2043806 39.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/885/GCA_017655885.1_ASM1765588v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664192 ASM1765588v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.267 USA: MA nostril PacBio Sequel Forsyth Institute 475.0x 97.47 99.46 2.45 99.2 0.26 GCF_017655885.1 1840 1999 1999 93 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655905.1 HMT-813 KPL3043 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3043 1 1885610 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/905/GCA_017655905.1_ASM1765590v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664191 ASM1765590v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.253 USA: MA nostril PacBio Sequel Forsyth Institute 582.0x 97.56 99.18 1.9 99.6 0.33 GCF_017655905.1 1714 1866 1866 86 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655925.1 HMT-813 KPL3033 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3033 1 1958196 39.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/925/GCA_017655925.1_ASM1765592v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664190 ASM1765592v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.230 USA: MA nostril PacBio Sequel Forsyth Institute 498.0x 97.61 99.46 2.45 99.76 0.41 GCF_017655925.1 1801 1915 1915 48 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655945.1 HMT-813 KPL3274 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3274 1 1875895 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/945/GCA_017655945.1_ASM1765594v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664205 ASM1765594v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.483 USA: MA nostril PacBio Sequel Forsyth Institute 574.0x 97.52 99.46 1.9 98.97 0.37 GCF_017655945.1 1684 1780 1780 30 12 53 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017655965.1 HMT-813 KPL3911 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum KPL3911 1 1900145 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/965/GCA_017655965.1_ASM1765596v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJNA379818 29394 SAMN11664206 ASM1765596v1 Complete Genome HGAP v. 4.0 2019-05-16T19:11:04.497 USA: MA nostril PacBio Sequel Forsyth Institute 595.0x 97.57 99.18 1.9 98.87 0.32 GCF_017655965.1 1772 1892 1892 53 12 54 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_017723815.1 HMT-197 28R2A-20 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-197 Kocuria rhizophila 28R2A-20 1 2652363 70.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/723/815/GCA_017723815.1_ASM1772381v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria rhizophila PRJNA716289 72000 SAMN18418057 ASM1772381v1 Chromosome Unicycler v. 3.14.1 2021-03-22T14:03:04.517 Atlantic Ocean Illumina MiSeq; Nanopore MinION University of Bristol 1091.0x 97.71 99.34 0 99.99 0.07 GCF_017723815.1 2285 2364 2364 16 9 53 1 Kocuria_rhizophila_homd_HMT_197 GCA_017726655.1 HMT-485 6N2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-485 Agrobacterium tumefaciens 6N2 2 5082709 58.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/726/655/GCA_017726655.1_ASM1772665v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium;s__Agrobacterium tumefaciens_B PRJNA677994 358 SAMN16786093 ASM1772665v1 Complete Genome HGAP v. 3.0 2020-11-12T16:37:06.323 Argentina: Tucuman Tucuman, Argentina PacBio PROIMI - CONICET 63.1x 85.34 99.72 0.02 100 0.09 GCF_017726655.1 4811 4929 4929 49 12 56 1 Agrobacterium_tumefaciens_homd_HMT_485 GCA_017743195.1 HMT-588 N8 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-588 Bifidobacterium dentium N8 1 2535489 58.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/743/195/GCA_017743195.1_ASM1774319v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium PRJNA718011 1689 SAMN18520778 ASM1774319v1 Complete Genome Unicycler v. 0.4.4 2021-03-28T05:42:05.726 China:Harbin Feces of healthy 12 day male infants PacBio Sequel Northeast Agricultural University 1000.0x 98.92 100 0.45 99.91 0.3 GCF_017743195.1 2055 2131 2131 9 9 57 1 Bifidobacterium_dentium_homd_HMT_588 GCA_017743215.1 HMT-588 E7 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-588 Bifidobacterium dentium E7 1 2552511 58.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/743/215/GCA_017743215.1_ASM1774321v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium PRJNA718012 1689 SAMN18520779 ASM1774321v1 Complete Genome Unicycler v. 0.4.4 2021-03-28T05:50:04.883 China:Harbin Feces of healthy 3-month-old male infants PacBio Sequel Northeast Agricultural University 1000.0x 98.94 100 0.45 99.97 0.72 GCF_017743215.1 2050 2127 2127 9 9 58 1 Bifidobacterium_dentium_homd_HMT_588 GCA_017753665.1 HMT-609 NS20201025 Named Cultivated Oral (Abundance: Medium) HMT-609 Neisseria flava NS20201025 1 2566407 51.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/753/665/GCA_017753665.1_ASM1775366v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flava PRJNA714501 490 SAMN18451419 ASM1775366v1 Complete Genome SPAdes v. 3.9.1 2021-03-24T03:39:06.120 China:Hangzhou PacBio First Affiliated Hospital, School of Medicine, Zhejiang University 200.0x 94.66 99.39 0 100 0.07 GCF_017753665.1 2277 2367 2367 15 12 62 1 Neisseria_flava_homd_HMT_609 GCA_017792125.1 HMT-544 EEELCW01 Named Cultivated Pathogen (Abundance: Scarce) HMT-544 Brucella anthropi EEELCW01 2 4714242 55.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/792/125/GCA_017792125.1_ASM1779212v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Brucella;s__Brucella anthropi PRJNA598921 2696486 SAMN13734865 ASM1779212v1 Complete Genome Unicycler v. v0.4.8-beta 2020-01-04T02:56:13.147 China:Changsha missing Illumina HiSeq Central South University 200.0x 100 0 99.98 0.62 GCF_017792125.1 4458 4582 4582 52 12 59 1 Brucella_anthropi_homd_HMT_544 GCA_017798005.1 HMT-458 2125159857 Unnamed Cultivated Oral (Abundance: Medium) HMT-458 Aggregatibacter sp. HMT-458 2125159857 1 1999512 43.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/798/005/GCA_017798005.1_ASM1779800v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter sp000466335 PRJNA716419 2820817 SAMN18435607 ASM1779800v1 Complete Genome Unicycler v. v0.4.9b 2021-03-22T22:39:06.273 Australia Blood culture Illumina NextSeq; Oxford Nanopore GridION Queensland Health Forensic and Scientific Services 183.0x 99.66 0.45 100 0.04 GCF_017798005.1 1851 1954 1954 30 17 55 1 Aggregatibacter_sp_HMT_458_homd_HMT_458 GCA_017821195.2 HMT-804 DRC3 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-804 Lactococcus lactis DRC3 7 2641059 35.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/821/195/GCA_017821195.2_ASM1782119v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis PRJNA673343 1360 SAMN16604567 ASM1782119v2 Complete Genome Unicycler v. 0.5.0 2020-10-30T08:09:04.467 Australia Dairy Illumina MiSeq; PacBio Sequel University College Cork 226.0x 98.82 100 1.13 100 1.14 GCF_017821195.2 2652 2781 2781 47 19 62 1 Lactococcus_lactis_homd_HMT_804 GCA_017850055.1 HMT-019 BBMGS-S02-097 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens BBMGS-S02-097 161 2278072 59.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/850/055/GCA_017850055.1_ASM1785005v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA692334 38284 SAMN17614116 ASM1785005v1 Contig SPAdes v. v3.14.0 2021-01-28T05:26:07.407 Japan skin of face; 1 single-cell amplified by MDA combined with human skin metagenome Illumina HiSeq bioBiome, Inc. 52.0x 97.02 92.57 0.66 90.94 0.12 GCF_017850055.1 JAFIJE01 2115 2170 2170 7 4 43 1 Corynebacterium_accolens_homd_HMT_019 GCA_017874535.1 HMT-792 DSM 101193 Named Cultivated Skin (Abundance: Medium) HMT-792 Anaerococcus nagyae DSM 101193 16 1751430 30.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/874/535/GCA_017874535.1_ASM1787453v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus nagyae PRJNA709606 1755241 SAMN18247816 ASM1787453v1 Contig SPAdes v. 3.14.1 2021-03-10T16:54:40.360 missing missing Illumina DOE Joint Genome Institute 478.0x 98.78 0.81 99.25 1 GCF_017874535.1 JAGGLS01 1623 1698 1698 24 4 46 1 Anaerococcus_nagyae_homd_HMT_792 GCA_017893945.1 HMT-724 ATCC 700773 Named Cultivated Oral (Abundance: Scarce) HMT-724 Treponema parvum ATCC 700773 1 2626237 44.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/893/945/GCA_017893945.1_ASM1789394v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D parvum_A PRJNA284866 138851 SAMN15042356 ASM1789394v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2020-05-28T00:36:36.220 China dental plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 1088.0x 94.45 100 0 94.03 0.57 GCF_017893945.1 2280 2338 2338 3 6 48 1 Treponema_parvum_homd_HMT_724 GCA_017893965.1 HMT-724 ATCC 700770 Named Cultivated Oral (Abundance: Scarce) HMT-724 Treponema parvum ATCC 700770 1 2658287 43.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/893/965/GCA_017893965.1_ASM1789396v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D parvum PRJNA284866 138851 SAMN15062831 ASM1789396v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2020-05-30T05:32:04.143 missing dental plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 921.0x 100 0 97.8 1.04 GCF_017893965.1 2290 2348 2348 4 6 47 1 Treponema_parvum_homd_HMT_724 GCA_017893985.1 HMT-724 OMZ 843 Named Cultivated Oral (Abundance: Scarce) HMT-724 Treponema parvum OMZ 843 1 2609480 44.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/893/985/GCA_017893985.1_ASM1789398v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D parvum_A PRJNA284866 138851 SAMN15391246 ASM1789398v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2020-06-27T08:57:05.680 China dental plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 1268.0x 94.36 98.6 0 94.85 0.21 GCF_017893985.1 2306 2363 2363 3 6 47 1 Treponema_parvum_homd_HMT_724 GCA_017898045.1 HMT-076 MBF02_19J Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri MBF02_19J 12 2521958 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/898/045/GCA_017898045.1_ASM1789804v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA720085 1292 SAMN18632331 ASM1789804v1 Contig de novo assembly Flye v. 2.8.1 2021-04-06T10:53:04.130 Indonesia:Depok skin Oxford Nanopore GridION UI 275.0x 99.92 99.73 0.06 100 0.54 GCF_017898045.1 JAGMUP01 2393 2528 2528 53 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_018094625.1 HMT-839 ATCC 25258 Named Cultivated Vaginal (Abundance: High) HMT-839 Lactobacillus jensenii ATCC 25258 44 1616878 34.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/094/625/GCA_018094625.1_ASM1809462v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus jensenii PRJNA589373 109790 SAMN13281619 ASM1809462v1 Contig SPAdes v. 3.13.0 2019-11-13T22:12:02.540 missing human vaginal discharge Illumina MiSeq Albert Einstein College of Medicine 104.0x 99.99 98.83 0 99.94 0.1 GCF_018094625.1 WKKD01 1480 1542 1542 18 3 40 1 Lactobacillus_jensenii_homd_HMT_839 GCA_018127705.1 HMT-349 PM007 Phylotype Uncultivated Oral (Abundance: Medium) HMT-349 Saccharimonas sp. HMT-349 PM007 1 1021750 46.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/705/GCA_018127705.1_ASM1812770v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp018127705 PRJNA282954 713051 SAMN18352202 ASM1812770v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.827 USA: Cambridge, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 262.0x 65.74 1.85 98.26 2.23 1010 1064 1064 5 3 46 0 Saccharimonas_sp_HMT_349_homd_HMT_349 GCA_018127725.1 HMT-948 CCUG 66490 Named Cultivated Oral (Abundance: Scarce) HMT-948 Streptococcus lactarius CCUG 66490 1 2144372 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/725/GCA_018127725.1_ASM1812772v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus lactarius PRJNA282954 684066 SAMN18352172 ASM1812772v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.393 Spain human breast milk PacBio Sequel The Forsyth Institute 354.0x 99.91 99.15 1.1 99.99 0.03 GCF_018127725.1 1991 2123 2123 57 12 62 1 Streptococcus_lactarius_homd_HMT_948 GCA_018127745.1 HMT-275 W7780 Unnamed Cultivated Oral (Abundance: Scarce) HMT-275 Porphyromonas sp. HMT-275 W7780 1 2180921 60.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/745/GCA_018127745.1_ASM1812774v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas sp018127745 PRJNA282954 712435 SAMN18352206 ASM1812774v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.887 Finland:Helsinki human oral cavity PacBio Sequel The Forsyth Institute 242.0x 97.08 0.47 99.33 0.15 GCF_018127745.1 1680 1748 1748 8 9 50 1 Porphyromonas_sp_HMT_275_homd_HMT_275 GCA_018127765.1 HMT-572 F0319 Named Cultivated Oral (Abundance: Medium) HMT-572 Prevotella veroralis F0319 3 2990547 41.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/765/GCA_018127765.1_ASM1812776v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella veroralis PRJNA282954 28137 SAMN18352189 ASM1812776v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.630 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 377.0x 96.85 99.32 0 99.97 0.04 GCF_018127765.1 2491 2565 2565 9 12 52 1 Prevotella_veroralis_homd_HMT_572 GCA_018127785.1 HMT-885 W2052 Named Cultivated Oral (Abundance: Medium) HMT-885 Prevotella scopos W2052 3 3304345 40.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/785/GCA_018127785.1_ASM1812778v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella scopos PRJNA282954 1236518 SAMN18352205 ASM1812778v1 Complete Genome Flye v. 2.8 2021-03-18T16:33:06.873 United Kingdom: Cardiff human oral cavity PacBio Sequel The Forsyth Institute 319.0x 99.97 99.32 0.17 99.88 0.16 GCF_018127785.1 2648 2725 2725 14 12 50 1 Prevotella_scopos_homd_HMT_885 GCA_018127805.1 HMT-475 F0059 Unnamed Cultivated Oral (Abundance: Scarce) HMT-475 Hoylesella sp. HMT-475 F0059 1 2560308 50.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/805/GCA_018127805.1_ASM1812780v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp018127805 PRJNA282954 712471 SAMN18352175 ASM1812780v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.440 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 563.0x 98.81 0 99.38 0 GCF_018127805.1 2054 2124 2124 5 12 52 1 GCA_018127825.1 HMT-693 F0109 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens F0109 3 2887107 42.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/825/GCA_018127825.1_ASM1812782v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA282954 28133 SAMN18352181 ASM1812782v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.520 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 546.0x 98.23 99.65 0 99.86 0.1 GCF_018127825.1 2476 2545 2545 8 12 48 1 Prevotella_nigrescens_homd_HMT_693 GCA_018127845.1 HMT-693 F0630 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens F0630 2 2928207 42.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/845/GCA_018127845.1_ASM1812784v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA282954 28133 SAMN18352192 ASM1812784v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.670 USA: Cambridge, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 168.0x 97.97 99.31 0 99.97 0.95 GCF_018127845.1 2526 2594 2594 7 12 48 1 Prevotella_nigrescens_homd_HMT_693 GCA_018127865.1 HMT-693 F0103 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens F0103 3 3069220 42.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/865/GCA_018127865.1_ASM1812786v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA282954 702439 SAMN18352178 ASM1812786v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.480 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 561.0x 98.1 99.31 0 99.96 0.29 GCF_018127865.1 2720 2790 2790 7 14 48 1 Prevotella_nigrescens_homd_HMT_693 GCA_018127885.1 HMT-469 F0695 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica F0695 2 3168321 40.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/885/GCA_018127885.1_ASM1812788v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA282954 28132 SAMN18352194 ASM1812788v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.697 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 393.0x 96.31 99.32 0 99.94 0.01 GCF_018127885.1 2514 2588 2588 10 12 51 1 Prevotella_melaninogenica_homd_HMT_469 GCA_018127905.1 HMT-469 F0692 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica F0692 2 3169665 40.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/905/GCA_018127905.1_ASM1812790v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA282954 28132 SAMN18352193 ASM1812790v1 Complete Genome Flye v. 2.8 2021-03-18T16:33:06.683 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 131.0x 96.31 98.65 0 99.93 0.01 GCF_018127905.1 2557 2631 2631 10 12 51 1 Prevotella_melaninogenica_homd_HMT_469 GCA_018127925.1 HMT-469 F0516 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica F0516 2 3360806 41.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/925/GCA_018127925.1_ASM1812792v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_C PRJNA282954 28132 SAMN18352191 ASM1812792v1 Complete Genome Flye v. 2.8 2021-03-18T16:33:06.660 USA: Boston, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 142.0x 95.01 99.32 0 99.96 0.01 GCF_018127925.1 2716 2793 2793 13 13 50 1 Prevotella_melaninogenica_homd_HMT_469 GCA_018127945.1 HMT-469 F0300 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica F0300 3 3334355 40.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/945/GCA_018127945.1_ASM1812794v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_B PRJNA282954 28132 SAMN18352187 ASM1812794v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.603 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 288.0x 95.18 99.32 0.17 99.98 0.06 GCF_018127945.1 2747 2827 2827 14 12 53 1 Prevotella_melaninogenica_homd_HMT_469 GCA_018127965.1 HMT-469 F0301 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica F0301 2 3218481 40.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/965/GCA_018127965.1_ASM1812796v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_B PRJNA282954 28132 SAMN18352188 ASM1812796v1 Complete Genome Flye v. 2.8 2021-03-18T16:33:06.617 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 125.0x 95.15 99.16 0 99.95 0.34 GCF_018127965.1 2611 2687 2687 13 12 50 1 Prevotella_melaninogenica_homd_HMT_469 GCA_018127985.1 HMT-685 F0096 Named Cultivated Oral (Abundance: Low) HMT-685 Prevotella multiformis F0096 2 3025491 51.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/985/GCA_018127985.1_ASM1812798v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella multiformis PRJNA282954 282402 SAMN18352177 ASM1812798v1 Complete Genome Flye v. 2.8 2021-03-18T16:33:06.467 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 128.0x 97.93 99.32 0 99.18 0.12 GCF_018127985.1 2412 2485 2485 9 12 51 1 Prevotella_multiformis_homd_HMT_685 GCA_018128005.1 HMT-469 F0299 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica F0299 3 3619436 41.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/005/GCA_018128005.1_ASM1812800v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_B PRJNA282954 28132 SAMN18352186 ASM1812800v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.590 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 269.0x 95.07 99.32 0.08 99.98 0.23 GCF_018128005.1 2981 3060 3060 14 13 51 1 Prevotella_melaninogenica_homd_HMT_469 GCA_018128045.1 HMT-314 F0054 Unnamed Cultivated Oral (Abundance: Medium) HMT-314 Prevotella sp. HMT-314 F0054 2 3358299 41.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/045/GCA_018128045.1_ASM1812804v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp000467895 PRJNA282954 28132 SAMN18352174 ASM1812804v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.427 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 325.0x 88.29 99.32 0 99.98 0.14 GCF_018128045.1 2743 0 0 26 12 50 1 Prevotella_sp_HMT_314_homd_HMT_314 GCA_018128065.1 HMT-314 F0091 Unnamed Cultivated Oral (Abundance: Medium) HMT-314 Prevotella sp. HMT-314 F0091 2 3342898 41.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/065/GCA_018128065.1_ASM1812806v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp000467895 PRJNA282954 28132 SAMN18352176 ASM1812806v1 Complete Genome Flye v. 2.8 2021-03-18T16:33:06.453 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 120.0x 88.43 99.32 0 99.97 1.03 GCF_018128065.1 2778 0 0 24 12 50 1 Prevotella_sp_HMT_314_homd_HMT_314 GCA_018128085.1 HMT-313 F0697 Named Cultivated Oral (Abundance: High) HMT-313 Prevotella jejuni F0697 2 3944801 41.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/085/GCA_018128085.1_ASM1812808v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella jejuni PRJNA282954 1177574 SAMN18352195 ASM1812808v1 Complete Genome Flye v. 2.8 2021-03-18T16:33:06.710 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 175.0x 96.75 99.32 0 100 0.11 GCF_018128085.1 3230 3301 3301 8 12 50 1 Prevotella_jejuni_homd_HMT_313 GCA_018128105.1 HMT-313 F0106 Named Cultivated Oral (Abundance: High) HMT-313 Prevotella jejuni F0106 2 4115533 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/105/GCA_018128105.1_ASM1812810v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella jejuni PRJNA282954 1177574 SAMN18352180 ASM1812810v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.507 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 182.0x 96.63 98.99 0 100 0.74 GCF_018128105.1 3245 3319 3319 10 12 51 1 Prevotella_jejuni_homd_HMT_313 GCA_018128125.1 HMT-298 F0411 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola F0411 2 2999514 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/125/GCA_018128125.1_ASM1812812v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA282954 470565 SAMN18352190 ASM1812812v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.643 USA: Boston, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 550.0x 97.79 99.32 0 99.92 0.02 GCF_018128125.1 2449 2528 2528 13 13 52 1 Prevotella_histicola_homd_HMT_298 GCA_018128145.1 HMT-782 W1435 Named Cultivated Oral (Abundance: Low) HMT-782 Prevotella fusca W1435 2 3261788 44.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/145/GCA_018128145.1_ASM1812814v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella fusca PRJNA282954 1236517 SAMN18352204 ASM1812814v1 Complete Genome Flye v. 2.8 2021-03-18T16:33:06.857 United Kingdom: Cardiff human oral cavity PacBio Sequel The Forsyth Institute 390.0x 99.97 99.32 0 99.5 0.12 GCF_018128145.1 2753 2825 2825 8 13 50 1 Prevotella_fusca_homd_HMT_782 GCA_018128165.1 HMT-291 F0288 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola F0288 2 2938122 50.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/165/GCA_018128165.1_ASM1812816v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA282954 28129 SAMN18352185 ASM1812816v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.580 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 311.0x 98.18 99.32 0 99.93 0.37 GCF_018128165.1 2353 2425 2425 8 12 51 1 Prevotella_denticola_homd_HMT_291 GCA_018128185.1 HMT-291 F0119 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola F0119 1 3038072 49.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/185/GCA_018128185.1_ASM1812818v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA282954 28129 SAMN18352183 ASM1812818v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.547 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 569.0x 97.98 99.32 0 99.89 0.31 GCF_018128185.1 2438 2512 2512 10 12 51 1 Prevotella_denticola_homd_HMT_291 GCA_018128205.1 HMT-291 F0115 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola F0115 3 3106544 50.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/205/GCA_018128205.1_ASM1812820v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA282954 28129 SAMN18352182 ASM1812820v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.533 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 266.0x 97.99 99.32 0.11 99.95 0.59 GCF_018128205.1 2533 2607 2607 10 12 51 1 Prevotella_denticola_homd_HMT_291 GCA_018128225.1 HMT-218 F0707 Unnamed Cultivated Oral (Abundance: Medium) HMT-218 Leptotrichia sp. HMT-218 F0707 1 2172496 28.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/225/GCA_018128225.1_ASM1812822v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia sp018128225 PRJNA282954 712361 SAMN18352197 ASM1812822v1 Complete Genome Flye v. 2.8 2021-03-18T16:33:06.737 USA: Cambridge, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 208.0x 98.88 1.12 99.97 0.33 GCF_018128225.1 2028 2127 2127 39 15 44 1 Leptotrichia_sp_HMT_218_homd_HMT_218 GCA_018128245.1 HMT-221 F0705 Unnamed Cultivated Oral (Abundance: Medium) HMT-221 Leptotrichia sp. HMT-221 F0705 2 2076334 29.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/245/GCA_018128245.1_ASM1812824v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__JABCPH02;s__JABCPH02 sp013333235 PRJNA282954 712362 SAMN18352196 ASM1812824v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.723 USA: Cambridge, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 637.0x 100 1.12 99.86 0.04 GCF_018128245.1 1803 1917 1917 42 21 50 1 Leptotrichia_sp_HMT_221_homd_HMT_221 GCA_018128265.1 HMT-374 ORNL-0100 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-374 Cellulosimicrobium funkei ORNL-0100 2 4411608 74.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/265/GCA_018128265.1_ASM1812826v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium;s__Cellulosimicrobium funkei PRJNA282954 1710 SAMN18352201 ASM1812826v1 Complete Genome Flye v. 2.8 2021-03-18T16:33:06.803 USA: Oak Ridge, Tennessee human oral cavity PacBio Sequel The Forsyth Institute 107.0x 97.6 100 0.67 100 0.39 GCF_018128265.1 3944 4045 4045 25 9 66 1 Cellulosimicrobium_funkei_homd_HMT_374 GCA_018128285.1 HMT-416 W9116 Unnamed Cultivated Oral (Abundance: Scarce) HMT-416 Fannyhessea sp. HMT-416 W9116 1 3004013 55.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/285/GCA_018128285.1_ASM1812828v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__UBA7748;s__UBA7748 sp003862175 PRJNA282954 712157 SAMN18352207 ASM1812828v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.900 United Kingdom: London human oral cavity PacBio Sequel The Forsyth Institute 249.0x 98.39 0 98.24 0.71 GCF_018128285.1 3217 3291 3291 12 9 52 1 Fannyhessea_sp_HMT_416_homd_HMT_416 GCA_018128305.1 HMT-513 W11186 Unnamed Cultivated Oral (Abundance: Low) HMT-513 Aggregatibacter sp. HMT-513 W11186 3 1939696 42.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/305/GCA_018128305.1_ASM1812830v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_A PRJNA282954 712150 SAMN18352203 ASM1812830v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.840 United Kingdom: London human oral cavity PacBio Sequel The Forsyth Institute 300.0x 99.89 0.45 100 0.09 GCF_018128305.1 1826 1934 1934 31 19 57 1 Aggregatibacter_sp_HMT_513_homd_HMT_513 GCA_018128325.1 HMT-194 DSMZ 100122 Named Cultivated Oral (Abundance: High) HMT-194 Arachnia rubra DSMZ 100122 1 3316958 64.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/325/GCA_018128325.1_ASM1812832v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia rubra PRJNA282954 1547448 SAMN18352173 ASM1812832v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.410 Japan:Matsudo human oral cavity PacBio Sequel The Forsyth Institute 185.0x 99.99 96.95 1.22 100 0.4 GCF_018128325.1 2989 3065 3065 19 6 49 2 Arachnia_rubra_homd_HMT_194 GCA_018128345.1 HMT-739 F0231 Named Cultivated Oral (Abundance: Medium) HMT-739 Arachnia propionica F0231 1 3404402 66.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/345/GCA_018128345.1_ASM1812834v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia propionica PRJNA282954 1750 SAMN18352184 ASM1812834v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.563 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 163.0x 99.03 97.47 1.75 100 0.59 GCF_018128345.1 3012 3092 3092 21 6 52 1 Arachnia_propionica_homd_HMT_739 GCA_018128365.1 HMT-739 F0714 Named Cultivated Oral (Abundance: Medium) HMT-739 Arachnia propionica F0714 1 3448470 66.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/128/365/GCA_018128365.1_ASM1812836v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia propionica PRJNA282954 1750 SAMN18352198 ASM1812836v1 Complete Genome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.750 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 150.0x 98.99 97.47 1.22 100 0.11 GCF_018128365.1 3048 3128 3128 21 6 52 1 Arachnia_propionica_homd_HMT_739 GCA_018138085.1 HMT-477 F2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-477 Stutzerimonas stutzeri F2 2 5066586 62.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/138/085/GCA_018138085.1_ASM1813808v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;s__Stutzerimonas stutzeri_AI PRJNA721585 316 SAMN18721506 ASM1813808v1 Complete Genome HGAP v. 1.3 2021-04-13T06:08:04.513 China water PacBio Jiangnan University 120.0x 83.31 100 0.68 100 0.98 GCF_018138085.1 4604 4727 4727 48 12 62 1 Stutzerimonas_stutzeri_homd_HMT_477 GCA_018141745.1 HMT-619 LyG-2 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis LyG-2 1 2411481 48.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/141/745/GCA_018141745.1_ASM1814174v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA722847 837 SAMN18805464 ASM1814174v1 Complete Genome FALCON v. v0.3 2021-04-19T23:11:04.357 China: Luoyang healthy gingiva Illumina HiSeq; PacBio Henan University of Science and Technology Affiliated First Hospital 325.0x 98.44 99.92 0 100 0.01 GCF_018141745.1 2078 2160 2160 16 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_018141765.1 HMT-619 LyG-1 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis LyG-1 1 2411440 48.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/141/765/GCA_018141765.1_ASM1814176v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA722847 837 SAMN18805165 ASM1814176v1 Complete Genome FALCON v. v0.3 2021-04-19T22:54:04.347 China: Luoyang healthy gingiva PacBio; Illumina HiSeq Henan University of Science and Technology Affiliated First Hospital 325.0x 98.44 99.92 0 100 0.01 GCF_018141765.1 2077 2158 2158 16 12 52 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_018141805.1 HMT-619 GMU202011 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis GMU202011 1 2375739 48.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/141/805/GCA_018141805.1_ASM1814180v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA722373 837 SAMN18753385 ASM1814180v1 Complete Genome HGAP v. 4 2021-04-16T03:47:08.267 China: Guangzhou Pus PacBio Guangzhou Medical University 975.5x 98.3 99.92 0 99.99 0.03 GCF_018141805.1 1993 2073 2073 14 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_018141825.1 HMT-291 F0105 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola F0105 1 3027740 49.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/141/825/GCA_018141825.1_ASM1814182v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA282954 28129 SAMN18352179 ASM1814182v1 Chromosome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.493 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 348.0x 98.06 98.65 0 99.78 0.26 GCF_018141825.1 2494 2566 2566 14 9 48 1 Prevotella_denticola_homd_HMT_291 GCA_018141845.1 HMT-096 F0428 Unnamed Cultivated Oral (Abundance: Medium) HMT-096 Lachnospiraceae [G2] bacterium HMT-096 F0428 1 2241976 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/141/845/GCA_018141845.1_ASM1814184v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__F0428;s__F0428 sp003043955 PRJNA282954 712982 SAMN18352199 ASM1814184v1 Chromosome Pacbio MA v. 9.0.0.92188 2021-03-18T16:33:06.763 USA: Boston, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 560.0x 97.15 0.42 100 0.18 2064 2153 2153 23 14 51 1 Lachnospiraceae__G2__bacterium_HMT_096_homd_HMT_096 GCA_018205295.1 HMT-690 DD5 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum DD5 181 2645633 34.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/205/295/GCA_018205295.1_ASM1820529v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA676053 859 SAMN16729904 ASM1820529v1 Contig SPAdes v. 3.13.0 2020-11-10T19:27:04.370 Canada: Calgary Digital dermatitis lesion Illumina HiSeq University of Calgary 60.0x 99.05 100 0 100 0.37 GCF_018205295.1 JADRHJ01 2318 2389 2389 23 3 44 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_018205675.1 HMT-690 DD16 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum DD16 198 2775091 33.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/205/675/GCA_018205675.1_ASM1820567v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA676053 859 SAMN16729915 ASM1820567v1 Contig SPAdes v. 3.13.0 2020-11-10T19:27:04.550 Canada: Calgary Digital dermatitis lesion Illumina HiSeq University of Calgary 60.0x 99.2 100 0 100 0.76 GCF_018205675.1 JADRGY01 2580 2652 2652 24 2 45 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_018206015.1 HMT-787 DD22 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-787 Bacteroides pyogenes DD22 132 3347679 46.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/206/015/GCA_018206015.1_ASM1820601v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes PRJNA676053 310300 SAMN16729921 ASM1820601v1 Contig SPAdes v. 3.13.0 2020-11-10T19:27:04.657 Canada: Calgary Digital dermatitis lesion Illumina HiSeq University of Calgary 60.0x 98.83 99.25 0 99.99 0.1 GCF_018206015.1 JADRGS01 2741 2830 2830 25 3 60 1 Bacteroides_pyogenes_homd_HMT_787 GCA_018206295.1 HMT-787 DD33 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-787 Bacteroides pyogenes DD33 132 3347772 46.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/206/295/GCA_018206295.1_ASM1820629v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes PRJNA676053 310300 SAMN16729932 ASM1820629v1 Contig SPAdes v. 3.13.0 2020-11-10T19:27:04.830 Canada: Calgary Digital dermatitis lesion Illumina HiSeq University of Calgary 60.0x 98.83 99.25 0 99.99 0.1 GCF_018206295.1 JADRGH01 2740 2829 2829 25 3 60 1 Bacteroides_pyogenes_homd_HMT_787 GCA_018206505.1 HMT-690 DD37 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum DD37 35 2082099 35.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/206/505/GCA_018206505.1_ASM1820650v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA676053 143387 SAMN16729936 ASM1820650v1 Contig SPAdes v. 3.13.0 2020-11-10T19:27:04.893 Canada: Calgary Digital dermatitis lesion Illumina HiSeq University of Calgary 60.0x 98.7 100 0 100 0.04 GCF_018206505.1 JADRGD01 1932 1997 1997 17 2 45 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_018206635.1 HMT-690 DD41 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum DD41 195 2775010 33.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/206/635/GCA_018206635.1_ASM1820663v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA676053 859 SAMN16729940 ASM1820663v1 Contig SPAdes v. 3.13.0 2020-11-10T19:27:04.960 Canada: Calgary Digital dermatitis lesion Illumina HiSeq University of Calgary 60.0x 99.21 100 0 100 0.77 GCF_018206635.1 JADRFZ01 2582 2654 2654 24 2 45 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_018224585.1 HMT-737 Marseille-Q1983 Named Cultivated Oral (Abundance: Scarce) HMT-737 Neisseria polysaccharea Marseille-Q1983 118 2196582 51.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/224/585/GCA_018224585.1_ASM1822458v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria polysaccharea PRJNA724933 2830768 SAMN18865352 ASM1822458v1 Scaffold SPAdes v. 3.12.0 2021-04-25T08:36:04.367 France: Marseille Illumina MiSeq IHU Mediterranee Infection 47.9x 99.25 0.23 99.98 0.02 GCF_018224585.1 JAGTUI01 2122 2190 2190 19 3 45 1 Neisseria_polysaccharea_homd_HMT_737 GCA_018279805.1 HMT-972 APCS1/XY Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-972 Bacteroides xylanisolvens APCS1/XY 3 6470801 42.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/279/805/GCA_018279805.1_ASM1827980v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens PRJNA556867 371601 SAMN12372036 ASM1827980v1 Complete Genome SPAdes v. 3.13.1 2019-07-26T12:41:06.900 Ireland:Cork feces Illumina HiSeq,; Oxford Nanopore MinION University College Cork 43.0x 97.39 99.46 0.22 100 0.64 GCF_018279805.1 5295 5409 5409 29 15 69 1 Bacteroides_xylanisolvens_homd_HMT_972 GCA_018281725.1 HMT-282 INC8271 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-282 Acinetobacter junii INC8271 1 3530883 38.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/281/725/GCA_018281725.1_ASM1828172v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter junii PRJNA716062 40215 SAMN18393338 ASM1828172v1 Complete Genome Unicycler v. 0.4.7 2021-03-21T16:21:05.520 Mexico: Av. San Fernando 22, B blood BGISEQ Universidad Nacional Autonoma de Mexico 787.6x 98.19 100 0.04 100 0.02 GCF_018281725.1 3360 3479 3479 26 18 74 1 Acinetobacter_junii_homd_HMT_282 GCA_018289035.1 HMT-972 CL11T00C41 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-972 Bacteroides xylanisolvens CL11T00C41 4 6827031 42.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/289/035/GCA_018289035.1_ASM1828903v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens PRJNA669351 371601 SAMN16451199 ASM1828903v1 Complete Genome FALCON-Unzip v. 1.2.0 2020-10-19T11:44:40.686 USA: Boston feces PacBio Sequel Brigham & Womens Hospital 185.0x 97.53 99.46 0.33 100 1.64 GCF_018289035.1 5568 5683 5683 24 15 75 1 Bacteroides_xylanisolvens_homd_HMT_972 GCA_018289135.1 HMT-972 CL11T00C03 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-972 Bacteroides xylanisolvens CL11T00C03 4 6558523 42.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/289/135/GCA_018289135.1_ASM1828913v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens PRJNA669351 371601 SAMN16451198 ASM1828913v1 Complete Genome FALCON-Unzip v. 1.2.0 2020-10-19T11:44:40.670 USA: Boston feces PacBio Sequel Brigham & Womens Hospital 287.0x 98.82 99.46 0.08 100 0.55 GCF_018289135.1 5388 5501 5501 25 15 72 1 Bacteroides_xylanisolvens_homd_HMT_972 GCA_018289315.1 HMT-974 CL06T03C08 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-974 Parabacteroides merdae CL06T03C08 2 4799513 45.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/289/315/GCA_018289315.1_ASM1828931v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae PRJNA669351 46503 SAMN16451193 ASM1828931v1 Complete Genome FALCON-Unzip v. 1.2.0 2020-10-19T11:44:40.590 USA: Boston feces PacBio Sequel Brigham & Womens Hospital 266.0x 98.93 99.62 0.38 99.99 0.58 GCF_018289315.1 4075 4221 4221 46 18 81 1 Parabacteroides_merdae_homd_HMT_974 GCA_018289355.1 HMT-978 CL06T03C24 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-978 Phocaeicola vulgatus CL06T03C24 2 5306031 42.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/289/355/GCA_018289355.1_ASM1828935v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus PRJNA669351 821 SAMN16451191 ASM1828935v1 Complete Genome FALCON-Unzip v. 1.2.0 2020-10-19T11:44:40.553 USA: Boston feces PacBio Sequel Brigham & Womens Hospital 77.0x 99.17 99.25 0 100 0.51 GCF_018289355.1 4444 4587 4587 29 22 90 2 Phocaeicola_vulgatus_homd_HMT_978 GCA_018291825.1 HMT-970 CL06T03C18 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-970 Bacteroides thetaiotaomicron CL06T03C18 1 5830764 42.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/291/825/GCA_018291825.1_ASM1829182v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron PRJNA669351 818 SAMN16451188 ASM1829182v1 Complete Genome FALCON-Unzip v. 1.2.0 2020-10-19T11:44:40.503 USA: Boston feces PacBio Sequel Brigham & Womens Hospital 331.0x 98.17 99.35 0.08 99.93 0.31 GCF_018291825.1 4416 4522 4522 20 15 70 1 Bacteroides_thetaiotaomicron_homd_HMT_970 GCA_018292145.1 HMT-973 CL03T12C09 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-973 Parabacteroides distasonis CL03T12C09 1 5062790 45.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/292/145/GCA_018292145.1_ASM1829214v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis PRJNA669351 999416 SAMN16451183 ASM1829214v1 Complete Genome FALCON-Unzip v. 1.2.0 2020-10-19T11:44:40.413 USA: Boston feces PacBio Sequel Brigham & Womens Hospital 321.0x 98.93 99.42 0.38 100 1.48 GCF_018292145.1 4223 4356 4356 30 21 81 1 Parabacteroides_distasonis_homd_HMT_973 GCA_018292165.1 HMT-971 CL03T12C37 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-971 Bacteroides uniformis CL03T12C37 2 4920161 46.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/292/165/GCA_018292165.1_ASM1829216v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis PRJNA669351 997890 SAMN16451181 ASM1829216v1 Complete Genome FALCON-Unzip v. 1.2.0 2020-10-19T11:44:40.373 USA: Boston feces PacBio Sequel Brigham & Womens Hospital 334.0x 98.4 99.26 0.74 100 1.27 GCF_018292165.1 4134 4235 4235 26 12 63 0 Bacteroides_uniformis_homd_HMT_971 GCA_018310275.1 HMT-071 E697 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus E697 53 2013862 40.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/310/275/GCA_018310275.1_ASM1831027v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA726981 1303 SAMN18987061 ASM1831027v1 Contig SPAdes v. 3.11.1 2021-05-03T15:34:40.417 USA: Pittsburgh, PA eye Illumina NextSeq University of Mississippi Medical Center 245.0x 93.3 99.87 0.32 100 0.05 GCF_018310275.1 JAGXBX01 1932 2024 2024 49 3 39 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_018310275.1 HMT-071 E697 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus E697 53 2013862 40.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/310/275/GCA_018310275.1_ASM1831027v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA726981 1303 SAMN18987061 ASM1831027v1 Contig SPAdes v. 3.11.1 2021-05-03T15:34:40.417 USA: Pittsburgh, PA eye Illumina NextSeq University of Mississippi Medical Center 245.0x 93.3 99.87 0.32 100 0.05 GCF_018310275.1 JAGXBX01 1932 2024 2024 49 3 39 1 Streptococcus_oralis_HMT_071_398_707 GCA_018314255.1 HMT-881 ATCC 4005 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-881 Lentilactobacillus buchneri ATCC 4005 2 2537205 44.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/314/255/GCA_018314255.1_ASM1831425v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri PRJNA725342 1581 SAMN18876444 ASM1831425v1 Complete Genome FALCON v. 2.1.4 2021-04-27T01:55:06.223 not applicable tomato pulp PacBio RSII; Illumina HiSeq Research Laboratories, Ildong Pharmaceutical 367.0x 99.98 99.06 0 100 0.46 GCF_018314255.1 2414 2534 2534 40 15 64 1 Lentilactobacillus_buchneri_homd_HMT_881 GCA_018323945.1 HMT-331 JCM 2421 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis JCM 2421 1 2263046 37.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/323/945/GCA_018323945.1_ASM1832394v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJDB11476 29379 SAMD00294601 ASM1832394v1 Complete Genome Unicycler v. 0.4.9-beta 2021-04-06T01:00:52.747 not applicable Illumina MiSeq; ONT MinION RIKEN, BDR 620.0x 99.99 99.45 0 99.99 0.02 GCF_018323945.1 2161 2285 2285 44 19 60 1 Staphylococcus_auricularis_homd_HMT_331 GCA_018336815.1 HMT-667 OMZ 806 Named Cultivated Oral (Abundance: Medium) HMT-667 Treponema medium OMZ 806 1 2711688 44.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/336/815/GCA_018336815.1_ASM1833681v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema sp018336815 PRJNA602573 69710 SAMN11253842 ASM1833681v1 Complete Genome Canu v. 1.8 2019-03-26T03:32:04.760 Switzerland subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 700.0x 99.46 1.21 95.97 5.03 GCF_018336815.1 2555 2617 0 5 6 50 1 Treponema_medium_homd_HMT_667 GCA_018336855.1 HMT-282 YR7 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-282 Acinetobacter junii YR7 2 3438557 38.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/336/855/GCA_018336855.1_ASM1833685v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter junii PRJNA648772 40215 SAMN15647988 ASM1833685v1 Complete Genome flye v. 2.6 2020-07-26T21:29:03.303 China: Zhejiang feces Oxford Nanopore PromethION Zhejiang Academy of Agricultural Sciences 800.0x 97.72 100 0.41 100 0.1 GCF_018336855.1 3124 3238 3238 21 18 74 1 Acinetobacter_junii_homd_HMT_282 GCA_018363015.1 HMT-692 MN2019 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-692 Mycolicibacterium neoaurum MN2019 1 5756799 66.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/363/015/GCA_018363015.1_ASM1836301v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium neoaurum PRJNA598292 1795 SAMN18915540 ASM1836301v1 Complete Genome flye v. V2.6; racon v. V1.4.7; pilon v. V1.23; nextpolish v. V1.4.7; circlator v. V1.5.1 2021-04-28T21:47:06.526 China: Wuhan, Hubei feces Oxford Nanopore PromethION; MGI Renmin Hospital of Wuhan University 100.0x 98.42 100 2.58 100 0.39 GCF_018363015.1 5481 5565 5565 27 6 50 1 Mycolicibacterium_neoaurum_homd_HMT_692 GCA_018363095.1 HMT-568 FBL6 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-568 Lacticaseibacillus casei FBL6 1 3138294 47.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/363/095/GCA_018363095.1_ASM1836309v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus casei PRJNA727399 1582 SAMN19017040 ASM1836309v1 Complete Genome SMRT Link v. 9.0 2021-05-04T22:28:05.272 South Korea Raw milk PacBio Sequel Kyung Hee University 496.7x 95.74 99.46 1.45 99.89 0.48 GCF_018363095.1 2893 3003 3003 35 15 59 1 Lacticaseibacillus_casei_homd_HMT_568 GCA_018363635.1 HMT-181 L3_114_000G1_dasL3_114_000G1_concoct_111 Named NVP Cultivated Oral (Abundance: Medium) HMT-181 Schaalia lingnae L3_114_000G1_dasL3_114_000G1_concoct_111 70 1885997 yes 56.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/363/635/GCA_018363635.1_ASM1836363v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000308055 PRJNA698986 712121 SAMN17800997 ASM1836363v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:19.760 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.5x 98.84 0.51 98.92 0.13 GCF_018363635.1 JAGZNM01 1641 1693 1693 7 0 44 1 Schaalia_lingnae_homd_HMT_181 GCA_018363815.1 HMT-674 L3_108_103G1_dasL3_108_103G1_maxbin2.maxbin.038 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-674 Atopobium minutum L3_108_103G1_dasL3_108_103G1_maxbin2.maxbin.038 24 1648815 yes 48.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/363/815/GCA_018363815.1_ASM1836381v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium;s__Atopobium minutum PRJNA698986 1381 SAMN17800988 ASM1836381v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:19.606 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.0x 99.93 100 0 99.94 0.24 GCF_018363815.1 JAGZND01 1490 1544 1544 7 0 46 1 Atopobium_minutum_homd_HMT_674 GCA_018363925.1 HMT-375 L3_108_103G1_dasL3_108_103G1_concoct_38 Named** Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-375 Urinicoccus timonensis L3_108_103G1_dasL3_108_103G1_concoct_38 56 1604899 yes 42.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/363/925/GCA_018363925.1_ASM1836392v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Urinicoccus;s__Urinicoccus timonensis PRJNA698986 712430 SAMN17800986 ASM1836392v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:19.573 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.0x 98.93 0 98.55 0.01 JAGZNB01 1533 1609 1609 31 0 44 1 Urinicoccus_timonensis_homd_HMT_375 GCA_018364005.1 HMT-161 L3_108_031G1_dasL3_108_031G1_concoct_20 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_108_031G1_dasL3_108_031G1_concoct_20 20 2213853 yes 37.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/364/005/GCA_018364005.1_ASM1836400v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_F PRJNA698986 29466 SAMN17800979 ASM1836400v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:19.453 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 13.7x 96.58 100 2.69 100 1.05 GCF_018364005.1 JAGZMU01 2033 2106 2106 24 4 44 1 Veillonella_parvula_homd_HMT_161 GCA_018364115.1 HMT-073 L3_114_000M1_dasL3_114_000M1_concoct_45 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis L3_114_000M1_dasL3_114_000M1_concoct_45 73 1909634 yes 42.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/364/115/GCA_018364115.1_ASM1836411v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001072385 PRJNA698986 1306 SAMN17800975 ASM1836411v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:19.393 USA: Pittsburgh, Magee-Womens maternal feces Illumina NovaSeq 6000 University of California, Berkeley 0.8x 97.54 0.92 95.6 1.03 GCF_018364115.1 JAGZMQ01 1775 1833 1833 37 1 19 1 Streptococcus_australis_homd_HMT_073 GCA_018364315.1 HMT-681 L3_114_237G1_dasL3_114_237G1_maxbin2.maxbin.057 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 L3_114_237G1_dasL3_114_237G1_maxbin2.maxbin.057 33 2303946 yes 59.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/364/315/GCA_018364315.1_ASM1836431v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA698986 43675 SAMN17800963 ASM1836431v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:19.203 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 4.6x 95.22 99 0 100 0.34 GCF_018364315.1 JAGZME01 1793 1857 1857 13 2 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_018364315.1 HMT-681 L3_114_237G1_dasL3_114_237G1_maxbin2.maxbin.057 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 L3_114_237G1_dasL3_114_237G1_maxbin2.maxbin.057 33 2303946 yes 59.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/364/315/GCA_018364315.1_ASM1836431v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA698986 43675 SAMN17800963 ASM1836431v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:19.203 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 4.6x 95.22 99 0 100 0.34 GCF_018364315.1 JAGZME01 1793 1857 1857 13 2 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_018364335.1 HMT-701 L3_114_237G1_dasL3_114_237G1_concoct_73_sub Named Cultivated Oral (Abundance: High) HMT-701 Schaalia odontolytica L3_114_237G1_dasL3_114_237G1_concoct_73_sub 26 2466950 yes 65.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/364/335/GCA_018364335.1_ASM1836433v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia odontolytica_C PRJNA698986 29317 SAMN17800962 ASM1836433v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:19.190 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.2x 100 0.47 100 0.15 JAGZMD01 2067 2126 2126 8 1 49 1 Schaalia_odontolytica_homd_HMT_701 GCA_018364355.1 HMT-096 L3_114_123G1_dasL3_114_123G1_metabat.metabat.26 Unnamed Cultivated Oral (Abundance: Medium) HMT-096 Lachnospiraceae [G2] bacterium HMT-096 L3_114_123G1_dasL3_114_123G1_metabat.metabat.26 44 1926754 yes 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/364/355/GCA_018364355.1_ASM1836435v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__F0428;s__F0428 sp003043955 PRJNA698986 1898203 SAMN17800960 ASM1836435v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:19.153 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.4x 95.75 0 93.45 0.19 JAGZMB01 1787 1839 1839 13 0 38 1 Lachnospiraceae__G2__bacterium_HMT_096_homd_HMT_096 GCA_018364995.1 HMT-118 L3_131_000M1_dasL3_131_000M1_concoct_5 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus L3_131_000M1_dasL3_131_000M1_concoct_5 60 1673203 yes 45.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/364/995/GCA_018364995.1_ASM1836499v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA698986 218538 SAMN17800926 ASM1836499v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:18.603 USA: Pittsburgh, Magee-Womens maternal feces Illumina NovaSeq 6000 University of California, Berkeley 7.3x 98.38 97.47 1.27 99.88 0.12 GCF_018364995.1 JAGZKT01 1576 1654 1654 28 0 49 1 Dialister_invisus_homd_HMT_118 GCA_018365355.1 HMT-161 L3_133_000G1_dasL3_133_000G1_concoct_85 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_133_000G1_dasL3_133_000G1_concoct_85 41 2098772 yes 38.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/365/355/GCA_018365355.1_ASM1836535v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_K PRJNA698986 1926307 SAMN17800909 ASM1836535v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:18.290 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 58.5x 100 0.62 99.99 0.83 GCF_018365355.1 JAGZKC01 1930 1999 1999 24 2 42 1 Veillonella_parvula_homd_HMT_161 GCA_018365435.1 HMT-718 L3_133_000G1_dasL3_133_000G1_concoct_17 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae L3_133_000G1_dasL3_133_000G1_concoct_17 35 1983945 yes 39.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/365/435/GCA_018365435.1_ASM1836543v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AD PRJNA698986 729 SAMN17800907 ASM1836543v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:18.260 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 6.6x 95.2 99.83 0 100 0.1 JAGZKA01 1857 1929 1929 25 0 46 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_018365475.1 HMT-161 L3_132_243G1_dasL3_132_243G1_metabat.metabat.18 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_132_243G1_dasL3_132_243G1_metabat.metabat.18 16 2113375 yes 38.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/365/475/GCA_018365475.1_ASM1836547v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_D PRJNA698986 1926307 SAMN17800905 ASM1836547v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:18.230 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 176.5x 100 0 99.98 0.33 JAGZJY01 1930 1998 1998 20 4 43 1 Veillonella_parvula_homd_HMT_161 GCA_018366045.1 HMT-161 L3_128_070G1_dasL3_128_070G1_concoct_9 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_128_070G1_dasL3_128_070G1_concoct_9 12 2143512 yes 38.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/366/045/GCA_018366045.1_ASM1836604v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA698986 29466 SAMN17800875 ASM1836604v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:17.736 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 13.9x 96.39 100 0 100 0.3 GCF_018366045.1 JAGZIU01 1960 2026 2026 21 3 41 1 Veillonella_parvula_homd_HMT_161 GCA_018366215.1 HMT-161 L3_129_030G1_dasL3_129_030G1_maxbin2.maxbin.005 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_129_030G1_dasL3_129_030G1_maxbin2.maxbin.005 13 2078189 yes 38.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/366/215/GCA_018366215.1_ASM1836621v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_D PRJNA698986 1926307 SAMN17800866 ASM1836621v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:17.586 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 105.7x 100 0 100 0.2 GCF_018366215.1 JAGZIL01 1880 1958 1958 22 4 51 1 Veillonella_parvula_homd_HMT_161 GCA_018366295.1 HMT-161 L3_130_243G1_dasL3_130_243G1_concoct_45 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_130_243G1_dasL3_130_243G1_concoct_45 20 2149638 yes 38.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/366/295/GCA_018366295.1_ASM1836629v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella sp032483415 PRJNA698986 29466 SAMN17800864 ASM1836629v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:17.556 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 27.9x 96.31 100 0 99.99 0.09 GCF_018366295.1 JAGZIJ01 1943 2014 2014 24 2 44 1 Veillonella_parvula_homd_HMT_161 GCA_018366775.1 HMT-866 L3_108_000G1_dasL3_108_000G1_metabat.metabat.69 Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii L3_108_000G1_dasL3_108_000G1_metabat.metabat.69 57 1959695 yes 57.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/366/775/GCA_018366775.1_ASM1836677v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJNA698986 55565 SAMN17800840 ASM1836677v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:17.096 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.3x 98.42 1.42 98.2 1.21 JAGZHL01 1623 1682 1682 9 0 49 1 Actinomyces_graevenitzii_homd_HMT_866 GCA_018366855.1 HMT-718 L3_098_000G1_dasL3_098_000G1_concoct_179 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae L3_098_000G1_dasL3_098_000G1_concoct_179 50 1852757 yes 39.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/366/855/GCA_018366855.1_ASM1836685v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_R PRJNA698986 729 SAMN17800836 ASM1836685v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:16.986 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 3.2x 94.31 98.07 0.27 95.57 0.56 JAGZHH01 1772 1839 1839 24 4 39 0 Haemophilus_parainfluenzae_homd_HMT_718 GCA_018367315.1 HMT-626 L3_098_000G1_dasL3_098_000G1_metabat.metabat.70 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 L3_098_000G1_dasL3_098_000G1_metabat.metabat.70 112 1776416 yes 30.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/315/GCA_018367315.1_ASM1836731v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_B PRJNA698986 1379 SAMN17800812 ASM1836731v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:16.583 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.5x 93.88 97.41 0 99.72 1.02 GCF_018367315.1 JAGZGJ01 1604 1669 1669 31 2 31 1 Gemella_haemolysans_HMT_434_626 GCA_018367315.1 HMT-626 L3_098_000G1_dasL3_098_000G1_metabat.metabat.70 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 L3_098_000G1_dasL3_098_000G1_metabat.metabat.70 112 1776416 yes 30.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/315/GCA_018367315.1_ASM1836731v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_B PRJNA698986 1379 SAMN17800812 ASM1836731v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:16.583 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.5x 93.88 97.41 0 99.72 1.02 GCF_018367315.1 JAGZGJ01 1604 1669 1669 31 2 31 1 Gemella_haemolysans_clade_626_homd_HMT_626 GCA_018367555.1 HMT-122 L3_098_220G1_dasL3_098_220G1_concoct_36 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis L3_098_220G1_dasL3_098_220G1_concoct_36 22 1654445 yes 45.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/555/GCA_018367555.1_ASM1836755v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJNA698986 187326 SAMN17800801 ASM1836755v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:16.166 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 1.0x 100 0 96.45 0.1 JAGZFY01 1561 1640 1640 28 2 48 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_018367605.1 HMT-948 L3_098_121G1_dasL3_098_121G1_concoct_11_sub Named Cultivated Oral (Abundance: Scarce) HMT-948 Streptococcus lactarius L3_098_121G1_dasL3_098_121G1_concoct_11_sub 245 1840682 yes 41.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/605/GCA_018367605.1_ASM1836760v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus lactarius PRJNA698986 1318 SAMN17800798 ASM1836760v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:16.043 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 1.6x 89 94.34 1.8 93.81 0.94 JAGZFV01 1717 1776 1776 38 1 19 1 Streptococcus_lactarius_homd_HMT_948 GCA_018367615.1 HMT-411 L3_098_053G1_dasL3_098_053G1_concoct_26 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis L3_098_053G1_dasL3_098_053G1_concoct_26 109 2074480 yes 41.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/615/GCA_018367615.1_ASM1836761v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_J PRJNA698986 1318 SAMN17800797 ASM1836761v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:15.860 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 1.8x 94.19 99.26 0.86 99.81 0.29 JAGZFU01 1947 2003 2003 32 1 22 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_018367695.1 HMT-411 L3_098_011G1_dasL3_098_011G1_concoct_7 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis L3_098_011G1_dasL3_098_011G1_concoct_7 38 2093862 yes 41.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/695/GCA_018367695.1_ASM1836769v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA698986 1318 SAMN17800792 ASM1836769v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:15.660 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 1.9x 94.19 94.58 0.41 95.34 0.01 JAGZFP01 2003 2088 2088 60 1 23 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_018367995.1 HMT-161 L3_079_062G2_dasL3_079_062G2_concoct_40 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_079_062G2_dasL3_079_062G2_concoct_40 164 2136434 yes 38.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/995/GCA_018367995.1_ASM1836799v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella sp032483415 PRJNA698986 1926307 SAMN17800777 ASM1836799v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:15.300 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 16.0x 96.66 0.62 99.37 1.27 GCF_018367995.1 JAGZFA01 1907 1977 1977 21 3 45 1 Veillonella_parvula_homd_HMT_161 GCA_018369275.1 HMT-718 L3_105_085G1_dasL3_105_085G1_maxbin2.maxbin.015 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae L3_105_085G1_dasL3_105_085G1_maxbin2.maxbin.015 24 1951855 yes 39.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/369/275/GCA_018369275.1_ASM1836927v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp927911595 PRJNA698986 729 SAMN17800715 ASM1836927v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:14.113 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 11.9x 94.19 99.89 0 100 0.03 JAGZCQ01 1859 1934 1934 22 4 48 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_018369655.1 HMT-542 L3_108_000G1_dasL3_108_000G1_concoct_14 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius L3_108_000G1_dasL3_108_000G1_concoct_14 70 1983030 yes 35.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/369/655/GCA_018369655.1_ASM1836965v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA698986 1262 SAMN17800696 ASM1836965v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:13.780 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 7.3x 100 0 100 0.02 GCF_018369655.1 JAGZBX01 1819 1884 1884 39 5 20 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_018370505.1 HMT-524 L3_101_054G1_dasL3_101_054G1_maxbin2.maxbin.004 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica L3_101_054G1_dasL3_101_054G1_maxbin2.maxbin.004 60 2135535 yes 38.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/370/505/GCA_018370505.1_ASM1837050v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA698986 1926307 SAMN17800652 ASM1837050v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:12.956 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 38.3x 100 0 100 0.14 GCF_018370505.1 JAGZAF01 1953 2039 2039 20 7 58 1 Veillonella_atypica_homd_HMT_524 GCA_018370625.1 HMT-161 L3_102_034G1_dasL3_102_034G1_concoct_6 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_102_034G1_dasL3_102_034G1_concoct_6 37 2159245 yes 38.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/370/625/GCA_018370625.1_ASM1837062v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella sp032470285 PRJNA698986 1926307 SAMN17800650 ASM1837062v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:12.910 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 16.8x 100 0.71 99.76 1.31 GCF_018370625.1 JAGZAD01 1948 2013 2013 22 2 40 1 Veillonella_parvula_homd_HMT_161 GCA_018370865.1 HMT-552 L3_105_000G1_dasL3_105_000G1_concoct_85 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum L3_105_000G1_dasL3_105_000G1_concoct_85 28 2695360 yes 63.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/370/865/GCA_018370865.1_ASM1837086v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA698986 1977903 SAMN17800635 ASM1837086v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:12.620 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 32.7x 100 0 100 0.08 JAGYZO01 2400 2481 2481 27 4 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_018370905.1 HMT-524 L3_102_363G1_dasL3_102_363G1_concoct_29 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica L3_102_363G1_dasL3_102_363G1_concoct_29 153 2012662 yes 38.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/370/905/GCA_018370905.1_ASM1837090v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA698986 1926307 SAMN17800633 ASM1837090v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:12.583 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 43.6x 97.16 1.89 93.6 2.56 GCF_018370905.1 JAGYZM01 1902 1959 1959 17 2 37 1 Veillonella_atypica_homd_HMT_524 GCA_018370955.1 HMT-161 L3_102_125G1_dasL3_102_125G1_concoct_3 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_102_125G1_dasL3_102_125G1_concoct_3 52 2018166 yes 38.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/370/955/GCA_018370955.1_ASM1837095v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula PRJNA698986 29466 SAMN17800631 ASM1837095v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:12.546 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 11.2x 96.59 100 0.6 99.99 0.21 GCF_018370955.1 JAGYZK01 1824 1895 1895 22 4 44 1 Veillonella_parvula_homd_HMT_161 GCA_018371015.1 HMT-948 L3_102_091G1_dasL3_102_091G1_concoct_1 Named Cultivated Oral (Abundance: Scarce) HMT-948 Streptococcus lactarius L3_102_091G1_dasL3_102_091G1_concoct_1 131 2057466 yes 41.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/371/015/GCA_018371015.1_ASM1837101v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus lactarius PRJNA698986 1318 SAMN17800628 ASM1837101v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:12.493 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 2.0x 88.85 97.88 2.72 99.57 0.51 JAGYZH01 1933 2029 2029 69 1 25 1 Streptococcus_lactarius_homd_HMT_948 GCA_018371955.1 HMT-201 L2_013_000G1_dasL2_013_000G1_metabat.metabat.61_sub Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum L2_013_000G1_dasL2_013_000G1_metabat.metabat.61_sub 114 2270152 yes 28.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/371/955/GCA_018371955.1_ASM1837195v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium periodonticum_D PRJNA698986 860 SAMN17801580 ASM1837195v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:30.116 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 9.8x 93.14 99.44 0.56 99.99 0.23 JAHAJX01 2144 2197 2197 21 0 31 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_018372015.1 HMT-430 L3_114_000G1_dasL3_114_000G1_concoct_19 Unnamed Cultivated Oral (Abundance: Medium) HMT-430 Lachnoanaerobaculum sp. HMT-430 L3_114_000G1_dasL3_114_000G1_concoct_19 98 2677206 yes 36.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/015/GCA_018372015.1_ASM1837201v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum sp000287675 PRJNA698986 2049030 SAMN17801576 ASM1837201v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:29.970 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.4x 98.73 0 98.51 0.3 GCF_018372015.1 JAHAJT01 2450 2513 2513 16 0 46 1 Lachnoanaerobaculum_sp_HMT_430_homd_HMT_430 GCA_018372275.1 HMT-560 L3_101_000G1_dasL3_101_000G1_concoct_104 Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae L3_101_000G1_dasL3_101_000G1_concoct_104 46 3274457 yes 51.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/275/GCA_018372275.1_ASM1837227v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJNA698986 28126 SAMN17801565 ASM1837227v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:29.770 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 5.7x 98.6 99.31 0 99.97 0 GCF_018372275.1 JAHAJI01 2672 2730 2730 9 0 48 1 Segatella_buccae_homd_HMT_560 GCA_018372295.1 HMT-298 L2_023_000G1_dasL2_023_000G1_concoct_61 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola L2_023_000G1_dasL2_023_000G1_concoct_61 171 2815723 yes 41.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/295/GCA_018372295.1_ASM1837229v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA698986 470565 SAMN17801564 ASM1837229v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:29.753 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 11.2x 97.68 93.83 0.15 97.14 0.02 GCF_018372295.1 JAHAJH01 2263 2343 2343 39 0 40 1 Prevotella_histicola_homd_HMT_298 GCA_018372995.1 HMT-036 L3_098_047G1_dasL3_098_047G1_concoct_31 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 L3_098_047G1_dasL3_098_047G1_concoct_31 46 2055066 yes 38.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/995/GCA_018372995.1_ASM1837299v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA698986 726 SAMN17801528 ASM1837299v1 Scaffold IDBA_UD v. v1.1.3 2021-02-04T18:19:29.120 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 1.0x 93.82 97.88 1.86 96.81 1.63 JAHAHX01 2049 2128 2128 31 3 45 0 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_018373115.1 HMT-718 L3_082_243G1_dasL3_082_243G1_concoct_21 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae L3_082_243G1_dasL3_082_243G1_concoct_21 34 1862938 yes 39.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/115/GCA_018373115.1_ASM1837311v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp001811025 PRJNA698986 729 SAMN17801523 ASM1837311v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:29.033 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 3.1x 93.82 99.66 0.08 100 0.12 JAHAHS01 1747 1822 1822 23 2 49 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_018373215.1 HMT-851 L3_128_043G1_dasL3_128_043G1_concoct_21 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus L3_128_043G1_dasL3_128_043G1_concoct_21 22 1832354 yes 38.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/215/GCA_018373215.1_ASM1837321v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJNA698986 726 SAMN17801519 ASM1837321v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:28.963 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.7x 95.66 99.66 0.23 100 0.01 JAHAHO01 1726 1872 1872 94 2 49 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_018373235.1 HMT-682 L3_108_039G1_dasL3_108_039G1_concoct_28 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa L3_108_039G1_dasL3_108_039G1_concoct_28 222 2458797 yes 50.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/235/GCA_018373235.1_ASM1837323v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJNA698986 192066 SAMN17801517 ASM1837323v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:28.930 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.9x 99.87 0.68 99.99 0 JAHAHM01 2182 2248 2248 16 0 49 1 Neisseria_mucosa_homd_HMT_682 GCA_018373375.1 HMT-476 L2_013_000G1_dasL2_013_000G1_maxbin2.maxbin.018 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava L2_013_000G1_dasL2_013_000G1_maxbin2.maxbin.018 64 2103346 yes 49.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/375/GCA_018373375.1_ASM1837337v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA698986 488 SAMN17801510 ASM1837337v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:28.806 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 3.5x 99.77 0.84 100 0.67 JAHAHF01 1978 2045 2045 20 0 46 1 Neisseria_subflava_homd_HMT_476 GCA_018373395.1 HMT-946 L2_021_376G1_dasL2_021_376G1_concoct_14 Named Cultivated Oral (Abundance: Medium) HMT-946 Haemophilus pittmaniae L2_021_376G1_dasL2_021_376G1_concoct_14 72 1963148 yes 42.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/395/GCA_018373395.1_ASM1837339v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D pittmaniae PRJNA698986 249188 SAMN17801509 ASM1837339v1 Scaffold IDBA_UD v. v1.1.3 2021-02-04T18:19:28.786 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 25.1x 98.5 94.3 0.82 94.58 1.72 GCF_018373395.1 JAHAHE01 1800 1848 0 0 0 47 1 Haemophilus_pittmaniae_homd_HMT_946 GCA_018373485.1 HMT-036 L2_059_000G1_dasL2_059_000G1_concoct_52 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 L2_059_000G1_dasL2_059_000G1_concoct_52 17 1876943 yes 38.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/485/GCA_018373485.1_ASM1837348v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA698986 726 SAMN17801504 ASM1837348v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:28.693 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 10.9x 93.75 99.61 0.08 100 0.07 JAHAGZ01 1779 1862 1862 31 2 49 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_018373565.1 HMT-417 L2_037_123G1_dasL2_037_123G1_concoct_10_sub Unnamed Cultivated Oral (Abundance: High) HMT-417 Leptotrichia sp. HMT-417 L2_037_123G1_dasL2_037_123G1_concoct_10_sub 114 2386079 yes 29.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/565/GCA_018373565.1_ASM1837356v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei_A PRJNA698986 157687 SAMN17801500 ASM1837356v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:28.613 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 25.6x 92.51 100 1.3 99.93 1.79 GCF_018373565.1 JAHAGV01 2144 2225 2225 47 0 33 1 Leptotrichia_sp_HMT_417_homd_HMT_417 GCA_018373775.1 HMT-161 L2_059_052G1_dasL2_059_052G1_metabat.metabat.9 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L2_059_052G1_dasL2_059_052G1_metabat.metabat.9 16 2007952 yes 38.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/775/GCA_018373775.1_ASM1837377v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_F PRJNA698986 1926307 SAMN17801490 ASM1837377v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:28.450 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 31.6x 100 0 99.98 0.13 GCF_018373775.1 JAHAGL01 1809 1882 1882 22 4 46 1 Veillonella_parvula_homd_HMT_161 GCA_018373795.1 HMT-524 L2_059_037G1_dasL2_059_037G1_concoct_11 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica L2_059_037G1_dasL2_059_037G1_concoct_11 80 2000450 yes 38.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/795/GCA_018373795.1_ASM1837379v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA698986 1926307 SAMN17801487 ASM1837379v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:28.400 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 71.5x 100 0.3 100 0.04 GCF_018373795.1 JAHAGI01 1826 1890 1890 19 1 43 1 Veillonella_atypica_homd_HMT_524 GCA_018373895.1 HMT-017 L2_059_000G1_dasL2_059_000G1_concoct_90 Named Cultivated Skin (Abundance: High) HMT-017 Anaerococcus octavius L2_059_000G1_dasL2_059_000G1_concoct_90 26 1973144 yes 30.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/895/GCA_018373895.1_ASM1837389v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus octavius PRJNA698986 1872515 SAMN17801484 ASM1837389v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:28.353 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 27.3x 99.39 0.91 99.56 1.52 GCF_018373895.1 JAHAGF01 1839 1904 1904 30 0 34 1 Anaerococcus_octavius_homd_HMT_017 GCA_018373935.1 HMT-524 L2_057_061G1_dasL2_057_061G1_concoct_20 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica L2_057_061G1_dasL2_057_061G1_concoct_20 62 2088614 yes 39.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/935/GCA_018373935.1_ASM1837393v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA698986 1926307 SAMN17801480 ASM1837393v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:28.286 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 123.3x 98.8 0 99.98 0.08 GCF_018373935.1 JAHAGB01 1913 1981 1981 20 2 45 1 Veillonella_atypica_homd_HMT_524 GCA_018373995.1 HMT-161 L2_057_048G1_dasL2_057_048G1_concoct_15_sub Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L2_057_048G1_dasL2_057_048G1_concoct_15_sub 110 2269124 yes 38.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/995/GCA_018373995.1_ASM1837399v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_D PRJNA698986 29466 SAMN17801478 ASM1837399v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:28.256 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 265.3x 96.32 97.25 0.8 94.49 2.39 GCF_018373995.1 JAHAFZ01 2017 2068 2068 21 2 27 1 Veillonella_parvula_homd_HMT_161 GCA_018374435.1 HMT-161 L3_058_052G1_dasL3_058_052G1_concoct_12 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_058_052G1_dasL3_058_052G1_concoct_12 17 2035433 yes 38.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/374/435/GCA_018374435.1_ASM1837443v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella sp032483415 PRJNA698986 1926307 SAMN17801456 ASM1837443v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:27.890 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 11.5x 100 0.2 99.97 0.47 GCF_018374435.1 JAHAFD01 1870 1938 1938 21 2 44 1 Veillonella_parvula_homd_HMT_161 GCA_018374465.1 HMT-718 L3_058_063G1_dasL3_058_063G1_maxbin2.maxbin.008 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae L3_058_063G1_dasL3_058_063G1_maxbin2.maxbin.008 36 2150067 yes 39.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/374/465/GCA_018374465.1_ASM1837446v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA698986 729 SAMN17801457 ASM1837446v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:27.906 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 577.9x 96.45 99.89 0 100 0.04 JAHAFE01 2056 2136 2136 27 4 48 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_018374535.1 HMT-118 L3_058_000M1_dasL3_058_000M1_concoct_8 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus L3_058_000M1_dasL3_058_000M1_concoct_8 35 1843002 yes 45.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/374/535/GCA_018374535.1_ASM1837453v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA698986 218538 SAMN17801452 ASM1837453v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:27.826 USA: Pittsburgh, Magee-Womens maternal feces Illumina NovaSeq 6000 University of California, Berkeley 6.4x 97.64 98.1 0.63 99.94 0.09 GCF_018374535.1 JAHAEZ01 1762 1841 1841 29 0 49 1 Dialister_invisus_homd_HMT_118 GCA_018374795.1 HMT-524 L2_040_071G1_dasL2_040_071G1_maxbin2.maxbin.010 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica L2_040_071G1_dasL2_040_071G1_maxbin2.maxbin.010 50 2045937 yes 38.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/374/795/GCA_018374795.1_ASM1837479v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA698986 1926307 SAMN17801439 ASM1837479v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:27.616 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 107.0x 99.48 0.02 99.91 0.29 GCF_018374795.1 JAHAEM01 1855 1917 1917 18 3 40 1 Veillonella_atypica_homd_HMT_524 GCA_018375015.1 HMT-552 L2_040_000G1_dasL2_040_000G1_concoct_81 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum L2_040_000G1_dasL2_040_000G1_concoct_81 44 2593286 yes 63.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/375/015/GCA_018375015.1_ASM1837501v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA698986 1977903 SAMN17801430 ASM1837501v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:27.476 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 34.2x 100 0 100 0.18 JAHAED01 2339 2411 2411 23 1 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_018375345.1 HMT-118 L2_047_362G1_dasL2_047_362G1_concoct_60 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus L2_047_362G1_dasL2_047_362G1_concoct_60 45 1984395 yes 44.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/375/345/GCA_018375345.1_ASM1837534v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA698986 1955814 SAMN17801410 ASM1837534v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:27.160 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 13.6x 97.47 0.63 99.96 0.42 GCF_018375345.1 JAHADJ01 1921 1997 1997 31 0 44 1 Dialister_invisus_homd_HMT_118 GCA_018375595.1 HMT-552 L2_047_000G1_dasL2_047_000G1_concoct_98 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum L2_047_000G1_dasL2_047_000G1_concoct_98 160 2673190 yes 63.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/375/595/GCA_018375595.1_ASM1837559v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA698986 1977903 SAMN17801399 ASM1837559v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:26.980 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 105.4x 97.81 1.6 99.79 0.4 JAHACY01 2466 2545 2545 28 1 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_018376035.1 HMT-160 L3_069_061G1_dasL3_069_061G1_maxbin2.maxbin.006 Named Cultivated Oral (Abundance: High) HMT-160 Veillonella dispar L3_069_061G1_dasL3_069_061G1_maxbin2.maxbin.006 121 1972117 yes 38.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/376/035/GCA_018376035.1_ASM1837603v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella dispar PRJNA698986 39778 SAMN17801375 ASM1837603v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:26.573 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 8.0x 95.38 96.57 0.02 92.63 1.5 GCF_018376035.1 JAHACA01 1789 1838 1838 17 5 27 0 Veillonella_dispar_homd_HMT_160 GCA_018376055.1 HMT-524 L3_069_024G1_dasL3_069_024G1_maxbin2.maxbin.004 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica L3_069_024G1_dasL3_069_024G1_maxbin2.maxbin.004 36 2054967 yes 38.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/376/055/GCA_018376055.1_ASM1837605v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA698986 1926307 SAMN17801373 ASM1837605v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:26.540 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 39.1x 100 0 99.99 0.11 GCF_018376055.1 JAHABY01 1886 1951 1951 19 2 43 1 Veillonella_atypica_homd_HMT_524 GCA_018376335.1 HMT-038 L3_069_000G1_dasL3_069_000G1_concoct_2 Named Cultivated Oral (Abundance: Scarce) HMT-038 Olsenella uli L3_069_000G1_dasL3_069_000G1_concoct_2 33 2106268 yes 64.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/376/335/GCA_018376335.1_ASM1837633v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella;s__Olsenella uli PRJNA698986 133926 SAMN17801362 ASM1837633v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:26.370 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 0.1x 99.33 99.19 0 99.87 0.56 GCF_018376335.1 JAHABN01 1829 1891 1891 13 0 48 1 Olsenella_uli_homd_HMT_038 GCA_018376515.1 HMT-158 L3_072_011G1_dasL3_072_011G1_concoct_4 Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae L3_072_011G1_dasL3_072_011G1_concoct_4 29 1978772 yes 39.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/376/515/GCA_018376515.1_ASM1837651v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJNA698986 671228 SAMN17801353 ASM1837651v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:26.226 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 80.0x 100 0 99.97 0.08 GCF_018376515.1 JAHABE01 1830 1890 1890 19 3 37 1 Veillonella_rogosae_homd_HMT_158 GCA_018376955.1 HMT-161 L3_068_243G1_dasL3_068_243G1_maxbin2.maxbin.007 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L3_068_243G1_dasL3_068_243G1_maxbin2.maxbin.007 32 2154237 yes 38.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/376/955/GCA_018376955.1_ASM1837695v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_L PRJNA698986 1926307 SAMN17801331 ASM1837695v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:25.876 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 13.8x 100 0 99.98 0.3 GCF_018376955.1 JAHAAI01 1952 2021 2021 20 4 44 1 Veillonella_parvula_homd_HMT_161 GCA_018377045.1 HMT-736 L3_063_000G1_dasL3_063_000G1_maxbin2.maxbin.098 Named Cultivated Oral (Abundance: Medium) HMT-736 Dialister pneumosintes L3_063_000G1_dasL3_063_000G1_maxbin2.maxbin.098 25 1238898 yes 34.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/377/045/GCA_018377045.1_ASM1837704v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Allisonella;s__Allisonella pneumosinta PRJNA698986 1955814 SAMN17801326 ASM1837704v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:25.796 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 1.1x 96.11 0 99.46 0.66 JAHAAD01 1181 1252 1252 19 2 49 1 Dialister_pneumosintes_homd_HMT_736 GCA_018377135.1 HMT-021 L3_063_000G1_dasL3_063_000G1_concoct_18 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis L3_063_000G1_dasL3_063_000G1_concoct_18 240 1842922 yes 39.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/377/135/GCA_018377135.1_ASM1837713v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA698986 1343 SAMN17801321 ASM1837713v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:25.710 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 36.4x 98.61 96.88 2.55 99.33 2.62 GCF_018377135.1 JAGZZY01 1756 1828 1828 47 1 23 1 Streptococcus_vestibularis_homd_HMT_021 GCA_018378045.1 HMT-784 L2_039_000G1_dasL2_039_000G1_maxbin2.maxbin.073 Named Cultivated Nasal (Abundance: High) HMT-784 Peptoniphilus lacydonensis L2_039_000G1_dasL2_039_000G1_maxbin2.maxbin.073 81 1811805 yes 29.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/045/GCA_018378045.1_ASM1837804v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacydonensis PRJNA698986 54005 SAMN17801277 ASM1837804v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:24.946 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 24.2x 82.07 98.95 0 99.94 1.25 JAGZYG01 1687 1741 1741 30 1 22 1 Peptoniphilus_lacydonensis_homd_HMT_784 GCA_018378165.1 HMT-780 L2_013_000G1_dasL2_013_000G1_metabat.metabat.46_sub Unnamed Cultivated Oral (Abundance: High) HMT-780 Veillonella sp. HMT-780 L2_013_000G1_dasL2_013_000G1_metabat.metabat.46_sub 28 1760680 yes 39.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/165/GCA_018378165.1_ASM1837816v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp001553345 PRJNA698986 671229 SAMN17801269 ASM1837816v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:24.816 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 32.5x 98.08 0.4 92.28 0.28 JAGZXY01 1602 1659 1659 19 2 35 1 Veillonella_sp_HMT_780_homd_HMT_780 GCA_018378275.1 HMT-866 L2_013_000G1_dasL2_013_000G1_concoct_44_sub Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii L2_013_000G1_dasL2_013_000G1_concoct_44_sub 185 2019214 yes 57.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/275/GCA_018378275.1_ASM1837827v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJNA698986 55565 SAMN17801264 ASM1837827v1 Scaffold IDBA_UD v. v1.1.3 2021-02-04T18:19:24.736 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 4.1x 99.01 1.18 94.15 0.29 JAGZXT01 1663 1718 1718 9 1 44 1 Actinomyces_graevenitzii_homd_HMT_866 GCA_018378335.1 HMT-524 L1_008_364G1_dasL1_008_364G1_concoct_37 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica L1_008_364G1_dasL1_008_364G1_concoct_37 95 2009800 yes 38.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/335/GCA_018378335.1_ASM1837833v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA698986 1926307 SAMN17801261 ASM1837833v1 Scaffold IDBA_UD v. v1.1.3 2021-02-04T18:19:24.690 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 51.2x 99.17 0.67 98.95 1.51 GCF_018378335.1 JAGZXQ01 1859 1919 1919 17 3 39 1 Veillonella_atypica_homd_HMT_524 GCA_018378345.1 HMT-035 L1_008_364G1_dasL1_008_364G1_concoct_34_sub Named Cultivated Oral (Abundance: High) HMT-035 Haemophilus paraphrohaemolyticus L1_008_364G1_dasL1_008_364G1_concoct_34_sub 230 1802816 yes 40.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/345/GCA_018378345.1_ASM1837834v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A paraphrohaemolyticus PRJNA698986 736 SAMN17801260 ASM1837834v1 Scaffold IDBA_UD v. v1.1.3 2021-02-04T18:19:24.670 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 6.6x 96.53 94.45 1.14 92.4 1.35 GCF_018378345.1 JAGZXP01 1679 1748 1748 24 3 41 1 Haemophilus_paraphrohaemolyticus_homd_HMT_035 GCA_018378435.1 HMT-718 L1_008_241G1_dasL1_008_241G1_concoct_7 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae L1_008_241G1_dasL1_008_241G1_concoct_7 15 1869941 yes 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/435/GCA_018378435.1_ASM1837843v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp927911595 PRJNA698986 729 SAMN17801258 ASM1837843v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:24.640 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 18.4x 94.23 99.43 0 100 0.01 JAGZXN01 1767 1844 1844 24 3 49 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_018378535.1 HMT-681 L1_008_092G1_dasL1_008_092G1_concoct_16 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 L1_008_092G1_dasL1_008_092G1_concoct_16 20 2198841 yes 60.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/535/GCA_018378535.1_ASM1837853v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJNA698986 43675 SAMN17801253 ASM1837853v1 Scaffold IDBA_UD v. v1.1.3 2021-02-04T18:19:24.530 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 12.3x 88.75 99.33 0.67 100 0.02 GCF_018378535.1 JAGZXI01 1709 1775 1775 12 3 50 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_018378535.1 HMT-681 L1_008_092G1_dasL1_008_092G1_concoct_16 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 L1_008_092G1_dasL1_008_092G1_concoct_16 20 2198841 yes 60.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/535/GCA_018378535.1_ASM1837853v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJNA698986 43675 SAMN17801253 ASM1837853v1 Scaffold IDBA_UD v. v1.1.3 2021-02-04T18:19:24.530 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 12.3x 88.75 99.33 0.67 100 0.02 GCF_018378535.1 JAGZXI01 1709 1775 1775 12 3 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_018378595.1 HMT-298 L2_013_037G1_dasL2_013_037G1_metabat.metabat.15 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola L2_013_037G1_dasL2_013_037G1_metabat.metabat.15 75 2945174 yes 41.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/595/GCA_018378595.1_ASM1837859v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA698986 470565 SAMN17801248 ASM1837859v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:24.390 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 8.8x 97.93 98.99 0.51 99.75 0.15 JAGZXD01 2386 2442 2442 7 0 48 1 Prevotella_histicola_homd_HMT_298 GCA_018378815.1 HMT-118 L2_013_245G1_dasL2_013_245G1_concoct_5 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus L2_013_245G1_dasL2_013_245G1_concoct_5 44 1929021 yes 45.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/815/GCA_018378815.1_ASM1837881v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA698986 1955814 SAMN17801235 ASM1837881v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:24.180 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 12.7x 98.1 0.63 100 1.14 GCF_018378815.1 JAGZWQ01 1874 1961 1961 29 0 57 1 Dialister_invisus_homd_HMT_118 GCA_018378995.1 HMT-524 L2_013_122G1_dasL2_013_122G1_concoct_36 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica L2_013_122G1_dasL2_013_122G1_concoct_36 136 1840430 yes 38.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/995/GCA_018378995.1_ASM1837899v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA698986 1926307 SAMN17801228 ASM1837899v1 Scaffold IDBA_UD v. v1.1.3 2021-02-04T18:19:24.070 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 44.9x 93.71 0 99.39 0.22 GCF_018378995.1 JAGZWJ01 1705 1770 1770 18 1 45 1 Veillonella_atypica_homd_HMT_524 GCA_018379055.1 HMT-082 L2_013_037G1_dasL2_013_037G1_metabat.metabat.27 Named Cultivated Oral (Abundance: Medium) HMT-082 Lachnoanaerobaculum orale L2_013_037G1_dasL2_013_037G1_metabat.metabat.27 43 2679619 yes 37.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/379/055/GCA_018379055.1_ASM1837905v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum orale PRJNA698986 712976 SAMN17801225 ASM1837905v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:24.020 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 16.9x 98.73 0 96.35 0.09 JAGZWG01 2501 2562 2562 16 0 44 1 Lachnoanaerobaculum_orale_homd_HMT_082 GCA_018379175.1 HMT-161 L1_007_122G1_dasL1_007_122G1_concoct_24 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L1_007_122G1_dasL1_007_122G1_concoct_24 45 2139673 yes 38.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/379/175/GCA_018379175.1_ASM1837917v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_K PRJNA698986 29466 SAMN17801219 ASM1837917v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:23.923 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 32.6x 96.48 99.4 0 99.99 0.95 GCF_018379175.1 JAGZWA01 1935 2006 2006 23 4 43 1 Veillonella_parvula_homd_HMT_161 GCA_018379295.1 HMT-411 L1_007_061G1_dasL1_007_061G1_concoct_11 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis L1_007_061G1_dasL1_007_061G1_concoct_11 84 2042609 yes 41.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/379/295/GCA_018379295.1_ASM1837929v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001813105 PRJNA698986 1318 SAMN17801215 ASM1837929v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:23.860 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 9.8x 94.13 99.66 0.24 100 0.37 JAGZVW01 1924 1992 1992 38 1 28 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_018380075.1 HMT-161 L1_007_365G1_dasL1_007_365G1_metabat.metabat.9 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L1_007_365G1_dasL1_007_365G1_metabat.metabat.9 10 2159021 yes 38.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/380/075/GCA_018380075.1_ASM1838007v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella sp032470285 PRJNA698986 1926307 SAMN17801174 ASM1838007v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:23.026 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 290.4x 100 0 100 0.06 GCF_018380075.1 JAGZUH01 1988 2059 2059 22 4 44 1 Veillonella_parvula_homd_HMT_161 GCA_018380325.1 HMT-524 L2_037_047G1_dasL2_037_047G1_maxbin2.maxbin.001 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica L2_037_047G1_dasL2_037_047G1_maxbin2.maxbin.001 93 2013083 yes 38.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/380/325/GCA_018380325.1_ASM1838032v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA698986 1926307 SAMN17801163 ASM1838032v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:22.840 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 117.3x 97.12 0.15 95.53 0.4 GCF_018380325.1 JAGZTW01 1821 1876 1876 18 4 32 1 Veillonella_atypica_homd_HMT_524 GCA_018380915.1 HMT-891 L2_039_000G1_dasL2_039_000G1_concoct_54 Named Cultivated Vaginal (Abundance: Medium) HMT-891 Bifidobacterium scardovii L2_039_000G1_dasL2_039_000G1_concoct_54 101 3001014 yes 64.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/380/915/GCA_018380915.1_ASM1838091v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium scardovii PRJNA698986 158787 SAMN17801138 ASM1838091v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:22.403 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 12.0x 99.23 96.16 2 95.03 0.43 GCF_018380915.1 JAGZSX01 2382 2451 2451 14 0 54 1 Bifidobacterium_scardovii_homd_HMT_891 GCA_018381075.1 HMT-681 L2_038_092G1_dasL2_038_092G1_concoct_40 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 L2_038_092G1_dasL2_038_092G1_concoct_40 57 2233101 yes 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/075/GCA_018381075.1_ASM1838107v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA698986 43675 SAMN17801127 ASM1838107v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:22.203 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 14.6x 95.75 98.67 0 99.99 1.02 GCF_018381075.1 JAGZSM01 1730 1796 1796 13 4 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_018381075.1 HMT-681 L2_038_092G1_dasL2_038_092G1_concoct_40 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 L2_038_092G1_dasL2_038_092G1_concoct_40 57 2233101 yes 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/075/GCA_018381075.1_ASM1838107v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA698986 43675 SAMN17801127 ASM1838107v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:22.203 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 14.6x 95.75 98.67 0 99.99 1.02 GCF_018381075.1 JAGZSM01 1730 1796 1796 13 4 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_018381415.1 HMT-524 L2_023_015G1_dasL2_023_015G1_concoct_7 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica L2_023_015G1_dasL2_023_015G1_concoct_7 183 2024019 yes 39.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/415/GCA_018381415.1_ASM1838141v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA698986 1926307 SAMN17801112 ASM1838141v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:21.903 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 46.7x 98.8 4.58 99.99 3.97 GCF_018381415.1 JAGZRX01 1836 1900 1900 19 2 42 1 Veillonella_atypica_homd_HMT_524 GCA_018381475.1 HMT-161 L2_022_103G1_dasL2_022_103G1_maxbin2.maxbin.005 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L2_022_103G1_dasL2_022_103G1_maxbin2.maxbin.005 14 2073460 yes 38.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/475/GCA_018381475.1_ASM1838147v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJNA698986 1926307 SAMN17801109 ASM1838147v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:21.853 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 61.1x 99.7 0 99.98 0.1 GCF_018381475.1 JAGZRU01 1857 1921 1921 22 2 39 1 Veillonella_parvula_homd_HMT_161 GCA_018381695.1 HMT-122 L2_021_251G1_dasL2_021_251G1_concoct_12 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis L2_021_251G1_dasL2_021_251G1_concoct_12 28 1707670 yes 45.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/695/GCA_018381695.1_ASM1838169v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJNA698986 187326 SAMN17801097 ASM1838169v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:21.636 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 14.1x 100 0.3 98.16 0.03 JAGZRI01 1596 1674 1674 26 2 49 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_018381755.1 HMT-161 L2_021_096G1_dasL2_021_096G1_concoct_19 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula L2_021_096G1_dasL2_021_096G1_concoct_19 22 2033482 yes 38.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/755/GCA_018381755.1_ASM1838175v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJNA698986 1926307 SAMN17801095 ASM1838175v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:21.603 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 146.4x 100 0 99.99 0.11 GCF_018381755.1 JAGZRG01 1879 1949 1949 22 5 42 1 Veillonella_parvula_homd_HMT_161 GCA_018382395.1 HMT-718 L2_023_068G1_dasL2_023_068G1_metabat.metabat.4 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae L2_023_068G1_dasL2_023_068G1_metabat.metabat.4 24 1931183 yes 39.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/382/395/GCA_018382395.1_ASM1838239v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_R PRJNA698986 729 SAMN17801064 ASM1838239v1 Contig IDBA_UD v. v1.1.3 2021-02-04T18:19:21.046 USA: Pittsburgh, Magee-Womens infant feces Illumina NovaSeq 6000 University of California, Berkeley 209.7x 94.38 99.7 0.12 100 0.47 JAGZQB01 1812 1892 1892 26 5 48 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_018406505.1 HMT-156 S12025-13 Named Cultivated Oral (Abundance: High) HMT-156 Veillonella nakazawae S12025-13 1 2072807 38.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/406/505/GCA_018406505.1_ASM1840650v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella nakazawae PRJDB3830 2682455 SAMD00199104 ASM1840650v1 Complete Genome Unicycler v. 0.4.8 2021-04-02T16:06:23.530 Thailand:Bangkok Illumina MiSeq; GridION X5 Health Sciences University of Hokkaido 150.0x 100 0 99.99 0.13 GCF_018406505.1 1869 1947 1947 17 12 48 1 Veillonella_nakazawae_homd_HMT_156 GCA_018407735.1 HMT-116 1I27 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis 1I27 35 2456583 32.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/407/735/GCA_018407735.1_ASM1840773v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA722783 29388 SAMN18793319 ASM1840773v1 Contig SKESA v. 2.4.0 2021-04-18T23:21:05.617 United Kingdom: Newcastle upon Illumina HiSeq Wenzhou-Kean University: Kean University - Wenzhou Campus 478.0x 99.72 99.81 0.06 99.99 0.66 GCF_018407735.1 JAGSXE01 2460 2568 2568 58 2 47 1 Staphylococcus_capitis_homd_HMT_116 GCA_018407745.1 HMT-116 1I23 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis 1I23 34 2547948 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/407/745/GCA_018407745.1_ASM1840774v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA722783 29388 SAMN18793317 ASM1840774v1 Contig SKESA v. 2.4.0 2021-04-18T23:21:05.593 United Kingdom: Newcastle upon Illumina HiSeq Wenzhou-Kean University: Kean University - Wenzhou Campus 451.0x 99.57 99.81 0.92 99.99 0.62 GCF_018407745.1 JAGSXC01 2473 2591 2591 54 4 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_018407905.1 HMT-116 1H29 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis 1H29 18 2403389 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/407/905/GCA_018407905.1_ASM1840790v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA722783 29388 SAMN18793313 ASM1840790v1 Contig SKESA v. 2.4.0 2021-04-18T23:21:05.547 United Kingdom: Newcastle upon Illumina HiSeq Wenzhou-Kean University: Kean University - Wenzhou Campus 497.0x 98.98 99.81 0.08 100 0.19 GCF_018407905.1 JAGSWY01 2278 2392 2392 49 5 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_018407965.1 HMT-567 1H22 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae 1H22 20 2672556 33.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/407/965/GCA_018407965.1_ASM1840796v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA722783 29380 SAMN18793311 ASM1840796v1 Contig SKESA v. 2.4.0 2021-04-18T23:21:05.523 United Kingdom: Newcastle upon Illumina HiSeq Wenzhou-Kean University: Kean University - Wenzhou Campus 436.0x 98.63 99.81 0.09 100 0.15 GCF_018407965.1 JAGSWW01 2565 2702 2702 72 7 57 1 Staphylococcus_caprae_homd_HMT_567 GCA_018408075.1 HMT-331 1H20 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis 1H20 53 2251511 37.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/408/075/GCA_018408075.1_ASM1840807v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJNA722783 29379 SAMN18793309 ASM1840807v1 Contig SKESA v. 2.4.0 2021-04-18T23:21:05.497 United Kingdom: Newcastle upon Illumina HiSeq Wenzhou-Kean University: Kean University - Wenzhou Campus 530.0x 99.73 99.45 0 99.95 0.07 GCF_018408075.1 JAGSWU01 2176 2278 2278 41 3 57 1 Staphylococcus_auricularis_homd_HMT_331 GCA_018456105.1 HMT-127 MBF12-19J Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis MBF12-19J 2 2295496 31.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/456/105/GCA_018456105.1_ASM1845610v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA720100 145393 SAMN18633150 ASM1845610v1 Contig de novo assembly Flye v. 2.8.1 2021-04-06T11:46:04.497 Indonesia:Depok skin Oxford Nanopore GridION Universitas Indonesia 230.0x 99.03 99.11 0.57 99.97 0.08 GCF_018456105.1 JAGMUC01 2155 2319 2319 81 19 63 1 Staphylococcus_hominis_homd_HMT_127 GCA_018492835.1 HMT-972 CL03T12C04 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-972 Bacteroides xylanisolvens CL03T12C04 3 5895426 42.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/492/835/GCA_018492835.1_ASM1849283v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens PRJNA669351 997892 SAMN16451182 ASM1849283v1 Contig FALCON-Unzip v. 1.2.0; Flye v. 2.8.2 2020-10-19T11:44:40.393 USA: Boston feces PacBio Sequel Brigham & Womens Hospital 420.0x 97.37 96.39 0 99.84 0.32 GCF_018492835.1 JAGHEF01 4593 4688 4688 22 9 63 1 Bacteroides_xylanisolvens_homd_HMT_972 GCA_018499385.1 HMT-411 PA11332C3 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis PA11332C3 55 2155463 41.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/499/385/GCA_018499385.1_ASM1849938v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001813105 PRJNA731113 1318 SAMN19268627 ASM1849938v1 Scaffold SPAdes v. 3.6.2 2021-05-19T11:20:06.260 Kenya:Lwak stool Illumina HiSeq Univ. of Maryland 150.0x 94.35 100 0.07 100 0 GCF_018499385.1 JAHDAE01 2028 2116 2116 39 3 45 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_018499465.1 HMT-411 P468302 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis P468302 41 1965434 41.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/499/465/GCA_018499465.1_ASM1849946v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_K PRJNA731113 1318 SAMN19268632 ASM1849946v1 Contig SPAdes v. 3.6.4 2021-05-19T11:20:06.333 Kenya:Kibera stool Illumina HiSeq Univ. of Maryland 150.0x 94.71 100 0.42 99.99 0.13 GCF_018499465.1 JAHDAA01 1852 1948 1948 44 5 46 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_018499505.1 HMT-411 P430801 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis P430801 20 1844091 41.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/499/505/GCA_018499505.1_ASM1849950v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_K PRJNA731113 1318 SAMN19268629 ASM1849950v1 Contig SPAdes v. 3.6.2 2021-05-19T11:20:06.290 Kenya:Kibera stool Illumina HiSeq Univ. of Maryland 150.0x 94.72 93.56 1.02 89.99 0.43 GCF_018499505.1 JAHDAC01 1769 1854 1854 36 5 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_018499575.1 HMT-638 PA11599CN2 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 PA11599CN2 7 1716789 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/499/575/GCA_018499575.1_ASM1849957v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_K PRJNA731113 68892 SAMN19268615 ASM1849957v1 Contig SPAdes v. 3.6.2 2021-05-19T11:20:06.087 Kenya:Lwak stool Illumina HiSeq Univ. of Maryland 150.0x 91.28 100 0.17 99.99 0.02 GCF_018499575.1 JAHDAP01 1648 1730 0 33 3 45 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_018499575.1 HMT-638 PA11599CN2 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 PA11599CN2 7 1716789 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/499/575/GCA_018499575.1_ASM1849957v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_K PRJNA731113 68892 SAMN19268615 ASM1849957v1 Contig SPAdes v. 3.6.2 2021-05-19T11:20:06.087 Kenya:Lwak stool Illumina HiSeq Univ. of Maryland 150.0x 91.28 100 0.17 99.99 0.02 GCF_018499575.1 JAHDAP01 1648 1730 0 33 3 45 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_018588765.1 HMT-686 Smu93 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans Smu93 27 2012417 36.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/588/765/GCA_018588765.1_ASM1858876v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA700622 1309 SAMN17834377 ASM1858876v1 Contig Andrew And Aarons Awesome Assembly v. 2012-09 2021-02-08T14:41:09.643 USA: Florida missing Illumina MiSeq University of Florida 50.0x 99.3 100 0 100 0.08 GCF_018588765.1 JAFEVX01 1904 1996 1996 29 6 56 1 Streptococcus_mutans_homd_HMT_686 GCA_018588785.1 HMT-686 Smu20 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans Smu20 18 2011866 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/588/785/GCA_018588785.1_ASM1858878v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA700622 1309 SAMN17834376 ASM1858878v1 Contig Andrew And Aarons Awesome Assembly v. 2012-09 2021-02-08T14:41:09.626 USA: Florida missing Illumina MiSeq University of Florida 50.0x 99.32 100 0 100 0.08 GCF_018588785.1 JAFEVW01 1895 1986 1986 29 6 55 1 Streptococcus_mutans_homd_HMT_686 GCA_018588825.1 HMT-686 UA159 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UA159 29 2007660 36.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/588/825/GCA_018588825.1_ASM1858882v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA700622 1309 SAMN17834375 ASM1858882v1 Contig Andrew And Aarons Awesome Assembly v. 2012-09 2021-02-08T14:41:09.600 USA: Florida missing Illumina MiSeq University of Florida 50.0x 99.35 100 0 100 0.06 GCF_018588825.1 JAFEVV01 1889 1980 1980 32 6 52 1 Streptococcus_mutans_homd_HMT_686 GCA_018619415.1 HMT-686 E681 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans E681 106 2003248 36.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/619/415/GCA_018619415.1_ASM1861941v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA732902 1309 SAMN19353794 ASM1861941v1 Contig SPAdes v. 3.11.1 2021-05-26T15:28:05.433 USA: Pittsburgh, PA eye Illumina NextSeq University of Mississippi Medical Center 1223.0x 99.1 100 1.68 100 0.26 GCF_018619415.1 JAHHFU01 1865 1942 1942 24 4 48 1 Streptococcus_mutans_homd_HMT_686 GCA_018726805.1 HMT-854 B265 Named Cultivated Oral (Abundance: Scarce) HMT-854 Ralstonia pickettii B265 2 4939245 63.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/726/805/GCA_018726805.1_ASM1872680v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;s__Ralstonia pickettii PRJNA730193 2836825 SAMN19222482 ASM1872680v1 Contig SPAdes v. 1.4.11 2021-05-15T20:23:09.806 USA Commercial Crop Production Field Illumina HiSeq; Oxford Nanopore TEXAS A&M UNIVERSITY 100.0x 99.94 0.01 99.99 0 GCF_018726805.1 JAHCSY01 4546 4647 4647 34 9 57 1 Ralstonia_pickettii_homd_HMT_854 GCA_018783925.1 HMT-161 MCC755 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula MCC755 36 2098128 38.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/783/925/GCA_018783925.1_ASM1878392v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA548918 29466 SAMN12147434 ASM1878392v1 Scaffold Velvet v. 1.2.10 2019-06-27T09:12:27.387 Ireland feces Illumina HiSeq University College Cork 292.6x 96.4 100 0 99.98 0.29 GCF_018783925.1 WQNK01 1869 1945 1945 22 6 47 1 Veillonella_parvula_homd_HMT_161 GCA_018786185.1 HMT-965 MCC001 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-965 Alistipes putredinis MCC001 52 2622641 53.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/786/185/GCA_018786185.1_ASM1878618v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis PRJNA548918 28117 SAMN12147335 ASM1878618v1 Scaffold Velvet v. 1.2.10 2019-06-27T09:12:25.740 Ireland feces Illumina HiSeq University College Cork 248.8x 99.13 99.52 0.96 99.99 0.43 GCF_018786185.1 WQRD01 2378 2445 2445 16 3 47 1 Alistipes_putredinis_homd_HMT_965 GCA_018791825.1 HMT-707 34 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 34 23 1911766 41.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/791/825/GCA_018791825.1_ASM1879182v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CR PRJNA734901 1303 SAMN19548337 ASM1879182v1 Contig SPAdes v. March-2018 2021-06-03T13:27:09.730 USA saliva Illumina MiSeq Newcastle University 37.0x 95.07 99.82 0.24 99.99 0.02 GCF_018791825.1 JAHKGX01 1781 1874 1874 37 5 50 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_018791825.1 HMT-707 34 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 34 23 1911766 41.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/791/825/GCA_018791825.1_ASM1879182v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CR PRJNA734901 1303 SAMN19548337 ASM1879182v1 Contig SPAdes v. March-2018 2021-06-03T13:27:09.730 USA saliva Illumina MiSeq Newcastle University 37.0x 95.07 99.82 0.24 99.99 0.02 GCF_018791825.1 JAHKGX01 1781 1874 1874 37 5 50 1 Streptococcus_oralis_HMT_071_398_707 GCA_018829685.1 HMT-036 SZY H68 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 SZY H68 14 1865564 38.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/829/685/GCA_018829685.1_ASM1882968v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA733005 2839969 SAMN19365527 ASM1882968v1 Contig SOAPdenovo v. Aug-2020 2021-05-27T10:44:07.520 China:Guangzhou sputum specimen Illumina HiSeq The Second Clinic Medical College 100.0x 99.49 0.08 100 0.1 GCF_018829685.1 JAHKKB01 1738 1830 1830 29 10 52 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_018829705.1 HMT-036 SZY H35 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 SZY H35 12 1915946 38.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/829/705/GCA_018829705.1_ASM1882970v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA733005 2839967 SAMN19365525 ASM1882970v1 Contig SOAPdenovo v. Aug-2020 2021-05-27T10:44:07.486 China:Guangzhou sputum specimen Illumina HiSeq The Second Clinic Medical College 100.0x 99.49 0 100 0.07 GCF_018829705.1 JAHKJZ01 1804 1896 1896 29 10 52 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_018829755.1 HMT-036 SZY H8 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 SZY H8 15 1855861 38.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/829/755/GCA_018829755.1_ASM1882975v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA732550 2839031 SAMN19323121 ASM1882975v1 Contig SOAPdenovo v. Aug-2020 2021-05-25T03:51:14.970 China: Guangdong sputum specimen Illumina HiSeq The Second Clinic Medical College 100.0x 99.49 0.3 100 0.02 GCF_018829755.1 JAHKJY01 1721 1811 1811 29 10 50 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_018847595.1 HMT-963 Akk0500b Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-963 Akkermansia muciniphila Akk0500b 1 2788976 55.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/847/595/GCA_018847595.1_ASM1884759v1 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila PRJNA715455 239935 SAMN18350238 ASM1884759v1 Complete Genome Flye v. 2.6 2021-03-18T12:39:06.616 USA:Durham, North Carolina PacBio Sequel Duke University 549.0x 97.34 97.24 0 100 0.17 GCF_018847595.1 2343 2411 2411 5 9 53 1 Akkermansia_muciniphila_homd_HMT_963 GCA_018884085.1 HMT-753 C767 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-753 Cronobacter sakazakii C767 3 4585350 56.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/884/085/GCA_018884085.1_ASM1888408v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter;s__Cronobacter sakazakii PRJNA399551 28141 SAMN14112905 ASM1888408v1 Complete Genome unicycler v. 3.11.0 2020-02-14T12:13:03.913 Mexico:Mexico City Dyalisis liquid PacBio Sequel, Illumina HiSeq Center for Genomic Sciences, National Autonomous University of Mexico (UNAM) 281.0x 98 99.69 0.32 100 0.48 GCF_018884085.1 4207 4436 4436 120 22 86 1 Cronobacter_sakazakii_homd_HMT_753 GCA_018884105.1 HMT-753 C79 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-753 Cronobacter sakazakii C79 3 4501378 56.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/884/105/GCA_018884105.1_ASM1888410v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter;s__Cronobacter sakazakii PRJNA399551 28141 SAMN14112906 ASM1888410v1 Complete Genome unicycler v. 3.11.0 2020-02-14T12:13:03.930 Mexico Soja milk PacBio Sequel, Illumina HiSeq Center for Genomic Sciences, National Autonomous University of Mexico (UNAM) 232.0x 97.9 99.96 0.09 100 0.06 GCF_018884105.1 4125 4338 4338 108 22 82 1 Cronobacter_sakazakii_homd_HMT_753 GCA_018884205.1 HMT-608 YLF016 Named Cultivated Oral (Abundance: Scarce) HMT-608 Limosilactobacillus fermentum YLF016 1 2094354 51.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/884/205/GCA_018884205.1_ASM1888420v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus fermentum PRJNA682291 1613 SAMN16987128 ASM1888420v1 Complete Genome SOAPdenovo v. 2.04 2020-12-03T02:34:06.583 China: Qinghai Province Illumina HiSeq; PacBio RSII Huazhong agricultural university 200.0x 99.38 99.18 0.55 99.97 0.07 GCF_018884205.1 2067 2169 2169 27 15 59 1 Limosilactobacillus_fermentum_homd_HMT_608 GCA_018916935.1 HMT-567 N99 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae N99 13 2645395 33.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/916/935/GCA_018916935.1_ASM1891693v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA733006 29380 SAMN19374072 ASM1891693v1 Contig SPAdes v. 3.9.0 2021-05-28T04:12:07.003 China: Suzhou feces Illumina The Institute of Microbiology of the Chinese Academy of Sciences 99.0x 98.34 99.81 0 100 0.01 GCF_018916935.1 JAHLNS01 2531 2681 2681 83 8 58 1 Staphylococcus_caprae_homd_HMT_567 GCA_018917165.1 HMT-116 N50 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis N50 23 2484181 32.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/917/165/GCA_018917165.1_ASM1891716v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA733006 29388 SAMN19374062 ASM1891716v1 Contig SPAdes v. 3.9.0 2021-05-28T04:12:06.863 China: Suzhou feces Illumina The Institute of Microbiology of the Chinese Academy of Sciences 99.0x 98.95 99.81 0.1 99.99 0.41 GCF_018917165.1 JAHLOC01 2354 2472 2472 49 9 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_018919245.1 HMT-034 UMB8492-1R Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 UMB8492-1R 44 2683029 60.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/919/245/GCA_018919245.1_ASM1891924v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA316969 169292 SAMN19595177 ASM1891924v1 Contig SPAdes v. 3.14.1 2021-06-07T14:43:06.283 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 113.0x 97.03 99.56 0 99.99 0.23 GCF_018919245.1 JAHLMD01 2504 2571 0 7 5 54 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_018919245.1 HMT-034 UMB8492-1R Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 UMB8492-1R 44 2683029 60.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/919/245/GCA_018919245.1_ASM1891924v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA316969 169292 SAMN19595177 ASM1891924v1 Contig SPAdes v. 3.14.1 2021-06-07T14:43:06.283 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 113.0x 97.03 99.56 0 99.99 0.23 GCF_018919245.1 JAHLMD01 2504 2571 0 7 5 54 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_018919345.1 HMT-031 UMB1310-1E Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB1310-1E 30 2493542 58.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/919/345/GCA_018919345.1_ASM1891934v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA316969 43765 SAMN19595173 ASM1891934v1 Contig SPAdes v. 3.14.1 2021-06-07T14:43:06.193 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 185.0x 98.64 100 0 100 0.08 GCF_018919345.1 JAHLLZ01 2180 2254 2254 15 5 53 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_018986335.1 HMT-120 A11 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus A11 24 2485414 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/986/335/GCA_018986335.1_ASM1898633v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA724798 1283 SAMN19654353 ASM1898633v1 Contig SPAdes v. 3.11.1 2021-06-10T07:42:06.270 India: Gujarat Illumina NextSeq Madurai Kamaraj University 100.0x 97.58 99.62 0.08 100 0.23 GCF_018986335.1 JAHMHN01 2437 2563 2563 79 4 42 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_018987235.1 HMT-817 ATCC 33820 Named Cultivated Vaginal (Abundance: High) HMT-817 Lactobacillus crispatus ATCC 33820 1 2239089 37.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/987/235/GCA_018987235.1_ASM1898723v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus crispatus PRJNA716945 47770 SAMN18472633 ASM1898723v1 Complete Genome unicycler v0.4.7 v. MARCH-2021 2021-03-24T12:26:03.526 unknown oral Oxford Nanopore GridION; Illumina NovaSeq 6000 University of Siena 435.0x 99.99 99.03 0.09 99.92 0.26 GCF_018987235.1 2160 2277 2277 37 15 64 1 Lactobacillus_crispatus_homd_HMT_817 GCA_018996905.1 HMT-120 A3.2 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus A3.2 24 2497919 32.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/996/905/GCA_018996905.1_ASM1899690v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA737131 1283 SAMN19685544 ASM1899690v1 Contig SPAdes v. 3.11.1 2021-06-13T05:20:07.250 India: Gujarat, Anand city milk Illumina Madurai Kamaraj University 100.0x 97.56 99.62 0.08 100 0.23 GCF_018996905.1 JAHNUR01 2459 2573 2573 80 4 29 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_019013055.1 HMT-542 CD12_MAG18 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius CD12_MAG18 207 1632659 yes 36.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/013/055/GCA_019013055.1_ASM1901305v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA715634 1261 SAMN18355285 ASM1901305v1 Contig MEGAHIT v. version 1.1.1 2021-03-19T07:29:03.887 Australia mucosal tissue from Crohns disease patient Illumina MiSeq University of Queensland 3.9x 99.18 93.44 0.7 87.93 0.81 JAGIRD01 1437 1496 1496 29 3 26 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_019046945.1 HMT-622 FDAARGOS 1454 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii FDAARGOS 1454 1 2187618 40.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/046/945/GCA_019046945.1_ASM1904694v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA231221 1302 SAMN16357596 ASM1904694v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2020-10-03T14:56:16.760 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3257.4x 99.99 100 0 100 0.15 GCF_019046945.1 2053 2171 2171 46 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_019047505.1 HMT-622 FDAARGOS 1455 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii FDAARGOS 1455 1 2154796 40.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/047/505/GCA_019047505.1_ASM1904750v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA231221 1302 SAMN16357597 ASM1904750v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2020-10-03T14:56:16.780 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3042.6x 95.57 100 0 100 0.1 GCF_019047505.1 2057 2154 2154 25 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_019047785.1 HMT-565 FDAARGOS 1428 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-565 Enterobacter cancerogenus FDAARGOS 1428 1 4821734 55.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/047/785/GCA_019047785.1_ASM1904778v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter cancerogenus PRJNA231221 69218 SAMN16357570 ASM1904778v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2020-10-03T14:56:16.290 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 824.5x 99.99 100 0.29 100 0.05 GCF_019047785.1 4438 4684 4684 133 25 87 1 Enterobacter_cancerogenus_homd_HMT_565 GCA_019047825.1 HMT-677 FDAARGOS 1456 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis FDAARGOS 1456 1 1868859 40.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/047/825/GCA_019047825.1_ASM1904782v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA231221 28037 SAMN16357598 ASM1904782v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2020-10-03T14:56:16.800 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2132.3x 99.99 99.42 0.2 99.99 0.01 GCF_019047825.1 1722 1844 1844 48 12 61 1 Streptococcus_mitis_homd_HMT_677 GCA_019048025.1 HMT-120 FDAARGOS 1453 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus FDAARGOS 1453 3 2568751 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/048/025/GCA_019048025.1_ASM1904802v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA231221 1283 SAMN16357595 ASM1904802v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2020-10-03T14:56:16.740 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 4200.0x 99.99 99.39 0 99.99 0.05 GCF_019048025.1 2424 2507 0 0 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_019048165.1 HMT-341 FDAARGOS 1425 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-341 Corynebacterium coyleae FDAARGOS 1425 1 2510261 61.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/048/165/GCA_019048165.1_ASM1904816v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium coyleae PRJNA231221 53374 SAMN16357567 ASM1904816v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2020-10-03T14:56:16.233 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3617.8x 99.99 97.94 0.18 99.92 0.01 GCF_019048165.1 2355 2429 2429 9 12 52 1 Corynebacterium_coyleae_homd_HMT_341 GCA_019048305.1 HMT-005 FDAARGOS 1393 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-005 Acinetobacter lwoffii FDAARGOS 1393 6 3504477 43.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/048/305/GCA_019048305.1_ASM1904830v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter lwoffii PRJNA231221 28090 SAMN16357535 ASM1904830v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0, SPAdes v. 3.14.1 2020-10-03T14:56:15.670 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 4997.4x 99.99 99.93 0.27 99.99 1.24 GCF_019048305.1 3333 3472 3472 30 21 87 1 Acinetobacter_lwoffii_homd_HMT_005 GCA_019048325.1 HMT-880 FDAARGOS 1437 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-880 Enterococcus durans FDAARGOS 1437 5 3095709 37.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/048/325/GCA_019048325.1_ASM1904832v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B durans PRJNA231221 53345 SAMN16357579 ASM1904832v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0, SPAdes v. 3.14.1 2020-10-03T14:56:16.447 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2331.0x 99.99 99.63 1.12 100 0.9 GCF_019048325.1 2926 3082 3082 68 18 69 1 Enterococcus_durans_homd_HMT_880 GCA_019048525.1 HMT-005 FDAARGOS 1394 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-005 Acinetobacter lwoffii FDAARGOS 1394 9 3466826 42.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/048/525/GCA_019048525.1_ASM1904852v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter lwoffii_K PRJNA231221 28090 SAMN16357536 ASM1904852v1 Complete Genome canu v. 2.1.1, SPAdes v. 3.14.1 2020-10-03T14:56:15.690 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 8261.1x 96.2 99.93 0 100 0.11 GCF_019048525.1 3268 3405 3405 29 21 86 1 Acinetobacter_lwoffii_homd_HMT_005 GCA_019048645.1 HMT-686 FDAARGOS 1458 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans FDAARGOS 1458 1 2019345 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/048/645/GCA_019048645.1_ASM1904864v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA231221 1309 SAMN16357600 ASM1904864v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2020-10-03T14:56:16.837 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3344.1x 99.99 100 0 100 0.06 GCF_019048645.1 1887 1997 1997 29 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_019090945.2 HMT-767 Forsyth1A Named Cultivated Oral (Abundance: Scarce) HMT-767 Streptococcus sinensis Forsyth1A 41 2119737 42.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/090/945/GCA_019090945.2_ASM1909094v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sinensis PRJNA526114 176090 SAMN11268212 ASM1909094v2 Contig SPAdes v. 3.13 2019-03-27T16:03:03.363 USA adult human gingival/subgingival site Illumina HiSeq; Oxford Nanopore MinION University of Nevada, Reno 611.0x 96.56 99.25 0.31 100 0.15 GCF_019090945.2 JABTYC02 2000 2064 2064 33 3 27 1 Streptococcus_sinensis_homd_HMT_767 GCA_019132025.1 HMT-965 DFI.5.5 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-965 Alistipes putredinis DFI.5.5 29 2458158 53.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/132/025/GCA_019132025.1_ASM1913202v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis PRJNA737800 28117 SAMN19731841 ASM1913202v1 Contig SPAdes v. v3.14.0 2021-06-16T15:41:06.273 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 99.34 99.52 0.96 99.97 0.27 GCF_019132025.1 JAHONC01 2167 2237 2237 18 3 48 1 Alistipes_putredinis_homd_HMT_965 GCA_019149255.1 HMT-127 K24 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis K24 27 2162928 31.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/149/255/GCA_019149255.1_ASM1914925v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA741601 1290 SAMN19883480 ASM1914925v1 Contig SPAdes v. 3.11.1 2021-06-26T05:01:35.413 India: Chikkanayakanahalli vil milk Illumina Madurai Kamaraj University 100.0x 98.76 99.38 0 99.98 0.01 GCF_019149255.1 JAHSUW01 2081 2186 2186 52 4 48 1 Staphylococcus_hominis_homd_HMT_127 GCA_019222685.1 HMT-120 NY5 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus NY5 3 2539247 32.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/222/685/GCA_019222685.1_ASM1922268v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA743734 1283 SAMN20059081 ASM1922268v1 Complete Genome Canu v. 1.5 2021-07-05T03:17:03.733 China:Jinan urine Oxford Nanopore; BGISEQ Shandong First Medical University 1689.0x 97.37 99.54 0.14 99.99 0.2 GCF_019222685.1 2522 2682 2682 79 19 61 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_019297775.1 HMT-587 LPB0409 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa LPB0409 1 2434262 53.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/297/775/GCA_019297775.1_ASM1929777v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA744675 2047 SAMN20114930 ASM1929777v1 Complete Genome PacBio SMRT Analysis v. v2.3 2021-07-08T05:37:04.563 South Korea Human sputum PacBio RSII Korea University 192.5x 96.54 99.01 0.66 100 0.34 GCF_019297775.1 2082 2153 2153 13 8 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_019329325.1 HMT-601 B1200343 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1200343 3 2732693 31.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/325/GCA_019329325.1_ASM1932932v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699871 ASM1932932v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:05.896 Germany not collected PacBio Sequel University Hospital Muenster 467.0x 99.53 99.81 0.09 99.99 0.04 GCF_019329325.1 2601 2764 2764 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329365.1 HMT-601 B1208538 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1208538 3 2733536 31.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/365/GCA_019329365.1_ASM1932936v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699873 ASM1932936v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:05.923 Germany not collected PacBio Sequel University Hospital Muenster 368.0x 99.53 99.81 0 99.99 0.03 GCF_019329365.1 2606 2770 2770 87 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329405.1 HMT-601 B1220165 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1220165 3 2733982 31.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/405/GCA_019329405.1_ASM1932940v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699874 ASM1932940v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:05.936 Germany not collected PacBio Sequel University Hospital Muenster 175.0x 99.53 99.81 0 99.99 0.04 GCF_019329405.1 2604 2768 2768 87 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329425.1 HMT-601 B1230143 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1230143 3 2781629 31.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/425/GCA_019329425.1_ASM1932942v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699875 ASM1932942v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:05.946 Germany not collected PacBio Sequel University Hospital Muenster 368.0x 99.54 99.81 0.09 99.99 0.03 GCF_019329425.1 2674 2837 2837 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329505.1 HMT-601 B1262351 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1262351 3 2735368 31.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/505/GCA_019329505.1_ASM1932950v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699876 ASM1932950v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:05.956 Germany not collected PacBio Sequel University Hospital Muenster 254.0x 99.53 99.72 0 99.99 0.04 GCF_019329505.1 2602 2765 2765 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329525.1 HMT-601 B1264454 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1264454 2 2726253 31.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/525/GCA_019329525.1_ASM1932952v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699877 ASM1932952v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:05.970 Germany not collected PacBio Sequel University Hospital Muenster 273.0x 99.53 99.81 0 99.99 0.04 GCF_019329525.1 2593 2756 2756 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329565.1 HMT-601 B1265603 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1265603 3 2732707 31.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/565/GCA_019329565.1_ASM1932956v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699879 ASM1932956v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:05.990 Germany not collected PacBio Sequel University Hospital Muenster 260.0x 99.53 99.81 0.09 99.99 0.04 GCF_019329565.1 2603 2766 2766 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329625.1 HMT-601 B1266915 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1266915 2 2648277 31.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/625/GCA_019329625.1_ASM1932962v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699882 ASM1932962v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.023 Germany not collected PacBio Sequel University Hospital Muenster 442.0x 99.56 99.72 0 99.99 0.03 GCF_019329625.1 2513 2673 2673 83 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329665.1 HMT-601 B1272014 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1272014 2 2815778 31.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/665/GCA_019329665.1_ASM1932966v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699884 ASM1932966v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.046 Germany not collected PacBio Sequel University Hospital Muenster 341.0x 99.53 99.81 0.13 99.99 0.23 GCF_019329665.1 2724 2891 2891 90 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329685.1 HMT-601 B1275857 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1275857 2 2726248 31.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/685/GCA_019329685.1_ASM1932968v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699885 ASM1932968v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.056 Germany not collected PacBio Sequel University Hospital Muenster 317.0x 99.53 99.81 0 99.99 0.03 GCF_019329685.1 2592 2755 2755 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329725.1 HMT-601 B1276296 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1276296 2 2726233 31.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/725/GCA_019329725.1_ASM1932972v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699887 ASM1932972v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.080 Germany not collected PacBio Sequel University Hospital Muenster 451.0x 99.53 99.81 0 99.99 0.04 GCF_019329725.1 2598 2761 2761 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329745.1 HMT-601 B1276912 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1276912 3 2832623 31.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/745/GCA_019329745.1_ASM1932974v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699888 ASM1932974v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.090 Germany not collected PacBio Sequel University Hospital Muenster 349.0x 99.52 99.81 0 99.99 0.08 GCF_019329745.1 2728 2893 2893 88 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019329805.1 HMT-601 B1285135 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis B1285135 2 2726087 31.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/329/805/GCA_019329805.1_ASM1932980v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699891 ASM1932980v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.123 Germany not collected PacBio Sequel University Hospital Muenster 471.0x 99.53 99.81 0.09 99.99 0.03 GCF_019329805.1 2592 2755 2755 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019330125.1 HMT-601 V1933625 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis V1933625 3 2732697 31.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/330/125/GCA_019330125.1_ASM1933012v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699895 ASM1933012v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.170 Germany not collected PacBio Sequel University Hospital Muenster 314.0x 99.53 99.81 0 99.99 0.03 GCF_019330125.1 2602 2765 2765 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019330145.1 HMT-601 V1933793 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis V1933793 3 2754745 31.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/330/145/GCA_019330145.1_ASM1933014v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699896 ASM1933014v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.180 Germany not collected PacBio Sequel University Hospital Muenster 355.0x 99.53 99.81 0.09 99.99 0.03 GCF_019330145.1 2633 2796 2796 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019330165.1 HMT-601 V1936703 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis V1936703 3 2732703 31.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/330/165/GCA_019330165.1_ASM1933016v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699897 ASM1933016v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.193 Germany not collected PacBio Sequel University Hospital Muenster 328.0x 99.53 99.81 0 99.99 0.04 GCF_019330165.1 2599 2762 2762 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019330185.1 HMT-601 V1937538 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis V1937538 3 2751270 31.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/330/185/GCA_019330185.1_ASM1933018v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699898 ASM1933018v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.203 Germany not collected PacBio Sequel University Hospital Muenster 394.0x 99.53 99.72 0 100 0.04 GCF_019330185.1 2622 2786 2786 87 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019330205.1 HMT-601 V1939586 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis V1939586 2 2726247 31.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/330/205/GCA_019330205.1_ASM1933020v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699899 ASM1933020v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.213 Germany not collected PacBio Sequel University Hospital Muenster 376.0x 99.53 99.81 0 99.99 0.03 GCF_019330205.1 2592 2755 2755 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019330225.1 HMT-601 V1949610 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis V1949610 3 2732705 31.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/330/225/GCA_019330225.1_ASM1933022v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699900 ASM1933022v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.226 Germany not collected PacBio Sequel University Hospital Muenster 458.0x 99.53 99.81 0.09 99.99 0.04 GCF_019330225.1 2600 2763 2763 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019330245.1 HMT-601 V1950266 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis V1950266 3 2754755 31.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/330/245/GCA_019330245.1_ASM1933024v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721097 1282 SAMN18699901 ASM1933024v1 Complete Genome HGAP v. SMRT Link V8 2021-04-10T20:44:06.236 Germany not collected PacBio Sequel University Hospital Muenster 366.0x 99.53 99.81 0.09 99.99 0.04 GCF_019330245.1 2637 2800 2800 86 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_019334565.1 HMT-707 34 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 34 1 1920884 41.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/334/565/GCA_019334565.1_ASM1933456v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CR PRJNA746546 1303 SAMN20209571 ASM1933456v1 Complete Genome Unicycler v. February-2021 2021-07-14T11:08:05.427 not collected oral cavity Illumina NextSeq; Oxford Nanopore PromethION Ohio State University 12.0x 95.13 99.82 0.2 99.99 0.02 GCF_019334565.1 1782 1894 1894 37 12 62 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_019334565.1 HMT-707 34 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 34 1 1920884 41.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/334/565/GCA_019334565.1_ASM1933456v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CR PRJNA746546 1303 SAMN20209571 ASM1933456v1 Complete Genome Unicycler v. February-2021 2021-07-14T11:08:05.427 not collected oral cavity Illumina NextSeq; Oxford Nanopore PromethION Ohio State University 12.0x 95.13 99.82 0.2 99.99 0.02 GCF_019334565.1 1782 1894 1894 37 12 62 1 Streptococcus_oralis_HMT_071_398_707 GCA_019334725.1 HMT-476 LPB0400 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava LPB0400 1 2284668 49.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/334/725/GCA_019334725.1_ASM1933472v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA744662 33053 SAMN20114564 ASM1933472v1 Complete Genome PacBio SMRT Analysis v. v2.3 2021-07-08T02:45:05.794 South Korea Human sputum PacBio Korea University 316.7x 95.36 99.92 1.58 100 0.99 GCF_019334725.1 2128 2222 2222 22 12 59 1 Neisseria_subflava_homd_HMT_476 GCA_019334745.1 HMT-188 LPB0401 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria LPB0401 1 2634007 56.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/334/745/GCA_019334745.1_ASM1933474v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA744664 172042 SAMN20114566 ASM1933474v1 Complete Genome PacBio SMRT Analysis v. v2.3 2021-07-08T02:49:04.219 South Korea Human sputum PacBio RSII Korea University 187.0x 97.48 98.34 0 100 0.23 GCF_019334745.1 2271 2343 2343 15 8 48 1 Rothia_aeria_homd_HMT_188 GCA_019334765.1 HMT-476 ATCC 29256 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava ATCC 29256 1 2291167 49.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/334/765/GCA_019334765.1_ASM1933476v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA744665 547045 SAMN20114574 ASM1933476v1 Complete Genome PacBio SMRT Analysis v. v2.3 2021-07-08T02:59:03.826 South Korea Human sputum PacBio RSII Korea University 420.4x 87.21 99.92 1.81 100 1.31 GCF_019334765.1 2137 2231 2231 22 12 59 1 Neisseria_subflava_homd_HMT_476 GCA_019334805.1 HMT-681 LPB0405 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 LPB0405 1 2283079 59.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/334/805/GCA_019334805.1_ASM1933480v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_C PRJNA744669 43675 SAMN20114750 ASM1933480v1 Complete Genome PacBio SMRT Analysis v. v2.3 2021-07-08T04:50:06.316 South Korea Human sputum PacBio RSII Korea University 219.2x 93.74 99.33 2.83 100 2.33 GCF_019334805.1 1752 1824 1824 11 10 50 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_019334805.1 HMT-681 LPB0405 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 LPB0405 1 2283079 59.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/334/805/GCA_019334805.1_ASM1933480v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_C PRJNA744669 43675 SAMN20114750 ASM1933480v1 Complete Genome PacBio SMRT Analysis v. v2.3 2021-07-08T04:50:06.316 South Korea Human sputum PacBio RSII Korea University 219.2x 93.74 99.33 2.83 100 2.33 GCF_019334805.1 1752 1824 1824 11 10 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_019336935.1 HMT-576 11-6117 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus 11-6117 70 1869421 37.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/336/935/GCA_019336935.1_ASM1933693v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA748382 76860 SAMN20327117 ASM1933693v1 Contig SPAdes v. 3.11.1 2021-07-20T12:28:03.783 USA: Miami, FL eye Illumina NextSeq University of Mississippi Medical Center 213.0x 97.64 99 0.02 99.99 0.1 GCF_019336935.1 JAHWWC01 1805 1884 1884 32 3 43 1 Streptococcus_constellatus_homd_HMT_576 GCA_019342945.1 HMT-745 ABC208 Named Cultivated Pathogen (Abundance: Scarce) HMT-745 Streptococcus pyogenes ABC208 1 1866583 38.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/342/945/GCA_019342945.1_ASM1934294v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes PRJNA609136 1314 SAMN14234602 ASM1934294v1 Complete Genome Unicycler v. 0.4.6 2020-02-27T18:16:49.197 USA Not collected Illumina MiSeq; ONT GridION UTHSC/McGovern Medical School 195.0x 98.69 99.85 0 99.99 0.06 GCF_019342945.1 1781 1920 1920 53 18 67 1 Streptococcus_pyogenes_homd_HMT_745 GCA_019343495.1 HMT-005 H7 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-005 Acinetobacter lwoffii H7 6 3528101 42.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/343/495/GCA_019343495.1_ASM1934349v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter lwoffii_P PRJNA718681 28090 SAMN18558474 ASM1934349v1 Complete Genome canu v. 2.1 2021-03-30T22:23:05.627 China:Wenzhou chickens Illumina HiSeq; PacBio RSII Wenzhou Medical University 100.0x 95.97 99.93 0.14 100 0.1 GCF_019343495.1 3272 3404 3404 24 21 86 1 Acinetobacter_lwoffii_homd_HMT_005 GCA_019349055.1 HMT-120 C128_MRS_SCCmec type VII/X Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus C128_MRS_SCCmec type VII/X 5 2842834 32.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/349/055/GCA_019349055.1_ASM1934905v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA607920 1283 SAMN14151386 ASM1934905v1 Contig canu, pilon (snp, indel), home made python script for homopolymer errors correction v. 1.8 (canu), 1 2020-02-21T09:00:06.436 Belgium milk Oxford Nanopore; Illumina NovaSeq University of Liege-Faculty of veterinary medicine 99.35 98.99 6.82 99.99 4.92 JAASKZ01 2926 3118 3118 110 19 62 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_019375485.1 HMT-469 SCHI0034.S.9 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0034.S.9 52 3473651 40.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/485/GCA_019375485.1_ASM1937548v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA742126 28132 SAMN19926198 ASM1937548v1 Contig MGAP v. 1 2021-06-28T23:40:07.593 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 120.0x 96.39 99.32 0.34 99.96 0.06 GCF_019375485.1 JAHXCB01 2855 2923 2923 8 10 49 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019375525.1 HMT-469 SCHI0043.S.3 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0043.S.3 43 3293085 40.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/525/GCA_019375525.1_ASM1937552v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA742126 28132 SAMN19926196 ASM1937552v1 Contig MGAP v. 1 2021-06-28T23:40:07.570 Australia: Brisbane Bronchial washing (contralateral lung; no tumour) Illumina NextSeq University of the Sunshine Coast 136.0x 96.81 99.32 0.45 99.99 0.19 GCF_019375525.1 JAHXCC01 2688 2755 2755 9 4 53 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019375575.1 HMT-469 SCHI0047.S.2 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0047.S.2 42 3112350 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/575/GCA_019375575.1_ASM1937557v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_B PRJNA742126 28132 SAMN19926189 ASM1937557v1 Contig MGAP v. 1 2021-06-28T23:40:07.486 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 145.0x 95.64 99.32 0 99.94 0.04 GCF_019375575.1 JAHXCE01 2448 2508 2508 8 6 45 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019375585.1 HMT-298 SCHI0034.S.5 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola SCHI0034.S.5 43 3018404 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/585/GCA_019375585.1_ASM1937558v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA742126 470565 SAMN19926185 ASM1937558v1 Contig MGAP v. 1 2021-06-28T23:40:07.443 Australia: Brisbane Bronchial washing (contralateral lung; no tumour) Illumina NextSeq University of the Sunshine Coast 178.0x 97.87 99.32 0 99.95 0.01 GCF_019375585.1 JAHXCF01 2506 2601 2601 35 9 50 1 Prevotella_histicola_homd_HMT_298 GCA_019375595.1 HMT-693 SCHI0028.S.5 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens SCHI0028.S.5 108 3147434 42.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/595/GCA_019375595.1_ASM1937559v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA742126 28133 SAMN19926184 ASM1937559v1 Contig MGAP v. 1 2021-06-28T23:40:07.430 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 203.0x 98.13 99.65 0.68 99.97 0.61 GCF_019375595.1 JAHXCG01 2755 2816 2816 7 9 44 1 Prevotella_nigrescens_homd_HMT_693 GCA_019375605.1 HMT-469 SCHI0043.S.2 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0043.S.2 44 3265850 40.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/605/GCA_019375605.1_ASM1937560v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA742126 28132 SAMN19926195 ASM1937560v1 Contig MGAP v. 1 2021-06-28T23:40:07.557 Australia: Brisbane Bronchial washing (lung tumour site) Illumina NextSeq University of the Sunshine Coast 88.0x 96.82 99.32 0.45 99.99 0.18 GCF_019375605.1 JAHXCD01 2660 2723 2723 9 6 47 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019375655.1 HMT-298 SCHI0028.S.4 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola SCHI0028.S.4 48 3023315 41.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/655/GCA_019375655.1_ASM1937565v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA742126 470565 SAMN19926183 ASM1937565v1 Contig MGAP v. 1 2021-06-28T23:40:07.417 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 143.0x 97.83 99.32 0.41 99.97 0.98 GCF_019375655.1 JAHXCH01 2457 2550 2550 28 16 47 2 Prevotella_histicola_homd_HMT_298 GCA_019375675.1 HMT-291 SCHI0027.S.12 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola SCHI0027.S.12 94 3171577 49.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/675/GCA_019375675.1_ASM1937567v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA742126 28129 SAMN19926179 ASM1937567v1 Contig MGAP v. 1 2021-06-28T23:40:07.370 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 135.0x 98.14 99.32 0 99.98 0.39 GCF_019375675.1 JAHXCL01 2633 2715 2715 23 8 50 1 Prevotella_denticola_homd_HMT_291 GCA_019375695.1 HMT-298 SCHI0028.S.1 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola SCHI0028.S.1 33 2969307 41.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/695/GCA_019375695.1_ASM1937569v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA742126 470565 SAMN19926182 ASM1937569v1 Contig MGAP v. 1 2021-06-28T23:40:07.407 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 306.0x 97.83 99.32 0.34 99.93 0 GCF_019375695.1 JAHXCI01 2413 2498 2498 28 7 49 1 Prevotella_histicola_homd_HMT_298 GCA_019375715.1 HMT-469 SCHI0027.S.13 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0027.S.13 86 3421699 40.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/715/GCA_019375715.1_ASM1937571v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_B PRJNA742126 28132 SAMN19926180 ASM1937571v1 Contig MGAP v. 1 2021-06-28T23:40:07.383 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 147.0x 95.22 99.16 0.84 99.98 0.26 GCF_019375715.1 JAHXCK01 2791 2854 2854 9 9 44 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019375725.1 HMT-291 SCHI0027.S.14 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola SCHI0027.S.14 85 3098670 49.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/725/GCA_019375725.1_ASM1937572v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA742126 28129 SAMN19926181 ASM1937572v1 Contig MGAP v. 1 2021-06-28T23:40:07.393 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 133.0x 98.14 99.32 0 99.98 0.39 GCF_019375725.1 JAHXCJ01 2559 2650 2650 22 16 52 1 Prevotella_denticola_homd_HMT_291 GCA_019375745.1 HMT-469 SCHI0027.S.11 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0027.S.11 74 3307101 40.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/745/GCA_019375745.1_ASM1937574v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_B PRJNA742126 28132 SAMN19926178 ASM1937574v1 Contig MGAP v. 1 2021-06-28T23:40:07.357 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 132.0x 95.22 99.16 0.34 99.98 0.01 GCF_019375745.1 JAHXCM01 2631 2699 2699 9 9 49 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019375775.1 HMT-469 SCHI0027.S.9 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0027.S.9 97 3348634 40.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/775/GCA_019375775.1_ASM1937577v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica_B PRJNA742126 28132 SAMN19926177 ASM1937577v1 Contig MGAP v. 1 2021-06-28T23:40:07.347 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 396.0x 95.21 99.16 1.01 99.97 0.01 GCF_019375775.1 JAHXCN01 2677 2741 2741 9 8 46 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019375795.1 HMT-307 SCHI0018.S.9 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae SCHI0018.S.9 53 3438557 41.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/795/GCA_019375795.1_ASM1937579v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA742126 228604 SAMN19926173 ASM1937579v1 Contig MGAP v. 1 2021-06-28T23:40:07.293 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 172.0x 97.33 99.32 0.45 99.97 0.24 GCF_019375795.1 JAHXCR01 2880 2957 2957 14 9 52 2 Segatella_salivae_homd_HMT_307 GCA_019375815.1 HMT-469 SCHI0027.S.6 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0027.S.6 63 3422092 40.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/815/GCA_019375815.1_ASM1937581v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA742126 28132 SAMN19926175 ASM1937581v1 Contig MGAP v. 1 2021-06-28T23:40:07.320 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 146.0x 96.66 99.32 0.25 99.95 0.14 GCF_019375815.1 JAHXCP01 2814 2880 2880 9 8 48 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019375835.1 HMT-298 SCHI0027.S.7 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola SCHI0027.S.7 78 3009370 41.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/835/GCA_019375835.1_ASM1937583v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA742126 470565 SAMN19926176 ASM1937583v1 Contig SPAdes v. 3.15.1 2021-06-28T23:40:07.333 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 150.0x 97.64 99.32 0 99.92 0.02 GCF_019375835.1 JAHXCO01 2463 2555 2555 36 4 51 1 Prevotella_histicola_homd_HMT_298 GCA_019375855.1 HMT-313 SCHI0011.S.13 Named Cultivated Oral (Abundance: High) HMT-313 Prevotella jejuni SCHI0011.S.13 111 3930832 41.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/855/GCA_019375855.1_ASM1937585v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella jejuni PRJNA742126 1177574 SAMN19926172 ASM1937585v1 Contig MGAP v. 1 2021-06-28T23:40:07.283 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 105.0x 96.71 99.16 0 100 0.05 GCF_019375855.1 JAHXCS01 3168 3233 3233 7 8 49 1 Prevotella_jejuni_homd_HMT_313 GCA_019375865.1 HMT-291 SCHI0021.S.9 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola SCHI0021.S.9 47 3249566 49.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/865/GCA_019375865.1_ASM1937586v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA742126 28129 SAMN19926174 ASM1937586v1 Contig MGAP v. 1 2021-06-28T23:40:07.307 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 117.0x 97.81 99.32 0.08 99.95 0.43 GCF_019375865.1 JAHXCQ01 2689 2756 2756 9 9 48 1 Prevotella_denticola_homd_HMT_291 GCA_019375895.1 HMT-298 SCHI0009.S.6 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola SCHI0009.S.6 132 3124769 41.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/895/GCA_019375895.1_ASM1937589v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA742126 470565 SAMN19926169 ASM1937589v1 Contig SPAdes v. 3.15.1 2021-06-28T23:40:07.247 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 214.0x 97.4 99.32 0.11 99.99 0.01 GCF_019375895.1 JAHXCV01 2564 2641 2641 24 3 49 1 Prevotella_histicola_homd_HMT_298 GCA_019375915.1 HMT-299 SCHI0011.S.12 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis SCHI0011.S.12 11 2627131 38.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/915/GCA_019375915.1_ASM1937591v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA742126 425941 SAMN19926171 ASM1937591v1 Contig MGAP v. 1 2021-06-28T23:40:07.270 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 122.0x 97.1 99.16 0 99.97 0.01 GCF_019375915.1 JAHXCT01 2041 2104 2104 6 10 46 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_019375935.1 HMT-469 SCHI0009.S.5 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0009.S.5 69 3349000 40.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/935/GCA_019375935.1_ASM1937593v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA742126 28132 SAMN19926168 ASM1937593v1 Contig MGAP v. 1 2021-06-28T23:40:07.233 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 355.0x 96.74 99.32 0 99.98 0.02 GCF_019375935.1 JAHXCW01 2663 2734 2734 9 11 50 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019375945.1 HMT-299 SCHI0010.S.3 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis SCHI0010.S.3 11 2722841 38.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/945/GCA_019375945.1_ASM1937594v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA742126 425941 SAMN19926170 ASM1937594v1 Contig MGAP v. 1 2021-06-28T23:40:07.256 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 181.0x 97.38 99.16 0 99.92 0 GCF_019375945.1 JAHXCU01 2132 2195 2195 5 8 49 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_019375975.1 HMT-298 SCHI0006.S.13 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola SCHI0006.S.13 74 2954595 41.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/975/GCA_019375975.1_ASM1937597v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA742126 470565 SAMN19926167 ASM1937597v1 Contig SPAdes v. 3.15.1 2021-06-28T23:40:07.213 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 219.0x 97.9 99.32 0 99.94 0 GCF_019375975.1 JAHXCX01 2410 2470 2470 7 3 49 1 Prevotella_histicola_homd_HMT_298 GCA_019391735.1 HMT-469 SCHI0049.S.1 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0049.S.1 62 3285599 40.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/735/GCA_019391735.1_ASM1939173v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA742126 28132 SAMN19926201 ASM1939173v1 Contig MGAP v. 1 2021-06-28T23:40:07.630 Australia: Brisbane Bronchial washing (contralateral lung; no tumour) Illumina NextSeq University of the Sunshine Coast 82.0x 96.6 99.32 0 99.92 0.01 GCF_019391735.1 JAHXQW01 2621 2691 2691 12 7 50 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019391755.1 HMT-560 SCHI0047.S.4 Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae SCHI0047.S.4 45 3253748 50.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/755/GCA_019391755.1_ASM1939175v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJNA742126 28126 SAMN19926200 ASM1939175v1 Contig MGAP v. 1 2021-06-28T23:40:07.620 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 115.0x 98.53 99.31 0.28 99.95 0 GCF_019391755.1 JAHXQX01 2691 2756 2756 6 9 49 1 Segatella_buccae_homd_HMT_560 GCA_019391775.1 HMT-469 SCHI0044.S.1 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0044.S.1 36 3309181 40.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/775/GCA_019391775.1_ASM1939177v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA742126 28132 SAMN19926197 ASM1939177v1 Contig MGAP v. 1 2021-06-28T23:40:07.583 Australia: Brisbane Bronchial washing (contralateral lung; no tumour) Illumina NextSeq University of the Sunshine Coast 176.0x 96.63 99.32 0.11 99.94 0.02 GCF_019391775.1 JAHXQZ01 2661 2728 2728 10 9 47 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019391785.1 HMT-307 SCHI0034.S.8 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae SCHI0034.S.8 67 3402911 41.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/785/GCA_019391785.1_ASM1939178v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA742126 228604 SAMN19926199 ASM1939178v1 Contig MGAP v. 1 2021-06-28T23:40:07.606 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 73.0x 97.48 99.32 0.17 99.93 0.03 GCF_019391785.1 JAHXQY01 2867 2943 2943 10 12 53 1 Segatella_salivae_homd_HMT_307 GCA_019391815.1 HMT-469 SCHI0043.S.1 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SCHI0043.S.1 40 3280014 40.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/815/GCA_019391815.1_ASM1939181v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA742126 28132 SAMN19926194 ASM1939181v1 Contig MGAP v. 1 2021-06-28T23:40:07.547 Australia: Brisbane Bronchial washing (lung tumour site) Illumina NextSeq University of the Sunshine Coast 122.0x 96.83 99.32 0.68 99.99 0.24 GCF_019391815.1 JAHXRA01 2690 2756 2756 9 7 49 1 Prevotella_melaninogenica_homd_HMT_469 GCA_019391835.1 HMT-299 SCHI0042.S.5 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis SCHI0042.S.5 21 2593621 38.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/835/GCA_019391835.1_ASM1939183v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA742126 425941 SAMN19926193 ASM1939183v1 Contig MGAP v. 1 2021-06-28T23:40:07.533 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 140.0x 96.91 99.32 0 99.9 0.01 GCF_019391835.1 JAHXRB01 2025 2088 2088 5 11 46 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_019391855.1 HMT-291 SCHI0042.S.4 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola SCHI0042.S.4 59 3100558 49.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/855/GCA_019391855.1_ASM1939185v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA742126 28129 SAMN19926192 ASM1939185v1 Contig MGAP v. 1 2021-06-28T23:40:07.523 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 140.0x 98 99.32 0.2 99.93 0.27 GCF_019391855.1 JAHXRC01 2547 2614 2614 8 10 48 1 Prevotella_denticola_homd_HMT_291 GCA_019391875.1 HMT-307 SCHI0034.S.11 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae SCHI0034.S.11 46 3275508 41.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/875/GCA_019391875.1_ASM1939187v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA742126 228604 SAMN19926191 ASM1939187v1 Contig MGAP v. 1 2021-06-28T23:40:07.510 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 152.0x 98.14 98.99 0.34 99.93 0.6 GCF_019391875.1 JAHXRD01 2757 2835 2835 11 14 52 1 Segatella_salivae_homd_HMT_307 GCA_019391885.1 HMT-298 SCHI0034.S.10 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola SCHI0034.S.10 52 3119736 41.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/885/GCA_019391885.1_ASM1939188v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA742126 470565 SAMN19926190 ASM1939188v1 Contig MGAP v. 1 2021-06-28T23:40:07.500 Australia: Brisbane sputum Illumina NextSeq University of the Sunshine Coast 134.0x 97.9 99.32 0 99.98 0.01 GCF_019391885.1 JAHXRE01 2606 2703 2703 34 10 52 1 Prevotella_histicola_homd_HMT_298 GCA_019391915.1 HMT-307 SCHI0047.S.3 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae SCHI0047.S.3 50 3273498 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/915/GCA_019391915.1_ASM1939191v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJNA742126 228604 SAMN19926188 ASM1939191v1 Contig MGAP v. 1 2021-06-28T23:40:07.476 Australia: Brisbane Bronchial washing (contralateral lung; no tumour) Illumina NextSeq University of the Sunshine Coast 101.0x 98.14 99.32 0.51 99.93 0.58 GCF_019391915.1 JAHXRF01 2753 2830 2830 11 13 52 1 Segatella_salivae_homd_HMT_307 GCA_019391935.1 HMT-298 SCHI0034.S.6 Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola SCHI0034.S.6 48 3019506 41.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/391/935/GCA_019391935.1_ASM1939193v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJNA742126 470565 SAMN19926186 ASM1939193v1 Contig MGAP v. 1 2021-06-28T23:40:07.453 Australia: Brisbane Bronchial washing (contralateral lung; no tumour) Illumina NextSeq University of the Sunshine Coast 213.0x 97.85 99.32 0.34 99.93 0.01 GCF_019391935.1 JAHXRH01 2509 2602 2602 35 9 48 1 Prevotella_histicola_homd_HMT_298 GCA_019400095.1 HMT-814 C17-7 Named Cultivated Vaginal (Abundance: High) HMT-814 Fannyhessea vaginae C17-7 9 1443999 42.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/400/095/GCA_019400095.1_ASM1940009v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Fannyhessea;s__Fannyhessea vaginae PRJNA630342 82135 SAMN14832749 ASM1940009v1 Contig IDBA_UD v. v. 1.1.1 2020-05-05T00:14:06.400 China: Beijing vaginal Illumina HiSeq Institute Of Microbiology Chinese Academy of Sciences 100.0x 95.57 100 0 97.94 0.26 GCF_019400095.1 JACUVO01 1208 1264 1264 11 0 44 1 Fannyhessea_vaginae_homd_HMT_814 GCA_019416205.1 HMT-105 HRGM_Genome_3787 Named Cultivated Oral (Abundance: Low) "HMT-105 Peptostreptococcaceae [G1 ""Eubacterium""] infirmum HRGM_Genome_3787" 269 1264423 41.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/416/205/GCA_019416205.1_ASM1941620v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B infirmum PRJNA730993 56774 SAMN19225258 ASM1941620v1 Contig megahit v. 1.2.8 2021-05-16T08:14:18.023 Japan feces Illumina HiSeq Yonsei University 6.1x 80.91 0.02 70.81 2.27 DXXS01 1084 1114 1114 22 0 7 1 Anaerovoracaceae__G1__infirmum_homd_HMT_105 GCA_019416225.1 HMT-042 HRGM_Genome_3781 Named Cultivated Oral (Abundance: Medium) HMT-042 Mogibacterium timidum HRGM_Genome_3781 21 1497968 45.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/416/225/GCA_019416225.1_ASM1941622v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium timidum PRJNA730993 2049035 SAMN19225257 ASM1941622v1 Contig megahit v. 1.2.8 2021-05-16T08:14:18.010 Japan feces Illumina HiSeq Yonsei University 18.7x 95.04 0 86.63 0.07 GCF_019416225.1 DXXR01 1319 1371 1371 10 2 39 1 Mogibacterium_timidum_homd_HMT_042 GCA_019417565.1 HMT-593 HRGM_Genome_2975 Named Cultivated Oral (Abundance: Medium) HMT-593 Mogibacterium diversum HRGM_Genome_2975 68 1561857 41.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/417/565/GCA_019417565.1_ASM1941756v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium diversum PRJNA730993 114527 SAMN19225103 ASM1941756v1 Scaffold SPAdes v. 3.13.0 2021-05-16T08:14:15.830 Japan feces Illumina HiSeq Yonsei University 7.6x 97.45 90.07 0 88.1 0.09 GCF_019417565.1 DXVC01 1410 1447 1447 11 2 23 1 Mogibacterium_diversum_homd_HMT_593 GCA_019423945.1 HMT-681 HRGM_Genome_1788 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HRGM_Genome_1788 66 2270973 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/423/945/GCA_019423945.1_ASM1942394v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_C PRJNA678426 1885016 SAMN19224836 ASM1942394v1 Scaffold SPAdes v. 3.13.0 2021-05-16T08:14:12.100 South Korea: Seoul feces Illumina HiSeq Yonsei University 16.4x 99 0 100 0.77 GCF_019423945.1 JAHZAJ01 1765 1832 1832 12 3 51 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_019423945.1 HMT-681 HRGM_Genome_1788 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HRGM_Genome_1788 66 2270973 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/423/945/GCA_019423945.1_ASM1942394v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_C PRJNA678426 1885016 SAMN19224836 ASM1942394v1 Scaffold SPAdes v. 3.13.0 2021-05-16T08:14:12.100 South Korea: Seoul feces Illumina HiSeq Yonsei University 16.4x 99 0 100 0.77 GCF_019423945.1 JAHZAJ01 1765 1832 1832 12 3 51 1 Rothia_mucilaginosa_HMT_147_681 GCA_019425065.1 HMT-887 HRGM_Genome_0338 Named Cultivated Oral (Abundance: Scarce) HMT-887 Veillonella denticariosi HRGM_Genome_0338 155 1687489 43.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/425/065/GCA_019425065.1_ASM1942506v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella denticariosi PRJNA678426 1926307 SAMN19224576 ASM1942506v1 Scaffold SPAdes v. 3.13.0 2021-05-16T08:14:08.503 South Korea: Seoul feces Illumina HiSeq Yonsei University 4.8x 89.79 0 85.18 0.63 JAHYYG01 1512 1532 1532 12 0 8 0 Veillonella_denticariosi_homd_HMT_887 GCA_019425175.1 HMT-172 HRGM_Genome_0300 Unnamed Cultivated Oral (Abundance: High) HMT-172 Schaalia sp. HMT-172 HRGM_Genome_0300 119 2331782 66.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/425/175/GCA_019425175.1_ASM1942517v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000466265 PRJNA678426 29317 SAMN19224570 ASM1942517v1 Scaffold SPAdes v. 3.13.0 2021-05-16T08:14:08.273 South Korea: Seoul feces Illumina HiSeq Yonsei University 4.8x 95.25 2.13 99.35 0.68 GCF_019425175.1 JAHYYC01 1926 1985 1985 9 0 49 1 Schaalia_sp_HMT_172_homd_HMT_172 GCA_019426365.1 HMT-120 B Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus B 48 2668788 32.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/426/365/GCA_019426365.1_ASM1942636v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA736619 1283 SAMN19655105 ASM1942636v1 Contig SPAdes v. 3.15.0; SuperReads from Masurca v. 3.4.1; Megahit v. 1.2.9; Tadpole from BBTools v. 38.87; 2021-06-10T09:20:06.943 China: Jiangsu, Suzhou sputum Illumina HiSeq Nanjing university 500.0x 99.11 99.62 2.84 100 2.7 GCF_019426365.1 JAHLXS01 2552 2711 2711 93 8 57 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_019426385.1 HMT-120 A Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus A 42 2572961 32.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/426/385/GCA_019426385.1_ASM1942638v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA736619 1283 SAMN19655104 ASM1942638v1 Contig SPAdes v. 3.15.0; SuperReads from Masurca v. 3.4.1; Megahit v. 1.2.9; Tadpole from BBTools v. 38.87; 2021-06-10T09:20:06.930 China: Jiangsu, Suzhou sputum Illumina HiSeq Nanjing university 500.0x 99.11 99.62 1.7 99.99 2.26 GCF_019426385.1 JAHLXT01 2505 2658 2658 92 7 53 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_019426405.1 HMT-120 D Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus D 51 2591907 32.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/426/405/GCA_019426405.1_ASM1942640v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA736619 1283 SAMN19655107 ASM1942640v1 Contig SPAdes v. 3.15.0; SuperReads from Masurca v. 3.4.1; Megahit v. 1.2.9; Tadpole from BBTools v. 38.87; 2021-06-10T09:20:06.970 China: Jiangsu, Suzhou sputum Illumina HiSeq Nanjing university 500.0x 99.23 99.62 2.94 99.99 3.31 GCF_019426405.1 JAHLXQ01 2516 2679 2679 91 10 61 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_019449375.1 HMT-622 14-4065 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii 14-4065 65 2249747 40.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/449/375/GCA_019449375.1_ASM1944937v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA728738 1302 SAMN19102748 ASM1944937v1 Contig SPAdes v. 3.11.1 2021-05-10T18:18:03.683 USA eye Illumina NextSeq University of Mississippi Medical Center 179.0x 95.85 100 0 99.99 0.05 GCF_019449375.1 JAHZSL01 2137 2216 2216 32 3 43 1 Streptococcus_gordonii_homd_HMT_622 GCA_019456715.1 HMT-425 CCUG 50868 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 50868 94 2182617 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/456/715/GCA_019456715.1_ASM1945671v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA662229 257758 SAMN16078583 ASM1945671v1 Scaffold SPAdes v. 3.13.0 2020-09-08T08:42:06.347 Canada: Halifax sputum Illumina MiSeq Region Zealand 107.0x 97.54 99.62 0.2 99.99 0.11 GCF_019456715.1 JACVSW01 2130 2241 2241 65 3 42 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_019456735.1 HMT-425 CCUG 50867 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 50867 89 2150757 39.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/456/735/GCA_019456735.1_ASM1945673v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA662229 257758 SAMN16078584 ASM1945673v1 Scaffold SPAdes v. 3.13.0 2020-09-08T08:42:06.360 Canada: Halifax sputum Illumina MiSeq Region Zealand 112.0x 97.71 99.82 0.2 99.99 0.12 GCF_019456735.1 JACVSV01 2102 2212 2212 66 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_019456755.1 HMT-425 CCUG 50866 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 50866 96 2189384 39.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/456/755/GCA_019456755.1_ASM1945675v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA662229 257758 SAMN16078585 ASM1945675v1 Scaffold SPAdes v. 3.13.0 2020-09-08T08:42:06.377 Canada: Halifax sputum Illumina MiSeq Region Zealand 99.0x 97.2 99.82 0.2 99.98 0.15 GCF_019456755.1 JACVSU01 2148 2254 2254 70 3 32 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_019456815.1 HMT-425 CCUG 50869 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 50869 88 2077325 39.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/456/815/GCA_019456815.1_ASM1945681v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA662229 257758 SAMN16078582 ASM1945681v1 Scaffold SPAdes v. 3.13.0 2020-09-08T08:42:06.330 Canada: Halifax sputum Illumina MiSeq Region Zealand 110.0x 98.75 99.82 0.2 99.98 0.08 GCF_019456815.1 JACVSX01 2000 2110 2110 70 3 36 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_019456835.1 HMT-425 SLA269 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae SLA269 97 2166845 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/456/835/GCA_019456835.1_ASM1945683v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA662229 257758 SAMN16078579 ASM1945683v1 Scaffold SPAdes v. 3.13.0 2020-09-08T08:42:06.280 Denmark: Slagelse sputum Illumina MiSeq Region Zealand 83.0x 97.3 99.82 0.2 99.98 0.17 GCF_019456835.1 JACVTA01 2094 2200 2200 62 3 40 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_019456855.1 HMT-425 CCUG 50870 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae CCUG 50870 94 2151699 39.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/456/855/GCA_019456855.1_ASM1945685v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA662229 257758 SAMN16078581 ASM1945685v1 Scaffold SPAdes v. 3.13.0 2020-09-08T08:42:06.313 Canada: Halifax sputum Illumina MiSeq Region Zealand 90.0x 97.75 99.68 0.2 100 0.05 GCF_019456855.1 JACVSY01 2080 2191 2191 65 3 42 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_019456875.1 HMT-425 SLA982 Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae SLA982 92 2187633 39.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/456/875/GCA_019456875.1_ASM1945687v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA662229 257758 SAMN16078580 ASM1945687v1 Scaffold SPAdes v. 3.13.0 2020-09-08T08:42:06.297 Denmark: Slagelse sputum Illumina MiSeq Region Zealand 99.0x 97.26 99.55 0.2 99.98 0.1 GCF_019456875.1 JACVSZ01 2143 2255 2255 66 3 42 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_019551945.1 HMT-953 THCT14E2 Named Cultivated Oral (Abundance: Medium) HMT-953 Fusobacterium hwasookii THCT14E2 1 2287114 27.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/551/945/GCA_019551945.1_ASM1955194v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium hwasookii PRJNA704481 1583098 SAMN18042969 ASM1955194v1 Complete Genome Celera Assembler v. v8.3 2021-02-24T00:41:05.400 China: Shanghai Gut Illumina HiSeq; PacBio RSII Shanghai Tenth Peoples Hospital, Tongji University School of Medicine 97.7 100 0 100 0.08 GCF_019551945.1 2111 2193 2193 19 15 47 1 Fusobacterium_hwasookii_homd_HMT_953 GCA_019552005.1 HMT-200 THCT14A3 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii THCT14A3 1 2052554 27.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/552/005/GCA_019552005.1_ASM1955200v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA704481 155615 SAMN18042968 ASM1955200v1 Complete Genome Celera Assembler v. v8.3 2021-02-24T00:41:05.383 China: Shanghai Gut Illumina HiSeq; PacBio RSII Shanghai Tenth Peoples Hospital, Tongji University School of Medicine 97.54 100 0 100 0.06 GCF_019552005.1 1893 1976 1976 20 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_019552045.1 HMT-202 THCT15E1 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum THCT15E1 2 2526214 26.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/552/045/GCA_019552045.1_ASM1955204v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA704481 76857 SAMN18042967 ASM1955204v1 Complete Genome Celera Assembler v. v8.3 2021-02-24T00:41:05.366 China: Shanghai Gut Illumina HiSeq; PacBio RSII Shanghai Tenth Peoples Hospital, Tongji University School of Medicine 96.95 100 0 100 0.67 GCF_019552045.1 2374 2461 2461 24 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_019552065.1 HMT-202 THCT7E2 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum THCT7E2 1 2547341 27.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/552/065/GCA_019552065.1_ASM1955206v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA704481 76857 SAMN18042966 ASM1955206v1 Complete Genome Celera Assembler v. v8.3 2021-02-24T00:41:05.343 China: Shanghai Gut Illumina HiSeq; PacBio RSII Shanghai Tenth Peoples Hospital, Tongji University School of Medicine 97.14 100 0 100 0.14 GCF_019552065.1 2372 2461 2461 26 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_019552085.1 HMT-420 THCT7A2 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis THCT7A2 1 2515153 27.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/552/085/GCA_019552085.1_ASM1955208v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA704481 76859 SAMN18042965 ASM1955208v1 Complete Genome Celera Assembler v. v8.3 2021-02-24T00:41:05.293 China: Shanghai Gut Illumina HiSeq; PacBio RSII Shanghai Tenth Peoples Hospital, Tongji University School of Medicine 96.75 100 0 100 0.08 GCF_019552085.1 2303 2388 2388 23 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_019552105.1 HMT-420 THCT6B3 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis THCT6B3 1 2268559 27.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/552/105/GCA_019552105.1_ASM1955210v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA704481 76859 SAMN18042964 ASM1955210v1 Complete Genome Celera Assembler v. v8.3 2021-02-24T00:41:05.190 China: Shanghai Gut Illumina HiSeq; PacBio RSII Shanghai Tenth Peoples Hospital, Tongji University School of Medicine 96.8 100 0 100 0.08 GCF_019552105.1 2087 2167 2167 18 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_019552125.1 HMT-420 THCT5A4 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis THCT5A4 1 2490990 27.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/552/125/GCA_019552125.1_ASM1955212v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA704481 76859 SAMN18042963 ASM1955212v1 Complete Genome Celera Assembler v. v8.3 2021-02-24T00:41:05.020 China: Shanghai Gut Illumina HiSeq; PacBio RSII Shanghai Tenth Peoples Hospital, Tongji University School of Medicine 96.82 100 0 100 0.21 GCF_019552125.1 2335 2419 2419 21 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_019583395.1 HMT-202 9571 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum 9571 19 2532746 26.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/583/395/GCA_019583395.1_ASM1958339v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA540768 851 SAMN11557469 ASM1958339v1 Scaffold SPAdes v. 3.13.0 2019-05-02T08:29:03.707 Netherlands: Leiden clinical sample Illumina MiSeq Seqomics Ltd. 454.0x 92.38 100 0 99.99 0.57 GCF_019583395.1 SZUT01 2384 2454 2454 26 5 38 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_019602835.1 HMT-209 MNS-0 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus MNS-0 3 3997592 66.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/602/835/GCA_019602835.1_ASM1960283v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA752432 2866628 SAMN20595319 ASM1960283v1 Complete Genome AS-miseeq v. v20150522; CANU v. v1.4 2021-08-05T22:09:04.990 China:binzhou waste water Illumina MiSeq; PacBio Shanghai Jiaotong University 366.0x 99.98 0.85 100 0.41 GCF_019602835.1 3724 3815 3815 28 9 53 1 Acidovorax_ebreus_homd_HMT_209 GCA_019653615.1 HMT-550 RGB-095930 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus RGB-095930 1 2904556 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/653/615/GCA_019653615.1_ASM1965361v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA739061 1280 SAMN19770946 ASM1965361v1 Complete Genome Flye v. 2.8-b1674 2021-06-18T04:32:05.477 Germany: Regensburg, Bavaria swab Oxford Nanopore MinION; Illumina MiniSeq Leibniz Institute of Photonic Technology (IPHT) 169.0x 99.1 99.48 0.64 100 0.33 GCF_019653615.1 2735 2930 2930 118 19 57 1 Staphylococcus_aureus_homd_HMT_550 GCA_019665745.1 HMT-565 JY65 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-565 Enterobacter cancerogenus JY65 1 4736684 55.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/665/745/GCA_019665745.1_ASM1966574v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter cancerogenus PRJNA753314 69218 SAMN20693820 ASM1966574v1 Chromosome HGAP v. 1.0 2021-08-10T09:20:05.370 China:Harbin Illumina HiSeq Northeast Forestry University 5.0x 98.93 100 0.19 100 0.01 GCF_019665745.1 4317 4556 4556 143 14 81 1 Enterobacter_cancerogenus_homd_HMT_565 GCA_019685475.1 HMT-567 78/2016 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae 78/2016 30 2610590 33.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/685/475/GCA_019685475.1_ASM1968547v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA593524 29380 SAMN14789684 ASM1968547v1 Contig SPAdes v. 1.13.1 2020-05-01T12:40:15.863 Brazil:Paraiba goat milk Illumina MiSeq LAPOA-Federal University of Paraiba (UFPB) 119.0x 98.67 99.81 0 100 0.02 GCF_019685475.1 JABEMW01 2444 2583 2583 66 11 61 1 Staphylococcus_caprae_homd_HMT_567 GCA_019685795.1 HMT-567 28/2016 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae 28/2016 145 2476032 33.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/685/795/GCA_019685795.1_ASM1968579v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA593524 29380 SAMN14783899 ASM1968579v1 Contig SPAdes v. 1.13.1 2020-04-30T19:13:04.573 Brazil:Paraiba goat milk Illumina MiSeq LAPOA-Federal University of Paraiba (UFPB) 43.0x 98.61 92.56 2.5 94.28 2.34 GCF_019685795.1 JACEVE01 2290 2399 2399 57 3 49 0 Staphylococcus_caprae_homd_HMT_567 GCA_019685855.1 HMT-567 76/2016 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae 76/2016 49 2589900 33.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/685/855/GCA_019685855.1_ASM1968585v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA593524 29380 SAMN14783929 ASM1968585v1 Contig SPAdes v. 1.13.1 2020-04-30T19:53:04.443 Brazil:Paraiba goat milk Illumina MiSeq LAPOA-Federal University of Paraiba (UFPB) 457.0x 98.4 99.67 0 100 0.03 GCF_019685855.1 JABEMV01 2548 2700 2700 83 8 60 1 Staphylococcus_caprae_homd_HMT_567 GCA_019703365.1 HMT-641 CHBN-II-1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-II-1 1 1979718 38.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/365/GCA_019703365.1_ASM1970336v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119525 ASM1970336v1 Complete Genome HGAP v. 2 2021-05-25T01:00:51.723 Japan:Fukuoka PacBio RS II Chiba University 100.0x 99 99.77 0 100 0 GCF_019703365.1 1915 2034 2034 41 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703385.1 HMT-641 CHBN-II-2 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-II-2 1 1979786 38.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/385/GCA_019703385.1_ASM1970338v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119526 ASM1970338v1 Complete Genome HGAP v. 2 2021-05-25T01:00:51.766 Japan:Chiba PacBio RS II Chiba University 100.0x 99 99.77 0 100 0 GCF_019703385.1 1917 2036 2036 41 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703405.1 HMT-641 CHBN-II-3 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-II-3 1 1853393 38.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/405/GCA_019703405.1_ASM1970340v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119527 ASM1970340v1 Complete Genome HGAP v. 2 2021-05-25T01:00:51.803 Japan:Fukuoka PacBio RS II Chiba University 100.0x 97.79 99.72 0.23 100 0 GCF_019703405.1 1736 1848 1848 33 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703425.1 HMT-641 CHBN-II-4 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-II-4 1 1832515 38.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/425/GCA_019703425.1_ASM1970342v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119528 ASM1970342v1 Complete Genome HGAP v. 2 2021-05-25T01:00:51.850 Japan:Fukuoka PacBio RS II Chiba University 100.0x 98.24 99.67 0 100 0 GCF_019703425.1 1721 1832 1832 32 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703455.1 HMT-641 CHBN-II-5 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-II-5 1 1805925 38.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/455/GCA_019703455.1_ASM1970345v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119529 ASM1970345v1 Complete Genome HGAP v. 2 2021-05-25T01:00:51.880 Japan:Fukuoka PacBio RS II Chiba University 100.0x 98.57 99.63 0 100 0 GCF_019703455.1 1684 1795 1795 33 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703495.1 HMT-641 CHBN-II-6 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-II-6 1 1819364 38.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/495/GCA_019703495.1_ASM1970349v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119530 ASM1970349v1 Complete Genome HGAP v. 2 2021-05-25T01:00:51.900 Japan:Chiba PacBio RS II Chiba University 100.0x 98.11 99.77 0 100 0 GCF_019703495.1 1693 1806 1806 33 19 60 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703525.1 HMT-641 CHBN-II-7 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-II-7 1 1886480 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/525/GCA_019703525.1_ASM1970352v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119531 ASM1970352v1 Complete Genome HGAP v. 2 2021-05-25T01:00:51.920 Japan:Fukuoka PacBio RS II Chiba University 100.0x 97.93 99.77 0 100 0 GCF_019703525.1 1783 1897 1897 35 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703545.1 HMT-641 CHBN-II-8 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-II-8 1 1902536 38.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/545/GCA_019703545.1_ASM1970354v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJDB7052 727 SAMD00119532 ASM1970354v1 Complete Genome HGAP v. 2 2021-05-25T01:00:51.940 Japan:Chiba PacBio RS II Chiba University 100.0x 96.9 99.67 0 100 0 GCF_019703545.1 1824 1935 1935 33 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703575.1 HMT-641 CHBN-III-1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-III-1 1 1816076 38.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/575/GCA_019703575.1_ASM1970357v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJDB7052 727 SAMD00119533 ASM1970357v1 Complete Genome HGAP v. 2 2021-05-25T01:00:51.960 Japan:Shizuoka PacBio RS II Chiba University 100.0x 97.19 99.77 0 100 0.02 GCF_019703575.1 1676 1785 1785 32 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703595.1 HMT-641 CHBN-III-2 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-III-2 1 1914722 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/595/GCA_019703595.1_ASM1970359v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_H PRJDB7052 727 SAMD00119534 ASM1970359v1 Complete Genome HGAP v. 2 2021-05-25T01:00:51.986 Japan:Fukuoka PacBio RS II Chiba University 100.0x 97.17 99.77 0.23 100 0.02 GCF_019703595.1 1804 1918 1918 35 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703615.1 HMT-641 CHBN-III-3 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-III-3 1 1810977 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/615/GCA_019703615.1_ASM1970361v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJDB7052 727 SAMD00119535 ASM1970361v1 Complete Genome HGAP v. 2 2021-05-25T01:00:52.010 Japan:Okinawa PacBio RS II Chiba University 100.0x 97.26 99.77 0.23 100 0 GCF_019703615.1 1669 1777 1777 30 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703635.1 HMT-641 CHBN-III-4 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-III-4 1 1818266 38.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/635/GCA_019703635.1_ASM1970363v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119536 ASM1970363v1 Complete Genome HGAP v. 2 2021-05-25T01:00:52.036 Japan:Chiba PacBio RS II Chiba University 100.0x 97.33 99.77 0.23 100 0.2 GCF_019703635.1 1696 1807 1807 34 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703655.1 HMT-641 CHBN-III-5 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-III-5 1 1822115 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/655/GCA_019703655.1_ASM1970365v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJDB7052 727 SAMD00119537 ASM1970365v1 Complete Genome HGAP v. 2 2021-05-25T01:00:52.053 Japan:Nagasaki PacBio RS II Chiba University 100.0x 97.13 99.77 0.23 100 0.02 GCF_019703655.1 1686 1795 1795 32 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703675.1 HMT-641 CHBN-III-6 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-III-6 1 1884503 37.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/675/GCA_019703675.1_ASM1970367v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJDB7052 727 SAMD00119538 ASM1970367v1 Complete Genome HGAP v. 2 2021-05-25T01:00:52.070 Japan:Kagoshima PacBio RS II Chiba University 100.0x 95.42 99.66 0 100 0.33 GCF_019703675.1 1791 1902 1902 34 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703695.1 HMT-641 CHBN-III-7 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-III-7 1 1911890 38.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/695/GCA_019703695.1_ASM1970369v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119539 ASM1970369v1 Complete Genome HGAP v. 2 2021-05-25T01:00:52.090 Japan:Chiba PacBio RS II Chiba University 100.0x 97.16 99.67 0.22 100 0 GCF_019703695.1 1836 1953 1953 38 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703715.1 HMT-641 CHBN-III-8 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-III-8 1 1791343 38.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/715/GCA_019703715.1_ASM1970371v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJDB7052 727 SAMD00119540 ASM1970371v1 Complete Genome HGAP v. 2 2021-05-25T01:00:52.110 Japan:Chiba PacBio RS II Chiba University 100.0x 97.07 99.56 0.58 100 0.59 GCF_019703715.1 1649 1757 1757 31 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703735.1 HMT-641 CHBN-IV-1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-IV-1 1 1882642 38.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/735/GCA_019703735.1_ASM1970373v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJDB7052 727 SAMD00119541 ASM1970373v1 Complete Genome HGAP v. 2 2021-05-25T01:00:52.136 Japan:Kagoshima PacBio RS II Chiba University 100.0x 97.09 99.56 0 100 0.05 GCF_019703735.1 1773 1884 1884 32 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703755.1 HMT-641 CHBN-V-1 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-V-1 1 1953394 38.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/755/GCA_019703755.1_ASM1970375v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_I PRJDB7052 727 SAMD00119542 ASM1970375v1 Complete Genome HGAP v. 2 2021-05-25T01:00:52.160 Japan:Okinawa PacBio RS II Chiba University 100.0x 97.14 99.07 0.22 100 0.3 GCF_019703755.1 1861 1973 1973 34 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703775.1 HMT-641 CHBN-V-2 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-V-2 1 1790924 37.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/775/GCA_019703775.1_ASM1970377v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119543 ASM1970377v1 Complete Genome HGAP v. 2 2021-05-25T01:00:52.186 Japan:Kagoshima PacBio RS II Chiba University 100.0x 97.24 97.26 0 100 0 GCF_019703775.1 1688 1789 1789 33 16 51 1 Haemophilus_influenzae_homd_HMT_641 GCA_019703795.1 HMT-641 CHBN-V-3 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae CHBN-V-3 1 1936686 38.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/703/795/GCA_019703795.1_ASM1970379v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJDB7052 727 SAMD00119544 ASM1970379v1 Complete Genome HGAP v. 2 2021-05-25T01:00:52.206 Japan:Chiba PacBio RS II Chiba University 100.0x 97.24 99.64 0 100 0 GCF_019703795.1 1842 1955 1955 34 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_019704095.1 HMT-552 TP-CV4 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum TP-CV4 1 2616193 63.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/704/095/GCA_019704095.1_ASM1970409v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJDB10833 33010 SAMD00260202 ASM1970409v1 Complete Genome Unicycler v. 0.4.7 2021-06-03T01:00:42.586 Japan DNBSEQ-G400; GridION Tokyo University of Pharmacy and Life Sciences 600.0x 96.38 100 0 99.98 0.24 GCF_019704095.1 2374 2461 2461 28 9 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_019704115.1 HMT-552 TPCV-14 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum TPCV-14 1 2618726 63.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/704/115/GCA_019704115.1_ASM1970411v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJDB10832 33010 SAMD00260203 ASM1970411v1 Complete Genome Unicycler v. 0.4.7 2021-06-03T01:00:43.323 Japan DNBSEQ-G400; GridION Tokyo University of Pharmacy and Life Sciences 690.0x 98.63 100 0 100 0.16 GCF_019704115.1 2356 2436 2436 23 9 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_019704575.1 HMT-193 KB17-24694 Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum KB17-24694 2 2632705 59.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/704/575/GCA_019704575.1_ASM1970457v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJDB11836 2559073 SAMD00330105 ASM1970457v1 Complete Genome Unicycler v. 0.4.7 2021-06-29T01:00:50.286 Japan:Kobe DNBSEQ-G400; GridION Department of Dermatology, The Jikei University School of Medicine 1617.0x 99.94 100 0 99.99 0.34 GCF_019704575.1 2543 2624 2624 24 9 47 1 Cutibacterium_modestum_homd_HMT_193 GCA_019714115.1 HMT-076 AF1741 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri AF1741 23 2551375 32.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/714/115/GCA_019714115.1_ASM1971411v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA738164 1292 SAMN19669667 ASM1971411v1 Contig Shovill v. v1.1.0 2021-06-11T11:58:09.706 USA: Iowa, Iowa City airway culture Illumina MiSeq University of Iowa Hospitals and Clinics 89.6x 96.03 99.72 0 100 0.46 GCF_019714115.1 JAIGOC01 2420 2538 2538 54 5 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_019731115.1 HMT-161 K63 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula K63 7 2074582 38.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/731/115/GCA_019731115.1_ASM1973111v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJNA612981 29466 SAMN14389591 ASM1973111v1 Scaffold SPAdes v. 3.2 2020-03-17T08:10:47.160 China feces Illumina HiSeq Heilongjiang bayi agricultural university 100.0x 96.51 100 0 99.99 0.17 GCF_019731115.1 JAASJV01 1823 1897 1897 24 3 46 1 Veillonella_parvula_homd_HMT_161 GCA_019731485.1 HMT-142 K49_2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-142 Staphylococcus pettenkoferi K49_2 26 2466980 38.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/731/485/GCA_019731485.1_ASM1973148v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pettenkoferi PRJNA612981 170573 SAMN14389573 ASM1973148v1 Contig SPAdes v. 3.2 2020-03-17T08:10:46.763 China feces Illumina HiSeq Heilongjiang bayi agricultural university 100.0x 96.25 98.9 1.8 100 0.01 GCF_019731485.1 JAASJD01 2328 2423 2423 43 2 49 1 Staphylococcus_pettenkoferi_homd_HMT_142 GCA_019733875.1 HMT-543 K27 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus K27 11 1847941 38.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/733/875/GCA_019733875.1_ASM1973387v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA612981 1328 SAMN14389548 ASM1973387v1 Scaffold SPAdes v. 3.2 2020-03-17T08:10:46.213 China feces Illumina HiSeq Heilongjiang bayi agricultural university 100.0x 95.7 100 0 99.98 0.2 GCF_019733875.1 JAASIE01 1765 1846 1846 35 3 42 1 Streptococcus_anginosus_homd_HMT_543 GCA_019733955.1 HMT-622 K19 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii K19 8 2266473 40.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/733/955/GCA_019733955.1_ASM1973395v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA612981 1302 SAMN14389539 ASM1973395v1 Scaffold SPAdes v. 3.2 2020-03-17T08:10:45.946 China feces Illumina HiSeq Heilongjiang bayi agricultural university 100.0x 95.24 99.81 0 99.99 0.23 GCF_019733955.1 JAASHV01 2195 2271 2271 32 3 40 1 Streptococcus_gordonii_homd_HMT_622 GCA_019733995.1 HMT-543 K20 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus K20 11 1950501 38.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/733/995/GCA_019733995.1_ASM1973399v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA612981 1328 SAMN14389540 ASM1973399v1 Scaffold SPAdes v. 3.2 2020-03-17T08:10:45.970 China feces Illumina HiSeq Heilongjiang bayi agricultural university 100.0x 97.28 100 0.07 100 0.13 GCF_019733995.1 JAASHW01 1864 1972 1972 63 3 41 1 Streptococcus_anginosus_homd_HMT_543 GCA_019734215.1 HMT-969 K11 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-969 Bacteroides stercoris K11 59 3906938 46.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/734/215/GCA_019734215.1_ASM1973421v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris PRJNA612981 46506 SAMN14389528 ASM1973421v1 Scaffold SPAdes v. 3.2 2020-03-17T08:10:45.700 China feces Illumina HiSeq Heilongjiang bayi agricultural university 100.0x 98.74 99.26 0.19 99.8 0.2 GCF_019734215.1 JAASHK01 3285 3364 3364 19 3 57 0 Bacteroides_stercoris_homd_HMT_969 GCA_019748455.1 HMT-104 S/N-202-OC-B2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-104 Paracoccus yeei S/N-202-OC-B2 190 4360052 67.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/748/455/GCA_019748455.1_ASM1974845v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus yeei PRJNA644637 147645 SAMN15705246 ASM1974845v1 Contig CLC NGS Cell v. July 2020 2020-08-03T12:30:11.303 USA Air filter Illumina HiSeq Jet Propulsion Laboratory, California Institute of Technology 100.0x 98.35 99.52 0.71 99.99 0.05 GCF_019748455.1 JACLBQ01 4188 4273 4273 27 3 54 1 Paracoccus_yeei_homd_HMT_104 GCA_019748915.1 HMT-048 I2-R2 Named NVP Uncultivated Environmental -Soil/Water (Abundance: Scarce) HMT-048 Paenibacillus typhae I2-R2 83 6926553 51.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/748/915/GCA_019748915.1_ASM1974891v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus typhae PRJNA644637 1174501 SAMN15705224 ASM1974891v1 Contig CLC NGS Cell v. July 2020 2020-08-03T12:30:10.933 USA Air filter Illumina HiSeq Jet Propulsion Laboratory, California Institute of Technology 100.0x 96.07 99.8 2.16 100 0 GCF_019748915.1 JACLCC01 6024 6184 6184 72 5 82 1 Paenibacillus_typhae_homd_HMT_048 GCA_019797825.1 HMT-882 MT-01 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-882 Limosilactobacillus panis MT-01 3 2129075 46.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/797/825/GCA_019797825.1_ASM1979782v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus panis_A PRJNA748141 47493 SAMN20308692 ASM1979782v1 Complete Genome FALCON v. v0.3.0 2021-07-19T23:38:05.993 China: Guizhou Province Maotai Daqu PacBio Kweichow moutai Co.,Ltd. 10.5x 94.84 99.46 1.74 99.5 1.34 GCF_019797825.1 1996 2174 2174 100 15 62 1 Limosilactobacillus_panis_homd_HMT_882 GCA_019815145.1 HMT-476 MA3-1 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava MA3-1 46 2361490 49.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/815/145/GCA_019815145.1_ASM1981514v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA756409 28449 SAMN20865412 ASM1981514v1 Contig SPAdes v. 3.11 2021-08-20T03:05:06.257 South Korea: Jeju Illumina NovaSeq Jeju National University 908.0x 94.11 99.77 0.45 100 0.84 GCF_019815145.1 JAIMJJ01 2260 2339 2339 21 3 54 1 Neisseria_subflava_homd_HMT_476 GCA_019815155.1 HMT-609 MA1-1 Named Cultivated Oral (Abundance: Medium) HMT-609 Neisseria flava MA1-1 77 2485932 51.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/815/155/GCA_019815155.1_ASM1981515v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flava PRJNA756409 34026 SAMN20865411 ASM1981515v1 Contig SPAdes v. 3.11 2021-08-20T03:05:06.237 South Korea: Jeju Illumina NovaSeq Jeju National University 707.0x 99.62 0.11 100 0.06 JAIMJK01 2226 2303 2303 18 3 55 1 Neisseria_flava_homd_HMT_609 GCA_019856215.1 HMT-686 OMZ175 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans OMZ175 1 2060302 37.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/856/215/GCA_019856215.1_ASM1985621v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA752369 857099 SAMN20593762 ASM1985621v1 Chromosome Flye v. 2.8 2021-08-05T14:12:08.697 Not applicable Dental plaque PacBio; Sequel 2 University of Florida 1.0x 99.05 100 0.26 100 0.09 1933 2042 2042 27 15 66 1 Streptococcus_mutans_homd_HMT_686 GCA_019879085.1 HMT-834 CSMC7.1 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-834 Pseudomonas otitidis CSMC7.1 1 6202375 67.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/879/085/GCA_019879085.1_ASM1987908v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas;s__Metapseudomonas otitidis PRJNA757914 319939 SAMN20982461 ASM1987908v1 Complete Genome Unicycler v. v0.4.8-beta 2021-08-26T04:47:07.153 Hong Kong: New Territories polystyrene waste Illumina MiSeq; Oxford Nanopore MinION The Independent Schools Foundation Academy 80.0x 98.29 100 0.79 100 0.05 GCF_019879085.1 5552 5725 5725 83 12 77 1 Pseudomonas_otitidis_homd_HMT_834 GCA_019880465.1 HMT-565 HAEC1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-565 Enterobacter cancerogenus HAEC1 3 5194378 55.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/880/465/GCA_019880465.1_ASM1988046v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter cancerogenus PRJNA640255 69218 SAMN16176831 ASM1988046v1 Complete Genome other/ v. canu v. MAY-2019 2020-09-15T22:35:04.340 China:Nanjing dead larvae Oxford Nanopore Nanjing Agricultural University 645.2x 98.92 100 1.29 100 0.93 GCF_019880465.1 4768 5019 5019 133 25 92 1 Enterobacter_cancerogenus_homd_HMT_565 GCA_019915445.1 HMT-536 SCAID WND1-2021 (9/195) Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-536 Pseudomonas aeruginosa SCAID WND1-2021 (9/195) 1 7093992 65.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/915/445/GCA_019915445.1_ASM1991544v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa PRJNA754843 287 SAMN20982451 ASM1991544v1 Complete Genome Canu v. 2.0 2021-08-26T04:44:06.796 Kazakhstan: Almaty Swab from Wound PacBio Sequel Scientific Center for Anti-infectious Drugs (SCAID) 210.0x 99.43 99.68 0.51 100 0.23 GCF_019915445.1 6638 6879 6879 155 12 73 1 Pseudomonas_aeruginosa_homd_HMT_536 GCA_019928725.1 HMT-758 SY17 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SY17 38 2338339 43.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/928/725/GCA_019928725.1_ASM1992872v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_J PRJNA749742 1305 SAMN20399969 ASM1992872v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.823 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 76.0x 95.13 100 0.92 99.99 0.44 GCF_019928725.1 JAHZOJ01 2223 2303 2303 31 4 44 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019928745.1 HMT-758 STn373 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis STn373 26 2410210 43.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/928/745/GCA_019928745.1_ASM1992874v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_L PRJNA749742 1305 SAMN20399964 ASM1992874v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.750 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 406.0x 94.86 100 0 99.99 0.08 GCF_019928745.1 JAHZOM01 2300 2403 2403 30 10 62 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019928825.1 HMT-758 ST249 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis ST249 11 2394974 43.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/928/825/GCA_019928825.1_ASM1992882v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_L PRJNA749742 1305 SAMN20399961 ASM1992882v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.677 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 111.0x 94.84 100 0 99.99 0.09 GCF_019928825.1 JAHZOP01 2297 2374 2374 30 4 42 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019928845.1 HMT-758 ST499 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis ST499 15 2361878 43.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/928/845/GCA_019928845.1_ASM1992884v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_K PRJNA749742 1305 SAMN20399962 ASM1992884v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.723 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 73.0x 95.57 100 0 99.98 0.03 GCF_019928845.1 JAHZOO01 2267 2348 2348 29 3 48 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019928885.1 HMT-758 ST02 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis ST02 19 2404606 43.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/928/885/GCA_019928885.1_ASM1992888v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_L PRJNA749742 1305 SAMN20399960 ASM1992888v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.663 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 408.0x 94.86 100 0 99.99 0.08 GCF_019928885.1 JAHZOQ01 2299 2403 2403 30 11 62 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019928915.1 HMT-758 SK37 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK37 15 2373204 43.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/928/915/GCA_019928915.1_ASM1992891v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_H PRJNA749742 1305 SAMN20399958 ASM1992891v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.637 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 73.0x 95.21 100 0 99.97 0.1 GCF_019928915.1 JAHZOR01 2266 2344 2344 28 3 46 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019928935.1 HMT-758 SK164 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK164 12 2345415 43.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/928/935/GCA_019928935.1_ASM1992893v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_W PRJNA749742 1305 SAMN20399957 ASM1992893v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.627 missing dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 38.0x 95.3 100 0.19 99.96 0.07 GCF_019928935.1 JAHZOS01 2225 2327 2327 47 7 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019929005.1 HMT-758 SK162 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SK162 14 2346902 43.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/005/GCA_019929005.1_ASM1992900v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_M PRJNA749742 1305 SAMN20399956 ASM1992900v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.613 missing dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 126.0x 95.42 100 0 99.98 0.14 GCF_019929005.1 JAHZOT01 2246 2321 2321 29 3 42 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019929015.1 HMT-758 MA4_6 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis MA4_6 13 2394702 43.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/015/GCA_019929015.1_ASM1992901v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_K PRJNA749742 1305 SAMN20399955 ASM1992901v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.600 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 121.0x 95.34 100 0 100 0.08 GCF_019929015.1 JAHZOU01 2282 2409 2409 64 6 56 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019929085.1 HMT-758 MA17 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis MA17 24 2401827 43.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/085/GCA_019929085.1_ASM1992908v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_K PRJNA749742 1305 SAMN20399954 ASM1992908v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.587 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 245.0x 95.32 100 0.51 100 0.12 GCF_019929085.1 JAHZOV01 2285 2413 2413 64 7 56 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019929095.1 HMT-758 KO19 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis KO19 31 2431618 43.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/095/GCA_019929095.1_ASM1992909v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_J PRJNA749742 1305 SAMN20399950 ASM1992909v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.537 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 333.0x 94.97 100 0 99.99 0.06 GCF_019929095.1 JAHZOZ01 2342 2443 2443 35 10 55 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019929105.1 HMT-758 KO71 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis KO71 14 2348989 43.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/105/GCA_019929105.1_ASM1992910v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_J PRJNA749742 1305 SAMN20399952 ASM1992910v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.563 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 61.0x 95.07 100 0.12 99.99 0.21 GCF_019929105.1 JAHZOX01 2246 2323 2323 33 3 40 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019929145.1 HMT-758 KO9 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis KO9 31 2312052 43.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/145/GCA_019929145.1_ASM1992914v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_U PRJNA749742 1305 SAMN20399953 ASM1992914v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.573 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 67.0x 95.21 100 0 99.98 0.09 GCF_019929145.1 JAHZOW01 2201 2302 2302 51 5 44 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019929185.1 HMT-411 SK148 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis SK148 35 2075709 42.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/185/GCA_019929185.1_ASM1992918v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_O PRJNA749742 1318 SAMN20399945 ASM1992918v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.467 missing dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 111.0x 93.84 100 0.07 99.99 0 GCF_019929185.1 JAHZPC01 1925 2012 2012 36 4 46 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_019929205.1 HMT-758 10556 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis 10556 11 2280325 43.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/205/GCA_019929205.1_ASM1992920v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA749742 1305 SAMN20399946 ASM1992920v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.480 missing bacterial endocarditis Illumina Institute for Genome Sciences, University of Maryland, Baltimore 85.0x 99.96 100 0 99.96 0.05 GCF_019929205.1 JAHZPB01 2175 2250 2250 28 3 43 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019929225.1 HMT-758 KO16 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis KO16 26 2424644 43.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/225/GCA_019929225.1_ASM1992922v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_J PRJNA749742 1305 SAMN20399949 ASM1992922v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.517 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 208.0x 94.97 100 0 99.99 0.06 GCF_019929225.1 JAHZPA01 2323 2423 2423 35 9 55 1 Streptococcus_sanguinis_homd_HMT_758 GCA_019929235.1 HMT-411 K103 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis K103 35 2235029 41.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/235/GCA_019929235.1_ASM1992923v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_AB PRJNA749742 1318 SAMN20399944 ASM1992923v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.453 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 118.0x 94.1 100 0.23 100 0.01 GCF_019929235.1 JAHZPD01 2114 2205 2205 40 3 47 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_019929265.1 HMT-707 SK141 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SK141 15 1870517 41.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/265/GCA_019929265.1_ASM1992926v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_G PRJNA749742 1303 SAMN20399943 ASM1992926v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.440 missing dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 55.0x 94.58 99.87 0.6 99.91 0.1 GCF_019929265.1 JAHZPE01 1809 1917 1917 55 6 46 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_019929265.1 HMT-707 SK141 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis SK141 15 1870517 41.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/265/GCA_019929265.1_ASM1992926v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_G PRJNA749742 1303 SAMN20399943 ASM1992926v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.440 missing dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 55.0x 94.58 99.87 0.6 99.91 0.1 GCF_019929265.1 JAHZPE01 1809 1917 1917 55 6 46 1 Streptococcus_oralis_HMT_071_398_707 GCA_019929285.1 HMT-398 KK38 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani KK38 14 1958801 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/285/GCA_019929285.1_ASM1992928v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BH PRJNA749742 1303 SAMN20399941 ASM1992928v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.413 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 85.0x 93.75 99.87 0.24 99.99 0.06 GCF_019929285.1 JAHZPG01 1922 2005 2005 37 3 42 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_019929285.1 HMT-398 KK38 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani KK38 14 1958801 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/285/GCA_019929285.1_ASM1992928v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BH PRJNA749742 1303 SAMN20399941 ASM1992928v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.413 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 85.0x 93.75 99.87 0.24 99.99 0.06 GCF_019929285.1 JAHZPG01 1922 2005 2005 37 3 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_019929305.1 HMT-398 KK42 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani KK42 12 1961621 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/305/GCA_019929305.1_ASM1992930v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BH PRJNA749742 1303 SAMN20399942 ASM1992930v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.427 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 72.0x 93.75 99.87 0.24 99.99 0.06 GCF_019929305.1 JAHZPF01 1925 2010 2010 38 3 43 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_019929305.1 HMT-398 KK42 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani KK42 12 1961621 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/305/GCA_019929305.1_ASM1992930v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BH PRJNA749742 1303 SAMN20399942 ASM1992930v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.427 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 72.0x 93.75 99.87 0.24 99.99 0.06 GCF_019929305.1 JAHZPF01 1925 2010 2010 38 3 43 1 Streptococcus_oralis_HMT_071_398_707 GCA_019929325.1 HMT-071 J22 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus J22 15 1944845 41.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/325/GCA_019929325.1_ASM1992932v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA749742 1303 SAMN20399939 ASM1992932v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.387 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 55.0x 93.21 99.87 0.4 100 0.03 GCF_019929325.1 JAHZPI01 1857 1951 1951 49 3 41 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_019929325.1 HMT-071 J22 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus J22 15 1944845 41.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/325/GCA_019929325.1_ASM1992932v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA749742 1303 SAMN20399939 ASM1992932v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.387 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 55.0x 93.21 99.87 0.4 100 0.03 GCF_019929325.1 JAHZPI01 1857 1951 1951 49 3 41 1 Streptococcus_oralis_HMT_071_398_707 GCA_019929365.1 HMT-398 KK26 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani KK26 25 1897448 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/365/GCA_019929365.1_ASM1992936v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BT PRJNA749742 1303 SAMN20399940 ASM1992936v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.403 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 124.0x 93.61 99.27 0.2 99.94 0.06 GCF_019929365.1 JAHZPH01 1798 1911 1911 69 5 38 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_019929365.1 HMT-398 KK26 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani KK26 25 1897448 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/365/GCA_019929365.1_ASM1992936v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BT PRJNA749742 1303 SAMN20399940 ASM1992936v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.403 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 124.0x 93.61 99.27 0.2 99.94 0.06 GCF_019929365.1 JAHZPH01 1798 1911 1911 69 5 38 1 Streptococcus_oralis_HMT_071_398_707 GCA_019929405.1 HMT-707 34 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 34 9 1903756 41.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/405/GCA_019929405.1_ASM1992940v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CR PRJNA749742 1303 SAMN20399936 ASM1992940v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.350 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 72.0x 95.1 99.82 0.2 99.99 0.02 GCF_019929405.1 JAHZPL01 1779 1863 1863 37 4 42 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_019929405.1 HMT-707 34 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 34 9 1903756 41.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/405/GCA_019929405.1_ASM1992940v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CR PRJNA749742 1303 SAMN20399936 ASM1992940v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.350 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 72.0x 95.1 99.82 0.2 99.99 0.02 GCF_019929405.1 JAHZPL01 1779 1863 1863 37 4 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_019929425.1 HMT-707 102 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 102 13 1903378 41.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/425/GCA_019929425.1_ASM1992942v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CR PRJNA749742 1303 SAMN20399934 ASM1992942v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.323 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 192.0x 95.1 99.82 0.2 99.99 0.02 GCF_019929425.1 JAHZPN01 1776 1860 1860 37 4 42 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_019929425.1 HMT-707 102 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 102 13 1903378 41.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/425/GCA_019929425.1_ASM1992942v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CR PRJNA749742 1303 SAMN20399934 ASM1992942v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.323 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 192.0x 95.1 99.82 0.2 99.99 0.02 GCF_019929425.1 JAHZPN01 1776 1860 1860 37 4 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_019929465.1 HMT-707 10557 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 10557 18 1961798 41.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/465/GCA_019929465.1_ASM1992946v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA749742 1303 SAMN20399935 ASM1992946v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.337 missing bacterial endocarditis Illumina Institute for Genome Sciences, University of Maryland, Baltimore 172.0x 96.05 99.47 0.2 100 0.01 GCF_019929465.1 JAHZPM01 1843 1926 1926 37 5 40 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_019929465.1 HMT-707 10557 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 10557 18 1961798 41.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/465/GCA_019929465.1_ASM1992946v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJNA749742 1303 SAMN20399935 ASM1992946v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.337 missing bacterial endocarditis Illumina Institute for Genome Sciences, University of Maryland, Baltimore 172.0x 96.05 99.47 0.2 100 0.01 GCF_019929465.1 JAHZPM01 1843 1926 1926 37 5 40 1 Streptococcus_oralis_HMT_071_398_707 GCA_019929505.1 HMT-677 SK142 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SK142 17 1849168 40.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/505/GCA_019929505.1_ASM1992950v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA749742 28037 SAMN20399930 ASM1992950v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.270 missing oral cavity Illumina Institute for Genome Sciences, University of Maryland, Baltimore 154.0x 99.99 99.42 0.2 99.99 0.01 GCF_019929505.1 JAHZPR01 1718 1812 1812 48 5 40 1 Streptococcus_mitis_homd_HMT_677 GCA_019929565.1 HMT-431 SY96 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 SY96 139 1997894 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/565/GCA_019929565.1_ASM1992956v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_L PRJNA749742 68892 SAMN20399926 ASM1992956v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.220 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 48.0x 88.9 99.96 1.8 100 0.71 GCF_019929565.1 JAHZPV01 1889 1979 0 44 5 40 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_019929565.1 HMT-431 SY96 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 SY96 139 1997894 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/565/GCA_019929565.1_ASM1992956v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_L PRJNA749742 68892 SAMN20399926 ASM1992956v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.220 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 48.0x 88.9 99.96 1.8 100 0.71 GCF_019929565.1 JAHZPV01 1889 1979 0 44 5 40 1 Streptococcus_infantis_clade_431_homd_HMT_431 GCA_019929575.1 HMT-431 SY98 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 SY98 99 1969673 39.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/575/GCA_019929575.1_ASM1992957v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_L PRJNA749742 68892 SAMN20399927 ASM1992957v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.233 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 49.0x 88.9 99.96 0.46 100 0.02 GCF_019929575.1 JAHZPU01 1883 1971 0 43 4 40 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_019929575.1 HMT-431 SY98 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 SY98 99 1969673 39.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/575/GCA_019929575.1_ASM1992957v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_L PRJNA749742 68892 SAMN20399927 ASM1992957v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.233 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 49.0x 88.9 99.96 0.46 100 0.02 GCF_019929575.1 JAHZPU01 1883 1971 0 43 4 40 1 Streptococcus_infantis_clade_431_homd_HMT_431 GCA_019929605.1 HMT-431 SY115 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 SY115 71 1914292 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/605/GCA_019929605.1_ASM1992960v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_L PRJNA749742 68892 SAMN20399925 ASM1992960v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.210 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 67.0x 88.9 99.96 0 100 0.02 GCF_019929605.1 JAHZPW01 1818 1902 0 36 6 41 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_019929605.1 HMT-431 SY115 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 SY115 71 1914292 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/605/GCA_019929605.1_ASM1992960v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_L PRJNA749742 68892 SAMN20399925 ASM1992960v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.210 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 67.0x 88.9 99.96 0 100 0.02 GCF_019929605.1 JAHZPW01 1818 1902 0 36 6 41 1 Streptococcus_infantis_clade_431_homd_HMT_431 GCA_019929625.1 HMT-638 STn450 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 STn450 23 1831482 39.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/625/GCA_019929625.1_ASM1992962v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_H PRJNA749742 68892 SAMN20399924 ASM1992962v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.197 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 49.0x 95.1 100 0.11 100 0.03 GCF_019929625.1 JAHZPX01 1730 1810 0 38 3 38 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_019929625.1 HMT-638 STn450 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 STn450 23 1831482 39.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/625/GCA_019929625.1_ASM1992962v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_H PRJNA749742 68892 SAMN20399924 ASM1992962v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.197 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 49.0x 95.1 100 0.11 100 0.03 GCF_019929625.1 JAHZPX01 1730 1810 0 38 3 38 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_019929665.1 HMT-638 STn400 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 STn400 20 1829592 39.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/665/GCA_019929665.1_ASM1992966v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_H PRJNA749742 68892 SAMN20399922 ASM1992966v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.173 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 60.0x 95.1 100 0.11 100 0.03 GCF_019929665.1 JAHZPZ01 1729 1810 0 38 4 38 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_019929665.1 HMT-638 STn400 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 STn400 20 1829592 39.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/665/GCA_019929665.1_ASM1992966v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_H PRJNA749742 68892 SAMN20399922 ASM1992966v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.173 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 60.0x 95.1 100 0.11 100 0.03 GCF_019929665.1 JAHZPZ01 1729 1810 0 38 4 38 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_019929705.1 HMT-622 SK9 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii SK9 17 2147000 40.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/705/GCA_019929705.1_ASM1992970v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399921 ASM1992970v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.160 missing oral cavity Illumina Institute for Genome Sciences, University of Maryland, Baltimore 122.0x 95.9 100 0 99.99 0.04 GCF_019929705.1 JAHZQA01 2053 2126 2126 26 3 43 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929725.1 HMT-622 SK186 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii SK186 8 2205158 40.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/725/GCA_019929725.1_ASM1992972v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399919 ASM1992972v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.137 missing dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 51.0x 95.42 100 0.37 100 0.03 GCF_019929725.1 JAHZQC01 2107 2179 2179 28 3 40 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929745.1 HMT-622 SK33 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii SK33 17 2198505 40.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/745/GCA_019929745.1_ASM1992974v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399920 ASM1992974v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.147 missing oral cavity Illumina Institute for Genome Sciences, University of Maryland, Baltimore 61.0x 95.53 100 0 99.99 0.03 GCF_019929745.1 JAHZQB01 2092 2175 2175 38 4 40 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929765.1 HMT-622 M5 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii M5 26 2154315 40.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/765/GCA_019929765.1_ASM1992976v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399916 ASM1992976v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.100 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 85.0x 95.44 100 0 99.99 0.29 GCF_019929765.1 JAHZQE01 2027 2145 2145 72 3 42 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929785.1 HMT-622 K4 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii K4 22 2255498 40.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/785/GCA_019929785.1_ASM1992978v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399913 ASM1992978v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.063 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 94.0x 96.23 100 0 100 0.1 GCF_019929785.1 JAHZQH01 2171 2245 2245 30 3 40 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929805.1 HMT-622 SK12 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii SK12 13 2146685 40.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/805/GCA_019929805.1_ASM1992980v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399918 ASM1992980v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.127 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 77.0x 95.9 100 0 99.99 0.04 GCF_019929805.1 JAHZQD01 2054 2125 2125 26 3 41 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929835.1 HMT-622 KK1 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii KK1 56 2266218 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/835/GCA_019929835.1_ASM1992983v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399915 ASM1992983v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.087 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 520.0x 95.3 100 1.44 100 1.13 GCF_019929835.1 JAHZQF01 2146 2232 2232 27 5 53 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929865.1 HMT-622 DL1 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii DL1 17 2174351 40.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/865/GCA_019929865.1_ASM1992986v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399912 ASM1992986v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:06.050 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 85.0x 95.47 100 0 100 0.13 GCF_019929865.1 JAHZQI01 2051 2120 2120 26 3 39 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929885.1 HMT-622 CR53 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii CR53 16 2236480 40.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/885/GCA_019929885.1_ASM1992988v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399911 ASM1992988v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.037 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 45.0x 95.31 100 0 100 0.19 GCF_019929885.1 JAHZQJ01 2125 2198 2198 27 3 42 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929905.1 HMT-622 CR01 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii CR01 17 2227230 40.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/905/GCA_019929905.1_ASM1992990v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399909 ASM1992990v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:06.010 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 64.0x 95.3 100 0 100 0.17 GCF_019929905.1 JAHZQL01 2124 2197 2197 29 3 40 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929925.1 HMT-622 CR134 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii CR134 18 2231477 40.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/925/GCA_019929925.1_ASM1992992v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399910 ASM1992992v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.023 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 213.0x 95.3 100 0 100 0.17 GCF_019929925.1 JAHZQK01 2115 2202 2202 28 5 53 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929945.1 HMT-622 38 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii 38 9 2164419 40.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/945/GCA_019929945.1_ASM1992994v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399908 ASM1992994v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:05.997 missing dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 161.0x 95.73 100 0.19 99.98 0.15 GCF_019929945.1 JAHZQM01 2050 2123 2123 27 3 42 1 Streptococcus_gordonii_homd_HMT_622 GCA_019929965.1 HMT-578 CR163 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus CR163 28 2053353 42.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/965/GCA_019929965.1_ASM1992996v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_D PRJNA749742 45634 SAMN20399906 ASM1992996v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:05.960 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 46.0x 94.68 100 0 99.97 0.27 GCF_019929965.1 JAHZQO01 1987 2097 2097 65 3 41 1 Streptococcus_cristatus_homd_HMT_578 GCA_019929985.1 HMT-622 10558 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii 10558 13 2165874 40.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/929/985/GCA_019929985.1_ASM1992998v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399907 ASM1992998v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:05.980 missing bacterial endocarditis Illumina Institute for Genome Sciences, University of Maryland, Baltimore 70.0x 99.99 100 0 100 0.15 GCF_019929985.1 JAHZQN01 2056 2146 2146 46 3 40 1 Streptococcus_gordonii_homd_HMT_622 GCA_019930005.1 HMT-073 KO70 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis KO70 181 1985150 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/930/005/GCA_019930005.1_ASM1993000v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus australis_D PRJNA749742 113107 SAMN20399905 ASM1993000v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:05.947 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 38.0x 93.94 100 0.34 99.98 0.42 GCF_019930005.1 JAHZQP01 1855 1937 1937 32 3 46 1 Streptococcus_australis_homd_HMT_073 GCA_019930045.1 HMT-073 KO69 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis KO69 138 2183701 41.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/930/045/GCA_019930045.1_ASM1993004v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus australis_D PRJNA749742 113107 SAMN20399904 ASM1993004v1 Contig SPAdes v. 3.11.1 2021-07-26T13:03:05.933 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 40.0x 93.8 100 0.34 99.96 0.03 GCF_019930045.1 JAHZQQ01 2084 2185 2185 54 3 43 1 Streptococcus_australis_homd_HMT_073 GCA_019930105.1 HMT-543 SK52 = DSM 20563 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus SK52 = DSM 20563 17 1901435 38.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/930/105/GCA_019930105.1_ASM1993010v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA749742 1328 SAMN20399902 ASM1993010v1 Contig SPAdes v. 3.14.1 2021-07-26T13:03:05.903 missing missing Illumina Institute for Genome Sciences, University of Maryland, Baltimore 96.0x 99.99 100 0 99.97 0.03 GCF_019930105.1 JAHZQS01 1825 1931 1931 56 3 46 1 Streptococcus_anginosus_homd_HMT_543 GCA_019930605.1 HMT-693 FDAARGOS_1486 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens FDAARGOS_1486 2 2673077 42.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/930/605/GCA_019930605.1_ASM1993060v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA231221 28133 SAMN20888903 ASM1993060v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-08-20T16:18:24.050 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2253.6x 99.99 99.31 0 99.95 0.13 GCF_019930605.1 2270 2338 2338 7 12 48 1 Prevotella_nigrescens_homd_HMT_693 GCA_019930705.1 HMT-641 FDAARGOS_1479 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae FDAARGOS_1479 1 1902597 38.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/930/705/GCA_019930705.1_ASM1993070v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA231221 727 SAMN20888896 ASM1993070v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-08-20T16:18:23.943 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3211.9x 97.32 99.67 0 100 0.96 GCF_019930705.1 1802 1916 1916 36 20 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_019930725.1 HMT-700 FDAARGOS_1468 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea FDAARGOS_1468 1 2615469 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/930/725/GCA_019930725.1_ASM1993072v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA231221 1018 SAMN20888885 ASM1993072v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-08-20T16:18:23.770 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1984.6x 99.99 100 0 99.99 0.02 GCF_019930725.1 2183 2252 2252 9 12 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_019930845.1 HMT-577 FDAARGOS_1474 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens FDAARGOS_1474 1 2192571 55.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/930/845/GCA_019930845.1_ASM1993084v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJNA231221 539 SAMN20888891 ASM1993084v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-08-20T16:18:23.867 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2477.3x 99.99 96.26 0.56 99.99 0.16 GCF_019930845.1 2087 2163 2163 10 12 53 1 Eikenella_corrodens_homd_HMT_577 GCA_019930905.1 HMT-535 FDAARGOS_1478 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius FDAARGOS_1478 1 1993271 38.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/930/905/GCA_019930905.1_ASM1993090v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA231221 197575 SAMN20888895 ASM1993090v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-08-20T16:18:23.927 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3698.5x 99.99 99.56 0 99.99 0.06 GCF_019930905.1 1971 2090 2090 43 19 56 1 Haemophilus_aegyptius_homd_HMT_535 GCA_019931005.1 HMT-534 FDAARGOS_1477 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens FDAARGOS_1477 1 1965420 37.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/931/005/GCA_019931005.1_ASM1993100v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJNA231221 46124 SAMN20888894 ASM1993100v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-08-20T16:18:23.913 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3190.0x 99.99 99.45 0.18 99.35 0.05 GCF_019931005.1 1870 1973 1973 29 15 58 1 Granulicatella_adiacens_homd_HMT_534 GCA_019969405.1 HMT-961 Fp1160 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-961 Faecalibacterium prausnitzii Fp1160 3 3129292 56.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/969/405/GCA_019969405.1_ASM1996940v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii PRJNA679348 853 SAMN16824740 ASM1996940v1 Contig HGAP v. SMART Analysis 2.3.0 2020-11-18T01:16:11.500 Japan: Shiga PacBio RSII Tokyo Institute of Technology 322.8x 96.54 100 0.34 98.66 0.84 GCF_019969405.1 JAEKBY01 2912 3045 3045 41 21 70 1 Faecalibacterium_prausnitzii_homd_HMT_961 GCA_019969415.1 HMT-961 Fp1043 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-961 Faecalibacterium prausnitzii Fp1043 2 3113977 56.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/969/415/GCA_019969415.1_ASM1996941v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii PRJNA679348 853 SAMN16824739 ASM1996941v1 Contig HGAP v. SMART Analysis 2.3.0 2020-11-18T01:16:11.480 Japan: Shiga PacBio RSII Tokyo Institute of Technology 501.4x 96.55 100 0 98.53 0.53 GCF_019969415.1 JAEKBZ01 2901 3031 3031 44 18 67 1 Faecalibacterium_prausnitzii_homd_HMT_961 GCA_019969455.1 HMT-961 Fp137 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-961 Faecalibacterium prausnitzii Fp137 2 3262007 56.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/969/455/GCA_019969455.1_ASM1996945v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii PRJNA679348 853 SAMN16824742 ASM1996945v1 Contig HGAP v. SMART Analysis 2.3.0 2020-11-18T01:16:11.537 Japan: Gumma PacBio RSII Tokyo Institute of Technology 345.3x 96.57 100 0 99.49 1.39 GCF_019969455.1 JAEKBW01 3052 3182 3182 43 21 65 1 Faecalibacterium_prausnitzii_homd_HMT_961 GCA_019972875.1 HMT-152 DSM 20617 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-152 Streptococcus thermophilus DSM 20617 84 2017459 38.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/972/875/GCA_019972875.1_ASM1997287v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus PRJDB7793 1308 SAMD00393675 ASM1997287v1 Contig A5-MiSeq v. 20160825; SPAdes v. 3.12.0 2021-07-18T02:45:54.053 missing Illumina NovaSeq Northeast Agricultural University 527.0x 99.98 99.89 0.4 99.97 0.25 GCF_019972875.1 BPPS01 2143 2255 2255 69 3 39 1 Streptococcus_thermophilus_homd_HMT_152 GCA_019972895.1 HMT-755 JCM 5707 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius JCM 5707 34 2166453 40.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/972/895/GCA_019972895.1_ASM1997289v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJDB7793 1304 SAMD00393676 ASM1997289v1 Contig A5-MiSeq v. 20160825; SPAdes v. 3.12.0 2021-07-18T02:45:54.073 missing Illumina NovaSeq Northeast Agricultural University 448.0x 99.98 99.46 0.15 99.99 0 GCF_019972895.1 BPPT01 1984 2067 2067 32 3 47 1 Streptococcus_salivarius_homd_HMT_755 GCA_019973315.1 HMT-794 JCM 12954 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-794 Hallella multisaccharivorax JCM 12954 34 3406041 48.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/973/315/GCA_019973315.1_ASM1997331v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella multisaccharivorax PRJDB12066 688246 SAMD00394450 ASM1997331v1 Scaffold SPAdes v. 3.13.2 2021-08-02T12:06:09.873 not applicable Illumina MiSeq; OXFORD_NANOPORE MinION Advanced Analysis Center, National Agriculture and Food Research Organization 625.0x 99.98 98.65 0.56 99.93 0.9 GCF_019973315.1 BPTS01 2903 3020 3020 50 12 55 0 Hallella_multisaccharivorax_homd_HMT_794 GCA_019973675.1 HMT-851 2019-19 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus 2019-19 1 1895310 38.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/973/675/GCA_019973675.1_ASM1997367v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJDB10631 726 SAMD00251501 ASM1997367v1 Complete Genome Unicycler v. 0.4.7 2021-09-01T01:00:58.806 not collected GridION; DNB Seq-G400 Tokyo University of Pharmacy and Life Sciences 1158.0x 95.7 99.66 0 100 0.04 GCF_019973675.1 1763 1871 1871 30 19 58 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_019973735.1 HMT-194 SK-1 Named Cultivated Oral (Abundance: High) HMT-194 Arachnia rubra SK-1 1 3316972 64.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/973/735/GCA_019973735.1_ASM1997373v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia rubra PRJDB11022 1547448 SAMD00270488 ASM1997373v1 Complete Genome Flye v. 2.4.2-gcbbe5c5 2021-09-08T14:06:19.550 Japan:Chiba, Matsudo, Sakaecho Sequel II Nihon University School of Dentistry at Matsudo 808.0x 99.99 96.42 1.22 100 1.1 GCF_019973735.1 3000 3076 3076 19 6 49 2 Arachnia_rubra_homd_HMT_194 GCA_020023775.1 HMT-818 SD-LRE2-IT Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-818 Limosilactobacillus reuteri SD-LRE2-IT 1 2313802 38.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/023/775/GCA_020023775.1_ASM2002377v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus reuteri PRJNA740036 1598 SAMN19814906 ASM2002377v1 Complete Genome Flye assembly v. 2.8.1-b1676 2021-06-22T17:06:06.160 Italy Oxford Nanopore; Illumina SEED HEALTH INC 156.0x 99.03 99.13 0 99.99 0.78 GCF_020023775.1 2424 2601 2601 84 18 74 1 Limosilactobacillus_reuteri_homd_HMT_818 GCA_020042125.1 HMT-817 Lc1226 Named Cultivated Vaginal (Abundance: High) HMT-817 Lactobacillus crispatus Lc1226 1 2526154 37.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/042/125/GCA_020042125.1_ASM2004212v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus crispatus PRJNA761982 47770 SAMN21367958 ASM2004212v1 Complete Genome Unicycler v. v.0.4.8 2021-09-09T11:44:06.027 USA: Dallas, Texas urine Illumina NextSeq, ONT MinION University of Texas at Dallas 97.6 99.03 0.09 99.98 0.64 GCF_020042125.1 2590 2725 2725 49 15 70 1 Lactobacillus_crispatus_homd_HMT_817 GCA_020091305.1 HMT-970 BFG-55 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-970 Bacteroides thetaiotaomicron BFG-55 1 6337561 42.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/091/305/GCA_020091305.1_ASM2009130v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron PRJNA646575 818 SAMN15547032 ASM2009130v1 Complete Genome Canu v. v. 1.6 2020-07-15T22:36:09.180 USA:Bethesda Peritoneal Fluid PacBio Sequel National Institute of Allergy and Infectious Disease 269.0x 99.13 99.46 0.08 99.91 0.3 GCF_020091305.1 4907 5021 5021 28 15 70 1 Bacteroides_thetaiotaomicron_homd_HMT_970 GCA_020091365.1 HMT-974 BFG-280 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-974 Parabacteroides merdae BFG-280 1 4559639 45.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/091/365/GCA_020091365.1_ASM2009136v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae PRJNA646575 46503 SAMN15546958 ASM2009136v1 Complete Genome HGAP/FALCON v. v. 6.0 2020-07-15T22:36:07.990 USA:Bethesda blood PacBio Sequel National Institute of Allergy and Infectious Disease 375.0x 98.92 99.62 0.13 99.8 0.26 GCF_020091365.1 3784 3905 3905 17 21 81 2 Parabacteroides_merdae_homd_HMT_974 GCA_020091485.1 HMT-969 BFG-121 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-969 Bacteroides stercoris BFG-121 1 3883826 45.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/091/485/GCA_020091485.1_ASM2009148v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris PRJNA646575 46506 SAMN15547175 ASM2009148v1 Complete Genome Canu v. v. 1.6 2020-07-15T22:36:12.147 USA:Bethesda missing PacBio Sequel National Institute of Allergy and Infectious Disease 457.0x 98.77 99.26 0.62 99.76 0.27 GCF_020091485.1 3258 3356 3356 16 15 67 0 Bacteroides_stercoris_homd_HMT_969 GCA_020091545.1 HMT-967 BFG-100 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-967 Bacteroides caccae BFG-100 1 5022820 42.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/091/545/GCA_020091545.1_ASM2009154v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae PRJNA646575 47678 SAMN15547129 ASM2009154v1 Complete Genome HGAP/FALCON v. v. 6.0 2020-07-15T22:36:10.897 USA:Bethesda missing PacBio Sequel National Institute of Allergy and Infectious Disease 443.0x 99.45 99.11 0.7 99.92 1.78 GCF_020091545.1 4170 4284 4284 18 15 80 1 Bacteroides_caccae_homd_HMT_967 GCA_020097335.1 HMT-734 FDAARGOS_1508 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae FDAARGOS_1508 1 2116633 39.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/097/335/GCA_020097335.1_ASM2009733v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA231221 1313 SAMN21218864 ASM2009733v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-09-03T20:03:06.923 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2437.7x 98.66 99.6 0.21 100 0.33 GCF_020097335.1 2093 2248 2248 84 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_020097375.1 HMT-273 FDAARGOS_1506 Named Cultivated Oral (Abundance: High) HMT-273 Porphyromonas endodontalis FDAARGOS_1506 1 2102930 47.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/097/375/GCA_020097375.1_ASM2009737v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas endodontalis PRJNA231221 28124 SAMN21218862 ASM2009737v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-09-03T20:03:06.896 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2969.8x 99.99 99.61 0 99.28 0.16 GCF_020097375.1 1745 1814 1814 9 9 50 1 Porphyromonas_endodontalis_homd_HMT_273 GCA_020097435.1 HMT-046 FDAARGOS_1501 Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum FDAARGOS_1501 1 1760933 30.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/097/435/GCA_020097435.1_ASM2009743v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJNA231221 29391 SAMN21218857 ASM2009743v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-09-03T20:03:06.823 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3098.4x 99.99 98.56 0 100 0.15 GCF_020097435.1 1656 1735 1735 24 12 42 1 Gemella_morbillorum_homd_HMT_046 GCA_020097455.1 HMT-626 FDAARGOS_1500 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 FDAARGOS_1500 1 1928240 30.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/097/455/GCA_020097455.1_ASM2009745v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans PRJNA231221 1379 SAMN21218856 ASM2009745v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-09-03T20:03:06.807 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2669.1x 99.97 98.08 0.57 99.98 0.53 GCF_020097455.1 1674 1761 0 33 12 41 1 Gemella_haemolysans_HMT_434_626 GCA_020097455.1 HMT-626 FDAARGOS_1500 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 FDAARGOS_1500 1 1928240 30.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/097/455/GCA_020097455.1_ASM2009745v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans PRJNA231221 1379 SAMN21218856 ASM2009745v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-09-03T20:03:06.807 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2669.1x 99.97 98.08 0.57 99.98 0.53 GCF_020097455.1 1674 1761 0 33 12 41 1 Gemella_haemolysans_clade_626_homd_HMT_626 GCA_020097655.1 HMT-341 FDAARGOS_1492 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-341 Corynebacterium coyleae FDAARGOS_1492 1 2582814 61.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/097/655/GCA_020097655.1_ASM2009765v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium coyleae PRJNA231221 53374 SAMN21218848 ASM2009765v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-09-03T20:03:06.680 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2438.8x 97.67 97.94 0.09 99.94 0.41 GCF_020097655.1 2412 2486 2486 8 12 53 1 Corynebacterium_coyleae_homd_HMT_341 GCA_020149745.1 HMT-968 FDAARGOS_1516 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-968 Bacteroides ovatus FDAARGOS_1516 1 6434576 41.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/149/745/GCA_020149745.1_ASM2014974v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus PRJNA231221 28116 SAMN21218872 ASM2014974v1 Chromosome SMRT v. 9.0.0, HGAP v. 4.0 2021-09-03T20:03:07.060 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 977.7x 99.99 99.04 0.12 99.96 0.57 GCF_020149745.1 4890 4997 4997 21 15 70 1 Bacteroides_ovatus_homd_HMT_968 GCA_020161895.1 HMT-047 ICIS 99 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum ICIS 99 41 2532503 58.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/161/895/GCA_020161895.1_ASM2016189v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA339674 43765 SAMN21545782 ASM2016189v1 Contig Unicycler v. 0.4.9 2021-09-22T04:17:05.692 Russia: Orenburg vagina Illumina MiSeq Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences 375.0x 94.87 100 0 100 0.03 GCF_020161895.1 JAIUSU01 2194 2264 2264 13 3 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_020162195.1 HMT-297 CSUSB1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-297 Acinetobacter johnsonii CSUSB1 3 3655004 41.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/162/195/GCA_020162195.1_ASM2016219v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter johnsonii PRJNA765017 40214 SAMN21540781 ASM2016219v1 Complete Genome Unicycler v. 0.4.8.0 2021-09-21T15:14:04.410 USA:California garden soil Illumina MiSeq; Oxford Nanopore MinION California State University San Bernardino 450.0x 95.89 100 0.43 100 1.29 GCF_020162195.1 3484 3611 3611 17 21 88 1 Acinetobacter_johnsonii_homd_HMT_297 GCA_020162275.1 HMT-683 DSM 2579 Named Cultivated Oral (Abundance: High) HMT-683 Simonsiella muelleri DSM 2579 1 2482394 41.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/162/275/GCA_020162275.1_ASM2016227v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Simonsiella;s__Simonsiella muelleri PRJNA687218 72 SAMN17137620 ASM2016227v1 Complete Genome canu v. 2.11 2020-12-22T11:03:07.770 Austria:Vienna missing Oxford Nanopore MinION; Illumina NovaSeq University of Vienna 390.0x 99.98 97.69 0.53 100 0.1 GCF_020162275.1 2390 2480 2480 18 15 56 1 Simonsiella_muelleri_homd_HMT_683 GCA_020181495.1 HMT-530 NBRC 113869 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes NBRC 113869 1 2560907 60.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/181/495/GCA_020181495.1_ASM2018149v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA747117 1734925 SAMN21163589 ASM2018149v1 Complete Genome Flye v. 2.8.3; Racon v. 1.4.20; Medaka v. 1.2.2; Pilon v. 1.23 2021-09-01T00:52:05.090 Japan human skin Illumina MiSeq; Oxford Nanopore MinION National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute 327.0x 99.22 100 0 100 0.17 GCF_020181495.1 2352 2433 2433 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_020297555.1 HMT-662 FDAARGOS_1521 Named Cultivated Nasal (Abundance: Medium) HMT-662 Finegoldia magna FDAARGOS_1521 2 1900068 32.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/297/555/GCA_020297555.1_ASM2029755v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia;s__Finegoldia magna_F PRJNA231221 1260 SAMN21218877 ASM2029755v1 Contig SMRT v. 9.0.0, HGAP v. 4.0 2021-09-03T20:03:07.163 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 4174.1x 94.36 98.78 0 99.85 0.01 GCF_020297555.1 JAIWZG01 1792 1878 1878 25 12 48 1 Finegoldia_magna_homd_HMT_662 GCA_020341455.1 HMT-854 FDAARGOS_1535 Named Cultivated Oral (Abundance: Scarce) HMT-854 Ralstonia pickettii FDAARGOS_1535 5 5008012 63.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/341/455/GCA_020341455.1_ASM2034145v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;s__Ralstonia pickettii PRJNA231221 329 SAMN21402702 ASM2034145v1 Chromosome SMRT v. 9.0.0, HGAP v. 4.0, SPAdes v. 3.14.1 2021-09-13T09:31:06.583 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1255.1x 99.98 99.94 0.01 99.98 0.01 GCF_020341455.1 4653 4750 4750 30 9 57 1 Ralstonia_pickettii_homd_HMT_854 GCA_020353915.1 HMT-862 NBRC 114494 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-862 Bifidobacterium longum NBRC 114494 3 2534372 60.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/353/915/GCA_020353915.1_ASM2035391v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum PRJNA747117 1679 SAMN21163593 ASM2035391v1 Complete Genome Flye v. 2.8.3; Unicycler v. 0.4.7 2021-09-01T00:52:05.226 Japan human feces Illumina MiSeq; Oxford Nanopore GridION National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute 509.0x 98.86 100 0 99.99 0.13 GCF_020353915.1 2126 2207 2207 14 8 58 1 Bifidobacterium_longum_homd_HMT_862 GCA_020386595.1 HMT-550 N6 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus N6 1 2766978 32.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/386/595/GCA_020386595.1_ASM2038659v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA732579 1280 SAMN19550066 ASM2038659v1 Complete Genome HGAP v. 4 2021-06-03T18:25:11.597 Germany: Augsburg PacBio Sequel Helmholtz Center Munich 200.0x 98.95 99.51 0.08 100 0.13 GCF_020386595.1 2528 2729 2729 119 20 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_020388155.1 HMT-550 L4 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus L4 1 2766975 32.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/388/155/GCA_020388155.1_ASM2038815v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA732579 1280 SAMN19550061 ASM2038815v1 Complete Genome HGAP v. 4 2021-06-03T18:25:11.537 Germany: Augsburg PacBio Sequel Helmholtz Center Munich 200.0x 98.94 99.51 0.08 100 0.13 GCF_020388155.1 2529 2729 2729 119 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_020388825.1 HMT-550 327 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 327 1 2764236 32.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/388/825/GCA_020388825.1_ASM2038882v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA732579 1280 SAMN19550040 ASM2038882v1 Complete Genome HGAP v. 4 2021-06-03T18:25:11.283 Germany: Augsburg PacBio Sequel Helmholtz Center Munich 200.0x 97.46 99.51 0.13 100 0.29 GCF_020388825.1 2569 2752 2752 102 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_020388965.1 HMT-550 282 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 282 1 2732780 32.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/388/965/GCA_020388965.1_ASM2038896v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA732579 1280 SAMN19550033 ASM2038896v1 Complete Genome HGAP v. 4 2021-06-03T18:25:11.163 Germany: Augsburg PacBio Sequel Helmholtz Center Munich 200.0x 99.1 99.51 0.08 100 0.2 GCF_020388965.1 2474 2675 2675 119 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_020404185.1 HMT-755 E31 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius E31 26 2151131 39.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/404/185/GCA_020404185.1_ASM2040418v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA767413 1304 SAMN21924259 ASM2040418v1 Contig Unicycler v. 0.4.8 2021-09-30T17:56:05.940 USA: Oregon cheese processing environment Illumina HiSeq 3000 Oregon State University 376.0x 96.43 99.84 0.58 100 0.12 GCF_020404185.1 JAIZBZ01 1939 2018 2018 35 3 40 1 Streptococcus_salivarius_homd_HMT_755 GCA_020404345.1 HMT-755 E32 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius E32 25 2152518 39.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/404/345/GCA_020404345.1_ASM2040434v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA767413 1304 SAMN21924260 ASM2040434v1 Contig Unicycler v. 0.4.8 2021-09-30T17:56:05.956 USA: Oregon cheese processing environment Illumina HiSeq 3000 Oregon State University 324.0x 96.44 99.84 0.58 100 0.12 GCF_020404345.1 JAIZBY01 1937 2016 2016 35 3 40 1 Streptococcus_salivarius_homd_HMT_755 GCA_020550085.1 HMT-971 KGMB10229 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-971 Bacteroides uniformis KGMB10229 1 4248411 46.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/550/085/GCA_020550085.1_ASM2055008v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis PRJDB7416 2792859 SAMN22072259 ASM2055008v1 Complete Genome HGAP v. 2.3 2021-10-06T02:30:06.023 North Korea healthy Korean feces PacBio RSII Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology 369.0x 99.09 99.26 0.12 99.98 0.09 GCF_020550085.1 3546 3656 3656 35 12 63 0 Bacteroides_uniformis_homd_HMT_971 GCA_020554325.1 HMT-622 DFI.4.79 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii DFI.4.79 38 2217339 40.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/554/325/GCA_020554325.1_ASM2055432v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA737800 1302 SAMN22167636 ASM2055432v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:11.260 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 95.44 100 0 100 0.05 GCF_020554325.1 JAJCHD01 2105 2175 2175 27 6 36 1 Streptococcus_gordonii_homd_HMT_622 GCA_020554345.1 HMT-622 DFI.4.104 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii DFI.4.104 52 2236381 40.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/554/345/GCA_020554345.1_ASM2055434v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA737800 1302 SAMN22167633 ASM2055434v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:11.213 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 95.45 100 0 100 0.05 GCF_020554345.1 JAJCHG01 2119 2191 2191 27 7 37 1 Streptococcus_gordonii_homd_HMT_622 GCA_020554365.1 HMT-411 DFI.4.42 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis DFI.4.42 79 2129120 41.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/554/365/GCA_020554365.1_ASM2055436v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_S PRJNA737800 2883234 SAMN22167634 ASM2055436v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:11.230 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 100 0 99.99 0.02 GCF_020554365.1 JAJCHF01 2009 2092 2092 41 3 38 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_020555445.1 HMT-965 DFI.6.89 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-965 Alistipes putredinis DFI.6.89 53 2769186 53.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/555/445/GCA_020555445.1_ASM2055544v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis PRJNA737800 28117 SAMN22167575 ASM2055544v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:10.186 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 98.9 99.52 1.44 99.99 1.16 GCF_020555445.1 JAJCIW01 2511 2586 2586 20 3 51 1 Alistipes_putredinis_homd_HMT_965 GCA_020555745.1 HMT-562 DFI.7.71 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-562 Hoylesella buccalis DFI.7.71 163 3152030 45.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/555/745/GCA_020555745.1_ASM2055574v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccalis PRJNA737800 28127 SAMN22167563 ASM2055574v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:09.920 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 97.81 99.29 0 99.91 0.09 GCF_020555745.1 JAJCJI01 2584 2666 2666 23 6 52 1 Hoylesella_buccalis_homd_HMT_562 GCA_020558055.1 HMT-542 DFI.6.4 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius DFI.6.4 114 2079750 35.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/558/055/GCA_020558055.1_ASM2055805v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA737800 1261 SAMN22167541 ASM2055805v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:09.563 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 99.08 100 0 100 0.07 GCF_020558055.1 JAJCJY01 1824 1901 1901 39 5 32 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_020559585.1 HMT-161 DFI.7.66 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula DFI.7.66 23 2096172 38.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/559/585/GCA_020559585.1_ASM2055958v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJNA737800 29466 SAMN22167487 ASM2055958v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:08.653 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 96.77 100 0 99.99 0.18 GCF_020559585.1 JAJCLN01 1866 1943 1943 21 7 48 1 Veillonella_parvula_homd_HMT_161 GCA_020559605.1 HMT-161 DFI.7.67 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula DFI.7.67 18 2155102 38.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/559/605/GCA_020559605.1_ASM2055960v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_I PRJNA737800 29466 SAMN22167488 ASM2055960v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:08.670 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 96.38 100 0 100 0.64 GCF_020559605.1 JAJCLM01 1894 1972 1972 21 8 48 1 Veillonella_parvula_homd_HMT_161 GCA_020559625.1 HMT-655 DFI.6.107 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-655 Eubacterium limosum DFI.6.107 107 4743605 47.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/559/625/GCA_020559625.1_ASM2055962v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__Eubacterium limosum PRJNA737800 1736 SAMN22167486 ASM2055962v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:08.636 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 98.28 99.3 0 100 2.73 GCF_020559625.1 JAJCLO01 4564 4740 4740 102 9 64 1 Eubacterium_limosum_homd_HMT_655 GCA_020560885.1 HMT-411 DFI.3.149 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis DFI.3.149 252 2204240 41.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/560/885/GCA_020560885.1_ASM2056088v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_S PRJNA737800 1318 SAMN22167429 ASM2056088v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:07.683 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 94.27 100 0.63 99.99 0.28 GCF_020560885.1 JAJCND01 2070 2150 2150 36 3 40 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_020560985.1 HMT-524 DFI.2.98 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica DFI.2.98 239 2212497 39.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/560/985/GCA_020560985.1_ASM2056098v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA737800 39777 SAMN22167423 ASM2056098v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:07.573 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 97.08 100 0 100 0.35 GCF_020560985.1 JAJCNH01 2043 2105 2105 19 3 39 1 Veillonella_atypica_homd_HMT_524 GCA_020561985.1 HMT-622 DFI.1.43 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii DFI.1.43 74 2215581 40.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/561/985/GCA_020561985.1_ASM2056198v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA737800 1302 SAMN22167384 ASM2056198v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:06.903 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 95.6 100 0 100 0.1 GCF_020561985.1 JAJCOL01 2104 2174 2174 29 3 37 1 Streptococcus_gordonii_homd_HMT_622 GCA_020564385.1 HMT-118 SL.1.06 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus SL.1.06 45 1783057 45.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/564/385/GCA_020564385.1_ASM2056438v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA737800 218538 SAMN22167284 ASM2056438v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:05.136 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 97.77 98.1 0.63 99.99 0.22 GCF_020564385.1 JAJCRT01 1668 1763 1763 37 6 51 1 Dialister_invisus_homd_HMT_118 GCA_020590155.1 HMT-021 DFI.4.125 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis DFI.4.125 91 1931486 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/590/155/GCA_020590155.1_ASM2059015v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA737800 1343 SAMN22167609 ASM2059015v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:10.823 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 98.5 99.96 0.15 99.99 0.02 GCF_020590155.1 JAJDKS01 1871 1949 1949 39 2 36 1 Streptococcus_vestibularis_homd_HMT_021 GCA_020593075.1 HMT-021 DFI.4.52 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis DFI.4.52 97 1927681 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/593/075/GCA_020593075.1_ASM2059307v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA737800 1343 SAMN22167514 ASM2059307v1 Contig SPAdes v. v3.14.0 2021-10-08T16:33:09.110 USA:Chicago fecal sample Illumina MiSeq University of Chicago 100.0x 98.51 99.53 0.15 99.99 0.02 GCF_020593075.1 JAJDKY01 1867 1949 1949 40 2 39 1 Streptococcus_vestibularis_homd_HMT_021 GCA_020640935.1 HMT-677 CCUG 70037 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis CCUG 70037 27 1903742 40.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/640/935/GCA_020640935.1_ASM2064093v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA302716 28037 SAMN07645354 ASM2064093v1 Scaffold CLC Genomics Workbench v. 10 2017-09-14T06:58:05.903 Sweden: Vastra Gotaland, Gothe blood Illumina MiSeq TAILORED-Treatment project 322.0x 95.9 99.34 0.2 99.99 0.01 GCF_020640935.1 NWMU01 1797 1895 1895 47 3 47 1 Streptococcus_mitis_homd_HMT_677 GCA_020682785.1 HMT-128 SS167_SL_UNIFESP Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis SS167_SL_UNIFESP 23 2548401 33.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/682/785/GCA_020682785.1_ASM2068278v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA736948 28035 SAMN19669000 ASM2068278v1 Contig SPAdes v. version 3.13.1 2021-06-11T11:21:05.480 Brazil: Sao Paulo orthopedic device (ODRI) sonication fluid Illumina MiSeq Universidade Federal de Sao Paulo (UNIFESP) 199.6x 99.45 99.61 0 100 0.07 GCF_020682785.1 JAHMMV01 2351 2508 2508 84 7 65 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_020682835.1 HMT-116 SS160_SC_UNIFESP Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis SS160_SC_UNIFESP 22 2508421 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/682/835/GCA_020682835.1_ASM2068283v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA736948 29388 SAMN19668998 ASM2068283v1 Contig SPAdes v. version 3.13.1 2021-06-11T11:21:05.453 Brazil: Sao Paulo orthopedic device (ODRI) sonication fluid Illumina MiSeq Universidade Federal de Sao Paulo (UNIFESP) 130.8x 98.82 99.81 0.36 99.99 0.1 GCF_020682835.1 JAHMMT01 2374 2496 2496 50 9 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_020702545.2 HMT-550 0610-H-2A Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 0610-H-2A 3 2842451 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/702/545/GCA_020702545.2_ASM2070254v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA660925 1280 SAMN15964195 ASM2070254v2 Complete Genome SPAdes v. 3.14 2020-09-02T05:29:12.263 China:Hubei nasal cavity Oxford Nanopore Huazhong Agricultural University 500.0x 97.76 99.51 0.11 100 0.18 GCF_020702545.2 2601 2790 2790 108 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_020702615.2 HMT-550 JL28 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus JL28 2 2740664 32.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/702/615/GCA_020702615.2_ASM2070261v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA660925 1280 SAMN15964463 ASM2070261v2 Complete Genome SPAdes v. 3.14 2020-09-02T06:17:06.950 China:Hubei not collected Oxford Nanopore Huazhong Agricultural University 500.0x 97.79 99.51 0.08 100 0.18 GCF_020702615.2 2506 2695 2695 108 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_020729665.1 HMT-758 ST01 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis ST01 18 2408145 43.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/729/665/GCA_020729665.1_ASM2072966v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_L PRJNA749742 1305 SAMN20399959 ASM2072966v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.650 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 344.0x 94.9 100 0 99.99 0.08 GCF_020729665.1 JAJEPC01 2302 2404 2404 30 10 61 1 Streptococcus_sanguinis_homd_HMT_758 GCA_020729675.1 HMT-758 BR3 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis BR3 20 2355110 43.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/729/675/GCA_020729675.1_ASM2072967v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_X PRJNA749742 1305 SAMN20399947 ASM2072967v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.493 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 582.0x 95.38 100 0.37 99.98 0.06 GCF_020729675.1 JAJEOZ01 2253 2343 2343 29 5 55 1 Streptococcus_sanguinis_homd_HMT_758 GCA_020729705.1 HMT-622 MA6 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii MA6 26 2264331 40.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/729/705/GCA_020729705.1_ASM2072970v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA749742 1302 SAMN20399917 ASM2072970v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.113 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 186.0x 95.4 100 0 100 0.03 GCF_020729705.1 JAJEPB01 2139 2228 2228 29 5 54 1 Streptococcus_gordonii_homd_HMT_622 GCA_020729715.1 HMT-758 SY10 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis SY10 46 2468568 43.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/729/715/GCA_020729715.1_ASM2072971v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_J PRJNA749742 1305 SAMN20399967 ASM2072971v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.793 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 471.0x 95.02 100 0 99.99 0.1 GCF_020729715.1 JAJEOY01 2383 2483 2483 33 11 55 1 Streptococcus_sanguinis_homd_HMT_758 GCA_020729725.1 HMT-758 CR29 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis CR29 43 2486308 42.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/729/725/GCA_020729725.1_ASM2072972v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_V PRJNA749742 1305 SAMN20399948 ASM2072972v1 Contig A5-miseq v. 2015-05-22 2021-07-26T13:03:06.507 USA: Buffalo, NY dental plaque Illumina Institute for Genome Sciences, University of Maryland, Baltimore 180.0x 95.03 100 0.75 100 0.23 GCF_020729725.1 JAJEPA01 2405 2496 2496 29 5 56 1 Streptococcus_sanguinis_homd_HMT_758 GCA_020731325.1 HMT-662 FDAARGOS_1593 Named Cultivated Nasal (Abundance: Medium) HMT-662 Finegoldia magna FDAARGOS_1593 2 2063084 31.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/731/325/GCA_020731325.1_ASM2073132v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia;s__Finegoldia magna PRJNA231221 1260 SAMN22365122 ASM2073132v1 Contig canu v. 1.8 2021-10-18T08:48:04.370 Germany: Braunschweig DSMZ Isolate Pacbio; Illumina US Food and Drug Administration 1751.9x 99.98 99.39 4.01 99.99 2.03 GCF_020731325.1 JAJFOI01 1939 2034 2034 31 12 51 1 Finegoldia_magna_homd_HMT_662 GCA_020735385.1 HMT-596 FDAARGOS_1559 Named Cultivated Oral (Abundance: High) HMT-596 Granulicatella elegans FDAARGOS_1559 1 1890620 33.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/735/385/GCA_020735385.1_ASM2073538v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella elegans_B PRJNA231221 137732 SAMN22091656 ASM2073538v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.900 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3069.2x 98.91 0.55 99.52 0.19 GCF_020735385.1 1783 1904 1904 46 15 59 1 Granulicatella_elegans_homd_HMT_596 GCA_020735565.1 HMT-562 FDAARGOS_1588 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-562 Hoylesella buccalis FDAARGOS_1588 1 3308411 45.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/735/565/GCA_020735565.1_ASM2073556v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccalis PRJNA231221 28127 SAMN22091685 ASM2073556v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:05.460 USA: Silver Spring missing Pacbio; Illumina US Food and Drug Administration 7609.1x 99.99 99.29 0.83 99.95 0.24 GCF_020735565.1 2829 2911 2911 19 9 53 1 Hoylesella_buccalis_homd_HMT_562 GCA_020735605.1 HMT-974 FDAARGOS_1586 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-974 Parabacteroides merdae FDAARGOS_1586 1 4375800 45.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/735/605/GCA_020735605.1_ASM2073560v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae PRJNA231221 46503 SAMN22091683 ASM2073560v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:05.430 USA: Silver Spring missing Pacbio; Illumina US Food and Drug Administration 1765.8x 99.99 99.62 0 99.97 0.51 GCF_020735605.1 3618 3725 3725 14 16 77 0 Parabacteroides_merdae_homd_HMT_974 GCA_020735625.1 HMT-662 FDAARGOS_1557 Named Cultivated Nasal (Abundance: Medium) HMT-662 Finegoldia magna FDAARGOS_1557 2 1984762 32.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/735/625/GCA_020735625.1_ASM2073562v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia;s__Finegoldia magna_H PRJNA231221 1260 SAMN22091654 ASM2073562v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.867 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3550.2x 91.14 99.39 0 99.96 0.62 GCF_020735625.1 1840 1928 1928 26 12 49 1 Finegoldia_magna_homd_HMT_662 GCA_020735765.1 HMT-543 FDAARGOS_1569 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus FDAARGOS_1569 1 1876334 38.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/735/765/GCA_020735765.1_ASM2073576v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA231221 1671923 SAMN22091666 ASM2073576v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:05.136 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2016.5x 99.99 97.52 0 99.67 0.04 GCF_020735765.1 1783 1898 1898 56 9 49 1 Streptococcus_anginosus_homd_HMT_543 GCA_020735785.1 HMT-469 FDAARGOS_1566 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica FDAARGOS_1566 2 3168227 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/735/785/GCA_020735785.1_ASM2073578v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA231221 28132 SAMN22091663 ASM2073578v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:05.063 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1383.7x 99.99 99.32 0 99.97 0.01 GCF_020735785.1 2460 2535 2535 9 13 52 1 Prevotella_melaninogenica_homd_HMT_469 GCA_020735825.1 HMT-641 FDAARGOS_1562 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae FDAARGOS_1562 2 1842606 38.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/735/825/GCA_020735825.1_ASM2073582v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJNA231221 727 SAMN22091659 ASM2073582v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0, SPAdes v. 3.14.1 2021-10-06T15:31:04.947 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2616.2x 95.43 99.66 0.23 100 0.16 GCF_020735825.1 1718 1825 1825 30 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_020735905.1 HMT-469 FDAARGOS_1567 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica FDAARGOS_1567 2 3306754 40.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/735/905/GCA_020735905.1_ASM2073590v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJNA231221 28132 SAMN22091664 ASM2073590v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:05.087 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1742.8x 96.42 99.32 0 99.93 0 GCF_020735905.1 2658 2731 2731 8 12 52 1 Prevotella_melaninogenica_homd_HMT_469 GCA_020735945.1 HMT-973 FDAARGOS_1565 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-973 Parabacteroides distasonis FDAARGOS_1565 1 4812066 45.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/735/945/GCA_020735945.1_ASM2073594v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis PRJNA231221 823 SAMN22091662 ASM2073594v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.990 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1110.8x 99.99 99.42 0.38 99.98 0.9 GCF_020735945.1 3994 4114 4114 15 21 83 1 Parabacteroides_distasonis_homd_HMT_973 GCA_020736025.1 HMT-641 FDAARGOS_1561 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae FDAARGOS_1561 1 1834285 38.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/736/025/GCA_020736025.1_ASM2073602v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJNA231221 727 SAMN22091658 ASM2073602v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.930 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3727.7x 95.33 99.66 0.23 100 0.35 GCF_020736025.1 1705 1813 1813 31 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_020736045.1 HMT-641 FDAARGOS_1560 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae FDAARGOS_1560 1 1890662 38.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/736/045/GCA_020736045.1_ASM2073604v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJNA231221 727 SAMN22091657 ASM2073604v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.913 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 3327.3x 99.99 99.77 0 100 0.01 GCF_020736045.1 1792 1905 1905 34 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_020736065.1 HMT-662 FDAARGOS_1556 Named Cultivated Nasal (Abundance: Medium) HMT-662 Finegoldia magna FDAARGOS_1556 1 1738818 32.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/736/065/GCA_020736065.1_ASM2073606v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia;s__Finegoldia magna PRJNA231221 1260 SAMN22091653 ASM2073606v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.850 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2620.3x 96.5 99.39 0 99.96 0.05 GCF_020736065.1 1634 1718 1718 23 12 48 1 Finegoldia_magna_homd_HMT_662 GCA_020736165.1 HMT-700 FDAARGOS_1550 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea FDAARGOS_1550 1 2713235 39.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/736/165/GCA_020736165.1_ASM2073616v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA231221 1018 SAMN22091647 ASM2073616v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.740 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 1887.5x 96.22 100 0 99.98 0.05 GCF_020736165.1 2248 2318 2318 10 12 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_020736185.1 HMT-623 FDAARGOS_1548 Named Cultivated Oral (Abundance: High) HMT-623 Campylobacter gracilis FDAARGOS_1548 1 2281730 46.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/736/185/GCA_020736185.1_ASM2073618v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B gracilis PRJNA231221 824 SAMN22091645 ASM2073618v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.713 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2695.6x 99.99 97.47 0.43 99.96 0.12 GCF_020736185.1 2132 2186 2186 4 6 43 1 Campylobacter_gracilis_homd_HMT_623 GCA_020736205.1 HMT-748 FDAARGOS_1549 Named Cultivated Oral (Abundance: Medium) HMT-748 Campylobacter rectus FDAARGOS_1549 1 2571801 44.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/736/205/GCA_020736205.1_ASM2073620v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A rectus PRJNA231221 203 SAMN22091646 ASM2073620v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.726 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2264.0x 99.99 98.76 0.45 99.9 0.06 GCF_020736205.1 2328 2389 2389 5 6 49 1 Campylobacter_rectus_homd_HMT_748 GCA_020736225.1 HMT-580 FDAARGOS_1547 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus FDAARGOS_1547 1 1974909 44.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/736/225/GCA_020736225.1_ASM2073622v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJNA231221 200 SAMN22091644 ASM2073622v1 Complete Genome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.700 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2903.1x 99.99 99.51 0.37 99.64 0.07 GCF_020736225.1 1922 1980 1980 5 6 46 1 Campylobacter_curvus_homd_HMT_580 GCA_020736445.1 HMT-354 FDAARGOS_1555 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis FDAARGOS_1555 1 2374337 62.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/736/445/GCA_020736445.1_ASM2073644v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA231221 1667168 SAMN22091652 ASM2073644v1 Chromosome SMRT v. 9.0.0, HGAP v. 4.0 2021-10-06T15:31:04.833 Germany: Braunschweig missing Pacbio; Illumina US Food and Drug Administration 2365.2x 99.99 94.15 0.29 99.99 0.7 GCF_020736445.1 2105 2171 2171 6 10 49 1 Dermabacter_hominis_homd_HMT_354 GCA_020739965.1 HMT-116 AATYY Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis AATYY 18 2485315 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/739/965/GCA_020739965.1_ASM2073996v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA694925 29388 SAMN17729806 ASM2073996v1 Contig SPAdes v. 3.14.1 2021-02-01T14:55:12.803 USA Illumina MiSeq NHGRI/NIH 88.0x 98.9 99.81 0.36 100 0.51 GCF_020739965.1 JAJGBA01 2347 2465 2465 50 8 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_020740045.1 HMT-127 AATZL Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis AATZL 22 2277719 31.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/740/045/GCA_020740045.1_ASM2074004v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA694925 1290 SAMN17729817 ASM2074004v1 Contig SPAdes v. 3.14.1 2021-02-01T14:55:13.197 USA Illumina MiSeq NHGRI/NIH 90.0x 99.31 99.1 0.14 100 0.11 GCF_020740045.1 JAJGBD01 2206 2270 0 0 5 58 1 Staphylococcus_hominis_homd_HMT_127 GCA_020740065.1 HMT-116 AATZJ Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis AATZJ 16 2431250 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/740/065/GCA_020740065.1_ASM2074006v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA694925 29388 SAMN17729815 ASM2074006v1 Contig SPAdes v. 3.14.1 2021-02-01T14:55:13.123 USA Illumina MiSeq NHGRI/NIH 91.0x 99.97 99.81 0.08 99.99 0.01 GCF_020740065.1 JAJGBF01 2297 2417 2417 49 8 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_020740075.1 HMT-116 AATZA Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis AATZA 22 2514309 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/740/075/GCA_020740075.1_ASM2074007v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA694925 29388 SAMN17729808 ASM2074007v1 Contig SPAdes v. 3.14.1 2021-02-01T14:55:12.867 USA Illumina MiSeq NHGRI/NIH 88.0x 98.77 99.81 0.1 100 1.08 GCF_020740075.1 JAJGAZ01 2400 2520 2520 51 9 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_020740115.1 HMT-127 AATZB Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis AATZB 29 2277881 31.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/740/115/GCA_020740115.1_ASM2074011v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA694925 1290 SAMN17729809 ASM2074011v1 Contig SPAdes v. 3.14.1 2021-02-01T14:55:12.903 USA Illumina MiSeq NHGRI/NIH 95.0x 99.21 99.38 0.43 100 0.04 GCF_020740115.1 JAJGAY01 2211 2333 2333 58 7 56 1 Staphylococcus_hominis_homd_HMT_127 GCA_020740145.1 HMT-116 AATYZ Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis AATYZ 10 2440222 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/740/145/GCA_020740145.1_ASM2074014v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA694925 29388 SAMN17729807 ASM2074014v1 Contig SPAdes v. 3.14.1 2021-02-01T14:55:12.840 USA Illumina MiSeq NHGRI/NIH 88.0x 98.85 99.81 0.42 100 0.09 GCF_020740145.1 JAJGBB01 2317 2432 2432 48 7 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_020809485.1 HMT-531 CU1000N Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans CU1000N 1 2331529 44.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/809/485/GCA_020809485.1_ASM2080948v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA735719 714 SAMN19594576 ASM2080948v1 Complete Genome FALCON v. October 2020 2021-06-07T12:45:09.813 USA: New York City PacBio Sequel Rutgers School of Dental Medicine 892.0x 97.72 99.89 0.23 100 0.02 GCF_020809485.1 2205 2409 2409 130 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_020828775.1 HMT-776 YZU0716 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-776 Campylobacter sputorum YZU0716 31 1705795 29.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/828/775/GCA_020828775.1_ASM2082877v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F;s__Campylobacter_F sputorum PRJNA644129 206 SAMN15445726 ASM2082877v1 Contig SPAdes v. 3.10 2020-07-03T17:51:05.070 China: Jiangsu gastrointestinal tract Illumina MiSeq Yangzhou university 400.0x 97.86 99.14 0.92 99.99 0.05 GCF_020828775.1 JAJHDK01 1724 1776 1776 6 2 43 1 Campylobacter_sputorum_homd_HMT_776 GCA_020828825.1 HMT-776 YZU0717 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-776 Campylobacter sputorum YZU0717 30 1704821 29.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/828/825/GCA_020828825.1_ASM2082882v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F;s__Campylobacter_F sputorum PRJNA644129 206 SAMN15445727 ASM2082882v1 Contig SPAdes v. 3.10 2020-07-03T17:51:05.090 China: Jiangsu gastrointestinal tract Illumina MiSeq Yangzhou university 400.0x 97.85 99.14 0.92 99.99 0.06 GCF_020828825.1 JAJHDL01 1725 1777 1777 6 2 43 1 Campylobacter_sputorum_homd_HMT_776 GCA_020844005.1 HMT-152 4078 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-152 Streptococcus thermophilus 4078 1 1837840 39.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/844/005/GCA_020844005.1_ASM2084400v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus PRJNA681777 1308 SAMN16933231 ASM2084400v1 Complete Genome Unicycler v. JAN-2020 2020-11-27T05:37:05.147 Ireland Dairy PacBio RSII; Illumina MiSeq University College Cork 85.0x 98.7 99.89 0.15 99.99 0.19 GCF_020844005.1 1942 2105 2105 77 18 67 1 Streptococcus_thermophilus_homd_HMT_152 GCA_020882195.1 HMT-128 CGMH-SL118 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis CGMH-SL118 1 2813336 33.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/882/195/GCA_020882195.1_ASM2088219v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA589350 28035 SAMN13870882 ASM2088219v1 Complete Genome HGAP v. v4 2020-01-16T02:14:05.693 Taiwan blood PacBio Chang Gung Memorial Hospital 120.0x 99.55 99.38 0 100 0.45 GCF_020882195.1 2690 2857 2857 86 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_020883475.1 HMT-116 XZ03 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis XZ03 1 2565475 32.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/883/475/GCA_020883475.1_ASM2088347v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA779231 29388 SAMN23019561 ASM2088347v1 Complete Genome FALCON v. v0.3.0; Celera Assembler v. 8.3 2021-11-10T06:41:02.967 China blood PacBio RSII Affiliated Hospital of Xuzhou Medical University 230.0x 98.99 99.81 0.1 100 0.09 GCF_020883475.1 2442 2568 2568 47 16 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_020907165.1 HMT-116 AATYT Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis AATYT 16 2487323 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/907/165/GCA_020907165.1_ASM2090716v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA694925 29388 SAMN17729801 ASM2090716v1 Contig SPAdes v. 3.14.1 2021-02-01T14:55:12.590 USA skin Illumina MiSeq NHGRI/NIH 89.0x 98.9 99.81 0.36 100 0.51 GCF_020907165.1 JAJJQE01 2351 2470 2470 50 9 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_020911985.1 HMT-554 ATCC 19606 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-554 Acinetobacter baumannii ATCC 19606 2 3999499 39.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/911/985/GCA_020911985.1_ASM2091198v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii PRJNA729114 470 SAMN19110717 ASM2091198v1 Complete Genome HGAP v. 4 2021-05-11T18:37:04.653 not applicable PacBio Sequel University of Georgia 1947.0x 99.99 99.63 0 100 0.16 GCF_020911985.1 3727 3860 3860 41 18 73 1 Acinetobacter_baumannii_homd_HMT_554 GCA_020912025.1 HMT-352 OHS0013 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 OHS0013 39 760861 43.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/912/025/GCA_020912025.1_ASM2091202v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp900556355 PRJNA717815 2725945 SAMN18522312 ASM2091202v1 Contig SPAdes v. 3.10.1 2021-03-28T20:49:07.070 Brazil: Manaus, Amazonas oral cavity Illumina HiSeq Amazonas State University 13.4x 63.25 0.85 95.28 0.51 JAGTWK01 766 818 818 6 5 41 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_021010665.2 HMT-530 EASDk81B Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes EASDk81B 1 2497202 60.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/010/665/GCA_021010665.2_ASM2101066v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA769547 1747 SAMN22141945 ASM2101066v2 Complete Genome Unicycler v. 0.4.8 2021-10-08T04:41:05.363 Denmark: Aarhus hospital Illumina MiSeq; Oxford Nanopore MinION Aarhus University 150.0x 99.96 100 0 99.98 0.02 GCF_021010665.2 2315 2394 2394 23 9 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_021010715.2 HMT-530 EASDk81A Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes EASDk81A 1 2560652 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/010/715/GCA_021010715.2_ASM2101071v2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA769547 1747 SAMN22141944 ASM2101071v2 Complete Genome Unicycler v. 0.4.8 2021-10-08T04:41:05.347 Denmark: Aarhus hospital Illumina MiSeq; Oxford Nanopore MinION Aarhus University 150.0x 99.16 100 0 100 0.09 GCF_021010715.2 2362 2443 2443 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_021013185.1 HMT-686 B30 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B30 20 1963415 36.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/013/185/GCA_021013185.1_ASM2101318v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA541201 1309 SAMN18353238 ASM2101318v1 Contig SOAPdenovo v. 2.04 2021-03-18T22:29:04.937 China: Beijing oral cavity Illumina Institute of Microbiology, Chinese Academy of Sciences 12.0x 99.12 100 0.56 100 0.1 GCF_021013185.1 JAGEVH01 1864 1946 1946 28 5 48 1 Streptococcus_mutans_homd_HMT_686 GCA_021025975.1 HMT-956 CCUG 2156 Named Cultivated Oral (Abundance: High) HMT-956 Neisseria cinerea CCUG 2156 29 1861283 50.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/025/975/GCA_021025975.1_ASM2102597v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria cinerea PRJNA305687 483 SAMN23424481 ASM2102597v1 Scaffold SPAdes v. 3.13.0 2021-11-24T10:39:03.470 Germany nasopharynx, normal mucosa Ion Torrent University of Gothenburg - CCUG 196.0x 99.98 98.34 0 99.99 0 GCF_021025975.1 JAJNBX01 1750 1830 1830 32 3 44 1 Neisseria_cinerea_homd_HMT_956 GCA_021117155.1 HMT-076 HL28 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri HL28 3 2562829 32.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/117/155/GCA_021117155.1_ASM2111715v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA781799 2897335 SAMN23296442 ASM2111715v1 Complete Genome SPAdes v. v0.4.9b 2021-11-19T05:39:06.136 South Korea: Changwon human skin swab Oxford Nanopore MinION; Illumina NovaSeq Changwon National University 2301.0x 99.73 0 100 0.09 GCF_021117155.1 2437 2575 2575 56 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_021172825.1 HMT-550 UNC_SaCF35 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus UNC_SaCF35 1 2854518 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/172/825/GCA_021172825.1_ASM2117282v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA749299 1280 SAMN23701160 ASM2117282v1 Complete Genome Flye v. 2.8.3 2021-12-06T10:40:03.400 missing missing Oxford Nanopore MinION University of North Carolina at Chapel Hill 8.0x 97.86 99.44 0.22 100 0.15 GCF_021172825.1 2656 2855 2855 119 19 60 1 Staphylococcus_aureus_homd_HMT_550 GCA_021189295.1 HMT-076 N95 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri N95 33 2446622 32.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/189/295/GCA_021189295.1_ASM2118929v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri_A PRJNA636233 1292 SAMN20525618 ASM2118929v1 Contig SPAdes v. 3.14.1 2021-08-03T06:11:10.740 India: Assam, Guwahati nasal swab Illumina HiSeq NEOSTAR_Indo-UK Project on AMR 75.0x 94.11 99.73 0 100 0.09 GCF_021189295.1 JAIBNN01 2362 2484 2484 52 8 61 1 Staphylococcus_warneri_homd_HMT_076 GCA_021189315.1 HMT-076 N92 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri N92 28 2446223 32.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/189/315/GCA_021189315.1_ASM2118931v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri_A PRJNA636233 1292 SAMN20525617 ASM2118931v1 Contig SPAdes v. 3.14.1 2021-08-03T06:11:10.726 India: Assam, Guwahati nasal swab Illumina HiSeq NEOSTAR_Indo-UK Project on AMR 75.0x 94.11 99.73 0 100 0.09 GCF_021189315.1 JAIBNO01 2362 2486 2486 52 9 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_021193625.2 HMT-621 10574 Named Cultivated Pathogen (Abundance: Scarce) HMT-621 Neisseria gonorrhoeae 10574 2 2218166 52.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/193/625/GCA_021193625.2_ASM2119362v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria gonorrhoeae PRJNA768989 485 SAMN22600672 ASM2119362v2 Complete Genome Unicycler v. 0.4.8 2021-10-27T08:47:04.043 Russia: Kaluga urethal swab Illumina MiniSeq; Oxford Nanopore MinION Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 208.0x 99.56 99.75 0.21 99.99 0.12 GCF_021193625.2 2216 2306 2306 21 12 56 1 Neisseria_gonorrhoeae_homd_HMT_621 GCA_021222645.1 HMT-352 KC1 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 KC1 1 677938 42.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/222/645/GCA_021222645.1_ASM2122264v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp021222645 PRJNA786095 2899133 SAMN23619004 ASM2122264v1 Complete Genome MEGAHIT v. 1.2.9 2021-12-04T07:17:03.810 USA: Oak Ridge TN Illumina MiSeq Oak Ridge National Laboratory 1200.0x 64.67 0 98.74 0.13 GCF_021222645.1 684 733 733 5 3 41 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_021228055.1 HMT-818 VHProbi M07 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-818 Limosilactobacillus reuteri VHProbi M07 1 2041530 38.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/228/055/GCA_021228055.1_ASM2122805v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus reuteri PRJNA785010 1598 SAMN23525688 ASM2122805v1 Complete Genome SOAPdenovo v. Version 2.04 2021-11-30T19:51:03.087 China Breast milk Illumina HiSeq; PacBio RS Nutrition &Health Technology Center 1170.7x 99.99 99.45 0 99.85 0.46 GCF_021228055.1 2012 2171 2171 71 18 69 1 Limosilactobacillus_reuteri_homd_HMT_818 GCA_021266585.1 HMT-756 BNS11 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-756 Ligilactobacillus salivarius BNS11 7 2298974 32.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/266/585/GCA_021266585.1_ASM2126658v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius PRJNA789063 1624 SAMN24045799 ASM2126658v1 Complete Genome Unicycler v. 0.4.3 2021-12-15T00:50:03.507 China: Heilongjiang province Illumina HiSeq; Oxford Nanopore MinION Chinese Academy of Agricultural Sciences 160.0x 98.04 98.95 0 99.86 0.29 GCF_021266585.1 2225 2365 2365 38 22 79 1 Ligilactobacillus_salivarius_homd_HMT_756 GCA_021270905.1 HMT-120 Ani_LG-048 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus Ani_LG-048 5 2649024 32.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/270/905/GCA_021270905.1_ASM2127090v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA609060 1283 SAMN11968189 ASM2127090v1 Contig canu v. 1.8 2019-06-06T10:07:05.600 Belgium milk sample Oxford Nanopore MinION; Illumina NovaSeq ANIWHA 174.0x 97.11 99.62 5.19 99.99 3.33 JAAWEN01 2673 2848 2848 92 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_021294795.1 HMT-425 SPPN-FOHM Named Cultivated Oral (Abundance: No Data) HMT-425 Streptococcus pseudopneumoniae SPPN-FOHM 138 2184713 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/294/795/GCA_021294795.1_ASM2129479v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae PRJNA789526 257758 SAMN24116475 ASM2129479v1 Scaffold SPAdes v. 3.13.1 2021-12-16T10:25:04.150 Sweden: Stockholm, Danderyd ho blood IonTorrent Karolinska Institutet 101.0x 97.27 99.55 0.2 99.97 0.58 GCF_021294795.1 JAJSBG01 2133 2247 2247 65 3 45 1 Streptococcus_pseudopneumoniae_homd_HMT_425 GCA_021308695.1 HMT-531 HK 1659 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HK 1659 22 2077434 44.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/308/695/GCA_021308695.1_ASM2130869v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969762 ASM2130869v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.927 Denmark missing Illumina NextSeq Aarhus University Hospital, Denmark 97.5x 99.1 99.66 0 100 0.09 GCF_021308695.1 JABJZJ01 1974 2086 2086 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021308715.1 HMT-531 HK 1631 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HK 1631 21 2070210 44.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/308/715/GCA_021308715.1_ASM2130871v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969761 ASM2130871v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.910 Denmark missing Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.11 99.66 0 100 0.08 GCF_021308715.1 JABJZK01 1970 2082 2082 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021308795.1 HMT-531 708G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 708G 27 2130593 44.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/308/795/GCA_021308795.1_ASM2130879v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969756 ASM2130879v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.820 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 98.93 99.89 0 100 0.04 GCF_021308795.1 JABJZP01 2037 2146 2146 58 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021308835.1 HMT-531 HK 1630 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HK 1630 23 2065593 44.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/308/835/GCA_021308835.1_ASM2130883v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969760 ASM2130883v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.890 Denmark missing Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.1 99.66 0 100 0.1 GCF_021308835.1 JABJZL01 1963 2075 2075 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021308855.1 HMT-531 654G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 654G 24 2066676 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/308/855/GCA_021308855.1_ASM2130885v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969754 ASM2130885v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.790 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 99.1 99.43 0 100 0.1 GCF_021308855.1 JABJZR01 1971 2082 2082 61 4 45 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021308875.1 HMT-531 369G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 369G 26 2077690 44.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/308/875/GCA_021308875.1_ASM2130887v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969740 ASM2130887v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.547 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.1 99.43 0 100 0.1 GCF_021308875.1 JABKAF01 1979 2090 2090 61 3 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021308915.1 HMT-531 ET14 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans ET14 24 2066090 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/308/915/GCA_021308915.1_ASM2130891v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969758 ASM2130891v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.857 Brazil missing Illumina NextSeq Aarhus University Hospital, Denmark 97.5x 99.1 99.66 0 100 0.1 GCF_021308915.1 JABJZN01 1969 2080 2080 61 4 45 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309015.1 HMT-531 217G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 217G 28 2105953 44.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/015/GCA_021309015.1_ASM2130901v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969738 ASM2130901v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.513 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 98.97 99.89 0 100 0.04 GCF_021309015.1 JABKAH01 2005 2116 2116 60 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309025.1 HMT-531 311M Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 311M 27 2097408 44.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/025/GCA_021309025.1_ASM2130902v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969739 ASM2130902v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.530 Morocco subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 94.5x 99.11 99.89 0.08 100 0.02 GCF_021309025.1 JABKAG01 2020 2130 2130 59 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309195.1 HMT-531 UP18 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans UP18 22 2067147 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/195/GCA_021309195.1_ASM2130919v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969795 ASM2130919v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.467 USA missing Illumina NextSeq Aarhus University Hospital, Denmark 97.5x 99.1 99.66 0 100 0.1 GCF_021309195.1 JABJYC01 1972 2084 2084 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309205.1 HMT-531 UP14 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans UP14 22 2067549 44.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/205/GCA_021309205.1_ASM2130920v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969794 ASM2130920v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.450 USA missing Illumina NextSeq Aarhus University Hospital, Denmark 98.5x 99.1 99.66 0 100 0.09 GCF_021309205.1 JABJYD01 1966 2077 2077 61 4 45 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309215.1 HMT-531 UP6 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans UP6 25 2066325 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/215/GCA_021309215.1_ASM2130921v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969798 ASM2130921v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.517 USA missing Illumina NextSeq Aarhus University Hospital, Denmark 98.5x 99.1 99.66 0 100 0.09 GCF_021309215.1 JABJXZ01 1965 2076 2076 61 3 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309225.1 HMT-531 UP23 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans UP23 22 2067092 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/225/GCA_021309225.1_ASM2130922v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969796 ASM2130922v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.483 USA missing Illumina NextSeq Aarhus University Hospital, Denmark 98.5x 99.1 99.66 0 100 0.1 GCF_021309225.1 JABJYB01 1970 2082 2082 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309275.1 HMT-531 UP50 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans UP50 26 2122336 44.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/275/GCA_021309275.1_ASM2130927v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969797 ASM2130927v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.500 USA missing Illumina NextSeq Aarhus University Hospital, Denmark 96.0x 99.05 99.89 0 100 0.07 GCF_021309275.1 JABJYA01 2046 2159 2159 61 4 47 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309295.1 HMT-531 UP11 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans UP11 21 2067812 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/295/GCA_021309295.1_ASM2130929v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969793 ASM2130929v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.433 USA missing Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.1 99.66 0 100 0.1 GCF_021309295.1 JABJYE01 1975 2087 2087 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309315.1 HMT-531 OMZ 678 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans OMZ 678 21 2068141 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/315/GCA_021309315.1_ASM2130931v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969789 ASM2130931v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.367 Switzerland missing Illumina NextSeq Aarhus University Hospital, Denmark 96.5x 99.1 99.66 0 100 0.09 GCF_021309315.1 JABJYI01 1966 2078 2078 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309335.1 HMT-531 UP10 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans UP10 21 2067863 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/335/GCA_021309335.1_ASM2130933v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969792 ASM2130933v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.417 USA missing Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.1 99.66 0 100 0.1 GCF_021309335.1 JABJYF01 1973 2085 2085 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309475.1 HMT-531 OMGS 2516 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans OMGS 2516 26 2066755 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/475/GCA_021309475.1_ASM2130947v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969788 ASM2130947v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.350 Sweden missing Illumina NextSeq Aarhus University Hospital, Denmark 99.0x 99.1 99.66 0 100 0.1 GCF_021309475.1 JABJYJ01 1968 2079 2079 60 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309535.1 HMT-531 OMGS 2176 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans OMGS 2176 29 2096147 44.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/535/GCA_021309535.1_ASM2130953v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969787 ASM2130953v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.333 Sweden missing Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.08 99.43 0 100 0.1 GCF_021309535.1 JABJYK01 2009 2122 2122 62 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309595.1 HMT-531 HK 978 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HK 978 25 2076828 44.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/595/GCA_021309595.1_ASM2130959v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969782 ASM2130959v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.243 Denmark subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 99.88 99.89 0 100 0.02 GCF_021309595.1 JABJYP01 1986 2091 2091 55 4 45 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309635.1 HMT-531 PH541 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans PH541 24 2028232 44.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/635/GCA_021309635.1_ASM2130963v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969780 ASM2130963v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.193 Denmark missing Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.89 99.89 0 100 0 GCF_021309635.1 JABJYR01 1925 2030 2030 55 4 45 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309645.1 HMT-531 HG1216 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HG1216 21 2040431 44.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/645/GCA_021309645.1_ASM2130964v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969779 ASM2130964v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.177 Netherlands missing Illumina NextSeq Aarhus University Hospital, Denmark 99.0x 99.87 99.89 0.08 100 0 GCF_021309645.1 JABJYS01 1954 2060 2060 54 5 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309675.1 HMT-531 HG1217 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HG1217 28 2079354 44.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/675/GCA_021309675.1_ASM2130967v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969778 ASM2130967v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.157 Netherlands missing Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 99.09 99.43 0.08 100 0.1 GCF_021309675.1 JABJYT01 1983 2092 2092 61 4 43 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309695.1 HMT-531 HG1236 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HG1236 23 2135833 44.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/695/GCA_021309695.1_ASM2130969v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969776 ASM2130969v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.030 Netherlands missing Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 99.11 99.89 0 100 0.06 GCF_021309695.1 JABJYV01 2061 2169 2169 58 4 45 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309715.1 HMT-531 HK 2017 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HK 2017 26 2071201 44.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/715/GCA_021309715.1_ASM2130971v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969774 ASM2130971v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:06.857 Israel subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.11 99.66 0 100 0.09 GCF_021309715.1 JABJYX01 1971 2082 2082 61 3 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309735.1 HMT-531 HG1183 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HG1183 22 2065955 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/735/GCA_021309735.1_ASM2130973v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969777 ASM2130973v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.133 Netherlands missing Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.1 99.66 0 100 0.11 GCF_021309735.1 JABJYU01 1961 2073 2073 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309755.1 HMT-531 HG1229 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HG1229 25 2122305 44.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/755/GCA_021309755.1_ASM2130975v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969775 ASM2130975v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:07.007 Netherlands missing Illumina NextSeq Aarhus University Hospital, Denmark 96.0x 99.05 99.89 0 100 0.09 GCF_021309755.1 JABJYW01 2050 2163 2163 61 4 47 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309765.1 HMT-531 362M Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 362M 21 2081488 44.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/765/GCA_021309765.1_ASM2130976v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969773 ASM2130976v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:06.753 Morocco subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 99.11 99.66 0 100 0.08 GCF_021309765.1 JABJYY01 1991 2103 2103 62 4 45 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309815.1 HMT-531 309M Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 309M 21 2077138 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/815/GCA_021309815.1_ASM2130981v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969771 ASM2130981v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:06.713 Morocco subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.11 99.66 0 100 0.09 GCF_021309815.1 JABJZA01 1979 2091 2091 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309825.1 HMT-531 HK 1990 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans HK 1990 24 2073469 44.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/825/GCA_021309825.1_ASM2130982v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969770 ASM2130982v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:06.603 Netherlands subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.1 99.66 0 100 0.09 GCF_021309825.1 JABJZB01 1977 2088 2088 61 4 45 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309915.1 HMT-531 102-B Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 102-B 29 2110628 44.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/915/GCA_021309915.1_ASM2130991v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969766 ASM2130991v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:06.190 Chile subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 96.5x 99.11 99.89 0.08 100 0.01 GCF_021309915.1 JABJZF01 2037 2149 2149 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309955.1 HMT-531 ET19 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans ET19 22 2067856 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/955/GCA_021309955.1_ASM2130995v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969759 ASM2130995v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.873 Brazil missing Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 99.1 99.66 0 100 0.1 GCF_021309955.1 JABJZM01 1977 2089 2089 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309965.1 HMT-531 744G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 744G 26 2133209 44.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/965/GCA_021309965.1_ASM2130996v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969757 ASM2130996v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.837 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.09 99.89 0 100 0.04 GCF_021309965.1 JABJZO01 2054 2164 2164 59 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021309995.1 HMT-531 666G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 666G 25 2108730 44.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/309/995/GCA_021309995.1_ASM2130999v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969755 ASM2130999v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.807 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 96.0x 99.06 99.66 0 100 0.13 GCF_021309995.1 JABJZQ01 2029 2142 2142 62 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021310015.1 HMT-531 605G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 605G 30 2079435 44.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/310/015/GCA_021310015.1_ASM2131001v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969751 ASM2131001v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.733 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.08 99.55 0 100 0.09 GCF_021310015.1 JABJZU01 1976 2087 2087 61 3 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021310035.1 HMT-531 638G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 638G 26 2078016 44.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/310/035/GCA_021310035.1_ASM2131003v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969752 ASM2131003v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.753 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 99.1 99.43 0 100 0.1 GCF_021310035.1 JABJZT01 1981 2092 2092 61 3 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021310095.1 HMT-531 524G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 524G 22 2067892 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/310/095/GCA_021310095.1_ASM2131009v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969749 ASM2131009v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.700 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 99.1 99.66 0 100 0.1 GCF_021310095.1 JABJZW01 1974 2086 2086 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021310125.1 HMT-531 488G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 488G 22 2067699 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/310/125/GCA_021310125.1_ASM2131012v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969747 ASM2131012v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.667 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 98.0x 99.1 99.66 0 100 0.09 GCF_021310125.1 JABJZY01 1976 2088 2088 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021310155.1 HMT-531 486G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 486G 24 2103326 44.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/310/155/GCA_021310155.1_ASM2131015v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969746 ASM2131015v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.650 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 97.0x 99.1 99.66 0 100 0.08 GCF_021310155.1 JABJZZ01 2008 2120 2120 61 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021310165.1 HMT-531 467G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 467G 28 2122954 44.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/310/165/GCA_021310165.1_ASM2131016v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969745 ASM2131016v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.633 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 95.0x 98.91 99.89 0 100 0.04 GCF_021310165.1 JABKAA01 2040 2149 2149 58 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021310195.1 HMT-531 443G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 443G 21 2076398 44.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/310/195/GCA_021310195.1_ASM2131019v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969744 ASM2131019v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.617 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 96.0x 99.1 99.43 0 100 0.09 GCF_021310195.1 JABKAB01 1980 2093 2093 63 3 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021310215.1 HMT-531 437G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 437G 29 2092586 44.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/310/215/GCA_021310215.1_ASM2131021v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969743 ASM2131021v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.597 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 97.5x 99.07 99.66 0 100 0.1 GCF_021310215.1 JABKAC01 2011 2124 2124 62 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021310295.1 HMT-531 1G Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 1G 28 2121891 44.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/310/295/GCA_021310295.1_ASM2131029v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA633763 714 SAMN14969736 ASM2131029v1 Contig Unicycler: v. 0.4.7 2020-05-19T07:05:05.480 Ghana subgingival plaque Illumina NextSeq Aarhus University Hospital, Denmark 1.0x 98.92 99.89 0 100 0.04 GCF_021310295.1 JABKAJ01 2040 2149 2149 58 4 46 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_021341835.1 HMT-073 XMC Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis XMC 18 2100255 41.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/341/835/GCA_021341835.1_ASM2134183v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp021341835 PRJNA791165 2905972 SAMN24256142 ASM2134183v1 Scaffold SPAdes v. v3.14.1 2021-12-21T03:27:03.090 China: Dalian Oral plaque Illumina NovaSeq Dalian Medical University 100.0x 100 0.4 100 0.03 GCF_021341835.1 JAJTNQ01 1966 2056 2056 38 5 46 1 Streptococcus_australis_homd_HMT_073 GCA_021366525.1 HMT-127 Ani-LG-162 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis Ani-LG-162 27 2226036 31.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/366/525/GCA_021366525.1_ASM2136652v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA609060 1290 SAMN19114594 ASM2136652v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:06.060 Belgium:Liege milk samples Illumina NovaSeq ANIWHA 85.7x 98.64 99.38 0.57 99.93 0.03 GCF_021366525.1 JAHCQD01 2148 2273 2273 54 9 61 1 Staphylococcus_hominis_homd_HMT_127 GCA_021366695.1 HMT-127 Ani-LG-137 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis Ani-LG-137 28 2244302 31.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/366/695/GCA_021366695.1_ASM2136669v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA609060 1290 SAMN19114591 ASM2136669v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:06.020 Belgium:Liege milk samples Illumina NovaSeq ANIWHA 100.0x 98.65 99.38 0.57 99.91 0.03 GCF_021366695.1 JAHCQA01 2161 2279 2279 53 9 55 1 Staphylococcus_hominis_homd_HMT_127 GCA_021366815.1 HMT-076 Ani-LG-057 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri Ani-LG-057 36 2556958 32.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/366/815/GCA_021366815.1_ASM2136681v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA609060 1292 SAMN19114579 ASM2136681v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:05.850 Belgium:Liege milk samples Illumina NovaSeq ANIWHA 273.5x 99.66 99.73 0 99.99 0.03 GCF_021366815.1 JAHCPQ01 2475 2598 2598 53 7 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_021366975.1 HMT-127 Ani-LG-038 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis Ani-LG-038 30 2191896 31.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/366/975/GCA_021366975.1_ASM2136697v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA609060 1290 SAMN19114573 ASM2136697v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:05.770 Belgium:Liege milk samples Illumina NovaSeq ANIWHA 208.6x 99.19 99.38 1.14 99.98 0.09 GCF_021366975.1 JAHCPK01 2129 2253 2253 51 10 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_021366995.1 HMT-120 Ani-LG-036 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus Ani-LG-036 39 2428110 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/366/995/GCA_021366995.1_ASM2136699v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA609060 1283 SAMN19114572 ASM2136699v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:05.757 Belgium:Liege milk samples Illumina NovaSeq ANIWHA 227.3x 97.58 99.62 0.1 100 0.07 GCF_021366995.1 JAHCPJ01 2348 2495 2495 76 9 61 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_021367115.1 HMT-120 Ani-LG-021 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus Ani-LG-021 40 2526847 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/367/115/GCA_021367115.1_ASM2136711v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA609060 1283 SAMN19114565 ASM2136711v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:05.663 Belgium:Liege milk samples Illumina NovaSeq ANIWHA 156.4x 97.38 99.62 0.08 100 0.09 GCF_021367115.1 JAHCPC01 2453 2603 2603 79 9 61 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_021367155.1 HMT-120 Ani-LG-019 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus Ani-LG-019 43 2495438 32.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/367/155/GCA_021367155.1_ASM2136715v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA609060 1283 SAMN19114564 ASM2136715v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:05.650 Belgium:Liege milk samples Illumina NovaSeq ANIWHA 104.3x 97.32 99.51 0 100 0.03 GCF_021367155.1 JAHCPB01 2433 2587 2587 81 10 62 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_021367495.1 HMT-120 Ani-GT-046 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus Ani-GT-046 51 2495433 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/367/495/GCA_021367495.1_ASM2136749v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA609060 1283 SAMN19114544 ASM2136749v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:05.380 Belgium:Ghent milk samples Illumina NovaSeq ANIWHA 161.4x 97.41 99.62 0.57 100 0.08 GCF_021367495.1 JAHCOH01 2439 2588 2588 79 8 61 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_021367505.1 HMT-120 Ani-GT-050 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus Ani-GT-050 45 2456533 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/367/505/GCA_021367505.1_ASM2136750v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA609060 1283 SAMN19114546 ASM2136750v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:05.410 Belgium:Ghent milk samples Illumina NovaSeq ANIWHA 194.2x 97.42 99.05 0 100 0.03 GCF_021367505.1 JAHCOJ01 2382 2525 2525 73 10 59 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_021367585.1 HMT-331 Ani-GT-018 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis Ani-GT-018 29 2195146 37.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/367/585/GCA_021367585.1_ASM2136758v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJNA609060 29379 SAMN19114540 ASM2136758v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:05.327 Belgium:Ghent milk samples Illumina NovaSeq ANIWHA 177.7x 95.76 99.45 0 99.95 0.03 GCF_021367585.1 JAHCOE01 2069 2176 2176 38 9 59 1 Staphylococcus_auricularis_homd_HMT_331 GCA_021367725.1 HMT-120 Ani-GT-003 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus Ani-GT-003 40 2449567 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/367/725/GCA_021367725.1_ASM2136772v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA609060 1283 SAMN19114537 ASM2136772v1 Contig Shovill v. 1.0.4 2021-05-12T06:19:05.273 Belgium:Ghent milk samples Illumina NovaSeq ANIWHA 66.1x 97.43 99.05 0 100 0.07 GCF_021367725.1 JAHCOB01 2381 2531 2531 76 10 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_021378605.1 HMT-654 APC055-529-1D Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-654 Eggerthella lenta APC055-529-1D 2 3467966 64.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/378/605/GCA_021378605.1_ASM2137860v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella;s__Eggerthella lenta PRJNA787074 84112 SAMN23789010 ASM2137860v1 Complete Genome Unicycler v. v0.4.8 2021-12-08T12:15:10.137 Ireland feaces Illumina; Oxford Nanopore Unversity College Cork 30.0x 98.51 100 0.81 100 0.37 GCF_021378605.1 2988 3062 3062 14 9 50 1 Eggerthella_lenta_homd_HMT_654 GCA_021378625.1 HMT-654 APC055-928-H3-3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-654 Eggerthella lenta APC055-928-H3-3 1 3266279 64.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/378/625/GCA_021378625.1_ASM2137862v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella;s__Eggerthella lenta PRJNA787247 84112 SAMN23789279 ASM2137862v1 Complete Genome Unicycler v. v0.4.8 2021-12-08T12:54:04.107 Ireland feaces Illumina; Oxford Nanopore University College Cork 30.0x 98.36 100 0.81 100 0.05 GCF_021378625.1 2746 2818 2818 12 9 50 1 Eggerthella_lenta_homd_HMT_654 GCA_021378645.1 HMT-654 APC055-943-4 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-654 Eggerthella lenta APC055-943-4 1 3504888 64.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/378/645/GCA_021378645.1_ASM2137864v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella;s__Eggerthella lenta PRJNA787249 84112 SAMN23789285 ASM2137864v1 Complete Genome Unicycler v. v0.4.8 2021-12-08T12:59:03.863 Ireland feaces Illumina; Oxford Nanopore University College Cork 30.0x 98.47 100 0.81 99.96 0.62 GCF_021378645.1 2940 3009 3009 9 8 51 1 Eggerthella_lenta_homd_HMT_654 GCA_021378665.1 HMT-654 APC055-539-5C Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-654 Eggerthella lenta APC055-539-5C 1 3567447 64.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/378/665/GCA_021378665.1_ASM2137866v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella;s__Eggerthella lenta PRJNA787237 84112 SAMN23789061 ASM2137866v1 Complete Genome Unicycler v. v0.4.8 2021-12-08T12:24:04.087 Ireland feaces Illumina; Oxford Nanopore Unversity College Cork 30.0x 98.22 100 0.81 100 0.81 GCF_021378665.1 3039 3112 3112 11 9 52 1 Eggerthella_lenta_homd_HMT_654 GCA_021378685.1 HMT-654 APC055-920-1E Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-654 Eggerthella lenta APC055-920-1E 1 3383173 63.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/378/685/GCA_021378685.1_ASM2137868v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella;s__Eggerthella lenta PRJNA787239 84112 SAMN23789160 ASM2137868v1 Complete Genome Unicycler v. v0.4.8 2021-12-08T12:37:05.447 Ireland feaces Illumina; Oxford Nanopore University College Cork 30.0x 98.46 100 1.61 100 0.33 GCF_021378685.1 2852 2925 2925 13 9 50 1 Eggerthella_lenta_homd_HMT_654 GCA_021378725.1 HMT-654 APC-F2-3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-654 Eggerthella lenta APC-F2-3 3 3258764 64.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/378/725/GCA_021378725.1_ASM2137872v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella;s__Eggerthella lenta PRJNA787250 84112 SAMN23789468 ASM2137872v1 Complete Genome Unicycler v. v0.4.8 2021-12-08T13:05:04.257 Ireland feaces Illumina; Oxford Nanopore University College Cork 30.0x 98.42 100 0.81 99.99 0.05 GCF_021378725.1 2748 2820 2820 12 9 50 1 Eggerthella_lenta_homd_HMT_654 GCA_021390135.1 HMT-550 RN6390 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus RN6390 2 2742047 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/390/135/GCA_021390135.1_ASM2139013v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA789916 1280 SAMN24173961 ASM2139013v1 Complete Genome SPAdes v. AUG-2021 2021-12-17T17:03:02.476 USA: New York Oxford Nanopore; Illumina Newcastle University 114.0x 99.95 99.51 0.08 100 0.1 GCF_021390135.1 2492 2684 2684 110 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_021398235.1 HMT-734 19A-19087 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 19A-19087 1 2159119 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/398/235/GCA_021398235.1_ASM2139823v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA715031 1313 SAMN18323756 ASM2139823v1 Complete Genome HGAP v. V4; CANU v. V1.7.1 2021-03-17T02:35:04.840 China:Zhengzhou sputum Illumina NovaSeq; Pacbio SequelSequel Childrens Hospital Affiliated to Zhengzhou University 570.0x 98.55 99.42 0.2 100 0.3 GCF_021398235.1 2176 2327 2327 79 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_021398305.1 HMT-601 CBPA-ST-10002 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis CBPA-ST-10002 4 2473252 32.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/398/305/GCA_021398305.1_ASM2139830v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA715203 1282 SAMN17983070 ASM2139830v1 Complete Genome Unicycler v. v0.4.8 2021-02-19T08:00:07.336 Canada isolated from contaminated platelets Illumina MiSeq; Oxford Nanopore MinION Health Canada 418.0x 99.5 99.81 0 99.98 0.11 GCF_021398305.1 2261 2425 2425 84 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_021398325.1 HMT-601 CBPA-ST-11003 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis CBPA-ST-11003 2 2591267 32.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/398/325/GCA_021398325.1_ASM2139832v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA715211 1282 SAMN17983071 ASM2139832v1 Complete Genome Unicycler v. v0.4.8 2021-02-19T08:00:07.363 Canada isolated from contaminated platelets Illumina MiSeq; Oxford Nanopore MinION Health Canada 475.0x 97.18 99.67 0 100 0.09 GCF_021398325.1 2405 2560 2560 76 19 59 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_021398345.1 HMT-601 AZ22 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis AZ22 2 2475286 32.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/398/345/GCA_021398345.1_ASM2139834v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA715221 1282 SAMN17983072 ASM2139834v1 Complete Genome Unicycler v. v0.4.8 2021-02-19T08:00:07.383 Canada human skin swabs of healthy volunteers Illumina MiSeq; Oxford Nanopore MinION Health Canada 297.0x 99.56 99.67 0.28 100 0.06 GCF_021398345.1 2282 2439 2439 77 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_021406605.1 HMT-619 JKG10 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis JKG10 112 2366674 48.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/605/GCA_021406605.1_ASM2140660v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134864 ASM2140660v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.407 Japan Illumina NovaSeq Health Sciences University of Hokkaido 708.0x 98.49 99.92 0.63 99.99 0.45 GCF_021406605.1 JAEMBG01 2050 2128 2128 27 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406625.1 HMT-619 EM3 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis EM3 115 2332868 48.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/625/GCA_021406625.1_ASM2140662v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134862 ASM2140662v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.353 Japan Illumina NovaSeq Health Sciences University of Hokkaido 792.0x 98.48 99.92 0 99.98 0.3 GCF_021406625.1 JAEMBI01 2012 2073 2073 11 2 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406645.1 HMT-619 B158 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis B158 85 2265994 48.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/645/GCA_021406645.1_ASM2140664v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134861 ASM2140664v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.333 Japan Illumina NovaSeq Health Sciences University of Hokkaido 750.0x 98.62 99.92 0 99.99 0.25 GCF_021406645.1 JAEMBJ01 1896 1961 1961 11 6 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406655.1 HMT-619 JKG9 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis JKG9 97 2382938 48.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/655/GCA_021406655.1_ASM2140665v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134863 ASM2140665v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.370 Japan Illumina NovaSeq Health Sciences University of Hokkaido 750.0x 98.54 99.92 0 100 0.32 GCF_021406655.1 JAEMBH01 2030 2102 2102 11 9 51 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406685.1 HMT-619 1439 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 1439 87 2253658 48.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/685/GCA_021406685.1_ASM2140668v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134859 ASM2140668v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.293 Japan Illumina NovaSeq Health Sciences University of Hokkaido 667.0x 98.57 99.92 0 100 0.28 GCF_021406685.1 JAEMBL01 1909 1972 1972 11 4 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406705.1 HMT-619 TV14 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis TV14 113 2395514 48.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/705/GCA_021406705.1_ASM2140670v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134858 ASM2140670v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.277 Japan Illumina NovaSeq Health Sciences University of Hokkaido 625.0x 98.41 99.92 0 100 0.23 GCF_021406705.1 JAEMBM01 2068 2136 2136 11 11 45 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406725.1 HMT-619 Kyudai-3 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis Kyudai-3 116 2424555 48.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/725/GCA_021406725.1_ASM2140672v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134856 ASM2140672v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.237 Japan Illumina NovaSeq Health Sciences University of Hokkaido 708.0x 98.5 99.92 0 99.99 0.33 GCF_021406725.1 JAEMBO01 2091 2157 2157 11 7 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406735.1 HMT-619 Kyudai-4 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis Kyudai-4 107 2247019 48.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/735/GCA_021406735.1_ASM2140673v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134857 ASM2140673v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.257 Japan Illumina NovaSeq Health Sciences University of Hokkaido 792.0x 98.52 99.92 0 99.99 0.27 GCF_021406735.1 JAEMBN01 1906 1973 1973 10 9 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406745.1 HMT-619 B42 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis B42 89 2282399 48.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/745/GCA_021406745.1_ASM2140674v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134860 ASM2140674v1 Scaffold ABySS v. 2.2.4 2020-12-22T02:53:09.313 Japan Illumina NovaSeq Health Sciences University of Hokkaido 875.0x 98.39 99.92 0 100 0.3 GCF_021406745.1 JAEMBK01 1951 2012 2012 11 3 46 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406785.1 HMT-619 1436 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 1436 110 2331307 48.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/785/GCA_021406785.1_ASM2140678v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134854 ASM2140678v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.203 Japan Illumina NovaSeq Health Sciences University of Hokkaido 792.0x 98.5 99.92 0 100 0.32 GCF_021406785.1 JAEMBQ01 2005 2067 2067 11 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406795.1 HMT-619 D83T3 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis D83T3 134 2440602 48.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/795/GCA_021406795.1_ASM2140679v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134855 ASM2140679v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.220 Japan Illumina NovaSeq Health Sciences University of Hokkaido 750.0x 98.46 99.92 0 99.99 0.06 GCF_021406795.1 JAEMBP01 2116 2180 2180 11 5 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021406845.1 HMT-619 222 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 222 90 2333098 48.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/845/GCA_021406845.1_ASM2140684v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA687123 837 SAMN17134853 ASM2140684v1 Contig ABySS v. 2.2.4 2020-12-22T02:53:09.173 Japan Illumina NovaSeq Health Sciences University of Hokkaido 667.0x 98.58 99.92 0.31 100 0.43 GCF_021406845.1 JAEMBR01 1991 2053 2053 11 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_021442105.1 HMT-120 BC5211 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus BC5211 1 2580024 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/442/105/GCA_021442105.1_ASM2144210v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA787814 1283 SAMN23848894 ASM2144210v1 Complete Genome Unicycler v. v0.4.7 2021-12-10T10:09:03.150 not collected missing Illumina NovaSeq Northwest A&F Universit 85.8x 99.41 99.62 0.19 99.98 0.08 GCF_021442105.1 2446 2624 2624 95 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_021443685.1 HMT-690 MAG39 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum MAG39 33 2954775 yes 36.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/443/685/GCA_021443685.1_ASM2144368v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA563062 859 SAMN15049497 ASM2144368v1 Scaffold IDBA_UD v. Version 1.1.1 2020-05-28T18:02:06.696 Brazil: Tatui Cecum and rectal contents from Capybaras Illumina HiSeq Brazilian Center for Research in Energy and Materials (CNPEM) 89.1x 98.89 100 0 100 1.21 GCF_021443685.1 JABUTM01 2742 2774 2774 18 0 13 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_021460135.1 HMT-799 MIN-198 Named Cultivated Vaginal (Abundance: Medium) HMT-799 Ureaplasma parvum MIN-198 1 726862 25.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/460/135/GCA_021460135.1_ASM2146013v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum PRJNA769286 134821 SAMN22108515 ASM2146013v1 Complete Genome unicycler v. v0.4.9 2021-10-07T09:35:03.717 United Kingdom Illumina MiSeq, Oxford Nanopore MiniION Cardiff University 100.0x 99.48 99.05 0 97.88 0.04 GCF_021460135.1 1213 1254 1254 4 6 30 1 Ureaplasma_parvum_homd_HMT_799 GCA_021460215.1 HMT-632 MIN-132 Named Cultivated Vaginal (Abundance: Medium) HMT-632 Metamycoplasma hominis MIN-132 1 708710 27.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/460/215/GCA_021460215.1_ASM2146021v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma hominis PRJNA769286 2098 SAMN22108508 ASM2146021v1 Complete Genome unicycler v. v0.4.9 2021-10-07T09:35:03.593 United Kingdom Illumina MiSeq, Oxford Nanopore MiniION Cardiff University 100.0x 98.03 81.56 0.75 99.52 0.01 GCF_021460215.1 1163 1207 1207 5 4 34 1 Metamycoplasma_hominis_homd_HMT_632 GCA_021460765.1 HMT-767 MIN-085 Named Cultivated Oral (Abundance: Scarce) HMT-767 Streptococcus sinensis MIN-085 14 2206735 41.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/460/765/GCA_021460765.1_ASM2146076v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sinensis PRJNA769286 176090 SAMN22108546 ASM2146076v1 Contig unicycler v. v0.4.9 2021-10-07T09:35:04.243 United Kingdom Illumina MiSeq; Oxford Nanopore MinION Cardiff University 100.0x 96.67 99.63 0 100 0.16 GCF_021460765.1 JAJBHU01 2062 2164 2164 38 9 54 1 Streptococcus_sinensis_homd_HMT_767 GCA_021491935.1 HMT-282 WCO-9 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-282 Acinetobacter junii WCO-9 1 3193903 38.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/491/935/GCA_021491935.1_ASM2149193v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter junii PRJNA795860 40215 SAMN24782617 ASM2149193v1 Complete Genome Canu v. 1.5 2022-01-10T01:59:02.577 China: Sichuan, Mianyang Oil-Contaminated Soil Oxford Nanopore Southwest University of Science and Technology 264.0x 97.64 100 0.27 100 0.19 GCF_021491935.1 2925 3066 3066 48 18 74 1 Acinetobacter_junii_homd_HMT_282 GCA_021496015.1 HMT-601 44 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 44 3 2401799 32.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/496/015/GCA_021496015.1_ASM2149601v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721841 1282 SAMN18740294 ASM2149601v1 Complete Genome MaSuRCA v. 3.4.1; Unicycler v. 0.4.8 2021-04-14T04:57:07.093 France Illumina HiSeq; Oxford Nanopore MinION LOreal 2071.0x 99.65 99.81 0 99.99 0 GCF_021496015.1 2193 2348 2348 75 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_021496075.1 HMT-601 45A6 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 45A6 2 2447700 32.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/496/075/GCA_021496075.1_ASM2149607v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721843 1282 SAMN18740296 ASM2149607v1 Complete Genome MaSuRCA v. 3.4.1; Unicycler v. 0.4.8 2021-04-14T04:57:07.113 France Illumina HiSeq; Oxford Nanopore MinION LOreal 3586.0x 99.58 99.81 0 99.98 0.02 GCF_021496075.1 2228 2387 2387 79 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_021496295.1 HMT-297 AJ312 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-297 Acinetobacter johnsonii AJ312 1 3343033 41.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/496/295/GCA_021496295.1_ASM2149629v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter johnsonii PRJNA576279 40214 SAMN12989376 ASM2149629v1 Complete Genome SPAdes v. December-2018 2019-10-07T21:31:04.040 China: Xian urban river water PacBio RSII majorbio 407.7x 95.96 100 0 100 1.14 GCF_021496295.1 3156 3283 3283 16 21 89 1 Acinetobacter_johnsonii_homd_HMT_297 GCA_021496365.1 HMT-297 AJ413 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-297 Acinetobacter johnsonii AJ413 5 3784505 41.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/496/365/GCA_021496365.1_ASM2149636v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter johnsonii PRJNA576279 40214 SAMN12989377 ASM2149636v1 Complete Genome SPAdes v. December-2018 2019-10-07T21:31:04.057 China: Xian urban river water PacBio RSII majorbio 100.0x 95.83 100 0.27 100 0.35 GCF_021496365.1 3558 3692 3692 24 21 88 1 Acinetobacter_johnsonii_homd_HMT_297 GCA_021496585.1 HMT-530 HKGB4 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes HKGB4 1 2452489 60.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/496/585/GCA_021496585.1_ASM2149658v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA638345 1747 SAMN15293942 ASM2149658v1 Chromosome Unicycler v. v0.4.8 2020-06-17T03:43:11.330 India: New Delhi MAMC Hospital, New Delhi Illumina HiSeq CSIR-Institute of Genomics and Integrative Biology (IGIB) 297.0x 99.8 100 0 100 0.14 GCF_021496585.1 2257 2328 2328 20 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_021496605.1 HMT-530 HKGB3 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes HKGB3 1 2478156 60.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/496/605/GCA_021496605.1_ASM2149660v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA638345 1747 SAMN15293941 ASM2149660v1 Chromosome Unicycler v. v0.4.8 2020-06-17T03:43:11.313 India: New Delhi MAMC Hospital, New Delhi Illumina HiSeq CSIR-Institute of Genomics and Integrative Biology (IGIB) 302.0x 99.52 99.43 0.03 99.99 0.17 GCF_021496605.1 2298 2370 2370 21 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_021496625.1 HMT-530 HKGB2 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes HKGB2 1 2477993 60.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/496/625/GCA_021496625.1_ASM2149662v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA638345 1747 SAMN15293940 ASM2149662v1 Chromosome Unicycler v. v0.4.8 2020-06-17T03:43:11.297 India: New Delhi MAMC Hospital, New Delhi Illumina HiSeq CSIR-Institute of Genomics and Integrative Biology (IGIB) 370.0x 99.96 98.94 0.03 100 0.13 GCF_021496625.1 2299 2370 2370 20 3 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_021497065.1 HMT-127 S34-1 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis S34-1 3 2254542 31.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/497/065/GCA_021497065.1_ASM2149706v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA545381 1290 SAMN11890469 ASM2149706v1 Complete Genome HGAP v. 2.0 2019-05-29T23:20:04.026 China: Shanghai PacBio Renji Hospital, School o 20.0x 99.01 99.33 1.2 99.98 0.14 GCF_021497065.1 2150 2298 2298 65 19 63 1 Staphylococcus_hominis_homd_HMT_127 GCA_021497885.1 HMT-071 SOD Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SOD 1 1938840 41.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/497/885/GCA_021497885.1_ASM2149788v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BQ PRJNA592835 1303 SAMN13440953 ASM2149788v1 Complete Genome HGAP v. 2.3 2019-12-01T23:31:03.703 China: Shandong human oral cavity PacBio Shandong University 120.0x 93.71 99.47 0.2 99.95 0.08 GCF_021497885.1 1858 2016 2016 84 12 61 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_021497885.1 HMT-071 SOD Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SOD 1 1938840 41.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/497/885/GCA_021497885.1_ASM2149788v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BQ PRJNA592835 1303 SAMN13440953 ASM2149788v1 Complete Genome HGAP v. 2.3 2019-12-01T23:31:03.703 China: Shandong human oral cavity PacBio Shandong University 120.0x 93.71 99.47 0.2 99.95 0.08 GCF_021497885.1 1858 2016 2016 84 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_021497945.1 HMT-071 SOT Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SOT 1 1944085 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/497/945/GCA_021497945.1_ASM2149794v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BR PRJNA592835 1303 SAMN13440952 ASM2149794v1 Complete Genome HGAP v. 2.3 2019-12-01T23:31:03.687 China: Shandong human oral cavity PacBio Shandong University 120.0x 92.63 99.44 0.2 99.92 0.21 GCF_021497945.1 1845 1957 1957 38 12 61 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_021497945.1 HMT-071 SOT Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus SOT 1 1944085 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/497/945/GCA_021497945.1_ASM2149794v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BR PRJNA592835 1303 SAMN13440952 ASM2149794v1 Complete Genome HGAP v. 2.3 2019-12-01T23:31:03.687 China: Shandong human oral cavity PacBio Shandong University 120.0x 92.63 99.44 0.2 99.92 0.21 GCF_021497945.1 1845 1957 1957 38 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_021497985.1 HMT-076 Cap 100.1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri Cap 100.1 4 2474749 32.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/497/985/GCA_021497985.1_ASM2149798v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA609981 1292 SAMN14279050 ASM2149798v1 Complete Genome Unicycler v. 3 2020-03-04T07:48:07.236 Brazil:Vicosa dairy goats with persistent mastitis before therapy with enrofloxacin Illumina HiSeq UFMG 316.0x 99.64 99.73 0 99.99 0.03 GCF_021497985.1 2372 2495 2495 48 12 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_021513055.1 HMT-601 52B Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 52B 4 2532862 32.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/513/055/GCA_021513055.1_ASM2151305v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721845 1282 SAMN18740297 ASM2151305v1 Complete Genome MaSuRCA v. 3.4.1; Unicycler v. 0.4.8 2021-04-14T04:57:07.123 France Illumina HiSeq; Oxford Nanopore MinION LOreal 3309.0x 99.56 99.81 0.59 99.99 0.02 GCF_021513055.1 2309 2480 2480 91 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_021513075.1 HMT-601 50D Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 50D 4 2494613 32.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/513/075/GCA_021513075.1_ASM2151307v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721839 1282 SAMN18740292 ASM2151307v1 Complete Genome MaSuRCA v. 3.4.1; Unicycler v. 0.4.8 2021-04-14T04:57:07.067 France Illumina HiSeq; Oxford Nanopore MinION LOreal 2236.0x 99.55 99.67 0.06 99.98 0.17 GCF_021513075.1 2308 2471 2471 78 22 62 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_021513115.1 HMT-601 BC1190 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis BC1190 5 2521740 32.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/513/115/GCA_021513115.1_ASM2151311v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA721847 1282 SAMN18740299 ASM2151311v1 Complete Genome MaSuRCA v. 3.4.1; Unicycler v. 0.4.8 2021-04-14T04:57:07.153 France Illumina HiSeq; Oxford Nanopore MinION LOreal 1604.0x 99.55 99.67 0.06 99.99 0.25 GCF_021513115.1 2342 2501 2501 79 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_021531445.1 HMT-684 An892 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-684 Mitsuokella multacida An892 43 2357375 58.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/531/445/GCA_021531445.1_ASM2153144v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;s__Mitsuokella multacida PRJNA658263 52226 SAMN15872559 ASM2153144v1 Contig SPAdes v. 3.11.1 2020-08-21T11:32:06.017 not applicable Illumina NextSeq Veterinary Research Institute 227.0x 96.74 100 0.08 99.98 0.01 GCF_021531445.1 JADYTW01 2058 2241 2241 104 6 72 1 Mitsuokella_multacida_homd_HMT_684 GCA_021532155.1 HMT-787 ET44 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-787 Bacteroides pyogenes ET44 132 3309443 45.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/532/155/GCA_021532155.1_ASM2153215v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes PRJNA658263 310300 SAMN15872580 ASM2153215v1 Contig SPAdes v. 3.11.1 2020-08-21T11:32:06.660 not applicable Illumina NextSeq Veterinary Research Institute 74.0x 98.85 99.25 0.19 99.79 0 GCF_021532155.1 JADYUW01 2736 2870 2870 67 5 61 1 Bacteroides_pyogenes_homd_HMT_787 GCA_021595565.1 HMT-073 GS001 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis GS001 10 1944550 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/595/565/GCA_021595565.1_ASM2159556v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA658208 2766953 SAMN15861126 ASM2159556v1 Scaffold SPAdes v. 3.12 2020-08-19T23:34:04.930 USA: Rhode Island blood Illumina HiSeq Rhode Island Hospital 500.0x 100 0.17 99.97 0 GCF_021595565.1 JACSYJ01 1896 1990 1990 39 5 49 1 Streptococcus_australis_homd_HMT_073 GCA_021600285.1 HMT-754 ATCC 14277 Named Cultivated Oral (Abundance: Medium) HMT-754 Metamycoplasma salivarium ATCC 14277 7 718941 26.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/600/285/GCA_021600285.1_ASM2160028v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma salivarium PRJDB11649 2124 SAMD00322329 ASM2160028v1 Contig Unicycler v. 0.4.8 2021-12-02T01:00:58.113 missing DNBSEQ-G400RS FAST Iwate Medical University 330.0x 98.91 99.25 0 96.27 0.3 GCF_021600285.1 BPLV01 1286 1325 1325 2 3 33 1 Metamycoplasma_salivarium_homd_HMT_754 GCA_021600305.1 HMT-754 ATCC 23557 Named Cultivated Oral (Abundance: Medium) HMT-754 Metamycoplasma salivarium ATCC 23557 6 718986 26.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/600/305/GCA_021600305.1_ASM2160030v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma salivarium PRJDB11649 2124 SAMD00322330 ASM2160030v1 Contig Unicycler v. 0.4.8 2021-12-02T01:00:58.130 missing DNBSEQ-G400RS FAST Iwate Medical University 310.0x 99.01 100 0 96.13 0.05 GCF_021600305.1 BPLW01 1291 1330 1330 2 3 33 1 Metamycoplasma_salivarium_homd_HMT_754 GCA_021600325.1 HMT-754 ATCC 33130 Named Cultivated Oral (Abundance: Medium) HMT-754 Metamycoplasma salivarium ATCC 33130 9 736914 26.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/600/325/GCA_021600325.1_ASM2160032v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma salivarium PRJDB11649 2124 SAMD00322331 ASM2160032v1 Contig Unicycler v. 0.4.8 2021-12-02T01:00:58.143 missing DNBSEQ-G400RS FAST Iwate Medical University 270.0x 98.96 100 0.5 96.12 0.05 GCF_021600325.1 BPLX01 1323 1362 1362 2 3 33 1 Metamycoplasma_salivarium_homd_HMT_754 GCA_021728465.1 HMT-076 8SE Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri 8SE 27 2556753 32.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/728/465/GCA_021728465.1_ASM2172846v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA767482 1292 SAMN25227150 ASM2172846v1 Contig Velvet v. v. v1.2.10 2022-01-24T15:07:04.990 Sudan Table surface Illumina King Abdulaziz University 424.0x 96.03 99.73 0.1 100 0.12 GCF_021728465.1 JAKKDY01 2452 2564 2564 52 4 55 1 Staphylococcus_warneri_homd_HMT_076 GCA_021764795.1 HMT-036 SZY H68 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 SZY H68 1 1902918 38.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/764/795/GCA_021764795.1_ASM2176479v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJNA800204 2582921 SAMN25235948 ASM2176479v1 Complete Genome HGAP v. 1.3 2022-01-25T03:38:02.996 China:Guangdong sputum specimens PacBio The Second Clinic Medical College 120.0x 95.94 99.49 0.08 100 0.1 1751 1858 1858 29 19 58 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_021849105.1 HMT-216 SKS3.bin6 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-216 Acidovorax temperans SKS3.bin6 94 3758010 yes 63.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/849/105/GCA_021849105.1_ASM2184910v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax;s__Acidovorax temperans PRJNA666025 1977087 SAMN20843846 ASM2184910v1 Scaffold SPAdes v. 3.4.1 2021-08-18T03:59:08.710 China: Shuikoushan Lead-Zinc M acid mine drainage sediment Illumina MiSeq Sun Yat-sen University, Guangzhou 50.0x 95.39 0 98.72 1.18 JAJZTI01 3380 3449 3449 23 1 44 1 Acidovorax_temperans_homd_HMT_216 GCA_021893145.1 HMT-677 SM11 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM11 30 1858685 40.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/893/145/GCA_021893145.1_ASM2189314v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CI PRJNA782624 28037 SAMN24466632 ASM2189314v1 Contig SPAdes v. 3.13.0 2021-12-28T14:18:03.907 Germany sputum Illumina MiSeq University Hospital Dresden 58.0x 95.12 99.82 0.2 99.99 0 GCF_021893145.1 JAJUWQ01 1736 1840 1840 55 5 43 1 Streptococcus_mitis_homd_HMT_677 GCA_022014035.1 HMT-466 66-3 Named Cultivated Oral (Abundance: Medium) HMT-466 Alloprevotella tannerae 66-3 85 2593442 46.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/014/035/GCA_022014035.1_ASM2201403v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella tannerae PRJNA689928 76122 SAMN17221977 ASM2201403v1 Contig SPAdes v. 3.14.1 2021-01-06T00:53:06.000 Japan Illumina HiSeq Health Sciences University of Hokkaido 400.0x 96.63 98.5 0 99.97 0.02 GCF_022014035.1 JAENXY01 2162 2220 2220 4 3 50 1 Alloprevotella_tannerae_homd_HMT_466 GCA_022014045.1 HMT-466 51-1 Named Cultivated Oral (Abundance: Medium) HMT-466 Alloprevotella tannerae 51-1 120 2684346 46.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/014/045/GCA_022014045.1_ASM2201404v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella tannerae PRJNA689928 76122 SAMN17221976 ASM2201404v1 Contig SPAdes v. 3.14.1 2021-01-06T00:53:05.980 Japan Illumina HiSeq Health Sciences University of Hokkaido 400.0x 96.52 98.5 0 99.99 0.02 GCF_022014045.1 JAENXZ01 2230 2288 2288 4 3 50 1 Alloprevotella_tannerae_homd_HMT_466 GCA_022014095.1 HMT-466 49-1 Named Cultivated Oral (Abundance: Medium) HMT-466 Alloprevotella tannerae 49-1 61 2529871 46.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/014/095/GCA_022014095.1_ASM2201409v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella tannerae PRJNA689928 76122 SAMN17221975 ASM2201409v1 Contig SPAdes v. 3.14.1 2021-01-06T00:53:05.957 Japan Illumina HiSeq Health Sciences University of Hokkaido 400.0x 96.64 98.38 0 99.99 0.05 GCF_022014095.1 JAENYA01 2100 2159 2159 4 4 50 1 Alloprevotella_tannerae_homd_HMT_466 GCA_022014115.1 HMT-466 45-2 Named Cultivated Oral (Abundance: Medium) HMT-466 Alloprevotella tannerae 45-2 78 2497228 46.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/014/115/GCA_022014115.1_ASM2201411v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella tannerae PRJNA689928 76122 SAMN17221974 ASM2201411v1 Contig SPAdes v. 3.14.1 2021-01-06T00:53:05.893 Japan Illumina HiSeq Health Sciences University of Hokkaido 400.0x 96.78 98.38 0 99.97 0.01 GCF_022014115.1 JAENYB01 2062 2126 2126 8 4 51 1 Alloprevotella_tannerae_homd_HMT_466 GCA_022014535.1 HMT-019 C781 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens C781 36 2437042 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/014/535/GCA_022014535.1_ASM2201453v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA745058 38284 SAMN20132587 ASM2201453v1 Contig Unicycler v. 0.4.8 2021-07-09T04:54:05.263 Australia: Adelaide nasal tract Illumina NextSeq University of Adelaide 102.3x 96.76 99.78 0 100 0.03 GCF_022014535.1 JAHWQZ01 2239 2302 2302 7 3 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_022014555.1 HMT-019 C787 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens C787 61 2511955 59.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/014/555/GCA_022014555.1_ASM2201455v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA745058 38284 SAMN20132588 ASM2201455v1 Contig Unicycler v. 0.4.8 2021-07-09T04:54:05.280 Australia: Adelaide nasal tract Illumina NextSeq University of Adelaide 129.7x 96.93 99.78 0 100 0.02 GCF_022014555.1 JAHWQY01 2309 2371 2371 7 3 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_022014575.1 HMT-019 C779 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens C779 33 2490552 59.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/014/575/GCA_022014575.1_ASM2201457v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA745058 38284 SAMN20132586 ASM2201457v1 Contig Unicycler v. 0.4.8 2021-07-09T04:54:05.243 Australia: Adelaide nasal tract Illumina NextSeq University of Adelaide 107.8x 96.92 99.56 0 100 0.04 GCF_022014575.1 JAHWRA01 2325 2388 2388 7 3 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_022068285.1 HMT-734 TVO_1901927 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1901927 1 2118571 39.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/068/285/GCA_022068285.1_ASM2206828v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734516 ASM2206828v1 Complete Genome HGAP v. 4 2019-01-11T15:47:08.890 Netherlands: Nijmegen blood PacBio Sequel Boston College 414.0x 98.78 99.6 0.21 100 0.27 GCF_022068285.1 2107 2255 2255 77 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022068525.1 HMT-734 TVO_1901925 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1901925 1 2000117 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/068/525/GCA_022068525.1_ASM2206852v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734514 ASM2206852v1 Complete Genome HGAP v. 4 2019-01-11T15:47:08.857 Netherlands: Nijmegen blood PacBio Sequel Boston College 509.0x 98.73 99.42 0.2 100 0.2 GCF_022068525.1 1964 2109 2109 74 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022069005.1 HMT-734 TVO_1901948 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1901948 1 2001615 39.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/069/005/GCA_022069005.1_ASM2206900v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734533 ASM2206900v1 Complete Genome HGAP v. 4 2019-01-11T15:47:09.173 Netherlands: Nijmegen blood PacBio Sequel Boston College 407.0x 98.73 99.42 0.2 100 0.09 GCF_022069005.1 1970 2107 2107 66 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022069325.1 HMT-734 TVO_1901945 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1901945 1 2098679 39.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/069/325/GCA_022069325.1_ASM2206932v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734530 ASM2206932v1 Complete Genome HGAP v. 4 2019-01-11T15:47:09.127 Netherlands: Nijmegen blood PacBio Sequel Boston College 279.0x 98.64 99.82 0.2 100 0.53 GCF_022069325.1 2067 2211 2211 72 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022069485.1 HMT-734 TVO_1901941 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1901941 1 2050463 39.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/069/485/GCA_022069485.1_ASM2206948v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734528 ASM2206948v1 Complete Genome HGAP v. 4 2019-01-11T15:47:09.093 Netherlands: Nijmegen blood PacBio Sequel Boston College 388.0x 98.67 99.18 0.21 100 0.03 GCF_022069485.1 2005 2151 2151 75 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022069505.1 HMT-734 TVO_1901940 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1901940 1 2052119 39.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/069/505/GCA_022069505.1_ASM2206950v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734527 ASM2206950v1 Complete Genome HGAP v. 4 2019-01-11T15:47:09.077 Netherlands: Nijmegen blood PacBio Sequel Boston College 227.0x 98.67 99.18 0.21 100 0.03 GCF_022069505.1 2010 2156 2156 75 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022069545.1 HMT-734 TVO_1901939 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1901939 1 2075570 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/069/545/GCA_022069545.1_ASM2206954v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734526 ASM2206954v1 Complete Genome HGAP v. 4 2019-01-11T15:47:09.060 Netherlands: Nijmegen blood PacBio Sequel Boston College 346.0x 98.9 99.6 0.21 100 0.06 GCF_022069545.1 2081 2230 2230 78 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022070465.1 HMT-734 TVO_1901920 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1901920 1 2084495 39.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/070/465/GCA_022070465.1_ASM2207046v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734509 ASM2207046v1 Complete Genome HGAP v. 4 2019-01-11T15:47:08.767 Netherlands: Nijmegen blood PacBio Sequel Boston College 434.0x 98.72 99.6 0.77 100 0.1 GCF_022070465.1 2098 2244 2244 74 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022070485.1 HMT-734 TVO_1902277 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1902277 1 2108520 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/070/485/GCA_022070485.1_ASM2207048v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734540 ASM2207048v1 Complete Genome HGAP v. 4 2019-01-11T15:47:09.307 USA: Georgia blood PacBio Sequel Boston College 436.0x 98.64 99.82 0.2 100 0.52 GCF_022070485.1 2082 2228 2228 74 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022070545.1 HMT-734 TVO_1902276 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1902276 1 2150845 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/070/545/GCA_022070545.1_ASM2207054v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734539 ASM2207054v1 Complete Genome HGAP v. 4 2019-01-11T15:47:09.287 USA: Connecticut blood PacBio Sequel Boston College 316.0x 98.62 99.82 0.2 100 0.56 GCF_022070545.1 2134 2286 2286 80 12 59 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022070565.1 HMT-734 TVO_1902282 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1902282 1 2103577 39.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/070/565/GCA_022070565.1_ASM2207056v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734538 ASM2207056v1 Complete Genome HGAP v. 4 2019-01-11T15:47:09.267 Sweden: Stockholm nasopharynx PacBio Sequel Boston College 658.0x 98.74 99.6 0.21 100 0.15 GCF_022070565.1 2081 2238 2238 86 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022075545.1 HMT-734 TVO_1901936 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1901936 1 2139846 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/075/545/GCA_022075545.1_ASM2207554v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734563 ASM2207554v1 Complete Genome CANU v. 1.8 2019-01-11T15:53:04.510 Netherlands: Nijmegen blood PacBio Sequel Boston College 205.0x 98.71 99.42 0.2 100 0.5 GCF_022075545.1 2111 2265 2265 83 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022075645.1 HMT-734 TVO_1901944 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae TVO_1901944 1 2071654 39.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/075/645/GCA_022075645.1_ASM2207564v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA514780 1313 SAMN10734565 ASM2207564v1 Complete Genome HGAP v. 4 2019-01-11T15:53:04.550 Netherlands: Nijmegen blood PacBio Sequel Boston College 388.0x 98.65 99.82 0.2 100 0.51 GCF_022075645.1 2039 2177 2177 67 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022136765.1 HMT-622 DFI.4.55 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii DFI.4.55 60 2206294 40.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/136/765/GCA_022136765.1_NA d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA792599 1302 SAMN24726001 NA Contig SPAdes v. v3.14.0 2022-01-07T17:34:05.590 USA:Chicago human fecal sample Illumina MiSeq University of Chicago 100.0x 95.52 100 0.66 100 0.03 GCF_022136765.1 JAKNFD01 2114 2185 2185 28 3 39 1 Streptococcus_gordonii_homd_HMT_622 GCA_022136825.1 HMT-622 DFI.4.19 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii DFI.4.19 168 2274423 40.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/136/825/GCA_022136825.1_NA d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA792599 1302 SAMN24725998 NA Contig SPAdes v. v3.14.0 2022-01-07T17:34:05.543 USA:Chicago human fecal sample Illumina MiSeq University of Chicago 100.0x 95.43 100 0.12 100 0.05 GCF_022136825.1 JAKNFA01 2123 2200 2200 27 6 43 1 Streptococcus_gordonii_homd_HMT_622 GCA_022137105.1 HMT-524 DFI.2.97 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica DFI.2.97 63 2126203 38.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/137/105/GCA_022137105.1_NA d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA792599 39777 SAMN24725989 NA Contig SPAdes v. v3.14.0 2022-01-07T17:34:05.360 USA:Chicago human fecal sample Illumina MiSeq University of Chicago 100.0x 97.08 100 0 100 0.17 GCF_022137105.1 JAKNER01 1978 2039 2039 19 3 38 1 Veillonella_atypica_homd_HMT_524 GCA_022212925.1 HMT-604 119-2 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-604 Enterococcus faecalis 119-2 2 2913888 37.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/212/925/GCA_022212925.1_ASM2221292v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis PRJNA800580 1351 SAMN25249818 ASM2221292v1 Complete Genome Unicycler v. v 0.4.7 2022-01-25T23:31:04.987 USA: Texas, Dallas fecal sample Illumina NextSeq University of Texas at Dallas 539.0x 99.12 99.63 0 100 0.21 GCF_022212925.1 2713 2866 2866 79 12 61 1 Enterococcus_faecalis_homd_HMT_604 GCA_022221305.1 HMT-824 AF039 Named Cultivated Pathogen (Abundance: Scarce) HMT-824 Bacillus anthracis AF039 3 5486304 35.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/221/305/GCA_022221305.1_ASM2222130v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis PRJNA695105 1392 SAMN18241463 ASM2222130v1 Complete Genome flye; unicycler v. 2.7; 0.4.8 2021-03-10T10:28:07.486 Zimbabwe soil Illumina MiSeq; Oxford Nanopore MinION Bundeswehr 92.0x 99.92 99.23 0.15 99.99 0.12 GCF_022221305.1 5729 5981 5981 125 30 96 1 Bacillus_anthracis_homd_HMT_824 GCA_022221345.1 HMT-824 Vollum Named Cultivated Pathogen (Abundance: Scarce) HMT-824 Bacillus anthracis Vollum 3 5506524 35.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/221/345/GCA_022221345.1_ASM2222134v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis PRJNA695105 1392 SAMN18241461 ASM2222134v1 Complete Genome flye; unicycler v. 2.7; 0.4.8 2021-03-10T10:28:07.460 USA missing Illumina MiSeq; Oxford Nanopore GridION Bundeswehr 97.0x 99.99 99.23 0.15 100 0.13 GCF_022221345.1 5735 5992 5992 126 33 97 1 Bacillus_anthracis_homd_HMT_824 GCA_022240605.1 HMT-073 DFI.7.26 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis DFI.7.26 82 2000983 41.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/240/605/GCA_022240605.1_NA d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA792599 2916965 SAMN24726055 NA Contig SPAdes v. v3.14.0 2022-01-07T17:34:06.430 USA:Chicago human fecal sample Illumina MiSeq University of Chicago 100.0x 100 0.17 99.97 0 GCF_022240605.1 JAKOGN01 1912 1994 1994 39 3 39 1 Streptococcus_australis_homd_HMT_073 GCA_022291075.1 HMT-076 Cap 10.1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri Cap 10.1 14 2495971 32.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/291/075/GCA_022291075.1_ASM2229107v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA609981 1292 SAMN14271047 ASM2229107v1 Scaffold Unicycler v. 3 2020-03-03T15:46:05.196 Brazil:Vicosa dairy goats with persistent mastitis before therapy with enrofloxacin Illumina HiSeq UFMG 308.0x 99.64 99.73 0 99.99 0.02 GCF_022291075.1 JAANHI01 2410 2525 2525 49 3 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_022291085.1 HMT-076 Cap 9.1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri Cap 9.1 12 2484974 32.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/291/085/GCA_022291085.1_ASM2229108v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA609981 1292 SAMN14269163 ASM2229108v1 Scaffold Unicycler v. 3 2020-03-03T12:38:11.293 Brazil:Vicosa Illumina HiSeq UFMG 374.0x 99.64 99.73 0 99.99 0.02 GCF_022291085.1 JAATOG01 2397 2510 2510 47 3 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_022291115.1 HMT-076 Cap 9.2 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri Cap 9.2 21 2578828 32.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/291/115/GCA_022291115.1_ASM2229111v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA609981 1292 SAMN14270843 ASM2229111v1 Scaffold Unicycler v. 3 2020-03-03T14:58:05.140 Brazil:Vicosa dairy goats with persistent mastitis after therapy with enrofloxacin Illumina HiSeq UFMG 319.0x 99.64 99.73 0 99.99 0.03 GCF_022291115.1 JAANHJ01 2489 2607 2607 52 3 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_022291155.1 HMT-076 Cap 10.2 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri Cap 10.2 14 2496149 32.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/291/155/GCA_022291155.1_ASM2229115v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA609981 1292 SAMN14278917 ASM2229115v1 Scaffold Unicycler v. 3 2020-03-04T07:38:08.370 Brazil:Vicosa dairy goats with persistent mastitis after therapy with enrofloxacin Illumina HiSeq UFMG 222.0x 99.64 99.73 0 99.99 0.02 GCF_022291155.1 JAANHK01 2413 2528 2528 49 3 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_022291175.1 HMT-076 Cap 100.2 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri Cap 100.2 14 2496383 32.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/291/175/GCA_022291175.1_ASM2229117v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA609981 1292 SAMN14279051 ASM2229117v1 Scaffold Unicycler v. 3 2020-03-04T07:52:08.033 Brazil:Vicosa dairy goats with persistent mastitis after therapy with enrofloxacin Illumina HiSeq UFMG 263.0x 99.64 99.73 0 99.99 0.02 GCF_022291175.1 JAANHL01 2413 2528 2528 49 3 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_022291195.1 HMT-076 Cap 101.2 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri Cap 101.2 15 2499240 32.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/291/195/GCA_022291195.1_ASM2229119v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA609981 1292 SAMN14279053 ASM2229119v1 Scaffold Unicycler v. 3 2020-03-04T08:03:05.880 Brazil:Vicosa dairy goats with persistent mastitis after therapy with enrofloxacin Illumina HiSeq UFMG 337.0x 99.64 99.73 0 99.99 0.02 GCF_022291195.1 JAANHN01 2414 2529 2529 49 3 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_022291215.1 HMT-076 Cap 101.1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri Cap 101.1 14 2496160 32.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/291/215/GCA_022291215.1_ASM2229121v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA609981 1292 SAMN14279052 ASM2229121v1 Scaffold Unicycler v. 3 2020-03-04T07:57:06.360 Brazil:Vicosa dairy goats with persistent mastitis before therapy with enrofloxacin Illumina HiSeq UFMG 233.0x 99.64 99.73 0 99.99 0.02 GCF_022291215.1 JAANHM01 2410 2525 2525 49 3 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_022318405.1 HMT-734 CH2241 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae CH2241 1 2062088 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/318/405/GCA_022318405.1_ASM2231840v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA437292 1313 SAMN08647361 ASM2231840v1 Complete Genome Unicycler v. v0.4.8 2018-03-07T11:36:09.996 USA nasopharyngeal Oxford Nanopore MiniION Harvard University 52.0x 98.81 99.82 0.2 100 0.15 GCF_022318405.1 2027 2170 2170 72 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022318425.1 HMT-734 LE4448 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae LE4448 1 2003723 39.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/318/425/GCA_022318425.1_ASM2231842v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA437292 1313 SAMN08647548 ASM2231842v1 Complete Genome Trycycler v. v0.5.3 2018-03-07T11:36:13.220 USA nasopharyngeal Oxford Nanopore MiniION Harvard University 52.0x 98.82 99.82 0.2 100 0.11 GCF_022318425.1 1988 2129 2129 70 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022318505.1 HMT-734 NP7536 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae NP7536 1 2062504 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/318/505/GCA_022318505.1_ASM2231850v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA437292 1313 SAMN08647838 ASM2231850v1 Complete Genome Unicycler v. v0.4.8 2018-03-07T11:36:18.063 USA nasopharyngeal Oxford Nanopore MiniION Harvard University 52.0x 98.81 99.82 0.2 100 0.14 GCF_022318505.1 2030 2174 2174 73 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_022340045.1 HMT-202 FnS0431 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum FnS0431 44 2288477 26.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/340/045/GCA_022340045.1_ASM2234004v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA755318 851 SAMN20819809 ASM2234004v1 Contig spades v. 3.14.1 2021-08-16T20:19:46.643 missing tissue Illumina Resphera Biosciences 40.0x 92.36 100 0 100 0.25 GCF_022340045.1 JAIMZL01 2186 2230 2230 22 0 21 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_022340105.1 HMT-420 Fn173CP Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis Fn173CP 36 2120548 26.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/340/105/GCA_022340105.1_ASM2234010v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA755318 851 SAMN20819807 ASM2234010v1 Contig spades v. 3.14.1 2021-08-16T20:19:46.617 missing tissue Illumina Resphera Biosciences 120.0x 91.72 98.86 0 100 0.02 GCF_022340105.1 JAIMZJ01 1995 2060 2060 20 1 43 1 Fusobacterium_animalis_homd_HMT_420 GCA_022340115.1 HMT-202 Fn3760T Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum Fn3760T 42 2299006 26.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/340/115/GCA_022340115.1_ASM2234011v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA755318 851 SAMN20819808 ASM2234011v1 Contig spades v. 3.14.1 2021-08-16T20:19:46.630 missing tissue Illumina Resphera Biosciences 114.0x 92.34 96.63 0 99.71 0.06 GCF_022340115.1 JAIMZK01 2177 2241 2241 26 0 37 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_022340145.1 HMT-698 Fn10-CTX3 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto Fn10-CTX3 54 2101367 26.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/340/145/GCA_022340145.1_ASM2234014v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA755318 851 SAMN20819805 ASM2234014v1 Contig spades v. 3.14.1 2021-08-16T20:19:46.573 missing tissue Illumina Resphera Biosciences 35.0x 98.86 95.51 0 98.3 0.21 GCF_022340145.1 JAIMZH01 1973 2017 2017 17 2 24 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_022340165.1 HMT-200 Fn146CP Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii Fn146CP 27 2081686 26.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/340/165/GCA_022340165.1_ASM2234016v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA755318 851 SAMN20819806 ASM2234016v1 Contig spades v. 3.14.1 2021-08-16T20:19:46.600 missing tissue Illumina Resphera Biosciences 68.0x 92.5 97.75 0 99.88 0.04 GCF_022340165.1 JAIMZI01 1924 1976 1976 19 0 32 1 Fusobacterium_vincentii_homd_HMT_200 GCA_022341345.1 HMT-833 P17N Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis P17N 33 1936065 41.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/341/345/GCA_022341345.1_ASM2234134v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA688249 480 SAMN17178388 ASM2234134v1 Contig SPAdes v. 3.14.1 2020-12-29T14:35:06.570 Chile: Santiago nasal mucosa Illumina MiSeq Andres Bello University 266.0x 99.22 99.73 0.27 100 0.01 GCF_022341345.1 JAEOBJ01 1783 1840 1840 10 3 43 1 Moraxella_catarrhalis_homd_HMT_833 GCA_022341385.1 HMT-833 P12N Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis P12N 21 1826282 41.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/341/385/GCA_022341385.1_ASM2234138v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA688249 480 SAMN17178386 ASM2234138v1 Contig SPAdes v. 3.14.1 2020-12-29T14:35:06.526 Chile: Santiago nasal mucosa Illumina MiSeq Andres Bello University 266.0x 99.18 99.45 0.27 100 0.01 GCF_022341385.1 JAEOBL01 1649 1704 1704 7 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_022345765.1 HMT-783 CTNIH6 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii CTNIH6 43 2528086 58.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/345/765/GCA_022345765.1_ASM2234576v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA694925 3230066 SAMN17729870 ASM2234576v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.856 USA skin Illumina NovaSeq NHGRI/NIH 86.0x 99.71 1.14 99.99 0.53 GCF_022345765.1 JAKRDR01 2422 2491 2491 11 6 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_022345785.1 HMT-072 ACRQW Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum ACRQW 44 2735460 59.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/345/785/GCA_022345785.1_ASM2234578v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA694925 43770 SAMN17729904 ASM2234578v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.850 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 97.77 99.67 0.47 99.99 1.68 GCF_022345785.1 JAKRDP01 2522 2591 2591 8 6 54 1 Corynebacterium_striatum_homd_HMT_072 GCA_022345795.1 HMT-783 CTNIH27 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii CTNIH27 39 2528625 58.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/345/795/GCA_022345795.1_ASM2234579v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA694925 1979527 SAMN17729871 ASM2234579v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.883 USA skin Illumina NovaSeq NHGRI/NIH 86.0x 96.08 99.71 1.14 99.99 0.58 GCF_022345795.1 JAKRDS01 2425 2494 2494 11 6 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_022345825.1 HMT-062 ACRQU Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-062 Corynebacterium simulans ACRQU 33 2639000 59.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/345/825/GCA_022345825.1_ASM2234582v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium simulans PRJNA694925 146827 SAMN17729902 ASM2234582v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.770 USA skin Illumina NovaSeq NHGRI/NIH 89.0x 99.56 0.23 99.99 0.15 GCF_022345825.1 JAKRDO01 2448 2515 2515 8 3 55 1 Corynebacterium_simulans_homd_HMT_062 GCA_022345865.1 HMT-060 ACRQT Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum ACRQT 23 2322325 55.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/345/865/GCA_022345865.1_ASM2234586v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA694925 37637 SAMN17729901 ASM2234586v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.740 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 98.4 99.67 0 100 0.01 GCF_022345865.1 JAKRDN01 2078 2138 2138 6 6 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_022345885.1 HMT-053 ACRQO Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-053 Corynebacterium minutissimum ACRQO 36 2588109 59.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/345/885/GCA_022345885.1_ASM2234588v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium minutissimum PRJNA694925 38301 SAMN17729897 ASM2234588v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.650 USA skin Illumina NovaSeq NHGRI/NIH 86.0x 97.29 99.78 0.22 99.96 0.03 GCF_022345885.1 JAKRDL01 2404 2469 2469 7 5 51 2 Corynebacterium_minutissimum_homd_HMT_053 GCA_022345925.1 HMT-059 ACRQS Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum ACRQS 33 2525869 56.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/345/925/GCA_022345925.1_ASM2234592v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA694925 43769 SAMN17729900 ASM2234592v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.716 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 97.59 99.22 0 99.99 0.06 GCF_022345925.1 JAKRDM01 2274 2333 2333 6 5 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_022346085.1 HMT-207 ACRQI Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense ACRQI 72 2563029 65.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/085/GCA_022346085.1_ASM2234608v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA694925 2026255 SAMN17729891 ASM2234608v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.510 USA skin Illumina NovaSeq NHGRI/NIH 80.0x 97.25 99.34 0.05 99.98 0.04 GCF_022346085.1 JAKRDI01 2324 2400 2400 11 6 57 2 Corynebacterium_gottingense_homd_HMT_207 GCA_022346125.1 HMT-207 ACRQG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense ACRQG 74 2565541 65.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/125/GCA_022346125.1_ASM2234612v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA694925 2026255 SAMN17729889 ASM2234612v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.466 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 97.25 99.34 0.05 99.97 0.04 GCF_022346125.1 JAKRDG01 2318 2393 2393 11 5 57 2 Corynebacterium_gottingense_homd_HMT_207 GCA_022346135.1 HMT-207 ACRQH Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense ACRQH 75 2566799 65.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/135/GCA_022346135.1_ASM2234613v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA694925 2026255 SAMN17729890 ASM2234613v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.490 USA skin Illumina NovaSeq NHGRI/NIH 81.0x 97.25 99.34 0.05 99.98 0.04 GCF_022346135.1 JAKRDH01 2329 2406 2406 11 7 57 2 Corynebacterium_gottingense_homd_HMT_207 GCA_022346165.1 HMT-445 ACRQA Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-445 Corynebacterium aurimucosum clade-445 ACRQA 52 2688050 60.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/165/GCA_022346165.1_ASM2234616v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium hesseae PRJNA694925 169292 SAMN17729884 ASM2234616v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.320 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 88.63 99.78 0 99.99 0.12 GCF_022346165.1 JAKRDE01 2494 2560 0 8 5 52 1 Corynebacterium_hesseae_homd_HMT_445 GCA_022346225.1 HMT-031 ACRPX Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum ACRPX 36 2451943 58.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/225/GCA_022346225.1_ASM2234622v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA694925 2918185 SAMN17729881 ASM2234622v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.210 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 100 0 100 0.11 GCF_022346225.1 JAKRMP01 2141 2216 2216 14 6 54 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_022346265.1 HMT-047 ACRPW Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-031 Corynebacterium amycolatum ACRPW 32 2426195 58.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/265/GCA_022346265.1_ASM2234626v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium_D PRJNA694925 43765 SAMN17729880 ASM2234626v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.183 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 94.97 100 0.6 100 0.97 GCF_022346265.1 JAKRDD01 2081 2157 2157 14 8 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_022346285.1 HMT-063 ACRQV Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-063 Corynebacterium singulare ACRQV 54 2775595 60.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/285/GCA_022346285.1_ASM2234628v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium singulare PRJNA694925 161899 SAMN17729903 ASM2234628v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.820 USA skin Illumina NovaSeq NHGRI/NIH 88.0x 96.62 99.78 0 100 0.04 GCF_022346285.1 JAKRDF01 2575 2644 2644 7 8 53 1 Corynebacterium_singulare_homd_HMT_063 GCA_022346305.1 HMT-030 ACRQQ Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-030 Corynebacterium afermentans ACRQQ 44 2306864 64.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/305/GCA_022346305.1_ASM2234630v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium afermentans PRJNA694925 38286 SAMN17729899 ASM2234630v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.693 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 97.7 97.54 0.22 99.92 0.04 GCF_022346305.1 JAKRDB01 2149 2221 2221 8 7 56 1 Corynebacterium_afermentans_homd_HMT_030 GCA_022346315.1 HMT-030 ACRPV Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-030 Corynebacterium afermentans ACRPV 69 2406062 64.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/315/GCA_022346315.1_ASM2234631v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium afermentans PRJNA694925 38286 SAMN17729879 ASM2234631v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.126 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 97.5 97.76 0.22 99.89 0.05 GCF_022346315.1 JAKRDC01 2218 2288 2288 8 7 54 1 Corynebacterium_afermentans_homd_HMT_030 GCA_022346345.1 HMT-054 ACRPU Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-054 Corynebacterium pilbarense ACRPU 48 2359061 64.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/345/GCA_022346345.1_ASM2234634v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pilbarense PRJNA694925 38286 SAMN17729878 ASM2234634v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.100 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 94.96 97.76 0.22 99.98 0.06 GCF_022346345.1 JAKRDA01 2183 2252 2252 8 7 53 1 Corynebacterium_pilbarense_homd_HMT_054 GCA_022346365.1 HMT-340 ACRRH Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-340 Brevibacterium paucivorans ACRRH 22 2466009 58.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/365/GCA_022346365.1_ASM2234636v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium;s__Brevibacterium paucivorans PRJNA694925 2918183 SAMN17729912 ASM2234636v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:16.103 USA skin Illumina NovaSeq NHGRI/NIH 88.0x 98.26 1.94 98.58 0.82 GCF_022346365.1 JAKRMN01 2266 2326 2326 7 6 46 1 Brevibacterium_paucivorans_homd_HMT_340 GCA_022346515.1 HMT-076 ACRRM Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ACRRM 28 2490980 32.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/515/GCA_022346515.1_ASM2234651v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA694925 1292 SAMN17729917 ASM2234651v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:16.290 USA skin Illumina NovaSeq NHGRI/NIH 87.0x 99.57 99.73 0 100 0.21 GCF_022346515.1 JAKREQ01 2394 2510 2510 50 7 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_022346625.1 HMT-578 ACRRN Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus ACRRN 19 1933836 42.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/625/GCA_022346625.1_ASM2234662v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus PRJNA694925 45634 SAMN17729918 ASM2234662v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:16.336 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 96.06 100 0 99.98 0.1 GCF_022346625.1 JAKREO01 1850 1939 1939 35 5 48 1 Streptococcus_cristatus_homd_HMT_578 GCA_022346665.1 HMT-331 ACRPT Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis ACRPT 40 2274060 37.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/665/GCA_022346665.1_ASM2234666v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJNA694925 29379 SAMN17729877 ASM2234666v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:15.066 USA skin Illumina NovaSeq NHGRI/NIH 86.0x 99.73 99.45 0 100 0.07 GCF_022346665.1 JAKREN01 2205 2313 2313 43 8 56 1 Staphylococcus_auricularis_homd_HMT_331 GCA_022346805.1 HMT-344 ACRSF Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-344 Pseudomonas luteola ACRSF 30 4707544 55.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/805/GCA_022346805.1_ASM2234680v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B;s__Pseudomonas_B luteola PRJNA694925 47886 SAMN17729935 ASM2234680v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:16.860 USA skin Illumina NovaSeq NHGRI/NIH 90.0x 98.16 98 1.86 100 0.93 GCF_022346805.1 JAKREJ01 4442 4559 4559 54 6 56 1 Pseudomonas_luteola_homd_HMT_344 GCA_022346865.1 HMT-552 ACRSE Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum ACRSE 20 2563643 63.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/865/GCA_022346865.1_ASM2234686v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA694925 33010 SAMN17729934 ASM2234686v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:16.833 USA skin Illumina NovaSeq NHGRI/NIH 81.0x 99.03 100 0 100 0.07 GCF_022346865.1 JAKREI01 2334 2410 2410 25 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_022346965.1 HMT-098 ACRPA Named Cultivated Nasal (Abundance: High) HMT-098 Moraxella nonliquefaciens ACRPA 63 2230443 42.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/346/965/GCA_022346965.1_ASM2234696v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella nonliquefaciens PRJNA694925 478 SAMN17729863 ASM2234696v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.633 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 98 96.85 0.41 100 0 GCF_022346965.1 JAKREH01 2091 2148 2148 11 3 42 1 Moraxella_nonliquefaciens_homd_HMT_098 GCA_022347225.1 HMT-077 CTNIH8 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum CTNIH8 51 2470047 59.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/347/225/GCA_022347225.1_ASM2234722v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_D PRJNA694925 2918201 SAMN17729874 ASM2234722v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.976 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.6 0.66 99.99 0.05 GCF_022347225.1 JAKRNF01 2357 2427 2427 9 6 54 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_022347235.1 HMT-077 CTNIH3 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum CTNIH3 60 2426471 59.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/347/235/GCA_022347235.1_ASM2234723v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_F PRJNA694925 38304 SAMN17729864 ASM2234723v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.673 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 96.23 99.6 0 99.96 0.06 GCF_022347235.1 JAKRDX01 2274 2344 2344 10 7 52 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_022347295.1 HMT-783 CTNIH24 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii CTNIH24 40 2457496 58.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/347/295/GCA_022347295.1_ASM2234729v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA694925 1979527 SAMN17729861 ASM2234729v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.576 USA skin Illumina NovaSeq NHGRI/NIH 86.0x 96.21 99.71 0.44 99.99 0.04 GCF_022347295.1 JAKRDW01 2344 2412 2412 9 6 52 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_022347325.1 HMT-783 CTNIH2 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii CTNIH2 40 2454916 58.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/347/325/GCA_022347325.1_ASM2234732v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA694925 3230063 SAMN17729860 ASM2234732v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.550 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.71 0.44 99.98 0.06 GCF_022347325.1 JAKRDU01 2345 2412 2412 9 5 52 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_022347335.1 HMT-077 CTNIH1 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum CTNIH1 59 2401840 59.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/347/335/GCA_022347335.1_ASM2234733v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_C PRJNA694925 38304 SAMN17729859 ASM2234733v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.520 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 96.17 99.6 0 99.98 0.04 GCF_022347335.1 JAKRDV01 2261 2327 2327 8 6 51 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_022347345.1 HMT-077 ACRPJ Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum ACRPJ 49 2405762 59.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/347/345/GCA_022347345.1_ASM2234734v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_D PRJNA694925 2918198 SAMN17729869 ASM2234734v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.830 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.6 0 99.99 0.11 GCF_022347345.1 JAKRNC01 2278 2347 2347 10 6 52 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_022347385.1 HMT-077 CTNIH4 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum CTNIH4 59 2435816 59.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/347/385/GCA_022347385.1_ASM2234738v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_F PRJNA694925 38304 SAMN17729865 ASM2234738v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.710 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 96.26 99.6 0 99.97 0.08 GCF_022347385.1 JAKRDT01 2291 2360 2360 9 7 52 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_022347395.1 HMT-077 ACRPF Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum ACRPF 51 2344812 59.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/347/395/GCA_022347395.1_ASM2234739v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_D PRJNA694925 2918197 SAMN17729867 ASM2234739v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.763 USA skin Illumina NovaSeq NHGRI/NIH 87.0x 99.6 0 99.98 0.07 GCF_022347395.1 JAKRNB01 2193 2262 2262 9 8 51 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_022347435.1 HMT-077 CTNIH5 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum CTNIH5 71 2530226 59.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/347/435/GCA_022347435.1_ASM2234743v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_D PRJNA694925 2918196 SAMN17729866 ASM2234743v1 Contig SPAdes v. 3.13.0 2021-02-01T14:55:14.733 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 99.6 0.22 100 0.12 GCF_022347435.1 JAKRNA01 2367 2436 2436 11 6 51 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_022350025.1 HMT-558 YSJ3 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-558 Levilactobacillus brevis YSJ3 8 2546891 45.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/350/025/GCA_022350025.1_ASM2235002v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis PRJNA804971 1580 SAMN25819437 ASM2235002v1 Complete Genome SPAdes v. 3.13.0; CANU v. 1.8 2022-02-09T21:47:02.926 China:Jingning Yeshanjun pickle Illumina HiSeq; PacBio Zhejiang Academy of Agricultural Sciences 100.0x 97.66 99.06 0 100 0.47 GCF_022350025.1 2508 2621 2621 32 15 65 1 Levilactobacillus_brevis_homd_HMT_558 GCA_022354605.1 HMT-676 SWHIN_109 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-676 Proteus mirabilis SWHIN_109 1 4000636 39.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/354/605/GCA_022354605.1_ASM2235460v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus;s__Proteus mirabilis PRJNA603241 584 SAMN13925601 ASM2235460v1 Complete Genome """Other"" v. Unicycler" 2020-01-26T21:10:06.886 Hong Kong Shek Wu Hui WWTPs_109 WWTPs influent Illumina; Oxford Nanopore GridION The University of Hong Kong 200.0x 99.16 100 0.54 100 0.22 GCF_022354605.1 3545 3726 3726 74 22 84 1 Proteus_mirabilis_homd_HMT_676 GCA_022359935.1 HMT-660 NLF2-7 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-660 Aquamicrobium lusatiense NLF2-7 12 5201486 62.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/359/935/GCA_022359935.1_ASM2235993v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium lusatiense PRJNA807442 2918753 SAMN25981959 ASM2235993v1 Contig CANU v. 1.7 2022-02-15T23:29:03.310 South Korea: Nonsan Livestock Wastewater PacBio Sequel; Illumina HiSeq Nakdonggang National Institute of Biological Resources (NNIBR) 162.0x 99.3 1.37 99.17 3.25 GCF_022359935.1 JAKSED01 4932 5040 5040 48 6 53 1 Aquamicrobium_lusatiense_homd_HMT_660 GCA_022404775.1 HMT-550 NAS_AN_270 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus NAS_AN_270 2 2801757 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/404/775/GCA_022404775.1_ASM2240477v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA626345 1280 SAMN15567958 ASM2240477v1 Complete Genome Uniclycler v. 0.4.8 2020-07-17T10:55:05.130 missing missing Illumina MiSeq; Oxford Nanopore University of central Florida 50.0x 98.79 99.51 0.1 100 0.18 GCF_022404775.1 2590 2782 2782 114 19 58 1 Staphylococcus_aureus_homd_HMT_550 GCA_022405435.1 HMT-550 NAS_AN_099 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus NAS_AN_099 2 2755455 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/405/435/GCA_022405435.1_ASM2240543v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA626345 1280 SAMN15567923 ASM2240543v1 Complete Genome Uniclycler v. 0.4.8 2020-07-17T10:55:04.557 missing missing Illumina MiSeq; Oxford Nanopore University of central Florida 50.0x 99.02 99.51 0.1 100 0.1 GCF_022405435.1 2493 2693 2693 119 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_022405595.1 HMT-550 NAS_AN_009 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus NAS_AN_009 2 2821889 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/405/595/GCA_022405595.1_ASM2240559v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA626345 1280 SAMN15567909 ASM2240559v1 Complete Genome Uniclycler v. 0.4.8 2020-07-17T10:55:04.333 missing missing Illumina MiSeq; Oxford Nanopore University of central Florida 50.0x 99.93 99.51 0.08 100 0.19 GCF_022405595.1 2589 2785 2785 114 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_022453685.1 HMT-960 VPI 0990 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-960 Agathobacter rectalis VPI 0990 1 3451485 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/453/685/GCA_022453685.1_ASM2245368v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__Agathobacter rectalis PRJNA807538 39491 SAMN26036043 ASM2245368v1 Complete Genome Unicycler v. 0.4.9 2022-02-18T03:55:04.286 Switzerland: Zurich Illumina iSeq; Oxford Nanopore MinION ETH Zurich 129.4x 99.99 99.52 0 99.99 0.27 GCF_022453685.1 3268 3458 3458 120 10 59 1 Agathobacter_rectalis_homd_HMT_960 GCA_022454195.1 HMT-839 DZD_CM_38_S806-bin_1 Named Cultivated Vaginal (Abundance: High) HMT-839 Lactobacillus jensenii DZD_CM_38_S806-bin_1 27 1594674 yes 34.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/454/195/GCA_022454195.1_ASM2245419v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus jensenii PRJNA799737 109790 SAMN25207490 ASM2245419v1 Scaffold SPAdes v. 3.13.032 2022-01-23T10:52:09.576 USA ectocervical mucosa Illumina HiSeq Massachusetts General Hospital 156.0x 99.92 95.73 0 90.52 0.28 GCF_022454195.1 JAKXDH01 1531 1580 1580 16 0 32 1 Lactobacillus_jensenii_homd_HMT_839 GCA_022454245.1 HMT-839 DZD_CM_35_S803-bin_1 Named Cultivated Vaginal (Abundance: High) HMT-839 Lactobacillus jensenii DZD_CM_35_S803-bin_1 25 1529884 yes 34.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/454/245/GCA_022454245.1_ASM2245424v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus jensenii PRJNA799737 109790 SAMN25207488 ASM2245424v1 Scaffold SPAdes v. 3.13.032 2022-01-23T10:52:09.550 USA ectocervical mucosa Illumina HiSeq Massachusetts General Hospital 56.0x 99.93 95.73 0 90.47 0.27 GCF_022454245.1 JAKXDF01 1452 1501 1501 16 0 32 1 Lactobacillus_jensenii_homd_HMT_839 GCA_022484865.1 HMT-120 51P6ENG_1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 51P6ENG_1 21 2341885 32.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/484/865/GCA_022484865.1_ASM2248486v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185749 ASM2248486v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.536 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.57 99.62 0 99.95 0.13 GCF_022484865.1 JAKVER01 2277 2400 2400 73 3 46 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022484905.1 HMT-120 H10FS1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus H10FS1 18 2355821 32.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/484/905/GCA_022484905.1_ASM2248490v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185750 ASM2248490v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.550 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.13 99.62 0.08 99.98 0.14 GCF_022484905.1 JAKVEQ01 2315 2446 2446 77 4 49 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022485005.1 HMT-120 114P2SUD1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 114P2SUD1 34 2387113 32.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/485/005/GCA_022485005.1_ASM2248500v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185769 ASM2248500v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.840 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 98.12 99.57 0.08 99.94 0.04 GCF_022485005.1 JAKVDX01 2366 2482 2482 75 4 36 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022485095.1 HMT-120 051P1ENP_1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 051P1ENP_1 32 2409183 32.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/485/095/GCA_022485095.1_ASM2248509v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185743 ASM2248509v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.446 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.11 99.62 0.65 99.99 0.24 GCF_022485095.1 JAKVEX01 2376 2503 2503 79 5 42 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022485125.1 HMT-120 C91NS1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus C91NS1 35 2495391 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/485/125/GCA_022485125.1_ASM2248512v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185737 ASM2248512v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.356 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.9 99.62 0.08 100 0.07 GCF_022485125.1 JAKVFD01 2437 2559 2559 77 4 40 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022485285.1 HMT-120 85P1FS1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 85P1FS1 36 2340269 32.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/485/285/GCA_022485285.1_ASM2248528v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185759 ASM2248528v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.690 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.33 99.62 0 99.99 0.02 GCF_022485285.1 JAKVEH01 2283 2407 2407 81 4 38 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022485485.1 HMT-120 051P5ENP_1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 051P5ENP_1 42 2276175 32.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/485/485/GCA_022485485.1_ASM2248548v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185748 ASM2248548v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.520 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 99.05 99.62 0.14 99.98 0 GCF_022485485.1 JAKVES01 2212 2329 2329 73 2 41 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022485685.1 HMT-120 C84FS2 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus C84FS2 46 2421236 32.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/485/685/GCA_022485685.1_ASM2248568v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185733 ASM2248568v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.296 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 99.16 99.62 0 99.99 0.16 GCF_022485685.1 JAKVFH01 2365 2491 2491 75 1 49 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022485725.1 HMT-120 051P4ENG_1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 051P4ENG_1 37 2477201 32.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/485/725/GCA_022485725.1_ASM2248572v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185747 ASM2248572v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.506 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.02 99.62 0.65 99.99 0.61 GCF_022485725.1 JAKVET01 2453 2571 2571 72 5 40 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022485825.1 HMT-120 C61NS2 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus C61NS2 30 2419336 32.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/485/825/GCA_022485825.1_ASM2248582v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185735 ASM2248582v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.326 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.77 99.62 0.18 100 0.04 GCF_022485825.1 JAKVFF01 2338 2460 2460 71 8 42 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022486125.1 HMT-120 C86FS1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus C86FS1 49 2461968 32.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/486/125/GCA_022486125.1_ASM2248612v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185723 ASM2248612v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.143 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 99.16 99.62 0 99.99 0.03 GCF_022486125.1 JAKVFR01 2422 2550 2550 76 4 47 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022486245.1 HMT-120 C38NS1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus C38NS1 27 2506624 32.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/486/245/GCA_022486245.1_ASM2248624v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185717 ASM2248624v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:07.046 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.78 99.46 0 100 0.11 GCF_022486245.1 JAKVFX01 2403 2525 2525 73 8 40 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022486365.1 HMT-120 103P3NS1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 103P3NS1 19 2559563 32.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/486/365/GCA_022486365.1_ASM2248636v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185705 ASM2248636v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:06.773 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.72 99.73 0.59 100 1.25 GCF_022486365.1 JAKVGJ01 2511 2642 2642 76 5 49 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022486405.1 HMT-120 37P8SUD1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 37P8SUD1 30 2524658 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/486/405/GCA_022486405.1_ASM2248640v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185704 ASM2248640v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:06.760 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.31 99.62 0.08 100 0.23 GCF_022486405.1 JAKVGK01 2434 2561 2561 79 7 40 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022487705.1 HMT-120 008P5SUE2 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 008P5SUE2 28 2445437 32.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/487/705/GCA_022487705.1_ASM2248770v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185690 ASM2248770v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:06.543 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.16 99.62 0.67 99.98 0.34 GCF_022487705.1 JAKVGY01 2401 2522 2522 77 3 40 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022487725.1 HMT-120 007P2ENG3BHI Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 007P2ENG3BHI 36 2378928 32.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/487/725/GCA_022487725.1_ASM2248772v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185684 ASM2248772v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:06.446 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.14 99.62 0.08 99.99 0.22 GCF_022487725.1 JAKVHE01 2322 2448 2448 73 3 49 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022487785.1 HMT-120 008P4SUE001 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 008P4SUE001 12 2456999 32.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/487/785/GCA_022487785.1_ASM2248778v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA783189 1283 SAMN26185688 ASM2248778v1 Scaffold SPAdes v. 3.10 2022-02-23T07:08:06.513 China not applicable Illumina HiSeq Sun-yat Sen University 200.0x 97.55 99.62 0.08 100 0.1 GCF_022487785.1 JAKVHA01 2380 2499 2499 76 4 38 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022494545.1 HMT-550 199 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 199 1 2844011 32.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/494/545/GCA_022494545.1_ASM2249454v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA783074 1280 SAMN23416073 ASM2249454v1 Complete Genome SMRT Link v. v5.0.1 2021-11-23T21:07:04.233 China: Guangzhou PUS PacBio Guangzhou Medical University 120.0x 98.94 99.51 0.08 100 0.19 GCF_022494545.1 2643 2835 2835 111 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_022531845.1 HMT-116 LR 95 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis LR 95 3 2632988 32.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/531/845/GCA_022531845.1_ASM2253184v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA809125 29388 SAMN26306309 ASM2253184v1 Complete Genome Unicycler v. v.0.4.4 2022-02-28T10:11:05.815 China Illumina NovaSeq 6000; Oxford Nanopore PromethION 48 The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University 200.0x 98.98 99.81 0.28 100 0.18 GCF_022531845.1 2516 2646 2646 51 16 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_022538035.1 HMT-328 RC Named Cultivated Skin (Abundance: Scarce) HMT-328 Corynebacterium mastitidis RC 42 2153054 69.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/538/035/GCA_022538035.1_ASM2253803v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium mastitidis PRJNA758739 161890 SAMN21033600 ASM2253803v1 Contig Unicycler v. 0.4.8; SPAdes v. 3.15.2; Pilon v. 1.23 2021-08-30T00:31:04.490 USA:Maryland Conjunctiva Illumina MiSeq National Eye Institute 89.0x 96.65 95.7 0.62 95.84 0.12 GCF_022538035.1 JAKRKB01 2035 2104 2104 11 3 54 1 Corynebacterium_mastitidis_homd_HMT_328 GCA_022568915.1 HMT-128 P5-13 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis P5-13 32 2549897 33.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/568/915/GCA_022568915.1_ASM2256891v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838657 ASM2256891v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.867 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 173.0x 99.95 99.61 0 100 0.11 GCF_022568915.1 JAKRKF01 2394 2535 2535 84 2 54 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022568935.1 HMT-128 D2-12 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis D2-12 25 2532348 33.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/568/935/GCA_022568935.1_ASM2256893v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838659 ASM2256893v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.890 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 89.0x 99.5 99.49 0 100 0.06 GCF_022568935.1 JAKRKD01 2383 2523 2523 80 3 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022568955.1 HMT-128 P8-10 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis P8-10 42 2522674 33.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/568/955/GCA_022568955.1_ASM2256895v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838656 ASM2256895v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.853 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 132.0x 99.57 99.61 0 100 0.05 GCF_022568955.1 JAKRKG01 2369 2515 2515 85 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022568975.1 HMT-128 E1-48 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis E1-48 25 2586588 33.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/568/975/GCA_022568975.1_ASM2256897v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838655 ASM2256897v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.843 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 146.0x 99.56 99.04 0 100 0.06 GCF_022568975.1 JAKRKH01 2426 2574 2574 87 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022568985.1 HMT-128 P6-7 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis P6-7 34 2536521 33.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/568/985/GCA_022568985.1_ASM2256898v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838658 ASM2256898v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.877 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 145.0x 99.45 99.61 0 100 0.05 GCF_022568985.1 JAKRKE01 2365 2509 2509 85 2 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569015.1 HMT-128 B6-6 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis B6-6 20 2547873 33.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/015/GCA_022569015.1_ASM2256901v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838654 ASM2256901v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.830 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 142.0x 99.45 99.61 0 100 0.07 GCF_022569015.1 JAKRKI01 2376 2523 2523 86 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569035.1 HMT-128 B6-3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis B6-3 23 2575268 33.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/035/GCA_022569035.1_ASM2256903v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838653 ASM2256903v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.817 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 150.0x 99.45 99.61 0 100 0.08 GCF_022569035.1 JAKRKJ01 2401 2544 2544 82 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569055.1 HMT-128 B5-16 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis B5-16 19 2560903 33.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/055/GCA_022569055.1_ASM2256905v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838652 ASM2256905v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.807 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 139.0x 99.96 99.61 0 100 0.1 GCF_022569055.1 JAKRKK01 2412 2556 2556 85 4 54 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569075.1 HMT-128 D2-19 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis D2-19 12 2585050 33.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/075/GCA_022569075.1_ASM2256907v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838650 ASM2256907v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.783 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 159.0x 99.55 99.61 0 100 0.04 GCF_022569075.1 JAKRKM01 2423 2570 2570 86 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569085.1 HMT-128 D3-12 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis D3-12 32 2649731 33.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/085/GCA_022569085.1_ASM2256908v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838651 ASM2256908v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.793 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 138.0x 99.55 99.61 0 100 0.22 GCF_022569085.1 JAKRKL01 2504 2652 2652 87 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569095.1 HMT-128 D4-9 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis D4-9 15 2517845 33.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/095/GCA_022569095.1_ASM2256909v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838649 ASM2256909v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.770 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 166.0x 99.42 99.61 0 100 0.11 GCF_022569095.1 JAKRKN01 2390 2531 2531 81 3 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569135.1 HMT-128 E1-36 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis E1-36 37 2576831 33.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/135/GCA_022569135.1_ASM2256913v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838648 ASM2256913v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.757 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 135.0x 99.55 99.56 0 100 0.07 GCF_022569135.1 JAKRKO01 2423 2569 2569 87 4 54 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569155.1 HMT-128 P2-40 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis P2-40 33 2598745 33.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/155/GCA_022569155.1_ASM2256915v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838647 ASM2256915v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.747 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 164.0x 99.53 99.56 0 100 0.08 GCF_022569155.1 JAKRKP01 2425 2573 2573 89 4 54 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569175.1 HMT-128 IVK84 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis IVK84 22 2586047 33.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/175/GCA_022569175.1_ASM2256917v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838643 ASM2256917v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.693 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 130.0x 99.56 99.61 0 100 0.05 GCF_022569175.1 JAKRKR01 2429 2576 2576 86 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569195.1 HMT-128 IVK68 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis IVK68 18 2635037 33.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/195/GCA_022569195.1_ASM2256919v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838642 ASM2256919v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.680 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 112.0x 99.55 99.61 0 100 0.08 GCF_022569195.1 JAKRKS01 2504 2652 2652 87 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569205.1 HMT-128 D2-16 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis D2-16 18 2535332 33.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/205/GCA_022569205.1_ASM2256920v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838645 ASM2256920v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.720 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 149.0x 99.95 99.61 0 100 0.09 GCF_022569205.1 JAKRKQ01 2361 2504 2504 85 3 54 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569235.1 HMT-128 IVK28 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis IVK28 24 2521981 33.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/235/GCA_022569235.1_ASM2256923v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838641 ASM2256923v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.667 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 137.0x 99.45 99.61 0 100 0.05 GCF_022569235.1 JAKRKT01 2344 2490 2490 85 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569245.1 HMT-128 14-2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis 14-2 31 2495017 33.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/245/GCA_022569245.1_ASM2256924v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838640 ASM2256924v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.657 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 127.0x 99.44 99.61 0 100 0.04 GCF_022569245.1 JAKRKU01 2342 2486 2486 85 2 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022569275.1 HMT-128 12-3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis 12-3 17 2634709 33.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/569/275/GCA_022569275.1_ASM2256927v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838639 ASM2256927v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.617 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 129.0x 99.51 99.61 0 100 0.08 GCF_022569275.1 JAKRKV01 2504 2652 2652 87 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022641135.1 HMT-890 UW_MP_BIF14_1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-890 Bifidobacterium subtile UW_MP_BIF14_1 50 2186116 61.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/641/135/GCA_022641135.1_ASM2264113v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium subtile PRJNA768551 77635 SAMN22412161 ASM2264113v1 Contig metaspades v. 3.14.1 2021-10-19T15:25:54.387 USA: Madison, WI anaerobic bioreactor effluent Illumina NovaSeq S4 DOE Joint Genome Institute 154.0x 98.95 89.48 3.03 85.55 1.61 JALCDA01 1748 1803 1803 16 0 39 0 Bifidobacterium_subtile_homd_HMT_890 GCA_022648595.1 HMT-604 UAMS_EL53 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-604 Enterococcus faecalis UAMS_EL53 5 3292098 37.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/648/595/GCA_022648595.1_ASM2264859v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis PRJNA735268 1351 SAMN19573779 ASM2264859v1 Complete Genome Flye v. v2.8.2; Racon v. v1.4.20; Medaka v. v1.2.1; Pilon v. v1.23 2021-06-04T18:19:04.976 USA:Little Rock blood Oxford Nanopore MinION; Illumina NextSeq University of Arkansas for Medical Sciences 200.0x 99.01 99.53 0.56 100 0.13 GCF_022648595.1 3208 3379 3379 97 12 61 1 Enterococcus_faecalis_homd_HMT_604 GCA_022660955.1 HMT-128 E1-10 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis E1-10 20 2516899 33.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/660/955/GCA_022660955.1_ASM2266095v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA796272 28035 SAMN24838644 ASM2266095v1 Contig nf-core/bacass v. 2.0.0 2022-01-11T11:50:03.707 Germany: Tuebingen Nasal cavity Illumina MiSeq Eberhard Karls Universitaet Tuebingen 166.0x 99.44 99.61 0 100 0.05 GCF_022660955.1 JAKEZL01 2342 2488 2488 85 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022664405.1 HMT-087 DSM 27472 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-087 Micrococcus luteus DSM 27472 64 2516961 72.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/664/405/GCA_022664405.1_ASM2266440v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus;s__Micrococcus luteus PRJNA806703 1391911 SAMN25894996 ASM2266440v1 Scaffold SOAPdenovo v. 2.04 2022-02-14T02:11:04.550 India the inner fleshy leaf tissue Illumina HiSeq JIUJIANG UNIVERSITY 679.0x 98.7 0.46 99.99 0 GCF_022664405.1 JAKRLB01 2289 2360 2360 13 7 50 1 Micrococcus_luteus_homd_HMT_087 GCA_022688765.1 HMT-076 acrmw Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri acrmw 27 2523508 32.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/688/765/GCA_022688765.1_ASM2268876v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri_A PRJNA546603 1292 SAMN11962526 ASM2268876v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.370 USA skin Illumina NovaSeq NHGRI/NIH 89.0x 94.12 99.73 0.11 100 0.23 GCF_022688765.1 JALCYJ01 2471 2572 2572 56 6 38 1 Staphylococcus_warneri_homd_HMT_076 GCA_022688935.1 HMT-076 acros Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri acros 34 2601616 32.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/688/935/GCA_022688935.1_ASM2268893v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA546603 1292 SAMN11962574 ASM2268893v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:07.240 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 99.63 99.73 0.71 99.99 0.25 GCF_022688935.1 JALCYF01 2523 2621 2621 56 5 36 1 Staphylococcus_warneri_homd_HMT_076 GCA_022688945.1 HMT-076 acroi Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri acroi 28 2470727 32.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/688/945/GCA_022688945.1_ASM2268894v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA546603 1292 SAMN11962564 ASM2268894v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:07.020 USA skin Illumina NovaSeq NHGRI/NIH 79.0x 98.82 99.73 0 99.99 0.05 GCF_022688945.1 JALCYG01 2398 2506 2506 50 3 54 1 Staphylococcus_warneri_homd_HMT_076 GCA_022688985.1 HMT-076 acroj Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri acroj 33 2632495 32.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/688/985/GCA_022688985.1_ASM2268898v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA546603 1292 SAMN11962565 ASM2268898v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:07.036 USA skin Illumina NovaSeq NHGRI/NIH 89.0x 99.65 99.73 0.78 100 1.11 GCF_022688985.1 JALCYH01 2564 2664 2664 50 4 45 1 Staphylococcus_warneri_homd_HMT_076 GCA_022689005.1 HMT-076 acror Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri acror 33 2584632 32.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/005/GCA_022689005.1_ASM2268900v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA546603 1292 SAMN11962573 ASM2268900v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:07.220 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.62 99.73 0.71 100 0.24 GCF_022689005.1 JALCYE01 2504 2604 2604 54 5 40 1 Staphylococcus_warneri_homd_HMT_076 GCA_022689035.1 HMT-076 acroq Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri acroq 27 2468930 32.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/035/GCA_022689035.1_ASM2268903v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA546603 1292 SAMN11962572 ASM2268903v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:07.203 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 98.81 99.73 0 99.99 0.05 GCF_022689035.1 JALCYD01 2401 2494 2494 49 4 39 1 Staphylococcus_warneri_homd_HMT_076 GCA_022689125.1 HMT-128 acrnn Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnn 38 2544169 33.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/125/GCA_022689125.1_ASM2268912v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962543 ASM2268912v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.666 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.55 99.56 0 100 0.08 GCF_022689125.1 JALCXY01 2371 2512 2512 89 6 45 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689145.1 HMT-128 acrnq Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnq 28 2575389 33.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/145/GCA_022689145.1_ASM2268914v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962546 ASM2268914v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.720 USA skin Illumina NovaSeq NHGRI/NIH 87.0x 99.45 99.61 0 100 0.06 GCF_022689145.1 JALCXV01 2427 2561 2561 86 5 42 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689165.1 HMT-128 acrnm Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnm 34 2545411 33.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/165/GCA_022689165.1_ASM2268916v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962542 ASM2268916v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.650 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 99.55 99.56 0 100 0.08 GCF_022689165.1 JALCXX01 2372 2514 2514 89 6 46 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689185.1 HMT-128 acrnx Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnx 21 2580366 33.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/185/GCA_022689185.1_ASM2268918v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962553 ASM2268918v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.836 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.44 99.61 0 100 0.06 GCF_022689185.1 JALCXW01 2432 2574 2574 86 6 49 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689205.1 HMT-128 acrnv Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnv 31 2577496 33.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/205/GCA_022689205.1_ASM2268920v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962551 ASM2268920v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.803 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 99.44 99.61 0 100 0.06 GCF_022689205.1 JALCXU01 2428 2569 2569 85 5 50 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689225.1 HMT-128 acrnu Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnu 43 2571640 33.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/225/GCA_022689225.1_ASM2268922v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962550 ASM2268922v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.786 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 99.43 99.61 0 100 0.1 GCF_022689225.1 JALCXR01 2424 2548 2548 82 5 36 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689235.1 HMT-128 acrnk Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnk 24 2620375 33.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/235/GCA_022689235.1_ASM2268923v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962540 ASM2268923v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.606 USA skin Illumina NovaSeq NHGRI/NIH 86.0x 99.53 99.61 0 100 0.12 GCF_022689235.1 JALCXS01 2463 2604 2604 89 5 46 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689255.1 HMT-128 acrnt Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnt 60 2635867 33.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/255/GCA_022689255.1_ASM2268925v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962549 ASM2268925v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.770 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 99.57 99.61 0.12 100 0.1 GCF_022689255.1 JALCXT01 2494 2625 2625 85 5 40 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689285.1 HMT-128 acrnh Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnh 32 2544697 33.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/285/GCA_022689285.1_ASM2268928v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962537 ASM2268928v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.556 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 99.55 99.56 0 100 0.07 GCF_022689285.1 JALCXQ01 2372 2505 2505 88 6 38 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689305.1 HMT-128 acrnp Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnp 32 2577616 33.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/305/GCA_022689305.1_ASM2268930v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962545 ASM2268930v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.703 USA skin Illumina NovaSeq NHGRI/NIH 87.0x 99.42 99.61 0 100 0.06 GCF_022689305.1 JALCXP01 2428 2567 2567 85 5 48 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689325.1 HMT-128 acrnj Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnj 23 2621768 33.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/325/GCA_022689325.1_ASM2268932v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962539 ASM2268932v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.590 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.53 99.61 0 100 0.12 GCF_022689325.1 JALCXM01 2464 2606 2606 89 5 47 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689335.1 HMT-128 acrnw Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnw 21 2577291 33.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/335/GCA_022689335.1_ASM2268933v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962552 ASM2268933v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.820 USA skin Illumina NovaSeq NHGRI/NIH 87.0x 99.58 99.61 0 100 0.09 GCF_022689335.1 JALCXN01 2393 2538 2538 88 6 50 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689365.1 HMT-128 acrnr Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnr 29 2640633 33.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/365/GCA_022689365.1_ASM2268936v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962547 ASM2268936v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.736 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.56 99.61 0 100 0.11 GCF_022689365.1 JALCXL01 2496 2636 2636 86 6 47 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689385.1 HMT-128 acrns Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrns 55 2639987 33.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/385/GCA_022689385.1_ASM2268938v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962548 ASM2268938v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.753 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 99.55 99.61 0 100 0.13 GCF_022689385.1 JALCXO01 2495 2625 2625 85 7 37 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689405.1 HMT-128 acrng Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrng 38 2545528 33.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/405/GCA_022689405.1_ASM2268940v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962536 ASM2268940v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.540 USA skin Illumina NovaSeq NHGRI/NIH 86.0x 99.55 99.56 0 100 0.08 GCF_022689405.1 JALCXK01 2371 2515 2515 88 6 49 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689425.1 HMT-128 acrnf Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnf 38 2545213 33.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/425/GCA_022689425.1_ASM2268942v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962535 ASM2268942v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.523 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 99.55 99.56 0 100 0.07 GCF_022689425.1 JALCXI01 2372 2514 2514 89 6 46 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689445.1 HMT-128 acrny Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrny 34 2542918 33.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/445/GCA_022689445.1_ASM2268944v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962554 ASM2268944v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.853 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 99.55 99.56 0 100 0.08 GCF_022689445.1 JALCXJ01 2368 2500 2500 88 6 37 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689465.1 HMT-128 acrne Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrne 36 2545328 33.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/465/GCA_022689465.1_ASM2268946v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962534 ASM2268946v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.506 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 99.55 99.56 0 100 0.07 GCF_022689465.1 JALCXH01 2371 2511 2511 87 6 46 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689485.1 HMT-128 acrna Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrna 54 2525960 33.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/485/GCA_022689485.1_ASM2268948v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962530 ASM2268948v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.436 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 99.44 99.61 0 100 0.06 GCF_022689485.1 JALCXF01 2355 2478 2478 83 5 34 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689495.1 HMT-128 acrnc Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnc 49 2535567 33.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/495/GCA_022689495.1_ASM2268949v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962532 ASM2268949v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.473 USA skin Illumina NovaSeq NHGRI/NIH 81.0x 99.46 99.61 0 100 0.07 GCF_022689495.1 JALCXG01 2345 2480 2480 83 5 46 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689525.1 HMT-128 acrnb Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnb 58 2527888 33.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/525/GCA_022689525.1_ASM2268952v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962531 ASM2268952v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.456 USA skin Illumina NovaSeq NHGRI/NIH 81.0x 99.43 99.61 0.28 100 0.02 GCF_022689525.1 JALCXE01 2359 2491 2491 85 4 42 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689545.1 HMT-128 acrmz Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrmz 36 2575402 33.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/545/GCA_022689545.1_ASM2268954v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962529 ASM2268954v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.420 USA skin Illumina NovaSeq NHGRI/NIH 81.0x 99.46 99.61 0 100 0.12 GCF_022689545.1 JALCXC01 2414 2541 2541 81 5 40 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689575.1 HMT-127 acrlz Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrlz 31 2259789 31.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/575/GCA_022689575.1_ASM2268957v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962503 ASM2268957v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.973 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 99.34 99.38 1.14 100 0.16 GCF_022689575.1 JALCXB01 2225 2328 2328 57 4 41 1 Staphylococcus_hominis_homd_HMT_127 GCA_022689605.1 HMT-128 acrnd Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis acrnd 43 2521784 33.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/605/GCA_022689605.1_ASM2268960v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA546603 28035 SAMN11962533 ASM2268960v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.490 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 99.48 99.61 0 100 0.06 GCF_022689605.1 JALCXD01 2347 2488 2488 83 7 50 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_022689645.1 HMT-127 acrln Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrln 34 2277235 31.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/645/GCA_022689645.1_ASM2268964v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962491 ASM2268964v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.773 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 99.29 99.38 0.31 100 0.02 GCF_022689645.1 JALCWY01 2221 2328 2328 55 4 47 1 Staphylococcus_hominis_homd_HMT_127 GCA_022689665.1 HMT-127 acrly Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrly 28 2260117 31.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/665/GCA_022689665.1_ASM2268966v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962502 ASM2268966v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.956 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.34 99.38 1.14 100 0.16 GCF_022689665.1 JALCWW01 2229 2332 2332 57 4 41 1 Staphylococcus_hominis_homd_HMT_127 GCA_022689725.1 HMT-127 acrlx Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrlx 31 2258694 31.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/725/GCA_022689725.1_ASM2268972v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962501 ASM2268972v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.940 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 99.34 99.38 1.14 100 0.16 GCF_022689725.1 JALCWU01 2225 2325 2325 57 4 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_022689775.1 HMT-127 acrll Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrll 26 2284405 31.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/775/GCA_022689775.1_ASM2268977v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962489 ASM2268977v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.740 USA skin Illumina NovaSeq NHGRI/NIH 79.0x 99.3 99.38 0.11 100 0.06 GCF_022689775.1 JALCWP01 2242 2343 2343 58 4 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_022689785.1 HMT-127 acrmm Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrmm 31 2217530 31.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/785/GCA_022689785.1_ASM2268978v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962516 ASM2268978v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.203 USA skin Illumina NovaSeq NHGRI/NIH 86.0x 99.3 99.38 0.28 100 0.04 GCF_022689785.1 JALCWS01 2153 2252 2252 57 3 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_022689855.1 HMT-127 acrlv Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrlv 33 2309757 31.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/855/GCA_022689855.1_ASM2268985v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962499 ASM2268985v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.906 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.21 99.1 0.02 99.99 0.07 GCF_022689855.1 JALCWM01 2268 2364 2364 53 4 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_022689945.1 HMT-127 acrlj Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrlj 34 2276076 31.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/689/945/GCA_022689945.1_ASM2268994v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962487 ASM2268994v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.710 USA skin Illumina NovaSeq NHGRI/NIH 81.0x 99.07 99.38 0.57 99.98 0.75 GCF_022689945.1 JALCWI01 2206 2309 2309 53 3 46 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690005.1 HMT-127 acrlh Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrlh 23 2268944 31.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/005/GCA_022690005.1_ASM2269000v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962485 ASM2269000v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.676 USA skin Illumina NovaSeq NHGRI/NIH 86.0x 99.19 99.1 0.07 100 0.05 GCF_022690005.1 JALCWG01 2234 2340 2340 55 3 47 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690025.1 HMT-127 acrlu Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrlu 32 2266768 31.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/025/GCA_022690025.1_ASM2269002v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962498 ASM2269002v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.890 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 99.39 99.38 0 100 0.28 GCF_022690025.1 JALCWF01 2226 2326 2326 56 5 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690045.1 HMT-127 acrlt Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrlt 28 2267685 31.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/045/GCA_022690045.1_ASM2269004v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962497 ASM2269004v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.873 USA skin Illumina NovaSeq NHGRI/NIH 79.0x 99.19 99.1 0.07 100 0.05 GCF_022690045.1 JALCWE01 2233 2331 2331 55 4 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690065.1 HMT-127 acrmj Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrmj 24 2194294 31.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/065/GCA_022690065.1_ASM2269006v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962513 ASM2269006v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.153 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 99.12 99.38 0.85 99.99 0.04 GCF_022690065.1 JALCWC01 2125 2231 2231 52 3 50 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690145.1 HMT-127 acrlf Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrlf 23 2213328 31.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/145/GCA_022690145.1_ASM2269014v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962483 ASM2269014v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.646 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 99.11 99.38 0.85 100 0.09 GCF_022690145.1 JALCVZ01 2143 2246 2246 52 3 47 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690165.1 HMT-127 acrle Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrle 24 2193257 31.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/165/GCA_022690165.1_ASM2269016v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962482 ASM2269016v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.626 USA skin Illumina NovaSeq NHGRI/NIH 84.0x 99.12 99.38 0.85 99.99 0.04 GCF_022690165.1 JALCVY01 2126 2221 2221 52 4 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690185.1 HMT-127 acrlr Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrlr 23 2245889 31.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/185/GCA_022690185.1_ASM2269018v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962495 ASM2269018v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.840 USA skin Illumina NovaSeq NHGRI/NIH 78.0x 99.24 99.38 0 100 0.01 GCF_022690185.1 JALCVX01 2206 2316 2316 58 5 46 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690225.1 HMT-127 acrlq Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrlq 27 2216034 31.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/225/GCA_022690225.1_ASM2269022v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962494 ASM2269022v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:05.823 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 98.8 99.38 0 99.99 0.06 GCF_022690225.1 JALCVW01 2114 2209 2209 51 5 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690265.1 HMT-127 acrmp Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrmp 22 2189068 31.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/265/GCA_022690265.1_ASM2269026v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962519 ASM2269026v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.253 USA skin Illumina NovaSeq NHGRI/NIH 88.0x 99.14 99.38 0.85 99.99 0.08 GCF_022690265.1 JALCVT01 2111 2208 2208 53 4 39 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690275.1 HMT-127 acrmr Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrmr 27 2211478 31.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/275/GCA_022690275.1_ASM2269027v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962521 ASM2269027v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.286 USA skin Illumina NovaSeq NHGRI/NIH 88.0x 99.11 99.38 0.57 99.99 0.06 GCF_022690275.1 JALCVQ01 2155 2251 2251 52 4 39 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690295.1 HMT-127 acrmv Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrmv 27 2268824 31.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/295/GCA_022690295.1_ASM2269029v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962525 ASM2269029v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.353 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 99.09 99.1 0.92 99.99 0.04 GCF_022690295.1 JALCVR01 2234 2330 2330 53 3 39 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690325.1 HMT-127 acrno Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrno 30 2229319 31.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/325/GCA_022690325.1_ASM2269032v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962544 ASM2269032v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.686 USA skin Illumina NovaSeq NHGRI/NIH 78.0x 99.12 99.38 1.06 100 0.07 GCF_022690325.1 JALCVS01 2168 2264 2264 54 3 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690375.1 HMT-127 acrmt Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrmt 26 2286950 31.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/375/GCA_022690375.1_ASM2269037v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962523 ASM2269037v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.320 USA skin Illumina NovaSeq NHGRI/NIH 81.0x 99.2 99.1 0 99.99 0.02 GCF_022690375.1 JALCVN01 2253 2349 2349 54 3 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690425.1 HMT-127 acrmn Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis acrmn 32 2343435 31.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/425/GCA_022690425.1_ASM2269042v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA546603 1290 SAMN11962517 ASM2269042v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.220 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 99 99.38 0.57 100 0.21 GCF_022690425.1 JALCVO01 2300 2410 2410 53 6 50 1 Staphylococcus_hominis_homd_HMT_127 GCA_022690445.1 HMT-120 acroh Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus acroh 45 2407753 32.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/445/GCA_022690445.1_ASM2269044v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA546603 1283 SAMN11962563 ASM2269044v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:07.003 USA skin Illumina NovaSeq NHGRI/NIH 85.0x 97.39 99.62 0.37 99.97 0.25 GCF_022690445.1 JALCVK01 2368 2494 2494 84 5 36 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022690485.1 HMT-120 acroa Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus acroa 48 2337166 32.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/485/GCA_022690485.1_ASM2269048v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA546603 1283 SAMN11962556 ASM2269048v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.886 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 97.14 99.62 0.43 99.96 0.01 GCF_022690485.1 JALCVG01 2318 2441 2441 77 6 39 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022690525.1 HMT-120 acrob Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus acrob 42 2368537 32.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/525/GCA_022690525.1_ASM2269052v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA546603 1283 SAMN11962557 ASM2269052v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.903 USA skin Illumina NovaSeq NHGRI/NIH 82.0x 97.03 99.62 0.08 99.99 0.35 GCF_022690525.1 JALCVH01 2328 2444 2444 73 5 37 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022690545.1 HMT-120 acrnz Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus acrnz 49 2355844 32.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/545/GCA_022690545.1_ASM2269054v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA546603 1283 SAMN11962555 ASM2269054v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.870 USA skin Illumina NovaSeq NHGRI/NIH 81.0x 97.03 99.62 0.08 99.99 0.33 GCF_022690545.1 JALCVF01 2321 2440 2440 73 5 40 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022690585.1 HMT-567 acrog Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae acrog 44 2629195 33.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/690/585/GCA_022690585.1_ASM2269058v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA546603 29380 SAMN11962562 ASM2269058v1 Contig SPAdes v. 3.13.0 2019-06-05T14:00:06.986 USA skin Illumina NovaSeq NHGRI/NIH 83.0x 98.67 99.81 0 100 0.02 GCF_022690585.1 JALCVC01 2498 2618 2618 71 5 43 1 Staphylococcus_caprae_homd_HMT_567 GCA_022691405.1 HMT-550 MRSA-WC061 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus MRSA-WC061 2 2844400 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/691/405/GCA_022691405.1_ASM2269140v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA808078 1280 SAMN26026629 ASM2269140v1 Complete Genome Unicycler v. 0.4.8 2022-02-17T15:21:03.080 USA Nephrostomy Illumina MiSeq and Oxford Nanopore MinION Wadsworth Center - NYS DOH 325.0x 98.92 99.51 0.08 100 0.17 GCF_022691405.1 2619 2819 2819 119 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_022693225.1 HMT-550 VRMSSA-WC111 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus VRMSSA-WC111 2 2897139 32.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/693/225/GCA_022693225.1_ASM2269322v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA808078 1280 SAMN26026639 ASM2269322v1 Complete Genome Unicycler v. 0.4.8 2022-02-17T15:21:03.227 USA urine Illumina MiSeq and Oxford Nanopore MinION Wadsworth Center - NYS DOH 81.0x 98.93 99.51 0.58 100 0.16 GCF_022693225.1 2701 2901 2901 119 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_022693345.1 HMT-127 C5 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis C5 7 2447570 31.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/693/345/GCA_022693345.1_ASM2269334v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA816516 1290 SAMN26679620 ASM2269334v1 Complete Genome Unicycler v. 0.5.0 2022-03-15T15:54:04.410 USA Illumina NextSeq; Oxford Nanopore University of Colorado Anschutz Medical Campus 1.1x 99.22 99.38 0.38 100 0.18 GCF_022693345.1 2403 2535 2535 50 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_022695885.1 HMT-127 384 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis 384 5 2315909 31.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/695/885/GCA_022695885.1_ASM2269588v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA808897 145391 SAMN26134968 ASM2269588v1 Contig Hybrid assembly in Unicycler v. 2021 2022-02-21T10:01:03.733 Thailand: Bangkok skin wound Oxford Nanopore MinION Mahidol University 398.0x 99.14 99.38 1.14 99.98 0.05 GCF_022695885.1 JAKUUV01 2187 2351 2351 81 19 63 1 Staphylococcus_hominis_homd_HMT_127 GCA_022695905.1 HMT-120 1864 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 1864 8 2591539 32.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/695/905/GCA_022695905.1_ASM2269590v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA808897 1283 SAMN26134966 ASM2269590v1 Contig Hybrid assembly in Unicycler v. 2021 2022-02-21T10:01:03.700 Thailand: Bangkok urine Oxford Nanopore MinION Mahidol University 80.0x 99.31 99.48 0 99.99 0.76 GCF_022695905.1 JAKUUX01 2479 2655 2655 94 19 62 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022695925.1 HMT-120 48 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 48 5 2611179 32.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/695/925/GCA_022695925.1_ASM2269592v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA808897 1283 SAMN26134967 ASM2269592v1 Contig Hybrid assembly in Unicycler v. 2021 2022-02-21T10:01:03.720 Thailand: Bangkok skin wound Oxford Nanopore MinION Mahidol University 210.0x 99.36 99.48 0 99.99 0.57 GCF_022695925.1 JAKUUW01 2487 2668 2668 98 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022695935.1 HMT-127 371 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis 371 4 2295464 31.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/695/935/GCA_022695935.1_ASM2269593v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA808897 145391 SAMN26134969 ASM2269593v1 Contig Hybrid assembly in Unicycler v. 2021 2022-02-21T10:01:03.750 Thailand: Bangkok peritoneal fluid Oxford Nanopore MinION Mahidol University 750.0x 99.06 99.38 0.57 99.96 0.57 GCF_022695935.1 JAKUUU01 2155 2313 2313 75 19 63 1 Staphylococcus_hominis_homd_HMT_127 GCA_022699185.1 HMT-644 GC1825 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius GC1825 13 1911852 37.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/699/185/GCA_022699185.1_ASM2269918v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA818008 1338 SAMN26814094 ASM2269918v1 Contig unicycler v. v0.4.8 2022-03-20T13:08:04.736 Canada:Hamilton endotrachial aspirate from ICU patient Illumina HiSeq McMaster University 60.0x 98.28 99.88 0 100 0.21 GCF_022699185.1 JALDAU01 1820 1893 1893 37 3 32 1 Streptococcus_intermedius_homd_HMT_644 GCA_022716635.1 HMT-118 Map_107_018 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus Map_107_018 239 2530150 44.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/716/635/GCA_022716635.1_ASM2271663v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA747761 1955814 SAMN20301029 ASM2271663v1 Contig IDBA-UD v. 1.1.1 2021-07-19T10:19:13.550 Mozambique stool sample Illumina HiSeq Georgia Institute of Technology 621.2x 97.47 1.9 99.82 1.22 JAIICM01 2358 2440 2440 27 1 53 1 Dialister_invisus_homd_HMT_118 GCA_022729025.1 HMT-209 Ace_metabat.bin.4 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus Ace_metabat.bin.4 36 3418583 yes 67.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/729/025/GCA_022729025.1_ASM2272902v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA817706 1934310 SAMN26806348 ASM2272902v1 Contig GS De Novo Assembler v. 1.2.9 2022-03-19T05:04:04.443 China:Beijing freshwater lake anaerobic enchiment culture with carbon source acetate Illumina NextSeq Colledge of Environmental Sciences and Engineering, Peking University 55.9x 98.43 0.36 99.77 0.01 GCF_022729025.1 JALDWN01 3137 3280 3280 98 0 45 0 Acidovorax_ebreus_homd_HMT_209 GCA_022729045.1 HMT-209 Cit_metabat.bin.1 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus Cit_metabat.bin.1 22 3782621 yes 66.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/729/045/GCA_022729045.1_ASM2272904v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA817706 1934310 SAMN26806355 ASM2272904v1 Contig GS De Novo Assembler v. 1.2.9 2022-03-19T05:04:04.540 China:Beijing freshwater lake anaerobic enchiment culture with carbon source citrate Illumina NextSeq Colledge of Environmental Sciences and Engineering, Peking University 358.1x 99.9 0.57 99.99 0.06 GCF_022729045.1 JALDWU01 3501 3660 3660 109 1 48 1 Acidovorax_ebreus_homd_HMT_209 GCA_022749195.1 HMT-707 1648 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 1648 1 1876737 41.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/749/195/GCA_022749195.1_ASM2274919v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CI PRJNA817585 1303 SAMN06040933 ASM2274919v1 Complete Genome Unicycler v. 0.4.7 2016-11-18T15:57:17.260 USA Infective endocarditits PacBio RSII; Illumina HiSeq The University of Texas at Dallas 100.0x 94.68 99.87 0.2 100 0.08 GCF_022749195.1 1742 1881 1881 65 12 61 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_022749195.1 HMT-707 1648 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis 1648 1 1876737 41.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/749/195/GCA_022749195.1_ASM2274919v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CI PRJNA817585 1303 SAMN06040933 ASM2274919v1 Complete Genome Unicycler v. 0.4.7 2016-11-18T15:57:17.260 USA Infective endocarditits PacBio RSII; Illumina HiSeq The University of Texas at Dallas 100.0x 94.68 99.87 0.2 100 0.08 GCF_022749195.1 1742 1881 1881 65 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_022749495.1 HMT-099 ATCC 33926 Named Cultivated Oral (Abundance: Medium) HMT-099 Neisseria macacae ATCC 33926 1 2801968 51.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/749/495/GCA_022749495.1_ASM2274949v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria macacae PRJNA815950 997348 SAMN26652324 ASM2274949v1 Complete Genome PacBio SMRTlink v. v8.0 2022-03-14T07:18:04.679 not collected oropharynx of Rhesus monkey PacBio Sequel Korea University 211.7x 99.94 99.45 0.23 100 0.02 GCF_022749495.1 2519 2613 2613 19 12 62 1 Neisseria_macacae_homd_HMT_099 GCA_022750565.1 HMT-961 BCRC 81148 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-961 Faecalibacterium prausnitzii BCRC 81148 46 3243905 55.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/750/565/GCA_022750565.1_ASM2275056v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii PRJNA486247 853 SAMN09842204 ASM2275056v1 Contig SOAPdenovo v. 2.04 2018-08-16T04:09:02.850 Taiwan feces Illumina HiSeq Food Industry Research and Development Institute 448.0x 96.56 100 0 99.5 1.13 GCF_022750565.1 QVIH01 3057 3182 3182 53 9 62 1 Faecalibacterium_prausnitzii_homd_HMT_961 GCA_022762925.1 HMT-116 LR4 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis LR4 38 2606208 32.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/762/925/GCA_022762925.1_ASM2276292v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA809125 29388 SAMN26145084 ASM2276292v1 Contig SPAdes v. 3.13.1 2022-02-22T03:58:03.213 China Illumina NovaSeq The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University 200.0x 98.9 99.81 0.55 99.98 0.31 GCF_022762925.1 JAKTNF01 2507 2622 2622 51 7 56 1 Staphylococcus_capitis_homd_HMT_116 GCA_022762945.1 HMT-116 LR16 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis LR16 43 2596660 32.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/762/945/GCA_022762945.1_ASM2276294v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA809125 29388 SAMN26145085 ASM2276294v1 Contig SPAdes v. 3.13.1 2022-02-22T03:58:03.227 China Illumina NovaSeq The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University 200.0x 98.97 99.81 0.1 100 0.15 GCF_022762945.1 JAKTNE01 2491 2610 2610 51 6 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_022770005.1 HMT-021 SUG54 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis SUG54 190 1770595 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/770/005/GCA_022770005.1_ASM2277000v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA629856 1343 SAMN26525278 ASM2277000v1 Contig MEGAHIT v. v. 1.29.0 2022-03-08T16:21:06.306 Canada:Lacombe feces Illumina NovaSeq AAFC 5.0x 98.6 94.07 1.18 94.55 0.07 GCF_022770005.1 JALEJF01 1686 1747 1747 44 0 16 1 Streptococcus_vestibularis_homd_HMT_021 GCA_022772185.1 HMT-630 SUG503 Named Cultivated Oral (Abundance: Scarce) HMT-630 Bacteroides heparinolyticus SUG503 56 3403240 47.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/772/185/GCA_022772185.1_ASM2277218v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides heparinolyticus PRJNA629856 28113 SAMN26525727 ASM2277218v1 Contig MEGAHIT v. v. 1.29.0 2022-03-08T16:21:12.306 Canada:Lacombe feces Illumina NovaSeq AAFC 159.6x 97.43 97.61 0 99.47 0.04 GCF_022772185.1 JALFAM01 2691 2755 2755 13 2 48 1 Bacteroides_heparinolyticus_homd_HMT_630 GCA_022784125.1 HMT-690 SUG1006 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum SUG1006 198 2296637 34.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/784/125/GCA_022784125.1_ASM2278412v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA629856 859 SAMN26927332 ASM2278412v1 Contig MEGAHIT v. v. 1.29.0 2022-03-24T12:34:06.143 Canada:Lacombe feces Illumina NovaSeq AAFC 7.2x 96.93 97.75 0 99.18 2.69 JALFTV01 2287 2361 2361 19 2 52 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_022787675.1 HMT-690 SUG1073 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum SUG1073 180 1677681 35.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/787/675/GCA_022787675.1_ASM2278767v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA629856 859 SAMN26927399 ASM2278767v1 Contig MEGAHIT v. v. 1.29.0 2022-03-24T12:34:07.066 Canada:Lacombe feces Illumina NovaSeq AAFC 6.4x 97.2 96.63 0.05 95.84 0.94 JALFWK01 1516 1555 1555 17 1 21 0 Fusobacterium_necrophorum_homd_HMT_690 GCA_022807955.1 HMT-209 LI3 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus LI3 2 4251417 66.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/807/955/GCA_022807955.1_ASM2280795v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA818792 2952886 SAMN26879455 ASM2280795v1 Complete Genome Unicycler v. 0.4.7 2022-03-23T00:00:07.436 China: South China Botanical G soil in South China Botanical Garden PacBio South China Normal University 100.0x 99.9 1.72 100 0.09 GCF_022807955.1 3895 4109 4109 149 9 55 1 Acidovorax_ebreus_homd_HMT_209 GCA_022811505.1 HMT-120 MSA_JNM56C1 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus MSA_JNM56C1 1 2555440 32.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/811/505/GCA_022811505.1_ASM2281150v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA673344 1283 SAMN16453505 ASM2281150v1 Chromosome Bowtie v. 2 2020-10-19T11:55:57.820 India: Kalyani, West Bengal Preterm neonate delivered by C-section and admitted to the Sick Neonatal Care Un Ilumina National Institute of Biomedical Genomics 310.0x 99.33 99.48 0.14 99.98 0.05 GCF_022811505.1 2420 2596 2596 93 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_022815255.1 HMT-076 NJ2 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NJ2 44 2619647 32.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/815/255/GCA_022815255.1_ASM2281525v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA821358 1292 SAMN27067999 ASM2281525v1 Contig SPAdes v. 3.14 2022-03-30T03:58:04.636 China:Nan Jing Blood culture medium Illumina NovaSeq Nanjing Agricultural University 10.0x 99.63 99.73 0.28 100 1.09 GCF_022815255.1 JALGYR01 2552 2619 0 0 4 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_022815285.1 HMT-076 NJ1 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NJ1 35 2466249 32.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/815/285/GCA_022815285.1_ASM2281528v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri_A PRJNA821358 1292 SAMN27067998 ASM2281528v1 Contig SPAdes v. 3.14 2022-03-30T03:58:04.616 China:Nan Jing Blood culture medium Illumina NovaSeq Nanjing Agricultural University 10.0x 94.08 99.73 0 100 0.03 GCF_022815285.1 JALGYS01 2373 2490 2490 53 4 59 1 Staphylococcus_warneri_homd_HMT_076 GCA_022815345.1 HMT-076 NJ7 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NJ7 42 2579267 32.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/815/345/GCA_022815345.1_ASM2281534v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA821358 1292 SAMN27068004 ASM2281534v1 Contig SPAdes v. 3.14 2022-03-30T03:58:04.703 China:Nan Jing Blood culture medium Illumina NovaSeq Nanjing Agricultural University 10.0x 99.65 99.73 0.28 100 0.69 GCF_022815345.1 JALGYM01 2486 2545 0 0 4 54 1 Staphylococcus_warneri_homd_HMT_076 GCA_022815405.1 HMT-076 NJ6 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NJ6 42 2552797 32.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/815/405/GCA_022815405.1_ASM2281540v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA821358 1292 SAMN27068003 ASM2281540v1 Contig SPAdes v. 3.14 2022-03-30T03:58:04.690 China:Nan Jing Blood culture medium Illumina NovaSeq Nanjing Agricultural University 10.0x 99.64 99.73 0.28 100 0.7 GCF_022815405.1 JALGYN01 2452 2515 0 0 4 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_022815445.1 HMT-076 NJ3 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NJ3 40 2571928 32.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/815/445/GCA_022815445.1_ASM2281544v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA821358 1292 SAMN27068000 ASM2281544v1 Contig SPAdes v. 3.14 2022-03-30T03:58:04.653 China:Nan Jing Blood culture medium Illumina NovaSeq Nanjing Agricultural University 10.0x 99.64 99.73 0.28 100 0.69 GCF_022815445.1 JALGYQ01 2478 2543 0 0 4 60 1 Staphylococcus_warneri_homd_HMT_076 GCA_022815485.1 HMT-076 NJ5 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NJ5 43 2573752 32.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/815/485/GCA_022815485.1_ASM2281548v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA821358 1292 SAMN27068002 ASM2281548v1 Contig SPAdes v. 3.14 2022-03-30T03:58:04.680 China:Nan Jing Blood culture medium Illumina NovaSeq Nanjing Agricultural University 10.0x 99.64 99.73 0.28 100 0.69 GCF_022815485.1 JALGYO01 2482 2534 0 0 4 47 1 Staphylococcus_warneri_homd_HMT_076 GCA_022819345.1 HMT-352 TM7-037 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7-037 1 718383 43.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/819/345/GCA_022819345.1_ASM2281934v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp022819345 PRJNA784561 2899133 SAMN23492216 ASM2281934v1 Chromosome metaspades v. v3.15.3 2021-11-29T13:37:04.073 USA:Massachusetts,Boston,The F Saliva Sample Illumina Novaseq The Forsyth Institute 389.9x 65.81 0 97.51 0.35 GCF_022819345.1 727 777 777 4 3 43 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_022819365.1 HMT-352 TM7-072 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7-072 1 733310 43.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/819/365/GCA_022819365.1_ASM2281936v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp022819365 PRJNA784561 2899133 SAMN23492220 ASM2281936v1 Chromosome metaspades v. v3.15.3 2021-11-29T13:37:04.120 USA:Massachusetts,Boston,The F Saliva Sample Illumina Novaseq The Forsyth Institute 1235.3x 65.81 0 99.19 0.14 GCF_022819365.1 733 783 783 5 3 42 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_022819385.1 HMT-352 TM7-001 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7-001 1 771907 43.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/819/385/GCA_022819385.1_ASM2281938v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp900555885 PRJNA784561 2899133 SAMN23492223 ASM2281938v1 Chromosome metaspades v. v3.15.3 2021-11-29T13:37:04.153 USA:Massachusetts,Boston,The F Saliva Sample Illumina Novaseq The Forsyth Institute 431.9x 64.96 0 98.11 0.27 GCF_022819385.1 792 844 844 7 3 42 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_022828245.1 HMT-352 TM7-008 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7-008 2 725580 43.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/828/245/GCA_022828245.1_ASM2282824v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp900555675 PRJNA784561 2902632 SAMN23492221 ASM2282824v1 Contig metaspades v. v3.15.3 2021-11-29T13:37:04.130 USA:Massachusetts,Boston,The F saliva Illumina Novaseq The Forsyth Institute 2387.2x 65.81 0 98.17 0.16 GCF_022828245.1 JAJQJV01 732 782 782 5 3 42 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_022828255.1 HMT-352 TM7-075 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7-075 2 730938 43.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/828/255/GCA_022828255.1_ASM2282825v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp022828255 PRJNA784561 2902633 SAMN23492222 ASM2282825v1 Contig metaspades v. v3.15.3 2021-11-29T13:37:04.143 USA:Massachusetts,Boston,The F saliva Illumina Novaseq The Forsyth Institute 1767.0x 65.81 0.85 97.17 0.3 GCF_022828255.1 JAJQJW01 741 789 789 3 3 42 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_022828285.1 HMT-352 TM7-033 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7-033 3 718486 43.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/828/285/GCA_022828285.1_ASM2282828v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp022819345 PRJNA784561 2902628 SAMN23492215 ASM2282828v1 Contig metaspades v. v3.15.3 2021-11-29T13:37:04.060 USA:Massachusetts,Boston,The F saliva Illumina Novaseq The Forsyth Institute 2837.0x 65.81 0 97.35 1.25 GCF_022828285.1 JAJQJR01 728 778 778 4 3 43 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_022828295.1 HMT-352 TM7-057 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7-057 6 758480 43.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/828/295/GCA_022828295.1_ASM2282829v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp022828365 PRJNA784561 2902630 SAMN23492218 ASM2282829v1 Contig metaspades v. v3.15.3 2021-11-29T13:37:04.096 USA:Massachusetts,Boston,The F saliva Illumina Novaseq The Forsyth Institute 1155.8x 64.96 0 99.57 0.35 GCF_022828295.1 JAJQJT01 794 844 844 4 3 43 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_022828325.1 HMT-352 TM7-076 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7-076 4 756098 43.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/828/325/GCA_022828325.1_ASM2282832v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp022828325 PRJNA784561 2902629 SAMN23492217 ASM2282832v1 Contig metaspades v. v3.15.3 2021-11-29T13:37:04.086 USA:Massachusetts,Boston,The F saliva Illumina Novaseq The Forsyth Institute 1212.8x 65.81 0 98.18 0.33 GCF_022828325.1 JAJQJS01 778 828 828 5 3 42 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_022828365.1 HMT-352 TM7-087 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7-087 3 741912 43.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/828/365/GCA_022828365.1_ASM2282836v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp022828365 PRJNA784561 2902631 SAMN23492219 ASM2282836v1 Contig metaspades v. v3.15.3 2021-11-29T13:37:04.110 USA:Massachusetts,Boston,The F saliva Illumina Novaseq The Forsyth Institute 2735.6x 64.96 0.85 99.25 0.24 GCF_022828365.1 JAJQJU01 759 811 811 5 3 44 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_022828375.1 HMT-352 TM7-053 Phylotype Uncultivated Oral (Abundance: High) HMT-352 Nanosynbacter sp. HMT-352 TM7-053 2 755984 43.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/828/375/GCA_022828375.1_ASM2282837v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter sp022828375 PRJNA784561 2902634 SAMN23492224 ASM2282837v1 Contig metaspades v. v3.15.3 2021-11-29T13:37:04.166 USA:Massachusetts,Boston,The F saliva Illumina Novaseq The Forsyth Institute 1096.7x 64.96 0 99.13 0.27 GCF_022828375.1 JAJQJX01 762 812 812 5 3 42 0 Nanosynbacter_sp_HMT_352_homd_HMT_352 GCA_022832835.1 HMT-550 NY2010 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus NY2010 2 2965586 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/832/835/GCA_022832835.1_ASM2283283v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA821321 1280 SAMN27065448 ASM2283283v1 Complete Genome HGAP v. v3.0 2022-03-29T22:52:04.980 China: Beijing sputum PacBio RSII Beijing Institute of Microbiology and Epidemiology 100.0x 99.5 99.51 0.08 100 0.1 GCF_022832835.1 2790 2990 2990 122 16 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_022832915.1 HMT-601 C100 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis C100 7 2541647 32.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/832/915/GCA_022832915.1_ASM2283291v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA821968 1282 SAMN27161489 ASM2283291v1 Complete Genome Flye v. 2.9-b1774; Racon v. 1.4.15; Pilon v. 1.23 2022-03-31T22:11:05.614 Australia: Perth pertoneal cavity Illumina NextSeq; Oxford Nanopore MinION Curtin University 1841.0x 99.55 99.81 0 100 0.53 GCF_022832915.1 2316 2478 2478 82 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_022834915.1 HMT-605 CE91-St38 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-605 Desulfovibrio fairfieldensis CE91-St38 2 3458893 61.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/834/915/GCA_022834915.1_ASM2283491v1 d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__Desulfovibrio fairfieldensis_A PRJDB11902 2049043 SAMD00389854 ASM2283491v1 Contig Unicycler v. 0.4.8 2021-07-08T13:06:52.370 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 617.0x 99.41 0 99.98 0 BQNH01 2887 2973 2973 21 9 55 1 Desulfovibrio_fairfieldensis_homd_HMT_605 GCA_022834935.1 HMT-964 CE91-St17 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-964 Alistipes onderdonkii CE91-St17 8 3811789 57.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/834/935/GCA_022834935.1_ASM2283493v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii PRJDB11902 328813 SAMD00389856 ASM2283493v1 Contig Unicycler v. 0.4.8 2021-07-08T13:06:52.433 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 361.0x 99.76 99.28 0.48 99.99 0.53 GCF_022834935.1 BQNI01 3095 3165 3165 18 6 45 1 Alistipes_onderdonkii_homd_HMT_964 GCA_022834995.1 HMT-971 CE91-St12 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-971 Bacteroides uniformis CE91-St12 2 4839343 46.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/834/995/GCA_022834995.1_ASM2283499v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis PRJDB11902 820 SAMD00389871 ASM2283499v1 Contig Unicycler v. 0.4.8 2021-07-08T13:06:52.777 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 315.0x 98.01 99.26 0.56 99.99 0.28 GCF_022834995.1 BQNL01 4019 4110 4110 15 12 63 1 Bacteroides_uniformis_homd_HMT_971 GCA_022835015.1 HMT-072 CE91-St29 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum CE91-St29 2 2766266 59.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/835/015/GCA_022835015.1_ASM2283501v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJDB11902 43770 SAMD00389872 ASM2283501v1 Contig Unicycler v. 0.4.8 2021-07-08T13:06:52.790 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 240.0x 97.81 99.67 0.4 99.99 1.57 GCF_022835015.1 BQNM01 2543 2621 2621 9 12 56 1 Corynebacterium_striatum_homd_HMT_072 GCA_022835215.1 HMT-842 CE91-St25 Named Cultivated Skin (Abundance: Medium) HMT-842 Campylobacter ureolyticus CE91-St25 2 1863330 29.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/835/215/GCA_022835215.1_ASM2283521v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B ureolyticus PRJDB11902 827 SAMD00389886 ASM2283521v1 Contig Unicycler v. 0.4.8 2021-07-08T13:06:53.150 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 1887.0x 95.3 98.95 0.44 99.99 0.05 GCF_022835215.1 BQNW01 1857 1913 1913 5 6 44 1 Campylobacter_ureolyticus_homd_HMT_842 GCA_022835275.1 HMT-974 CE91-St3 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-974 Parabacteroides merdae CE91-St3 26 5199758 45.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/835/275/GCA_022835275.1_ASM2283527v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae PRJDB11902 46503 SAMD00389890 ASM2283527v1 Contig Unicycler v. 0.4.8 2021-07-08T13:06:53.247 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 291.0x 99.89 99.62 0.58 100 0.38 GCF_022835275.1 BQNZ01 4488 4608 4608 21 18 80 1 Parabacteroides_merdae_homd_HMT_974 GCA_022835475.1 HMT-605 CE91-St39 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-605 Desulfovibrio fairfieldensis CE91-St39 28 3483796 61.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/835/475/GCA_022835475.1_ASM2283547v1 d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__Desulfovibrio fairfieldensis_A PRJDB11902 2049043 SAMD00389907 ASM2283547v1 Contig Unicycler v. 0.4.8 2021-07-08T13:06:53.637 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 786.0x 99.41 0 99.98 0 BQOJ01 2924 3011 3011 22 9 55 1 Desulfovibrio_fairfieldensis_homd_HMT_605 GCA_022845675.1 HMT-964 CE91-St18 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-964 Alistipes onderdonkii CE91-St18 1 3812179 57.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/845/675/GCA_022845675.1_ASM2284567v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii PRJDB11902 328813 SAMD00389858 ASM2284567v1 Complete Genome Unicycler v. 0.4.8 2021-07-08T13:06:52.480 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 252.0x 99.75 99.28 0.48 99.99 0.53 GCF_022845675.1 3094 3164 3164 18 6 45 1 Alistipes_onderdonkii_homd_HMT_964 GCA_022846135.1 HMT-357 CE91-St28 Named Cultivated Oral (Abundance: Scarce) HMT-357 Pyramidobacter piscolens CE91-St28 1 2686623 59.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/846/135/GCA_022846135.1_ASM2284613v1 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter;s__Pyramidobacter piscolens PRJDB11902 638849 SAMD00389908 ASM2284613v1 Complete Genome Unicycler v. 0.4.8 2021-07-08T13:06:53.650 Japan Illumina MiSeq; PacBio Sequel Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN 436.0x 98.81 100 0 97.8 1.05 GCF_022846135.1 2464 2552 2552 20 10 57 1 Pyramidobacter_piscolens_homd_HMT_357 GCA_022846495.1 HMT-530 TP-CU411 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes TP-CU411 2 2548394 60.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/846/495/GCA_022846495.1_ASM2284649v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJDB12853 1747 SAMD00439043 ASM2284649v1 Complete Genome SMRT v. 2.3 2022-02-05T01:00:59.690 not applicable PacBio RSII Tokyo University of Pharmacy and Life Sciences 414.0x 99.92 97.86 0.09 99.93 1.39 2518 2597 2597 22 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_022869565.1 HMT-601 PartG-Sepidermidis-RM8376 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis PartG-Sepidermidis-RM8376 4 2594997 32.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/869/565/GCA_022869565.1_ASM2286956v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA605254 1282 SAMN14078798 ASM2286956v1 Complete Genome Flye v. 2.5; Pilon v. 1.23 2020-02-10T11:24:04.653 missing missing Illumina; PacBio National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute 1410.0x 99.61 99.81 0 99.99 0.11 GCF_022869565.1 2365 2525 2525 80 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_022869625.1 HMT-550 PartF-Saureus-RM8376 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus PartF-Saureus-RM8376 2 2782561 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/869/625/GCA_022869625.1_ASM2286962v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJNA605254 1280 SAMN14078797 ASM2286962v1 Complete Genome Flye v. 2.5; Pilon v. 1.23 2020-02-10T11:24:04.633 missing missing Illumina; PacBio National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute 1670.0x 99.99 99.51 0.08 100 0.11 GCF_022869625.1 2527 2721 2721 112 19 62 1 Staphylococcus_aureus_homd_HMT_550 GCA_022869645.1 HMT-669 PartJ-Nmeningitidis-RM8376 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis PartJ-Nmeningitidis-RM8376 1 2181327 51.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/869/645/GCA_022869645.1_ASM2286964v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJNA605254 487 SAMN14078801 ASM2286964v1 Complete Genome Flye v. 2.5; Pilon v. 1.23 2020-02-10T11:24:04.713 missing missing Illumina; PacBio National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute 1750.0x 99.96 99.51 0.21 99.98 0 GCF_022869645.1 2058 2168 2168 37 12 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_022870085.1 HMT-343 PartM-Axylosoxidans-RM8376 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-343 Achromobacter xylosoxidans PartM-Axylosoxidans-RM8376 1 6813185 67.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/870/085/GCA_022870085.1_ASM2287008v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter;s__Achromobacter xylosoxidans PRJNA605254 85698 SAMN14078804 ASM2287008v1 Complete Genome Flye v. 2.5; Pilon v. 1.23 2020-02-10T11:24:04.770 missing missing Illumina; PacBio National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute 570.0x 99.99 99.38 0.58 100 1.47 GCF_022870085.1 6130 6238 6238 33 10 64 1 Achromobacter_xylosoxidans_homd_HMT_343 GCA_022870765.1 HMT-801 ECB140 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-801 Enterococcus casseliflavus ECB140 1 3784641 42.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/870/765/GCA_022870765.1_ASM2287076v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D;s__Enterococcus_D entomosocium PRJNA776552 37734 SAMN22795805 ASM2287076v1 Complete Genome GS De Novo Assembler v. JUNE-2017 2021-10-31T03:46:03.757 China: Hangzhou gut PacBio RS Zhejiang University 279.0x 94.98 98.87 0.38 100 0.78 GCF_022870765.1 3425 3557 3557 56 15 60 1 Enterococcus_casseliflavus_homd_HMT_801 GCA_022871005.1 HMT-646 4177/66 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae 4177/66 1 2006535 46.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/871/005/GCA_022871005.1_ASM2287100v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA788950 504 SAMN24043407 ASM2287100v1 Complete Genome Canu v. 2.2; Flye v. 2.9-b1768; Miniasm v. 0.3-r179 2021-12-14T16:21:03.206 Norway Nose Oxford Nanopore; Illumina INRS-Centre Armand-Frappier Sante Biotechnologie 219.0x 99.99 98.87 0.23 100 0.07 GCF_022871005.1 2039 2117 2117 11 12 54 1 Kingella_kingae_homd_HMT_646 GCA_022919195.1 HMT-601 SKN25lux Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis SKN25lux 1 2539082 32.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/919/195/GCA_022919195.1_ASM2291919v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA823545 1282 SAMN27305141 ASM2291919v1 Complete Genome Flye v. 2.5 2022-04-05T08:14:05.180 Switzerland: Bern Bloodstream PacBio RS Inselspital 450.0x 99.65 99.81 0.66 99.98 0.07 GCF_022919195.1 2334 2496 2496 82 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_022922955.1 HMT-812 Hpfe079 Named Cultivated Gastrointestinal Tract (Abundance: Low) HMT-812 Helicobacter pylori Hpfe079 1 1622213 38.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/922/955/GCA_022922955.1_ASM2292295v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori_C PRJNA816422 210 SAMN26675569 ASM2292295v1 Complete Genome Unicycler v. 0.4.8 2022-03-15T11:02:06.740 China: Hengyang gastric biopsy illumina The Second Affiliated Hospital, University of South China 100.0x 96.54 99.56 0 100 0.03 GCF_022922955.1 1557 1611 1611 13 4 36 1 Helicobacter_pylori_homd_HMT_812 GCA_022936265.1 HMT-755 SALI-10 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius SALI-10 2 2261408 39.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/936/265/GCA_022936265.1_ASM2293626v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA789885 1304 SAMN24172469 ASM2293626v1 Complete Genome Pacbio Smrtpipe v. December-2021 2021-12-17T14:58:04.257 Canada Human oral cavity PacBio University of Toronto 60.0x 96.86 99.4 1.32 100 0.25 GCF_022936265.1 2024 2146 2146 35 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_023016345.1 HMT-805 TpN-CL8 Named Cultivated Pathogen (Abundance: Scarce) HMT-805 Treponema pallidum TpN-CL8 1 1139539 52.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/016/345/GCA_023016345.1_ASM2301634v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema pallidum PRJNA825109 161 SAMN27502673 ASM2301634v1 Complete Genome Snippy v. 4.3.6 2022-04-09T22:46:20.163 USA: DC, Washington cerebrospinal fluid Illumina MiSeq McGovern Medical School, Univ. of Texas Health Science Center at Houston 29.7x 99.99 99.19 0 98.91 0 GCF_023016345.1 975 1029 1029 2 6 45 1 Treponema_pallidum_homd_HMT_805 GCA_023016425.1 HMT-805 TpN-CL3 Named Cultivated Pathogen (Abundance: Scarce) HMT-805 Treponema pallidum TpN-CL3 1 1139665 52.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/016/425/GCA_023016425.1_ASM2301642v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema pallidum PRJNA825109 161 SAMN27502670 ASM2301642v1 Complete Genome Snippy v. 4.3.6 2022-04-09T22:46:20.110 USA: DC, Washington cerebrospinal fluid Illumina MiSeq McGovern Medical School, Univ. of Texas Health Science Center at Houston 32.5x 99.99 100 0 99.12 0 GCF_023016425.1 973 1027 1027 2 6 45 1 Treponema_pallidum_homd_HMT_805 GCA_023016445.1 HMT-805 TpN-CL2 Named Cultivated Pathogen (Abundance: Scarce) HMT-805 Treponema pallidum TpN-CL2 1 1139537 52.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/016/445/GCA_023016445.1_ASM2301644v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema pallidum PRJNA825109 161 SAMN27502669 ASM2301644v1 Complete Genome Snippy v. 4.3.6 2022-04-09T22:46:20.083 USA: DC, Washington cerebrospinal fluid Illumina MiSeq McGovern Medical School, Univ. of Texas Health Science Center at Houston 57.6x 99.99 100 0 99.11 0 GCF_023016445.1 974 1028 1028 2 6 45 1 Treponema_pallidum_homd_HMT_805 GCA_023078375.1 HMT-244 ATCC 49956 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-244 Roseomonas gilardii ATCC 49956 2 4624884 70.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/078/375/GCA_023078375.1_ASM2307837v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas gilardii PRJNA824703 204527 SAMN27409697 ASM2307837v1 Complete Genome Miniasm v. 0.3 2022-04-08T02:37:06.966 USA blood and other clinical sources Oxford Nanopore MinION Changwon National University 86.6x 91.94 98.21 0 97.58 0.3 GCF_023078375.1 4246 4348 4348 22 15 64 1 GCA_023093855.1 HMT-676 T1010 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-676 Proteus mirabilis T1010 1 4001374 39.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/093/855/GCA_023093855.1_ASM2309385v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus;s__Proteus mirabilis PRJNA674484 584 SAMN27177301 ASM2309385v1 Complete Genome SPAdes v. v3.12.0 2022-04-01T11:26:04.966 China:Zhejiang Illumina HiSeq City University of Hong Kong 100.0x 99.17 100 0 100 0.32 GCF_023093855.1 3587 3765 3765 71 22 84 1 Proteus_mirabilis_homd_HMT_676 GCA_023109005.1 HMT-071 S66 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus S66 21 1947688 40.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/005/GCA_023109005.1_ASM2310900v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BU PRJNA817585 1303 SAMN26876607 ASM2310900v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.847 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 173.0x 92.83 99.87 0.28 99.99 0.21 GCF_023109005.1 JALDTU01 1875 1974 1974 54 3 41 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_023109005.1 HMT-071 S66 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus S66 21 1947688 40.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/005/GCA_023109005.1_ASM2310900v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BU PRJNA817585 1303 SAMN26876607 ASM2310900v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.847 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 173.0x 92.83 99.87 0.28 99.99 0.21 GCF_023109005.1 JALDTU01 1875 1974 1974 54 3 41 1 Streptococcus_oralis_HMT_071_398_707 GCA_023109095.1 HMT-543 S63 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus S63 55 2245303 37.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/095/GCA_023109095.1_ASM2310909v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus whileyi PRJNA817585 1328 SAMN26876604 ASM2310909v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.810 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 182.0x 99.81 99.47 1.63 99.93 0.69 GCF_023109095.1 JALDTX01 2196 2287 2287 48 3 39 1 Streptococcus_anginosus_homd_HMT_543 GCA_023109175.1 HMT-576 S60 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus S60 14 1892624 37.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/175/GCA_023109175.1_ASM2310917v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA817585 76860 SAMN26876601 ASM2310917v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.770 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 132.0x 97.36 99.35 0.07 100 0.1 GCF_023109175.1 JALGPN01 1842 1920 1920 34 3 40 1 Streptococcus_constellatus_homd_HMT_576 GCA_023109195.1 HMT-707 S56 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis S56 15 2026813 41.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/195/GCA_023109195.1_ASM2310919v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BV PRJNA817585 1303 SAMN26876599 ASM2310919v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.747 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 136.0x 94.9 99.87 0.2 100 0.06 GCF_023109195.1 JALDUB01 1936 2022 2022 40 3 42 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_023109195.1 HMT-707 S56 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis S56 15 2026813 41.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/195/GCA_023109195.1_ASM2310919v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BV PRJNA817585 1303 SAMN26876599 ASM2310919v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.747 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 136.0x 94.9 99.87 0.2 100 0.06 GCF_023109195.1 JALDUB01 1936 2022 2022 40 3 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_023109215.1 HMT-576 S54 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus S54 17 1927926 38.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/215/GCA_023109215.1_ASM2310921v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA817585 76860 SAMN26876597 ASM2310921v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.720 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 102.0x 97.59 99.35 0.28 99.99 0.09 GCF_023109215.1 JALGPP01 1899 1977 1977 31 3 43 1 Streptococcus_constellatus_homd_HMT_576 GCA_023109235.1 HMT-677 S53 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis S53 24 1845105 40.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/235/GCA_023109235.1_ASM2310923v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_DA PRJNA817585 28037 SAMN26876596 ASM2310923v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.707 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 221.0x 95.23 99.78 0.2 100 0.02 GCF_023109235.1 JALDUC01 1753 1851 1851 56 3 38 1 Streptococcus_mitis_homd_HMT_677 GCA_023109275.1 HMT-707 S51 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis S51 12 2001251 41.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/275/GCA_023109275.1_ASM2310927v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CY PRJNA817585 1303 SAMN26876594 ASM2310927v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.680 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 70.0x 95.23 99.83 0.2 100 0.08 GCF_023109275.1 JALDUE01 1901 1991 1991 48 2 39 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_023109275.1 HMT-707 S51 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis S51 12 2001251 41.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/275/GCA_023109275.1_ASM2310927v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CY PRJNA817585 1303 SAMN26876594 ASM2310927v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.680 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 70.0x 95.23 99.83 0.2 100 0.08 GCF_023109275.1 JALDUE01 1901 1991 1991 48 2 39 1 Streptococcus_oralis_HMT_071_398_707 GCA_023109295.1 HMT-576 S55 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus S55 23 1993590 37.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/295/GCA_023109295.1_ASM2310929v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA817585 76860 SAMN26876598 ASM2310929v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.730 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 225.0x 97.41 99.35 0 99.99 0.18 GCF_023109295.1 JALGPO01 1931 2013 2013 37 3 41 1 Streptococcus_constellatus_homd_HMT_576 GCA_023109315.1 HMT-071 S50 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus S50 18 2005270 40.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/315/GCA_023109315.1_ASM2310931v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BS PRJNA817585 1303 SAMN26876593 ASM2310931v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.667 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 64.0x 92.8 99.87 0.4 100 0.05 GCF_023109315.1 JALDUF01 1958 2095 2095 90 3 43 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_023109315.1 HMT-071 S50 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus S50 18 2005270 40.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/315/GCA_023109315.1_ASM2310931v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BS PRJNA817585 1303 SAMN26876593 ASM2310931v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.667 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 64.0x 92.8 99.87 0.4 100 0.05 GCF_023109315.1 JALDUF01 1958 2095 2095 90 3 43 1 Streptococcus_oralis_HMT_071_398_707 GCA_023109335.1 HMT-755 S48 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius S48 27 2200669 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/335/GCA_023109335.1_ASM2310933v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA817585 1304 SAMN26876591 ASM2310933v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.640 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 174.0x 95.85 99.9 1.46 100 0.06 GCF_023109335.1 JALDUH01 2013 2094 2094 34 3 43 1 Streptococcus_salivarius_homd_HMT_755 GCA_023109355.1 HMT-755 S49 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius S49 26 2345487 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/355/GCA_023109355.1_ASM2310935v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA817585 1304 SAMN26876592 ASM2310935v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.653 USA: Mississippi Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 162.0x 96.12 99.9 0.88 100 0.23 GCF_023109355.1 JALDUG01 2117 2204 2204 39 3 44 1 Streptococcus_salivarius_homd_HMT_755 GCA_023109395.1 HMT-644 S45 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius S45 5 1917252 37.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/395/GCA_023109395.1_ASM2310939v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA817585 1338 SAMN26876589 ASM2310939v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.603 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 56.0x 98.36 100 0 100 0.19 GCF_023109395.1 JALGPQ01 1878 1954 1954 36 3 36 1 Streptococcus_intermedius_homd_HMT_644 GCA_023109405.1 HMT-071 S44 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus S44 15 1880091 41.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/405/GCA_023109405.1_ASM2310940v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA817585 1303 SAMN26876588 ASM2310940v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.590 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 48.0x 92.78 99.87 0.2 100 0.06 GCF_023109405.1 JALDUJ01 1847 1950 1950 65 3 34 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_023109405.1 HMT-071 S44 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus S44 15 1880091 41.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/405/GCA_023109405.1_ASM2310940v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_F PRJNA817585 1303 SAMN26876588 ASM2310940v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.590 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 48.0x 92.78 99.87 0.2 100 0.06 GCF_023109405.1 JALDUJ01 1847 1950 1950 65 3 34 1 Streptococcus_oralis_HMT_071_398_707 GCA_023109435.1 HMT-644 S42 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius S42 15 1907506 37.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/435/GCA_023109435.1_ASM2310943v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA817585 1338 SAMN26876586 ASM2310943v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.560 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 58.0x 98.37 99.88 0 100 0.23 GCF_023109435.1 JALGPR01 1855 1936 1936 35 3 42 1 Streptococcus_intermedius_homd_HMT_644 GCA_023109445.1 HMT-543 S41 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus S41 21 1886050 38.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/445/GCA_023109445.1_ASM2310944v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA817585 1328 SAMN26876585 ASM2310944v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.550 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 61.0x 95.68 100 0.83 99.99 0.18 GCF_023109445.1 JALDUK01 1825 1903 1903 36 3 38 1 Streptococcus_anginosus_homd_HMT_543 GCA_023109465.1 HMT-071 S40 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus S40 40 1911372 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/465/GCA_023109465.1_ASM2310946v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_E PRJNA817585 1303 SAMN26876584 ASM2310946v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.537 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 51.0x 93.23 99.77 0.86 99.99 0.03 GCF_023109465.1 JALDUL01 1833 1906 1906 37 3 32 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_023109465.1 HMT-071 S40 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus S40 40 1911372 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/465/GCA_023109465.1_ASM2310946v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_E PRJNA817585 1303 SAMN26876584 ASM2310946v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.537 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 51.0x 93.23 99.77 0.86 99.99 0.03 GCF_023109465.1 JALDUL01 1833 1906 1906 37 3 32 1 Streptococcus_oralis_HMT_071_398_707 GCA_023109515.1 HMT-677 S39 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis S39 12 1987690 40.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/515/GCA_023109515.1_ASM2310951v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CS PRJNA817585 28037 SAMN26876583 ASM2310951v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.523 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 57.0x 94.65 99.82 0.2 99.99 0.37 GCF_023109515.1 JALDUM01 1943 2032 2032 46 3 39 1 Streptococcus_mitis_homd_HMT_677 GCA_023109545.1 HMT-622 S36 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii S36 11 2200426 40.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/545/GCA_023109545.1_ASM2310954v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA817585 1302 SAMN26876580 ASM2310954v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.470 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 101.0x 97.58 100 0.37 100 0.29 GCF_023109545.1 JALDUO01 2101 2211 2211 65 2 42 1 Streptococcus_gordonii_homd_HMT_622 GCA_023109575.1 HMT-622 S35 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii S35 13 2183661 40.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/575/GCA_023109575.1_ASM2310957v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA817585 1302 SAMN26876579 ASM2310957v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.457 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 45.0x 97.39 100 0.37 100 0.37 GCF_023109575.1 JALDUP01 2043 2115 2115 27 2 42 1 Streptococcus_gordonii_homd_HMT_622 GCA_023109585.1 HMT-686 S38 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans S38 17 2041017 36.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/585/GCA_023109585.1_ASM2310958v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA817585 1309 SAMN26876582 ASM2310958v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.497 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 203.0x 99.27 100 0.56 100 0.2 GCF_023109585.1 JALDUN01 1924 2029 2029 58 3 43 1 Streptococcus_mutans_homd_HMT_686 GCA_023109615.1 HMT-576 S34 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus S34 15 1818626 38.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/615/GCA_023109615.1_ASM2310961v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA817585 76860 SAMN26876578 ASM2310961v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.443 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 61.0x 97.87 98.91 0 99.97 0.09 GCF_023109615.1 JALGPS01 1797 1868 1868 33 3 34 1 Streptococcus_constellatus_homd_HMT_576 GCA_023109655.1 HMT-071 S33 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus S33 13 1868427 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/655/GCA_023109655.1_ASM2310965v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA817585 1303 SAMN26876577 ASM2310965v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.433 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 73.0x 93.31 99.87 0.2 99.99 0.05 GCF_023109655.1 JALDUQ01 1768 1845 1845 40 3 33 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_023109655.1 HMT-071 S33 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus S33 13 1868427 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/655/GCA_023109655.1_ASM2310965v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA817585 1303 SAMN26876577 ASM2310965v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.433 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 73.0x 93.31 99.87 0.2 99.99 0.05 GCF_023109655.1 JALDUQ01 1768 1845 1845 40 3 33 1 Streptococcus_oralis_HMT_071_398_707 GCA_023109675.1 HMT-411 S32 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis S32 38 2203102 41.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/675/GCA_023109675.1_ASM2310967v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA817585 1318 SAMN26876576 ASM2310967v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.420 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 181.0x 94.15 100 0.8 99.99 0 GCF_023109675.1 JALDUR01 2141 2260 2260 69 3 46 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_023109685.1 HMT-644 S30 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius S30 12 2041358 37.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/685/GCA_023109685.1_ASM2310968v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA817585 1338 SAMN26876574 ASM2310968v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.390 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 235.0x 98.38 99.88 0 100 0.15 GCF_023109685.1 JALGPT01 2012 2095 2095 38 3 41 1 Streptococcus_intermedius_homd_HMT_644 GCA_023109815.1 HMT-758 S24 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis S24 8 2328905 43.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/815/GCA_023109815.1_ASM2310981v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA817585 1305 SAMN26876568 ASM2310981v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.313 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 58.0x 96.9 100 0 100 0.18 GCF_023109815.1 JALDUY01 2220 2297 2297 29 3 44 1 Streptococcus_sanguinis_homd_HMT_758 GCA_023109865.1 HMT-622 S19 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii S19 16 2250098 40.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/865/GCA_023109865.1_ASM2310986v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA817585 1302 SAMN26876563 ASM2310986v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.243 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 226.0x 95.43 100 0 99.99 0.07 GCF_023109865.1 JALDVB01 2142 2215 2215 30 2 40 1 Streptococcus_gordonii_homd_HMT_622 GCA_023109885.1 HMT-622 S21 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii S21 15 2249499 40.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/885/GCA_023109885.1_ASM2310988v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA817585 1302 SAMN26876565 ASM2310988v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.270 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 240.0x 95.43 100 0 99.99 0.07 GCF_023109885.1 JALDUZ01 2144 2218 2218 30 2 41 1 Streptococcus_gordonii_homd_HMT_622 GCA_023109915.1 HMT-644 S23 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius S23 6 1945664 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/915/GCA_023109915.1_ASM2310991v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA817585 1338 SAMN26876567 ASM2310991v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.296 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 242.0x 98.36 99.88 0.07 100 0.24 GCF_023109915.1 JALGPU01 1870 1951 1951 36 3 41 1 Streptococcus_intermedius_homd_HMT_644 GCA_023109935.1 HMT-622 S18 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii S18 8 2092254 40.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/935/GCA_023109935.1_ASM2310993v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA817585 1302 SAMN26876562 ASM2310993v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.227 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 38.0x 96.15 100 0.37 99.99 0.19 GCF_023109935.1 JALDVC01 1987 2053 2053 26 3 36 1 Streptococcus_gordonii_homd_HMT_622 GCA_023109975.1 HMT-543 S16 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus S16 16 1868094 38.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/109/975/GCA_023109975.1_ASM2310997v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA817585 1328 SAMN26876560 ASM2310997v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.200 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 55.0x 95.43 100 0.07 100 0.14 GCF_023109975.1 JALDVE01 1819 1899 1899 38 3 38 1 Streptococcus_anginosus_homd_HMT_543 GCA_023110055.1 HMT-707 S14 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis S14 8 1990034 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/055/GCA_023110055.1_ASM2311005v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BY PRJNA817585 1303 SAMN26876558 ASM2311005v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.160 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 162.0x 94.92 99.87 0.4 99.99 0.01 GCF_023110055.1 JALDVG01 1858 1989 1989 84 2 44 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_023110055.1 HMT-707 S14 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis S14 8 1990034 41.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/055/GCA_023110055.1_ASM2311005v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BY PRJNA817585 1303 SAMN26876558 ASM2311005v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:05.160 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 162.0x 94.92 99.87 0.4 99.99 0.01 GCF_023110055.1 JALDVG01 1858 1989 1989 84 2 44 1 Streptococcus_oralis_HMT_071_398_707 GCA_023110145.1 HMT-021 S06 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis S06 53 2091596 39.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/145/GCA_023110145.1_ASM2311014v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA817585 1343 SAMN26876550 ASM2311014v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.930 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 56.0x 97.48 99.56 0.25 99.99 0.01 GCF_023110145.1 JALDVO01 2000 2079 2079 40 3 35 1 Streptococcus_vestibularis_homd_HMT_021 GCA_023110155.1 HMT-543 S08 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus S08 14 1870258 38.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/155/GCA_023110155.1_ASM2311015v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA817585 1328 SAMN26876553 ASM2311015v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.973 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 64.0x 95.43 100 0.07 100 0.14 GCF_023110155.1 JALDVL01 1820 1900 1900 38 3 38 1 Streptococcus_anginosus_homd_HMT_543 GCA_023110175.1 HMT-411 S07 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis S07 37 2191303 41.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/175/GCA_023110175.1_ASM2311017v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA817585 1318 SAMN26876551 ASM2311017v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.943 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 211.0x 94.1 100 0.51 100 0 GCF_023110175.1 JALDVN01 2126 2212 2212 38 3 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_023110255.1 HMT-644 S01 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius S01 7 2091190 37.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/255/GCA_023110255.1_ASM2311025v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA817585 1338 SAMN26876545 ASM2311025v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.860 USA: Texas Endocarditis Illumina NextSeq 500 The University of Texas at Dallas 59.0x 98.56 99.53 0.35 100 0.97 GCF_023110255.1 JALGPV01 2000 2082 2082 40 3 38 1 Streptococcus_intermedius_homd_HMT_644 GCA_023110315.1 HMT-677 O7-2 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis O7-2 23 2013829 40.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/315/GCA_023110315.1_ASM2311031v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_Y PRJNA817585 28037 SAMN26876543 ASM2311031v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.837 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 173.0x 94.76 99.69 0.25 99.99 0.01 GCF_023110315.1 JALDVU01 1934 2028 2028 50 3 40 1 Streptococcus_mitis_homd_HMT_677 GCA_023110325.1 HMT-707 O4-3 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis O4-3 21 2048158 41.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/325/GCA_023110325.1_ASM2311032v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA817585 1303 SAMN26876539 ASM2311032v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.780 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 180.0x 94.77 99.87 0.2 100 0.02 GCF_023110325.1 JALDVY01 1975 2064 2064 40 3 45 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_023110325.1 HMT-707 O4-3 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis O4-3 21 2048158 41.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/325/GCA_023110325.1_ASM2311032v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA817585 1303 SAMN26876539 ASM2311032v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.780 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 180.0x 94.77 99.87 0.2 100 0.02 GCF_023110325.1 JALDVY01 1975 2064 2064 40 3 45 1 Streptococcus_oralis_HMT_071_398_707 GCA_023110355.1 HMT-021 O4-4 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis O4-4 49 1882797 39.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/355/GCA_023110355.1_ASM2311035v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA817585 1343 SAMN26876540 ASM2311035v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.793 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 296.0x 98.67 99.96 0.15 99.98 0.07 GCF_023110355.1 JALDVX01 1802 1892 1892 43 3 43 1 Streptococcus_vestibularis_homd_HMT_021 GCA_023110375.1 HMT-677 O7-1 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis O7-1 29 1969298 39.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/375/GCA_023110375.1_ASM2311037v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CI PRJNA817585 28037 SAMN26876542 ASM2311037v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.823 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 25.0x 95.01 99.73 0.44 99.98 0.14 GCF_023110375.1 JALDVV01 1927 2038 2038 66 3 41 1 Streptococcus_mitis_homd_HMT_677 GCA_023110385.1 HMT-707 O5 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis O5 17 1951473 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/385/GCA_023110385.1_ASM2311038v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CU PRJNA817585 1303 SAMN26876541 ASM2311038v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.807 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 174.0x 94.83 99.87 0.2 100 0.03 GCF_023110385.1 JALDVW01 1806 1890 1890 39 3 41 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_023110385.1 HMT-707 O5 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis O5 17 1951473 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/385/GCA_023110385.1_ASM2311038v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CU PRJNA817585 1303 SAMN26876541 ASM2311038v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.807 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 174.0x 94.83 99.87 0.2 100 0.03 GCF_023110385.1 JALDVW01 1806 1890 1890 39 3 41 1 Streptococcus_oralis_HMT_071_398_707 GCA_023110415.1 HMT-677 O4-1 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis O4-1 9 1871204 40.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/415/GCA_023110415.1_ASM2311041v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA817585 28037 SAMN26876537 ASM2311041v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.753 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 194.0x 95.36 99.78 0.2 99.98 0 GCF_023110415.1 JALDWA01 1756 1851 1851 48 3 43 1 Streptococcus_mitis_homd_HMT_677 GCA_023110445.1 HMT-677 O4-2 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis O4-2 9 1871377 40.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/445/GCA_023110445.1_ASM2311044v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA817585 28037 SAMN26876538 ASM2311044v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.767 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 189.0x 95.36 99.78 0.2 99.98 0 GCF_023110445.1 JALDVZ01 1756 1852 1852 48 3 44 1 Streptococcus_mitis_homd_HMT_677 GCA_023110515.1 HMT-677 O2-1 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis O2-1 14 1983600 40.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/515/GCA_023110515.1_ASM2311051v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AD PRJNA817585 28037 SAMN26876532 ASM2311051v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.687 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 185.0x 94.16 99.82 0.27 100 0.01 GCF_023110515.1 JALDWD01 1883 1983 1983 53 3 43 1 Streptococcus_mitis_homd_HMT_677 GCA_023110535.1 HMT-398 O1-4 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani O1-4 18 1901479 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/535/GCA_023110535.1_ASM2311053v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA817585 1303 SAMN26876531 ASM2311053v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.677 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 46.0x 95.84 99.47 0.2 99.94 0.08 GCF_023110535.1 JALDWE01 1818 1900 1900 38 3 40 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_023110535.1 HMT-398 O1-4 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani O1-4 18 1901479 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/535/GCA_023110535.1_ASM2311053v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA817585 1303 SAMN26876531 ASM2311053v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.677 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 46.0x 95.84 99.47 0.2 99.94 0.08 GCF_023110535.1 JALDWE01 1818 1900 1900 38 3 40 1 Streptococcus_oralis_HMT_071_398_707 GCA_023110555.1 HMT-398 O1-3 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani O1-3 18 1902441 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/555/GCA_023110555.1_ASM2311055v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA817585 1303 SAMN26876530 ASM2311055v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.663 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 72.0x 95.84 99.47 0.2 99.94 0.08 GCF_023110555.1 JALDWF01 1817 1899 1899 38 3 40 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_023110555.1 HMT-398 O1-3 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani O1-3 18 1902441 41.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/555/GCA_023110555.1_ASM2311055v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA817585 1303 SAMN26876530 ASM2311055v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.663 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 72.0x 95.84 99.47 0.2 99.94 0.08 GCF_023110555.1 JALDWF01 1817 1899 1899 38 3 40 1 Streptococcus_oralis_HMT_071_398_707 GCA_023110605.1 HMT-578 O1-1 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus O1-1 18 1971746 42.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/110/605/GCA_023110605.1_ASM2311060v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_I PRJNA817585 45634 SAMN26876528 ASM2311060v1 Scaffold SPAdes v. 3.13 2022-03-22T18:07:04.630 USA: Texas Oral Illumina NextSeq 500 The University of Texas at Dallas 172.0x 95.18 100 0 99.96 0.02 GCF_023110605.1 JALDWH01 1864 1938 1938 30 3 40 1 Streptococcus_cristatus_homd_HMT_578 GCA_023147335.1 HMT-783 EYE_437 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii EYE_437 19 2561832 58.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/147/335/GCA_023147335.1_ASM2314733v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA741708 1979527 SAMN19899832 ASM2314733v1 Scaffold SPAdes v. 3.13.0 2021-06-27T03:54:40.417 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 96.22 99.71 2.64 99.99 4.64 GCF_023147335.1 JAHXPF01 2451 2524 2524 10 8 54 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_023147355.1 HMT-076 EYE_450 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri EYE_450 40 2637367 32.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/147/355/GCA_023147355.1_ASM2314735v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA741708 1292 SAMN19899833 ASM2314735v1 Scaffold SPAdes v. 3.13.0 2021-06-27T03:54:40.433 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 99.63 99.73 0.03 100 0.51 GCF_023147355.1 JAHXPG01 2550 2669 2669 51 8 59 1 Staphylococcus_warneri_homd_HMT_076 GCA_023147545.1 HMT-783 EYE_346 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii EYE_346 12 2414960 58.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/147/545/GCA_023147545.1_ASM2314754v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA741708 1979527 SAMN19899827 ASM2314754v1 Contig SPAdes v. 3.13.0 2021-06-27T03:54:40.350 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 96.11 99.78 0 99.99 0.03 GCF_023147545.1 JAHXPA01 2281 2347 2347 9 5 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_023147965.1 HMT-111 EYE_66 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra EYE_66 16 1650841 28.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/147/965/GCA_023147965.1_ASM2314796v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA741708 33033 SAMN19899812 ASM2314796v1 Contig SPAdes v. 3.13.0 2021-06-27T03:54:40.140 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 97.44 98.48 0.61 99.59 1.03 GCF_023147965.1 JAHXOL01 1501 1579 1579 35 5 37 1 Parvimonas_micra_homd_HMT_111 GCA_023148065.1 HMT-111 EYE_30 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra EYE_30 17 1653180 28.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/148/065/GCA_023148065.1_ASM2314806v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA741708 33033 SAMN19899808 ASM2314806v1 Scaffold SPAdes v. 3.13.0 2021-06-27T03:54:39.977 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 97.44 98.48 0.61 99.59 1.03 GCF_023148065.1 JAHXOH01 1503 1586 1586 35 7 40 1 Parvimonas_micra_homd_HMT_111 GCA_023148105.1 HMT-111 EYE_29 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra EYE_29 14 1649822 28.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/148/105/GCA_023148105.1_ASM2314810v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA741708 33033 SAMN19899807 ASM2314810v1 Scaffold SPAdes v. 3.13.0 2021-06-27T03:54:39.963 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 97.44 98.48 0.61 99.56 1.05 GCF_023148105.1 JAHXOG01 1502 1584 1584 35 8 38 1 Parvimonas_micra_homd_HMT_111 GCA_023148135.1 HMT-602 EYE_27 Named Cultivated Oral (Abundance: Scarce) HMT-602 Slackia exigua EYE_27 12 2108470 62.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/148/135/GCA_023148135.1_ASM2314813v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia;s__Slackia exigua PRJNA741708 84109 SAMN19899805 ASM2314813v1 Scaffold SPAdes v. 3.13.0 2021-06-27T03:54:39.940 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 98.38 100 0 99.72 1.86 GCF_023148135.1 JAHXOE01 1762 1832 1832 13 6 50 1 Slackia_exigua_homd_HMT_602 GCA_023148185.1 HMT-643 EYE_26 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia EYE_26 52 2635238 43.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/148/185/GCA_023148185.1_ASM2314818v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJNA741708 28131 SAMN19899804 ASM2314818v1 Contig SPAdes v. 3.13.0 2021-06-27T03:54:39.927 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 96.52 99.32 0 99.96 0.04 GCF_023148185.1 JAHXOD01 2239 2303 2303 10 7 46 1 Prevotella_intermedia_homd_HMT_643 GCA_023148225.1 HMT-111 EYE_25 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra EYE_25 17 1658119 28.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/148/225/GCA_023148225.1_ASM2314822v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA741708 33033 SAMN19899803 ASM2314822v1 Scaffold SPAdes v. 3.13.0 2021-06-27T03:54:39.913 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 97.44 98.48 0.61 99.6 1.08 GCF_023148225.1 JAHXOC01 1508 1591 1591 35 8 39 1 Parvimonas_micra_homd_HMT_111 GCA_023148335.1 HMT-062 EYE_769 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-062 Corynebacterium simulans EYE_769 23 2564029 59.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/148/335/GCA_023148335.1_ASM2314833v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium simulans PRJNA741708 146827 SAMN19899799 ASM2314833v1 Scaffold SPAdes v. 3.13.0 2021-06-27T03:54:39.857 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 99.78 0.04 100 0.16 GCF_023148335.1 JAHXNY01 2388 2456 2456 8 7 52 1 Corynebacterium_simulans_homd_HMT_062 GCA_023148415.1 HMT-076 EYE_117 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri EYE_117 23 2552276 32.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/148/415/GCA_023148415.1_ASM2314841v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA741708 1292 SAMN19899796 ASM2314841v1 Contig SPAdes v. 3.13.0 2021-06-27T03:54:39.817 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 99.62 99.73 0.1 100 0.07 GCF_023148415.1 JAHXNV01 2475 2593 2593 49 9 59 1 Staphylococcus_warneri_homd_HMT_076 GCA_023148425.1 HMT-076 EYE_410 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri EYE_410 22 2552706 32.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/148/425/GCA_023148425.1_ASM2314842v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA741708 1292 SAMN19899795 ASM2314842v1 Contig SPAdes v. 3.13.0 2021-06-27T03:54:39.800 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 99.62 99.73 0.1 100 0.07 GCF_023148425.1 JAHXNU01 2480 2597 2597 49 9 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_023148985.1 HMT-116 EYE_742 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis EYE_742 27 2406708 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/148/985/GCA_023148985.1_ASM2314898v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA741708 29388 SAMN19899776 ASM2314898v1 Contig SPAdes v. 3.13.0 2021-06-27T03:54:39.537 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 99.57 99.81 0.06 99.99 0.29 GCF_023148985.1 JAHXNB01 2377 2501 2501 57 8 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_023149075.1 HMT-076 EYE_411 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri EYE_411 23 2609711 32.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/149/075/GCA_023149075.1_ASM2314907v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA741708 1292 SAMN19899770 ASM2314907v1 Scaffold SPAdes v. 3.13.0 2021-06-27T03:54:39.450 China:Shanxi ocular surface of healthy person Illumina China CDC 200.0x 99.62 99.73 0.1 100 0.39 GCF_023149075.1 JAHXMV01 2528 2650 2650 53 9 59 1 Staphylococcus_warneri_homd_HMT_076 GCA_023167545.1 HMT-576 CCUG 24889 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus CCUG 24889 1 1901581 38.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/167/545/GCA_023167545.1_ASM2316754v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJDB3105 184246 SAMD00019675 ASM2316754v1 Complete Genome The SMRT Analysis HGAP v. 2.1.1 2022-04-05T01:02:11.690 unkown PacBio National Center for Global Health and Medicine 99.99 99 0.35 99.98 0.12 GCF_023167545.1 1802 1947 1947 73 12 59 1 Streptococcus_constellatus_homd_HMT_576 GCA_023169525.1 HMT-543 CCUG 27928 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus CCUG 27928 1 1955308 38.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/169/525/GCA_023169525.1_ASM2316952v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJDB6808 1328 SAMD00114172 ASM2316952v1 Complete Genome SPAdes v. 3.11.1 2022-04-05T01:20:26.120 missing Nanopore; Illumina Department of Infectious Diseases, National Center for Global Health and Medicine 65.0x 99.99 100 0 99.97 0.04 GCF_023169525.1 1854 1982 1982 56 12 59 1 Streptococcus_anginosus_homd_HMT_543 GCA_023169925.1 HMT-043 K20 Named Cultivated Oral (Abundance: Medium) HMT-043 Actinomyces oris clade-043 K20 1 3119201 68.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/169/925/GCA_023169925.1_ASM2316992v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_A PRJDB13022 871541 SAMD00442649 ASM2316992v1 Complete Genome Unicycler v. 0.4.4 2022-03-04T01:00:57.093 Japan:Osaka Illumina MiSeq; Oxford Nanopore MinION Actinomyces oris 25.0x 94.48 100 0.47 100 0.16 GCF_023169925.1 2539 2614 2614 13 9 52 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_023169925.1 HMT-043 K20 Named Cultivated Oral (Abundance: Medium) HMT-043 Actinomyces oris clade-043 K20 1 3119201 68.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/169/925/GCA_023169925.1_ASM2316992v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris_A PRJDB13022 871541 SAMD00442649 ASM2316992v1 Complete Genome Unicycler v. 0.4.4 2022-03-04T01:00:57.093 Japan:Osaka Illumina MiSeq; Oxford Nanopore MinION Actinomyces oris 25.0x 94.48 100 0.47 100 0.16 GCF_023169925.1 2539 2614 2614 13 9 52 1 Actinomyces_oris_clade_043_homd_HMT_043 GCA_023170065.1 HMT-176 ATCC 27039 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii ATCC 27039 1 3204077 67.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/170/065/GCA_023170065.1_ASM2317006v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJDB13000 1655 SAMD00442891 ASM2317006v1 Complete Genome Cutadapt v. 1.11; Nanofilt v. 2.0.0 2022-04-08T01:01:13.953 not applicable Illumina MiSeq; Nanopore Depertment of Bacteriology, Osaka Dental University. 444.0x 98.57 100 0.47 99.97 0.12 GCF_023170065.1 2661 2738 2738 15 9 52 1 Actinomyces_naeslundii_homd_HMT_176 GCA_023195735.1 HMT-865 SK Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-865 Kluyvera ascorbata SK 2 5062542 54.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/195/735/GCA_023195735.1_ASM2319573v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera;s__Kluyvera ascorbata PRJNA827918 51288 SAMN27625780 ASM2319573v1 Complete Genome Unicycler v. 0.4.8 2022-04-19T03:15:05.952 Pacific Ocean Pacific Ocean Illumina First Institute of Oceanography 96.3x 98.65 99.67 0.39 100 0 GCF_023195735.1 4712 4962 4962 130 25 94 1 Kluyvera_ascorbata_homd_HMT_865 GCA_023242235.1 HMT-862 W13 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-862 Bifidobacterium longum W13 1 2335916 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/242/235/GCA_023242235.1_ASM2324223v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum PRJNA679440 216816 SAMN16815453 ASM2324223v1 Complete Genome AllPaths v. 2.3 2020-11-17T06:38:04.557 China:Tianjin baby feces PacBio RS II Tianjin University of Science and Technology 12.0x 98.95 99.54 0 99.97 0 GCF_023242235.1 1914 1991 1991 12 8 56 1 Bifidobacterium_longum_homd_HMT_862 GCA_023277465.1 HMT-127 WiKim0113 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis WiKim0113 1 2239213 31.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/277/465/GCA_023277465.1_ASM2327746v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA750864 145391 SAMN20499013 ASM2327746v1 Complete Genome PacBio SMRT Analysis v. 2.3.0 2021-07-30T01:17:07.690 South Korea kimchi PacBio RSII World Institute of Kimchi 347.5x 99.16 99.3 0.57 99.98 0.03 GCF_023277465.1 2116 2266 2266 68 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_023277545.1 HMT-829 JNFY28 Named Cultivated Vaginal (Abundance: High) HMT-829 Gardnerella vaginalis JNFY28 1 1542082 42.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/277/545/GCA_023277545.1_ASM2327754v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium vaginale PRJNA761238 2702 SAMN21246409 ASM2327754v1 Complete Genome Celera Assembler v. canu 2021-09-07T04:00:08.120 China: Shandong vaginal secretion Oxford Nanopore PromethION Shandong University 1.0x 96.97 99.57 0 99.32 0.59 1387 1451 1451 12 6 45 1 Gardnerella_vaginalis_homd_HMT_829 GCA_023277565.1 HMT-846 JNFY17 Named Cultivated Vaginal (Abundance: High) HMT-846 Gardnerella piotii JNFY17 1 1595814 42.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/277/565/GCA_023277565.1_ASM2327756v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium piotii PRJNA761238 2702 SAMN21246408 ASM2327756v1 Complete Genome Celera Assembler v. canu 2021-09-07T04:00:08.107 China: Shandong vaginal secretion Oxford Nanopore PromethION Shandong University 1.0x 89.63 100 0 100 0.29 GCF_023277565.1 1232 1296 1296 12 6 45 1 Gardnerella_piotii_homd_HMT_846 GCA_023277585.1 HMT-846 JNFY15 Named Cultivated Vaginal (Abundance: High) HMT-846 Gardnerella piotii JNFY15 1 1541442 42.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/277/585/GCA_023277585.1_ASM2327758v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium piotii PRJNA761238 2792977 SAMN21246407 ASM2327758v1 Complete Genome Celera Assembler v. canu 2021-09-07T04:00:08.090 China: Shandong vaginal secretion Oxford Nanopore PromethION Shandong University 1.0x 96.68 100 0.15 99.91 0.26 GCF_023277585.1 1160 1224 1224 12 6 45 1 Gardnerella_piotii_homd_HMT_846 GCA_023277625.1 HMT-829 JNFY13 Named Cultivated Vaginal (Abundance: High) HMT-829 Gardnerella vaginalis JNFY13 1 1682566 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/277/625/GCA_023277625.1_ASM2327762v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium vaginale PRJNA761238 2702 SAMN21246405 ASM2327762v1 Complete Genome Celera Assembler v. canu 2021-09-07T04:00:08.063 China: Shandong vaginal secretion Oxford Nanopore PromethION Shandong University 1.0x 98.33 100 0 100 0.3 GCF_023277625.1 1286 1356 1356 18 6 45 1 Gardnerella_vaginalis_homd_HMT_829 GCA_023277665.1 HMT-829 JNFY9 Named Cultivated Vaginal (Abundance: High) HMT-829 Gardnerella vaginalis JNFY9 1 1640523 41.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/277/665/GCA_023277665.1_ASM2327766v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium vaginale PRJNA761238 2702 SAMN21246403 ASM2327766v1 Complete Genome Celera Assembler v. canu 2021-09-07T04:00:08.033 China: Shandong vaginal secretion Oxford Nanopore PromethION Shandong University 1.0x 98.34 100 0.15 99.99 0.41 GCF_023277665.1 1241 1311 1311 18 6 45 1 Gardnerella_vaginalis_homd_HMT_829 GCA_023277705.1 HMT-868 JNFY3 Named Cultivated Vaginal (Abundance: High) HMT-868 Gardnerella swidsinskii JNFY3 1 1602355 42.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/277/705/GCA_023277705.1_ASM2327770v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium swidsinskii PRJNA761238 2792979 SAMN21246401 ASM2327770v1 Complete Genome Celera Assembler v. canu 2021-09-07T04:00:08.003 China: Shandong vaginal secretion Oxford Nanopore PromethION Shandong University 1.0x 98.23 100 0.15 99.99 0.78 GCF_023277705.1 1239 1305 1305 14 6 45 1 Gardnerella_swidsinskii_homd_HMT_868 GCA_023278185.1 HMT-597 USDA 76 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-597 Bradyrhizobium elkanii USDA 76 2 9518205 63.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/278/185/GCA_023278185.1_ASM2327818v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii PRJNA686128 398525 SAMN17108307 ASM2327818v1 Complete Genome HGAP v. 2 2020-12-17T22:35:11.066 USA: California root nodules PacBio RS VEIL Bradyrhizobium group 200.0x 99.98 100 0.6 100 1.57 GCF_023278185.1 8963 9080 9080 61 3 52 1 Bradyrhizobium_elkanii_homd_HMT_597 GCA_023299425.1 HMT-604 AT48 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-604 Enterococcus faecalis AT48 4 2924329 37.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/299/425/GCA_023299425.1_ASM2329942v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis PRJNA833940 1351 SAMN28025466 ASM2329942v1 Complete Genome Unicycler v. 0.5.0 2022-05-02T08:20:04.860 not applicable pet food (BARF) Illumina MiniSeq, Oxford Nanopore University of Zurich 98.92 99.53 0.01 100 0.29 GCF_023299425.1 2757 2912 2912 82 12 60 1 Enterococcus_faecalis_homd_HMT_604 GCA_023303005.1 HMT-593 JCVI-JB-Md32 Named Cultivated Oral (Abundance: Medium) HMT-593 Mogibacterium diversum JCVI-JB-Md32 1 1770007 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/303/005/GCA_023303005.1_ASM2330300v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium diversum PRJNA624185 114527 SAMN28033076 ASM2330300v1 Complete Genome Flye v. v2.9-b1768; Polypolish v. v0.4.3 2022-05-02T12:33:05.643 USA: UCLA School of Dentistry saliva Oxford Nanopore GridION; Illumina MiSeq J. Craig Venter Institute 836.0x 96.7 98.58 0 99.77 0.24 GCF_023303005.1 1617 1680 1680 13 6 43 1 Mogibacterium_diversum_homd_HMT_593 GCA_023303065.1 HMT-681 JCVI-JB-Rm27 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI-JB-Rm27 1 2273720 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/303/065/GCA_023303065.1_ASM2330306v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 43675 SAMN28033083 ASM2330306v1 Complete Genome Flye v. v2.9-b1768; Polypolish v. v0.4.3 2022-05-02T12:38:06.203 USA: UCLA School of Dentistry saliva Oxford Nanopore GridION; Illumina MiSeq J. Craig Venter Institute 256.0x 95.47 98.67 0 99.98 0.07 GCF_023303065.1 1837 1909 1909 12 10 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_023303065.1 HMT-681 JCVI-JB-Rm27 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 JCVI-JB-Rm27 1 2273720 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/303/065/GCA_023303065.1_ASM2330306v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA624185 43675 SAMN28033083 ASM2330306v1 Complete Genome Flye v. v2.9-b1768; Polypolish v. v0.4.3 2022-05-02T12:38:06.203 USA: UCLA School of Dentistry saliva Oxford Nanopore GridION; Illumina MiSeq J. Craig Venter Institute 256.0x 95.47 98.67 0 99.98 0.07 GCF_023303065.1 1837 1909 1909 12 10 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_023347355.1 HMT-961 IP-1-18 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-961 Faecalibacterium prausnitzii IP-1-18 1 3038545 56.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/347/355/GCA_023347355.1_ASM2334735v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii PRJNA819544 2929488 SAMN26934697 ASM2334735v1 Complete Genome Unicycler v. 0.4.9 2022-03-24T23:26:03.946 New Zealand: Palmerston North PacBio RSII; Illumina MiSeq AgResearch 45.0x 100 0 98.49 0.31 GCF_023347355.1 2746 2872 2872 44 18 63 1 Faecalibacterium_prausnitzii_homd_HMT_961 GCA_023347705.1 HMT-929 C0061C2 Unnamed Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-929 Peptoniphilaceae [G3] bacterium HMT-929 C0061C2 1 1609887 34.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/347/705/GCA_023347705.1_ASM2334770v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria;s__Fenollaria massiliensis PRJNA832302 938288 SAMN27783523 ASM2334770v1 Complete Genome Canu v. 2.1.1 2022-04-26T15:52:04.343 USA PacBio Sequel University of Maryland Baltimore 1500.0x 96.37 97.55 0 99.81 0.21 GCF_023347705.1 1455 1537 1537 21 12 48 1 Fenollaria_massiliensis_homd_HMT_929 GCA_023373505.1 HMT-197 Noodlococcus Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-197 Kocuria rhizophila Noodlococcus 1 2732108 70.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/373/505/GCA_023373505.1_ASM2337350v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria rhizophila PRJNA835814 72000 SAMN28111796 ASM2337350v1 Complete Genome Trycycler v. 0.5.1 2022-05-06T11:48:06.160 United Kingdom: Birmingham, Un laboratory contaminant Illumina MiSeq; Oxford Nanopore GridION University of Birmingham 112.0x 97.49 98.68 0 100 0.17 GCF_023373505.1 2351 2430 2430 19 9 50 1 Kocuria_rhizophila_homd_HMT_197 GCA_023375105.1 HMT-895 BLa80 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-895 Bifidobacterium animalis BLa80 1 1935434 60.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/375/105/GCA_023375105.1_ASM2337510v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis PRJNA758747 302911 SAMN21499763 ASM2337510v1 Complete Genome Smrtlink v. 10.1 2021-09-18T02:16:06.800 China: Hongyuan, Sichuan breast milk PacBio sequel II Jiangsu Wecare Biotechnology Co., Ltd 2433.9x 99.99 100 0 99.85 0.19 GCF_023375105.1 1557 1628 1628 9 8 53 1 Bifidobacterium_animalis_homd_HMT_895 GCA_023375285.1 HMT-880 S8-3 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-880 Enterococcus durans S8-3 3 3046846 37.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/375/285/GCA_023375285.1_ASM2337528v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B durans PRJNA774104 53345 SAMN23424483 ASM2337528v1 Complete Genome Unicycler v. 0.4.8 2021-11-24T10:43:03.956 not applicable fecal sample Illumina MiniSeq, Oxford Nanopore Minion University of Zurich 95185.0x 98.46 99.63 0.84 100 0.32 GCF_023375285.1 2755 2909 2909 68 18 67 1 Enterococcus_durans_homd_HMT_880 GCA_023383525.1 HMT-420 YWH7054 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis YWH7054 286 2335092 26.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/383/525/GCA_023383525.1_ASM2338352v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA219458 1402203 SAMN07819091 ASM2338352v1 Contig Velvet v. 1.2.07 2017-10-20T18:40:06.990 USA: OH placenta Illumina HiSeq Han laboratory, Department of Periodontics, Case Western Reserve University 87.5x 91.86 100 0.57 100 0.08 GCF_023383525.1 AYHE01 2194 2255 2255 19 4 37 1 Fusobacterium_animalis_homd_HMT_420 GCA_023383545.1 HMT-420 YWH7053 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis YWH7053 291 2373650 26.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/383/545/GCA_023383545.1_ASM2338354v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA219457 1402202 SAMN07819092 ASM2338354v1 Contig Velvet v. 1.2.07 2017-10-20T18:41:03.110 USA: OH placenta Illumina HiSeq Han laboratory, Department of Periodontics, Case Western Reserve University 108.2x 91.85 100 0.57 100 0.09 GCF_023383545.1 AXZQ01 2268 2323 2323 19 3 32 1 Fusobacterium_animalis_homd_HMT_420 GCA_023383575.1 HMT-420 YWH7055 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis YWH7055 165 2204243 26.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/383/575/GCA_023383575.1_ASM2338357v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA219459 1402204 SAMN07819090 ASM2338357v1 Contig Velvet v. 1.2.07 2017-10-20T18:40:05.723 USA: OH amniotic fluid Illumina HiSeq Han laboratory, Department of Periodontics, Case Western Reserve University 125.9x 91.77 100 0 100 0.07 GCF_023383575.1 AYHD01 2069 2127 2127 17 2 38 1 Fusobacterium_animalis_homd_HMT_420 GCA_023383605.1 HMT-420 YWH7056 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis YWH7056 279 2311780 26.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/383/605/GCA_023383605.1_ASM2338360v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA219460 1402205 SAMN07819094 ASM2338360v1 Contig Velvet v. 1.2.07 2017-10-20T18:41:04.940 USA: OH placenta Illumina HiSeq Han laboratory, Department of Periodontics, Case Western Reserve University 210.0x 91.83 100 0.57 100 0.07 GCF_023383605.1 AYHC01 2160 2220 2220 18 2 39 1 Fusobacterium_animalis_homd_HMT_420 GCA_023383645.1 HMT-420 YWH7199 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis YWH7199 276 2342000 27.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/383/645/GCA_023383645.1_ASM2338364v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA219462 1402206 SAMN07819093 ASM2338364v1 Contig Velvet v. 1.2.07 2017-10-20T18:41:04.007 USA: OH term stillborn infant Illumina HiSeq Han laboratory, Department of Periodontics, Case Western Reserve University 89.8x 91.78 100 0.57 100 0.04 GCF_023383645.1 AYHB01 2213 2279 2279 21 5 39 1 Fusobacterium_animalis_homd_HMT_420 GCA_023404035.1 HMT-605 OH_HFB_15 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-605 Desulfovibrio fairfieldensis OH_HFB_15 167 3018945 62.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/404/035/GCA_023404035.1_ASM2340403v1 d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__Desulfovibrio fairfieldensis_A PRJNA682348 1977087 SAMN17045683 ASM2340403v1 Contig MEGAHIT v. 1.2.9 2020-12-09T17:19:13.303 Brazil: Fortaleza feces Illumina HiSeq LNCC 39.0x 90.11 0.68 89.82 1.01 JAEYDF01 2549 2600 2600 15 0 35 1 Desulfovibrio_fairfieldensis_homd_HMT_605 GCA_023425005.1 HMT-630 OH_SBB_74 Named Cultivated Oral (Abundance: Scarce) HMT-630 Bacteroides heparinolyticus OH_SBB_74 187 2997541 47.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/425/005/GCA_023425005.1_ASM2342500v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides heparinolyticus PRJNA682348 1898104 SAMN17040190 ASM2342500v1 Contig MEGAHIT v. 1.2.9 2020-12-09T12:05:52.103 Brazil: Belem feces Illumina HiSeq LNCC 11.0x 88.58 0.74 85.28 0.04 JAFADK01 2369 2426 2426 12 3 41 1 Bacteroides_heparinolyticus_homd_HMT_630 GCA_023436275.1 HMT-630 OH_CDB_24 Named Cultivated Oral (Abundance: Scarce) HMT-630 Bacteroides heparinolyticus OH_CDB_24 61 3413047 47.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/436/275/GCA_023436275.1_ASM2343627v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides heparinolyticus PRJNA682348 1898104 SAMN17032994 ASM2343627v1 Contig MEGAHIT v. 1.2.9 2020-12-08T15:56:10.890 Brazil: Dourados feces Illumina HiSeq LNCC 23.0x 98.51 0.12 99.98 0.02 JAEZJU01 2709 2807 2807 40 1 56 1 Bacteroides_heparinolyticus_homd_HMT_630 GCA_023448035.1 HMT-605 OH_HBlB_57 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-605 Desulfovibrio fairfieldensis OH_HBlB_57 87 3354667 61.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/448/035/GCA_023448035.1_ASM2344803v1 d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__Desulfovibrio fairfieldensis_A PRJNA682348 1977087 SAMN17045188 ASM2344803v1 Contig MEGAHIT v. 1.2.9 2020-12-09T16:54:12.146 Brazil: Blumenau feces Illumina HiSeq LNCC 6.0x 99.41 0 99.99 0.05 JAEXMQ01 2814 2890 2890 22 4 49 1 Desulfovibrio_fairfieldensis_homd_HMT_605 GCA_023452175.1 HMT-605 OH_HDB_106 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-605 Desulfovibrio fairfieldensis OH_HDB_106 113 3390474 61.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/452/175/GCA_023452175.1_ASM2345217v1 d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__Desulfovibrio fairfieldensis_A PRJNA682348 1977087 SAMN17045502 ASM2345217v1 Contig MEGAHIT v. 1.2.9 2020-12-09T17:19:09.630 Brazil: Dourados feces Illumina HiSeq LNCC 9.0x 96.65 0 99.99 0 JAEXWG01 2842 2912 2912 20 2 47 1 Desulfovibrio_fairfieldensis_homd_HMT_605 GCA_023455535.1 HMT-357 OH_HFB_101 Named Cultivated Oral (Abundance: Scarce) HMT-357 Pyramidobacter piscolens OH_HFB_101 69 2438666 59.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/455/535/GCA_023455535.1_ASM2345553v1 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter;s__Pyramidobacter piscolens PRJNA682348 2268202 SAMN17045651 ASM2345553v1 Contig MEGAHIT v. 1.2.9 2020-12-09T17:19:12.726 Brazil: Fortaleza feces Illumina HiSeq LNCC 5.0x 100 0 99.57 1.27 JAEYBZ01 2174 2251 2251 19 4 53 1 Pyramidobacter_piscolens_homd_HMT_357 GCA_023472875.1 HMT-101 CCUG 17915 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava CCUG 17915 85 2265569 49.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/472/875/GCA_023472875.1_ASM2347287v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJNA305687 33053 SAMN28187201 ASM2347287v1 Contig SPAdes v. 3.11.1 2022-05-11T05:51:04.676 Missing Missing Illumina NovaSeq University of Gothenburg - CCUG 300.0x 99.99 99.7 0.34 100 0.02 GCF_023472875.1 JAMDHR01 2173 2244 2244 18 3 49 1 Neisseria_perflava_homd_HMT_101 GCA_023507525.1 HMT-881 PC-C1 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-881 Lentilactobacillus buchneri PC-C1 3 2534159 44.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/507/525/GCA_023507525.1_ASM2350752v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri PRJNA760836 1581 SAMN21236075 ASM2350752v1 Contig SPAdes v. 3.14.1 2021-09-05T08:28:08.267 China: Hunan Fermented vegetables Illumina Jiangsu University 462.3x 99.73 99.06 0 100 0.36 GCF_023507525.1 JAIYET01 2436 2560 2560 44 15 64 1 Lentilactobacillus_buchneri_homd_HMT_881 GCA_023508855.1 HMT-128 CGMH-SL131 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis CGMH-SL131 1 2646605 33.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/508/855/GCA_023508855.1_ASM2350885v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA589350 28035 SAMN13870883 ASM2350885v1 Complete Genome HGAP v. v4 2020-01-16T02:14:05.720 Taiwan blood PacBio Chang Gung Memorial Hospital 120.0x 99.44 99.61 0 100 0.06 GCF_023508855.1 2454 2621 2621 86 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_023508875.1 HMT-128 CGMH-SL138 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis CGMH-SL138 1 2625330 33.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/508/875/GCA_023508875.1_ASM2350887v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA589350 28035 SAMN14009864 ASM2350887v1 Complete Genome HGAP v. v4 2020-02-05T20:56:04.093 Taiwan blood infection PacBio Chang Gung Memorial Hospital 120.0x 99.44 99.32 0 100 0.08 GCF_023508875.1 2439 2607 2607 87 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_023509255.1 HMT-060 CD1121 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum CD1121 1 2374277 55.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/509/255/GCA_023509255.1_ASM2350925v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA541851 37637 SAMN13559122 ASM2350925v1 Complete Genome FLYE v. missing 2019-12-13T10:59:04.657 Bangladesh missing PacBio Sequel II; Illumina MiSeq Divison of Bacterial Diseases, Centers for Disease Control 570.0x 95.8 99.67 0 100 0.16 GCF_023509255.1 2124 2188 2188 6 9 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_023509275.1 HMT-060 PC1145 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum PC1145 1 2402479 55.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/509/275/GCA_023509275.1_ASM2350927v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA541851 37637 SAMN24898294 ASM2350927v1 Complete Genome FLYE v. unspecified 2022-01-12T13:09:04.440 Bangladesh missing PacBio Sequel II; Illumina MiSeq Divison of Bacterial Diseases, Centers for Disease Control 872.0x 95.82 99.67 0 100 0.29 GCF_023509275.1 2143 2208 2208 6 9 49 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_023509295.1 HMT-060 PC1130 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum PC1130 1 2362766 55.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/509/295/GCA_023509295.1_ASM2350929v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA541851 37637 SAMN24898280 ASM2350929v1 Complete Genome FLYE v. unspecified 2022-01-12T13:09:04.270 Bangladesh missing PacBio Sequel II; Illumina MiSeq Divison of Bacterial Diseases, Centers for Disease Control 901.0x 95.77 99.67 0 100 0.05 GCF_023509295.1 2092 2156 2156 6 9 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_023509315.1 HMT-059 PC1113 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum PC1113 1 2514362 56.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/509/315/GCA_023509315.1_ASM2350931v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA541851 43769 SAMN24898270 ASM2350931v1 Complete Genome FLYE v. unspecified 2022-01-12T13:09:04.150 Bangladesh missing PacBio Sequel II; Illumina MiSeq Divison of Bacterial Diseases, Centers for Disease Control 761.0x 97.38 99.67 0 99.98 0.04 GCF_023509315.1 2242 2306 2306 7 9 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_023517815.1 HMT-531 31S Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 31S 1 2102524 44.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/517/815/GCA_023517815.1_ASM2351781v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895068 ASM2351781v1 Complete Genome SPAdes v. 3.11 2021-09-29T08:57:06.323 Netherlands missing Illumina MiSeq + Oxford Nanopore MinION University of Groningen, University Medical Center Groningen 80.0x 99.13 99.66 0 100 0.09 GCF_023517815.1 1983 2118 2118 61 20 53 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023517835.1 HMT-531 31R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 31R 1 2110934 44.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/517/835/GCA_023517835.1_ASM2351783v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895067 ASM2351783v1 Complete Genome SPAdes v. 3.11 2021-09-29T08:57:06.307 Netherlands missing Illumina MiSeq + Oxford Nanopore MinION University of Groningen, University Medical Center Groningen 80.0x 99.1 99.66 0 100 0.09 GCF_023517835.1 1993 2129 2129 61 20 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023517855.1 HMT-531 30S Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 30S 1 2120195 44.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/517/855/GCA_023517855.1_ASM2351785v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895066 ASM2351785v1 Complete Genome SPAdes v. 3.11 2021-09-29T08:57:06.293 Netherlands missing Illumina MiSeq + Oxford Nanopore MinION University of Groningen, University Medical Center Groningen 80.0x 99.1 99.66 0 100 0.09 GCF_023517855.1 2007 2144 2144 63 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023517875.1 HMT-531 30R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 30R 1 2120195 44.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/517/875/GCA_023517875.1_ASM2351787v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895065 ASM2351787v1 Complete Genome SPAdes v. 3.11 2021-09-29T08:57:06.280 Netherlands missing Illumina MiSeq + Oxford Nanopore MinION University of Groningen, University Medical Center Groningen 80.0x 99.1 99.66 0 100 0.09 GCF_023517875.1 2007 2144 2144 63 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023517895.1 HMT-531 23S Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 23S 1 2173202 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/517/895/GCA_023517895.1_ASM2351789v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895064 ASM2351789v1 Complete Genome SPAdes v. 3.11 2021-09-29T08:57:06.263 Netherlands missing Illumina MiSeq + Oxford Nanopore MinION University of Groningen, University Medical Center Groningen 80.0x 99.05 99.89 0 100 0.07 GCF_023517895.1 2100 2236 2236 63 17 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023517915.1 HMT-531 5S Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 5S 1 2158238 44.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/517/915/GCA_023517915.1_ASM2351791v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895062 ASM2351791v1 Complete Genome SPAdes v. 3.11 2021-09-29T08:57:06.230 Netherlands missing Illumina MiSeq + Oxford Nanopore MinION University of Groningen, University Medical Center Groningen 80.0x 99.05 99.89 0 100 0.07 GCF_023517915.1 2075 2209 2209 61 17 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023517935.1 HMT-531 5R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 5R 1 2158228 44.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/517/935/GCA_023517935.1_ASM2351793v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895061 ASM2351793v1 Complete Genome SPAdes v. 3.11 2021-09-29T08:57:06.217 Netherlands missing Illumina MiSeq + Oxford Nanopore MinION University of Groningen, University Medical Center Groningen 80.0x 99.05 99.89 0 100 0.07 GCF_023517935.1 2078 2212 2212 61 17 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023518055.1 HMT-531 4S Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 4S 1 2109143 44.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/518/055/GCA_023518055.1_ASM2351805v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895060 ASM2351805v1 Complete Genome SPAdes v. 3.11 2021-09-29T08:57:06.200 Netherlands missing Illumina MiSeq + Oxford Nanopore MinION University of Groningen, University Medical Center Groningen 80.0x 99.11 99.89 0.08 100 0.02 GCF_023518055.1 2009 2142 2142 59 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023520755.1 HMT-655 B2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-655 Eubacterium limosum B2 1 4421327 47.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/520/755/GCA_023520755.1_ASM2352075v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__Eubacterium limosum PRJNA837804 1736 SAMN28232032 ASM2352075v1 Complete Genome SMRT Analysis v. 2.3.0 2022-05-13T10:04:03.260 France missing PacBio Sequel INSA Toulouse 154.0x 99.99 99.3 0 100 1.15 GCF_023520755.1 4127 4316 4316 111 16 61 1 Eubacterium_limosum_homd_HMT_655 GCA_023520795.1 HMT-019 DSM 44278 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens DSM 44278 1 2465625 59.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/520/795/GCA_023520795.1_ASM2352079v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA453400 38284 SAMN13404507 ASM2352079v1 Complete Genome Newbler v. 2.8; canu v. 1.8 2019-11-27T05:40:30.296 Czech Republic: Havlickuv, Bro human cervix Illumina MiSeq; Oxford Nanopore MiniION Bielefeld University 64.0x 99.99 99.78 0 100 0.02 GCF_023520795.1 2284 2355 2355 7 12 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_023522295.1 HMT-798 TCVGH Named Cultivated Vaginal (Abundance: Medium) HMT-798 Prevotella timonensis TCVGH 149 3061518 42.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/522/295/GCA_023522295.1_ASM2352229v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella timonensis PRJNA454797 2182433 SAMN09041724 ASM2352229v1 Contig SPAdes v. 3.11.1 2018-05-03T06:33:06.540 Taiwan Abscess Illumina National Chung Cheng University 478.0x 99.29 0 99.98 0 GCF_023522295.1 QFFX01 2576 2646 2646 20 4 45 1 Prevotella_timonensis_homd_HMT_798 GCA_023523715.1 HMT-801 SP11 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-801 Enterococcus casseliflavus SP11 1 3337345 42.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/523/715/GCA_023523715.1_ASM2352371v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D;s__Enterococcus_D casseliflavus PRJNA604113 37734 SAMN13955256 ASM2352371v1 Complete Genome Unicycler v. 0.4.7 2020-01-31T09:23:04.050 Germany cloaca Oxford Nanopore MiniION Robert Koch-Institut 1.0x 98.41 99.25 0 100 0.16 GCF_023523715.1 3126 3256 3256 53 15 61 1 Enterococcus_casseliflavus_homd_HMT_801 GCA_023547085.1 HMT-601 C019 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis C019 2 2634259 32.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/547/085/GCA_023547085.1_ASM2354708v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA821968 1282 SAMN28460870 ASM2354708v1 Complete Genome Flye v. 2.9-b1778; Racon v. v1.4.17; Pilon v. 1.24 2022-05-16T23:48:06.201 Australia: Perth pertoneal cavity Illumina NextSeq; Oxford Nanopore MinION Curtin University 142.0x 99.53 99.81 0.56 99.99 1.81 GCF_023547085.1 2440 2604 2604 84 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_023559645.1 HMT-531 ATCC 29522 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans ATCC 29522 28 2121926 44.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/559/645/GCA_023559645.1_ASM2355964v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895069 ASM2355964v1 Contig SPAdes v. 3.11 2021-09-29T08:57:06.340 USA missing Illumina MiSeq University of Groningen, University Medical Center Groningen 80.0x 99.06 99.89 0 100 0.05 GCF_023559645.1 JAJHPH01 2049 2160 2160 61 4 45 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023559725.1 HMT-531 23R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 23R 6 2164891 44.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/559/725/GCA_023559725.1_ASM2355972v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895063 ASM2355972v1 Contig SPAdes v. 3.11 2021-09-29T08:57:06.247 Netherlands missing Illumina MiSeq; Oxford Nanopore MinION University of Groningen, University Medical Center Groningen 80.0x 99.05 99.89 0 100 0.08 GCF_023559725.1 JAIWZR01 2088 2223 2223 62 17 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023559755.1 HMT-531 4R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 4R 13 2102624 44.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/559/755/GCA_023559755.1_ASM2355975v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA767258 714 SAMN21895059 ASM2355975v1 Contig SPAdes v. 3.11 2021-09-29T08:57:06.180 Netherlands missing Illumina MiSeq; Oxford Nanopore MinION University of Groningen, University Medical Center Groningen 80.0x 99.11 99.89 0.08 100 0.02 GCF_023559755.1 JAIWZS01 2006 2134 2134 59 17 51 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_023611505.1 HMT-071 HP01 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus HP01 1 2063152 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/611/505/GCA_023611505.1_ASM2361150v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CT PRJNA841414 1303 SAMN28592655 ASM2361150v1 Complete Genome HGAP v. 2.0 2022-05-23T03:10:06.323 South Korea: Daegu saliva PacBio Sequel Daegu Catholic University School of Medicine 420.0x 92.73 99.87 0.66 100 0.09 GCF_023611505.1 1987 2116 2116 55 12 61 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_023611505.1 HMT-071 HP01 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus HP01 1 2063152 40.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/611/505/GCA_023611505.1_ASM2361150v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CT PRJNA841414 1303 SAMN28592655 ASM2361150v1 Complete Genome HGAP v. 2.0 2022-05-23T03:10:06.323 South Korea: Daegu saliva PacBio Sequel Daegu Catholic University School of Medicine 420.0x 92.73 99.87 0.66 100 0.09 GCF_023611505.1 1987 2116 2116 55 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_023614525.1 HMT-109 SAHP1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-109 Peptoniphilus harei SAHP1 1 1917962 34.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/614/525/GCA_023614525.1_ASM2361452v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A genitalis PRJNA841842 3036303 SAMN28626158 ASM2361452v1 Complete Genome Unicycler v. 0.5.0 2022-05-24T08:36:04.813 China: Shenzhen Bloodstream Oxford Nanopore PromethION The Seventh Affiliated Hospital, Sun Yat-sen University 1881.0x 96.62 99.3 0 99.98 0.17 GCF_023614525.1 1799 1889 1889 38 9 42 1 Peptoniphilus_harei_homd_HMT_109 GCA_023635035.1 HMT-476 HP0076 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HP0076 3 2250070 49.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/635/035/GCA_023635035.1_ASM2363503v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA714914 28449 SAMN18320770 ASM2363503v1 Contig HGAP v. 3 2021-03-16T13:34:04.083 Singapore: Singapore PacBio RSII Nanyang Technological University 322.1x 94 99.77 0.49 100 0.84 GCF_023635035.1 JAGEOL01 2170 2268 2268 18 16 63 1 Neisseria_subflava_homd_HMT_476 GCA_023635065.1 HMT-476 TT0074 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava TT0074 2 2277765 49.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/635/065/GCA_023635065.1_ASM2363506v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA714914 28449 SAMN18320764 ASM2363506v1 Contig HGAP v. 3 2021-03-16T13:34:04.000 Singapore: Singapore PacBio RSII Nanyang Technological University 186.2x 96.64 99.25 0.23 100 0.8 GCF_023635065.1 JAGEOM01 2214 2330 2330 44 12 59 1 Neisseria_subflava_homd_HMT_476 GCA_023635085.1 HMT-610 SG0010 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens SG0010 5 2420185 48.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/635/085/GCA_023635085.1_ASM2363508v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJNA714914 28449 SAMN18320762 ASM2363508v1 Contig HGAP v. 3 2021-03-16T13:34:03.973 Singapore: Singapore PacBio RSII Nanyang Technological University 333.3x 95.58 99.92 1.13 100 0.01 GCF_023635085.1 JAGEOO01 2262 2376 2376 41 12 60 1 Neisseria_flavescens_homd_HMT_610 GCA_023635105.1 HMT-476 HP0001 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HP0001 4 2457335 49.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/635/105/GCA_023635105.1_ASM2363510v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA714914 28449 SAMN18320763 ASM2363510v1 Contig HGAP v. 3 2021-03-16T13:34:03.990 Singapore: Singapore PacBio RSII Nanyang Technological University 328.7x 96.6 99.62 0.23 100 0.46 GCF_023635105.1 JAGEON01 2426 2562 2562 64 12 59 1 Neisseria_subflava_homd_HMT_476 GCA_023668195.1 HMT-976 MB20-206 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-976 Phocaeicola massiliensis MB20-206 88 4458544 42.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/668/195/GCA_023668195.1_ASM2366819v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola massiliensis PRJNA843113 204516 SAMN28703716 ASM2366819v1 Contig SPAdes v. 3.14.67 2022-05-27T17:06:05.086 Slovenia feces Illumina HiSeq National laboratory for health, environment and food 28204920.0x 99.22 99.26 0.19 99.98 0.05 GCF_023668195.1 JAMOWN01 3828 3909 3909 11 8 61 1 Phocaeicola_massiliensis_homd_HMT_976 GCA_023668475.1 HMT-976 MB20-133 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-976 Phocaeicola massiliensis MB20-133 81 4740807 42.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/668/475/GCA_023668475.1_ASM2366847v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola massiliensis PRJNA843113 204516 SAMN28703703 ASM2366847v1 Contig SPAdes v. 3.14.54 2022-05-27T17:06:04.900 Slovenia feces Illumina HiSeq National laboratory for health, environment and food 23360356.0x 99.14 99.26 0.19 99.99 0.18 GCF_023668475.1 JAMOXA01 4102 4178 4178 11 8 56 1 Phocaeicola_massiliensis_homd_HMT_976 GCA_023704215.1 HMT-895 HY8002 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-895 Bifidobacterium animalis HY8002 1 1944140 60.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/704/215/GCA_023704215.1_ASM2370421v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis PRJNA819830 28025 SAMN26937365 ASM2370421v1 Complete Genome Unicycler version 0.4.3 v. march-2020 2022-03-25T05:11:02.930 South Korea feces PacBio hy research institute 404.8x 99.99 100 0 99.89 0.24 GCF_023704215.1 1561 1636 1636 9 12 53 1 Bifidobacterium_animalis_homd_HMT_895 GCA_023712675.1 HMT-076 MSL 316.2 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri MSL 316.2 37 2550295 32.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/712/675/GCA_023712675.1_ASM2371267v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA832800 1292 SAMN27922061 ASM2371267v1 Contig CLC NGS Cell v. JAN-2022 2022-04-27T19:04:05.647 USA Cleanroom Illumina HiSeq Jet Propulsion Laboratory 100.0x 99.57 99.73 0.06 100 0.09 GCF_023712675.1 JAMAXR01 2449 2570 2570 50 8 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_023713025.1 HMT-587 MSL 004.1.2 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa MSL 004.1.2 76 2448390 53.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/713/025/GCA_023713025.1_ASM2371302v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA832800 2047 SAMN27922043 ASM2371302v1 Contig CLC NGS Cell v. JAN-2022 2022-04-27T19:04:05.323 USA Cleanroom Illumina HiSeq Jet Propulsion Laboratory 100.0x 96.76 99.34 0.99 100 0.27 GCF_023713025.1 JAMAWZ01 2092 2159 2159 13 4 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_023713505.1 HMT-076 MER TA 18 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri MER TA 18 27 2424208 32.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/713/505/GCA_023713505.1_ASM2371350v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA832800 1292 SAMN27922018 ASM2371350v1 Contig CLC NGS Cell v. JAN-2022 2022-04-27T19:04:04.970 USA Cleanroom Illumina HiSeq Jet Propulsion Laboratory 100.0x 99.65 99.73 0.06 99.99 0.1 GCF_023713505.1 JAMAWA01 2305 2424 2424 47 9 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_023716965.1 HMT-180 11953 Unnamed Cultivated Oral (Abundance: Medium) HMT-180 Schaalia sp. HMT-180 11953 42 2331528 66.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/716/965/GCA_023716965.1_ASM2371696v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000185285 PRJNA846272 52773 SAMN28871634 ASM2371696v1 Contig Velvet v. May-2022 2022-06-06T11:29:04.380 China: Ningbo bronchoalveolar lavage fluid Illumina HiSeq Ningbo First Hospital 100.0x 83.64 99.53 0.47 99.99 0.04 GCF_023716965.1 JAMQRY01 1968 2032 2032 10 3 50 1 Schaalia_sp_HMT_180_homd_HMT_180 GCA_023743875.1 HMT-803 DRD-111 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-803 Enterococcus italicus DRD-111 28 2334547 39.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/743/875/GCA_023743875.1_ASM2374387v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G;s__Enterococcus_G italicus PRJNA847029 246144 SAMN28911231 ASM2374387v1 Scaffold Unicycler - PATRIC v. 3.6.8; MeDuSa v. 1.6 2022-06-08T06:38:05.990 Greece: Epirus raw sheep milk Illumina NovaSeq Hellenic Agricultural Organization - DIMITRA 333.0x 98.71 99.01 0 99.94 0.3 GCF_023743875.1 JAMRVB01 2240 2335 2335 54 2 38 1 Enterococcus_italicus_homd_HMT_803 GCA_023744155.1 HMT-803 DRD-74 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-803 Enterococcus italicus DRD-74 29 2390136 39.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/744/155/GCA_023744155.1_ASM2374415v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G;s__Enterococcus_G italicus PRJNA847029 246144 SAMN28911229 ASM2374415v1 Scaffold Unicycler - PATRIC v. 3.6.8; MeDuSa v. 1.6 2022-06-08T06:38:05.960 Greece: Epirus raw sheep milk Illumina NovaSeq Hellenic Agricultural Organization - DIMITRA 382.0x 98.91 99.01 0.02 100 0.1 GCF_023744155.1 JAMRVD01 2336 2422 2422 44 2 39 1 Enterococcus_italicus_homd_HMT_803 GCA_023822425.1 HMT-619 W50 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis W50 1 2345841 48.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/822/425/GCA_023822425.1_ASM2382242v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA804142 837 SAMN25704869 ASM2382242v1 Complete Genome Unicycler v. 0.4.0; SPAdes v. 3.7 2022-02-07T13:07:03.016 Germany Oxford Nanopore GridION /; Illumina HiSeq Kings College London 30.0x 98.57 99.92 0 99.99 0.04 GCF_023822425.1 1996 2084 2084 22 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_023822445.1 HMT-619 W50/BE1 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis W50/BE1 1 2333418 48.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/822/445/GCA_023822445.1_ASM2382244v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA804142 837 SAMN25704870 ASM2382244v1 Complete Genome Unicycler v. 0.4.0; SPAdes v. 3.7 2022-02-07T13:07:03.043 United Kingdom Chemostat Oxford Nanopore GridION; Illumina HiSeq Kings College London 30.0x 98.57 99.61 0 99.99 0.04 GCF_023822445.1 1988 2076 2076 22 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_023822465.1 HMT-619 W50/BR1 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis W50/BR1 1 2332345 48.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/822/465/GCA_023822465.1_ASM2382246v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA804142 837 SAMN25704871 ASM2382246v1 Complete Genome Unicycler v. 0.4.0; SPAdes v. 3.7 2022-02-07T13:07:03.056 United Kingdom Chemostat Oxford Nanopore GridION; Illumina HiSeq Kings College London 30.0x 98.58 99.61 0 99.99 0.04 GCF_023822465.1 1987 2075 2075 22 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_023823145.1 HMT-883 9D3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-883 Lactiplantibacillus pentosus 9D3 7 3812583 46.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/823/145/GCA_023823145.1_ASM2382314v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus PRJNA739022 1589 SAMN19769714 ASM2382314v1 Complete Genome Unicycler v. recon 2; snippy v. 4.6.0 2021-06-18T01:07:09.170 Thailand PacBio RSII; Illumina NextSeq Mahidol University 246.8x 97.95 99.38 2.78 100 0.44 GCF_023823145.1 3427 3569 3569 48 16 77 1 Lactiplantibacillus_pentosus_homd_HMT_883 GCA_023824295.1 HMT-027 QJ1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-027 Cupriavidus gilardii QJ1 3 5835791 67.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/824/295/GCA_023824295.1_ASM2382429v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus;s__Cupriavidus gilardii PRJNA846986 82541 SAMN28907217 ASM2382429v1 Complete Genome HGAP v. 2.3 2022-06-08T03:41:03.757 China:Shandong PacBio Institute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural Sciences 120.0x 98.79 99.89 0.75 100 0.09 GCF_023824295.1 5265 5367 5367 23 12 66 1 Cupriavidus_gilardii_homd_HMT_027 GCA_023923185.1 HMT-245 TT14 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-245 Roseomonas mucosa TT14 10 5531171 70.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/923/185/GCA_023923185.1_ASM2392318v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas mucosa PRJNA849718 207340 SAMN29127794 ASM2392318v1 Complete Genome Unicycler v. v0.5.0 2022-06-15T23:33:03.433 South Korea: Changwon Oxford Nanopore MinION Changwon National University 37.4x 99.02 96.11 0 98.69 1.2 GCF_023923185.1 5206 5317 5317 27 15 68 1 Roseomonas_mucosa_homd_HMT_245 GCA_023972895.1 HMT-883 KW1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-883 Lactiplantibacillus pentosus KW1 5 3860943 45.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/972/895/GCA_023972895.1_ASM2397289v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus PRJNA850900 1589 SAMN29205040 ASM2397289v1 Complete Genome Flye v. MAY-2022 2022-06-20T05:53:04.083 Norway MinION Oxford Nanopore Technologies Norwegian University of Life Sciences 124.0x 99.81 100 3.4 100 3.13 GCF_023972895.1 3514 3652 3652 53 16 68 1 Lactiplantibacillus_pentosus_homd_HMT_883 GCA_023973105.1 HMT-282 AJ6079 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-282 Acinetobacter junii AJ6079 1 3362966 38.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/973/105/GCA_023973105.1_ASM2397310v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter junii PRJNA850553 40215 SAMN29198126 ASM2397310v1 Complete Genome HGAP v. 4 2022-06-18T09:33:04.907 China: Guangdong NA PacBio RSII Peking University Peoples Hospital 793.3x 98.23 100 0.31 100 0.3 GCF_023973105.1 3177 3290 3290 20 18 74 1 Acinetobacter_junii_homd_HMT_282 GCA_024089355.1 HMT-734 SN75752 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae SN75752 1 2151943 39.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/089/355/GCA_024089355.1_ASM2408935v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJNA789167 1313 SAMN24060680 ASM2408935v1 Complete Genome Trycycler v. 1.0 2021-12-15T08:43:03.300 Germany: North-Rhine, Westfali Female patient blood Illumina NovaSeq and PacBio Sequel II University of Lausanne 250.0x 98.57 99.6 0.21 100 0.32 GCF_024089355.1 2139 2291 2291 81 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_024104375.1 HMT-128 Q-087 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis Q-087 33 2534192 33.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/375/GCA_024104375.1_ASM2410437v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA727671 28035 SAMN19028254 ASM2410437v1 Contig SPAdes v. 3.12 2021-05-05T22:34:05.443 China: Hong Kong Wound specimen Illumina NovaSeq The University of Hong Kong 224.1x 99.54 99.56 0 100 0.06 GCF_024104375.1 JAHAVD01 2360 2511 2511 86 7 57 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_024104395.1 HMT-128 Q-081 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis Q-081 40 2623763 33.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/395/GCA_024104395.1_ASM2410439v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA727671 28035 SAMN19028253 ASM2410439v1 Contig SPAdes v. 3.12 2021-05-05T22:34:05.433 China: Hong Kong Wound specimen Illumina NovaSeq The University of Hong Kong 255.3x 99.53 99.56 0 100 0.09 GCF_024104395.1 JAHAVE01 2448 2605 2605 90 8 58 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_024104415.1 HMT-128 Q-046 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis Q-046 38 2566020 33.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/415/GCA_024104415.1_ASM2410441v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA727671 28035 SAMN19028251 ASM2410441v1 Contig SPAdes v. 3.12 2021-05-05T22:34:05.407 China: Hong Kong Wound specimen Illumina NovaSeq The University of Hong Kong 181.0x 99.53 99.56 0 100 0.07 GCF_024104415.1 JAHAVG01 2378 2533 2533 89 8 57 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_024104435.1 HMT-128 Q-058 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis Q-058 40 2605218 33.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/435/GCA_024104435.1_ASM2410443v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA727671 28035 SAMN19028252 ASM2410443v1 Contig SPAdes v. 3.12 2021-05-05T22:34:05.420 China: Hong Kong Wound specimen Illumina NovaSeq The University of Hong Kong 246.8x 99.53 99.56 0 100 0.07 GCF_024104435.1 JAHAVF01 2437 2589 2589 86 7 58 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_024104455.1 HMT-128 Q-026 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis Q-026 40 2626353 33.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/455/GCA_024104455.1_ASM2410445v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA727671 28035 SAMN19028250 ASM2410445v1 Contig SPAdes v. 3.12 2021-05-05T22:34:05.390 China: Hong Kong Wound specimen Illumina NovaSeq The University of Hong Kong 143.4x 99.54 99.56 0 100 0.09 GCF_024104455.1 JAHAVH01 2456 2612 2612 90 7 58 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_024104475.1 HMT-128 K-015 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis K-015 34 2545458 33.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/475/GCA_024104475.1_ASM2410447v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA727671 28035 SAMN19028249 ASM2410447v1 Contig SPAdes v. 3.12 2021-05-05T22:34:05.377 China: Hong Kong Wound specimen Illumina NovaSeq The University of Hong Kong 154.5x 99.54 99.56 0 100 0.06 GCF_024104475.1 JAHAVI01 2365 2518 2518 87 8 57 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_024104495.1 HMT-128 K-060 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis K-060 45 2626997 33.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/495/GCA_024104495.1_ASM2410449v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA727671 28035 SAMN19028248 ASM2410449v1 Contig SPAdes v. 3.12 2021-05-05T22:34:05.363 China: Hong Kong Wound specimen Illumina NovaSeq The University of Hong Kong 162.3x 99.54 99.56 0 100 0.09 GCF_024104495.1 JAHAVJ01 2454 2611 2611 90 7 59 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_024104505.1 HMT-128 K-016 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis K-016 38 2624890 33.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/505/GCA_024104505.1_ASM2410450v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA727671 28035 SAMN19028247 ASM2410450v1 Contig SPAdes v. 3.12 2021-05-05T22:34:05.257 China: Hong Kong Wound specimen Illumina NovaSeq The University of Hong Kong 118.8x 99.53 99.56 0 100 0.09 GCF_024104505.1 JAHAVK01 2450 2606 2606 90 8 57 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_024104815.1 HMT-552 ESL7 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum ESL7 31 2572090 63.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/815/GCA_024104815.1_ASM2410481v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186364 ASM2410481v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.440 Slovenia: Ankaran prosthetic joint infections Illumina MiSeq Aarhus University 145.0x 98.39 100 0 99.99 0.13 GCF_024104815.1 JAHDTQ01 2391 2466 2466 23 5 46 1 Cutibacterium_avidum_homd_HMT_552 GCA_024104825.1 HMT-552 ESL12 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum ESL12 20 2501297 63.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/825/GCA_024104825.1_ASM2410482v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186365 ASM2410482v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.453 Slovenia: Ankaran prosthetic joint infections Illumina MiSeq Aarhus University 121.0x 98.72 99.34 0 99.99 0.12 GCF_024104825.1 JAHDTP01 2302 2374 2374 21 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_024104855.1 HMT-552 ESL6 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum ESL6 20 2506714 63.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/855/GCA_024104855.1_ASM2410485v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186363 ASM2410485v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.423 Slovenia: Ankaran prosthetic joint infections Illumina MiSeq Aarhus University 203.0x 98.74 99.34 0 99.99 0.12 GCF_024104855.1 JAHDTR01 2300 2373 2373 22 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_024104875.1 HMT-552 ESL2 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum ESL2 17 2512404 63.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/875/GCA_024104875.1_ASM2410487v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186362 ASM2410487v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.410 Slovenia: Ankaran prosthetic joint infections Illumina MiSeq Aarhus University 105.0x 98.43 100 0 100 0.12 GCF_024104875.1 JAHDTS01 2299 2374 2374 23 5 46 1 Cutibacterium_avidum_homd_HMT_552 GCA_024104895.1 HMT-552 HOL5 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum HOL5 16 2471868 63.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/895/GCA_024104895.1_ASM2410489v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186359 ASM2410489v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.367 Netherlands: Groningen prosthetic joint infections Illumina MiSeq Aarhus University 122.0x 98.69 99.34 0 99.99 0.1 GCF_024104895.1 JAHDTV01 2252 2328 2328 22 6 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_024104915.1 HMT-552 ZH12 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum ZH12 29 2595783 63.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/915/GCA_024104915.1_ASM2410491v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186361 ASM2410491v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.397 Switzerland: Zurich prosthetic joint infections Illumina MiSeq Aarhus University 201.0x 98.41 100 0 100 0.16 GCF_024104915.1 JAHDTT01 2413 2488 2488 23 4 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_024104925.1 HMT-552 HOL4 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum HOL4 22 2605641 63.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/925/GCA_024104925.1_ASM2410492v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186358 ASM2410492v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.350 Netherlands: Groningen prosthetic joint infections Illumina MiSeq Aarhus University 102.0x 98.68 100 0 99.99 0.22 GCF_024104925.1 JAHDTW01 2367 2443 2443 23 5 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_024104955.1 HMT-552 ZH9 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum ZH9 23 2512250 63.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/955/GCA_024104955.1_ASM2410495v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186360 ASM2410495v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.380 Switzerland: Zurich prosthetic joint infections Illumina MiSeq Aarhus University 167.0x 98.66 100 0 100 0.25 GCF_024104955.1 JAHDTU01 2294 2366 2366 22 3 46 1 Cutibacterium_avidum_homd_HMT_552 GCA_024104975.1 HMT-552 FJD262 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum FJD262 39 2576103 63.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/975/GCA_024104975.1_ASM2410497v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186357 ASM2410497v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.337 Spain: Madrid prosthetic joint infections Illumina MiSeq Aarhus University 131.0x 98.59 100 0.66 100 0.34 GCF_024104975.1 JAHDTX01 2355 2430 2430 22 5 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_024104995.1 HMT-552 HS9 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum HS9 37 2686855 63.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/995/GCA_024104995.1_ASM2410499v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186356 ASM2410499v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.320 Spain: Madrid healthy skin Illumina MiSeq Aarhus University 181.0x 96.46 99.78 0.66 99.98 0.25 GCF_024104995.1 JAHDTY01 2454 2537 2537 28 5 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_024105015.1 HMT-552 HS8 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum HS8 26 2628607 63.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/105/015/GCA_024105015.1_ASM2410501v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186355 ASM2410501v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.307 Spain: Madrid healthy skin Illumina MiSeq Aarhus University 113.0x 98.61 100 0 99.99 0.19 GCF_024105015.1 JAHDTZ01 2374 2450 2450 22 5 48 1 Cutibacterium_avidum_homd_HMT_552 GCA_024105025.1 HMT-552 HS7 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum HS7 42 2691232 63.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/105/025/GCA_024105025.1_ASM2410502v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186354 ASM2410502v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.293 Spain: Madrid healthy skin Illumina MiSeq Aarhus University 151.0x 96.45 99.78 0.66 99.98 0.35 GCF_024105025.1 JAHDUA01 2455 2538 2538 28 5 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_024105055.1 HMT-552 HS6 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum HS6 19 2643900 63.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/105/055/GCA_024105055.1_ASM2410505v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186353 ASM2410505v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.280 Spain: Madrid healthy skin Illumina MiSeq Aarhus University 115.0x 98.69 100 0 99.99 0.22 GCF_024105055.1 JAHDUB01 2423 2499 2499 23 5 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_024105075.1 HMT-552 HS4 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum HS4 49 2728527 63.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/105/075/GCA_024105075.1_ASM2410507v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186352 ASM2410507v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.257 Spain: Madrid healthy skin Illumina MiSeq Aarhus University 107.0x 96.4 100 0 99.99 0.37 GCF_024105075.1 JAHDUC01 2475 2557 2557 28 4 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_024105095.1 HMT-552 HS2 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum HS2 22 2580831 63.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/105/095/GCA_024105095.1_ASM2410509v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186351 ASM2410509v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.243 Spain: Madrid healthy skin Illumina MiSeq Aarhus University 145.0x 98.68 100 0 99.99 0.22 GCF_024105095.1 JAHDUD01 2337 2413 2413 23 5 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_024105125.1 HMT-552 HS1 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum HS1 26 2646334 63.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/105/125/GCA_024105125.1_ASM2410512v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA729908 33010 SAMN19186350 ASM2410512v1 Contig SPAdes v. 3.13 2021-05-14T07:30:10.223 Spain: Madrid healthy skin Illumina MiSeq Aarhus University 121.0x 98.69 100 0 99.99 0.22 GCF_024105125.1 JAHDUE01 2427 2503 2503 23 5 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_024125345.1 HMT-974 NB2A-29-D6 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-974 Parabacteroides merdae NB2A-29-D6 6 4718822 45.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/125/345/GCA_024125345.1_ASM2412534v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae PRJNA835435 46503 SAMN28102043 ASM2412534v1 Contig Unicycler v. APRIL-2020 2022-05-05T12:30:19.640 not applicable feces Illumina MiSeq; NanoPore GridION MET-4 284.0x 99.83 99.62 0.19 99.99 0.25 GCF_024125345.1 JAMXVJ01 3949 4069 4069 20 19 80 1 Parabacteroides_merdae_homd_HMT_974 GCA_024129415.1 HMT-590 S 4446-13 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-590 Brevundimonas diminuta S 4446-13 8 3281946 66.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/129/415/GCA_024129415.1_ASM2412941v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__Brevundimonas diminuta_B PRJNA844552 293 SAMN29162689 ASM2412941v1 Contig SPAdes v. 3.12 2022-06-17T06:08:04.520 Czech Republic: Moravia Illumina HiSeq Palacky University Olomouc 30.0x 89.91 100 0 99.99 0.29 GCF_024129415.1 JAMXYE01 3114 3184 3184 15 3 52 0 Brevundimonas_diminuta_homd_HMT_590 GCA_024129445.1 HMT-590 S 4446-7 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-590 Brevundimonas diminuta S 4446-7 12 3281034 66.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/129/445/GCA_024129445.1_ASM2412944v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__Brevundimonas diminuta_B PRJNA844552 293 SAMN29162688 ASM2412944v1 Contig SPAdes v. 3.12 2022-06-17T06:08:04.510 Czech Republic: Moravia Illumina HiSeq Palacky University Olomouc 30.0x 89.91 100 0 100 0.29 GCF_024129445.1 JAMXYD01 3111 3181 3181 15 3 52 0 Brevundimonas_diminuta_homd_HMT_590 GCA_024138775.1 HMT-034 DSM 44532 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 DSM 44532 1 2683765 60.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/138/775/GCA_024138775.1_ASM2413877v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA713536 169292 SAMN18253773 ASM2413877v1 Chromosome SPAdes v. 3.13.1 2021-03-11T05:19:07.207 Germany Blood culture Illumina MiSeq Northumbria University 68.0x 99.99 99.12 0 99.99 0.12 GCF_024138775.1 2494 2560 2560 7 6 52 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_024138775.1 HMT-034 DSM 44532 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 DSM 44532 1 2683765 60.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/138/775/GCA_024138775.1_ASM2413877v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA713536 169292 SAMN18253773 ASM2413877v1 Chromosome SPAdes v. 3.13.1 2021-03-11T05:19:07.207 Germany Blood culture Illumina MiSeq Northumbria University 68.0x 99.99 99.12 0 99.99 0.12 GCF_024138775.1 2494 2560 2560 7 6 52 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_024140205.1 HMT-200 CNGBCC1850030 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii CNGBCC1850030 32 2078835 26.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/140/205/GCA_024140205.1_ASM2414020v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA847373 155615 SAMN28932599 ASM2414020v1 Contig assembly-scan v. 0.4.1; Shovill v. 1.1.0 2022-06-09T03:52:04.140 China: Shenzhen feces from healthy individual BGISEQ China National GeneBank 524.0x 97.61 100 0 99.98 0.08 GCF_024140205.1 JAMXTT01 1929 1996 1996 17 3 46 1 Fusobacterium_vincentii_homd_HMT_200 GCA_024167965.1 HMT-960 NB2A-17-FMU Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-960 Agathobacter rectalis NB2A-17-FMU 1 2804625 41.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/167/965/GCA_024167965.1_ASM2416796v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__Agathobacter rectalis PRJNA835435 39491 SAMN28102050 ASM2416796v1 Chromosome Shovill v. AUGUST-2016 2022-05-05T12:30:19.763 not applicable Illumina MiSeq MET-4 600.0x 97.78 99.52 0 99.77 0.03 GCF_024167965.1 2573 2699 2699 56 10 59 1 Agathobacter_rectalis_homd_HMT_960 GCA_024170065.1 HMT-834 SLBN-103 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-834 Pseudomonas otitidis SLBN-103 1 6298479 67.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/170/065/GCA_024170065.1_ASM2417006v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas;s__Metapseudomonas otitidis PRJNA708489 319939 SAMN18243029 ASM2417006v1 Contig HGAP v. smrtlink/8.0.0.80529, HGAP 4 (1.0) 2021-03-10T12:24:45.420 USA: California missing PacBio DOE Joint Genome Institute 154.0x 98.28 100 0.79 100 0.03 GCF_024170065.1 JALJXM01 5698 5872 5872 85 12 76 1 Pseudomonas_otitidis_homd_HMT_834 GCA_024172845.1 HMT-193 28N Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum 28N 29 2631115 59.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/172/845/GCA_024172845.1_ASM2417284v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJNA162701 1182753 SAMN29439307 ASM2417284v1 Contig Velvet v. 1.2.03 2022-06-30T10:20:04.990 USA: WA synovium from a patient with failed shoulder athroplasty Illumina; 454 Bumgarner laboratory, Department of Microbiology, University of Washington 853.0x 99.94 100 0 99.99 0.3 GCF_024172845.1 ALWL01 2555 2633 2633 24 6 47 1 Cutibacterium_modestum_homd_HMT_193 GCA_024172855.1 HMT-193 31N Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum 31N 24 2609057 59.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/172/855/GCA_024172855.1_ASM2417285v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJNA162705 1182755 SAMN29439309 ASM2417285v1 Contig Velvet v. 1.2.03 2022-06-30T10:20:07.523 USA: WA glenoid membrane from a patient with failed shoulder athroplasty Illumina; 454 Bumgarner laboratory, Department of Microbiology, University of Washington 605.0x 99.72 100 0 100 0.35 GCF_024172855.1 ALWN01 2551 2626 2626 24 3 47 1 Cutibacterium_modestum_homd_HMT_193 GCA_024172895.1 HMT-193 30N Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum 30N 26 2627068 59.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/172/895/GCA_024172895.1_ASM2417289v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJNA162703 1182754 SAMN29439308 ASM2417289v1 Contig Velvet v. 1.2.03 2022-06-30T10:20:06.114 USA: WA Illumina; 454 Bumgarner laboratory, Department of Microbiology, University of Washington 943.0x 99.93 100 0 99.99 0.33 GCF_024172895.1 ALWM01 2566 2641 2641 24 3 47 1 Cutibacterium_modestum_homd_HMT_193 GCA_024181105.1 HMT-029 OMZ 861 Named Cultivated Oral (Abundance: Low) HMT-029 Treponema vincentii clade-029 OMZ 861 1 2641120 45.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/105/GCA_024181105.1_ASM2418110v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema vincentii PRJNA284866 69710 SAMN11253847 ASM2418110v1 Complete Genome Canu v. 1.8; pilon v. 1.22 2019-03-26T03:32:04.863 China subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 1201.0x 100 0 97.78 1.16 GCF_024181105.1 2345 2408 2408 5 6 51 1 Treponema_vincentii_HMT_029_432 GCA_024181105.1 HMT-029 OMZ 861 Named Cultivated Oral (Abundance: Low) HMT-029 Treponema vincentii clade-029 OMZ 861 1 2641120 45.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/105/GCA_024181105.1_ASM2418110v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema vincentii PRJNA284866 69710 SAMN11253847 ASM2418110v1 Complete Genome Canu v. 1.8; pilon v. 1.22 2019-03-26T03:32:04.863 China subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 1201.0x 100 0 97.78 1.16 GCF_024181105.1 2345 2408 2408 5 6 51 1 Treponema_vincentii_clade_029_homd_HMT_029 GCA_024181125.1 HMT-029 OMZ 862 Named Cultivated Oral (Abundance: Low) HMT-029 Treponema vincentii clade-029 OMZ 862 1 2717368 45.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/125/GCA_024181125.1_ASM2418112v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema vincentii PRJNA284866 69710 SAMN11253848 ASM2418112v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2019-03-26T03:32:04.880 China subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 1115.0x 100 0.81 99.56 1.2 GCF_024181125.1 2446 2508 2508 5 6 50 1 Treponema_vincentii_HMT_029_432 GCA_024181125.1 HMT-029 OMZ 862 Named Cultivated Oral (Abundance: Low) HMT-029 Treponema vincentii clade-029 OMZ 862 1 2717368 45.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/125/GCA_024181125.1_ASM2418112v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema vincentii PRJNA284866 69710 SAMN11253848 ASM2418112v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2019-03-26T03:32:04.880 China subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 1115.0x 100 0.81 99.56 1.2 GCF_024181125.1 2446 2508 2508 5 6 50 1 Treponema_vincentii_clade_029_homd_HMT_029 GCA_024181165.1 HMT-432 BF2M Named Cultivated Oral (Abundance: Medium) HMT-432 Treponema vincentii clade-432 BF2M 1 2804974 44.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/165/GCA_024181165.1_ASM2418116v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema sp010365865 PRJNA284866 120682 SAMN03733599 ASM2418116v1 Complete Genome Canu v. 1.8; pilon v. 1.22 2015-05-26T00:01:20.000 Switzerland Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 369.0x 100 3.23 99.82 1.4 GCF_024181165.1 2540 2606 2606 10 6 49 1 Treponema_vincentii_HMT_029_432 GCA_024181165.1 HMT-432 BF2M Named Cultivated Oral (Abundance: Medium) HMT-432 Treponema vincentii clade-432 BF2M 1 2804974 44.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/165/GCA_024181165.1_ASM2418116v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema sp010365865 PRJNA284866 120682 SAMN03733599 ASM2418116v1 Complete Genome Canu v. 1.8; pilon v. 1.22 2015-05-26T00:01:20.000 Switzerland Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 369.0x 100 3.23 99.82 1.4 GCF_024181165.1 2540 2606 2606 10 6 49 1 Treponema_vincentii_clade_432_homd_HMT_432 GCA_024181185.1 HMT-432 OMZ 906 Named Cultivated Oral (Abundance: Medium) HMT-432 Treponema vincentii clade-432 OMZ 906 1 2812357 44.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/185/GCA_024181185.1_ASM2418118v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema sp010365865 PRJNA284866 2563662 SAMN11253844 ASM2418118v1 Complete Genome Canu v. 1.8; pilon v. 1.22 2019-03-26T03:32:04.800 Switzerland subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 559.0x 100 0 97.6 0.95 GCF_024181185.1 2489 2559 2559 14 6 49 1 Treponema_vincentii_HMT_029_432 GCA_024181185.1 HMT-432 OMZ 906 Named Cultivated Oral (Abundance: Medium) HMT-432 Treponema vincentii clade-432 OMZ 906 1 2812357 44.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/185/GCA_024181185.1_ASM2418118v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema sp010365865 PRJNA284866 2563662 SAMN11253844 ASM2418118v1 Complete Genome Canu v. 1.8; pilon v. 1.22 2019-03-26T03:32:04.800 Switzerland subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 559.0x 100 0 97.6 0.95 GCF_024181185.1 2489 2559 2559 14 6 49 1 Treponema_vincentii_clade_432_homd_HMT_432 GCA_024181205.1 HMT-029 OMZ 802 Named Cultivated Oral (Abundance: Low) HMT-029 Treponema vincentii clade-029 OMZ 802 1 2594485 45.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/205/GCA_024181205.1_ASM2418120v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema vincentii PRJNA284866 69710 SAMN11253845 ASM2418120v1 Complete Genome Canu v. 1.8; pilon v. 1.22 2019-03-26T03:32:04.820 Switzerland subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 955.0x 100 0 99.66 1.24 GCF_024181205.1 2273 2337 2337 7 6 50 1 Treponema_vincentii_HMT_029_432 GCA_024181205.1 HMT-029 OMZ 802 Named Cultivated Oral (Abundance: Low) HMT-029 Treponema vincentii clade-029 OMZ 802 1 2594485 45.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/205/GCA_024181205.1_ASM2418120v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema vincentii PRJNA284866 69710 SAMN11253845 ASM2418120v1 Complete Genome Canu v. 1.8; pilon v. 1.22 2019-03-26T03:32:04.820 Switzerland subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 955.0x 100 0 99.66 1.24 GCF_024181205.1 2273 2337 2337 7 6 50 1 Treponema_vincentii_clade_029_homd_HMT_029 GCA_024181325.1 HMT-667 OMZ 305 Named Cultivated Oral (Abundance: Medium) HMT-667 Treponema medium OMZ 305 1 2629551 45.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/325/GCA_024181325.1_ASM2418132v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema sp018336815 PRJNA284866 1659192 SAMN03733597 ASM2418132v1 Complete Genome Canu v. 1.8; pilon v. 1.22 2015-05-25T23:40:04.000 USA: Philadelphia Illumina HiSeq; PacBio RSII The University of Hong Kong 731.0x 100 0 99.55 1.27 GCF_024181325.1 2284 2346 2346 6 6 49 1 Treponema_medium_homd_HMT_667 GCA_024181425.1 HMT-584 OT2B Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola OT2B 1 2841718 37.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/425/GCA_024181425.1_ASM2418142v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA284866 158 SAMN11253866 ASM2418142v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2019-03-26T03:32:05.260 USA subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 376.0x 97.25 100 0 99.95 0.1 GCF_024181425.1 2593 2653 2653 9 6 44 1 Treponema_denticola_homd_HMT_584 GCA_024181445.1 HMT-584 CD-1 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola CD-1 1 2892458 37.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/445/GCA_024181445.1_ASM2418144v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA284866 158 SAMN11253854 ASM2418144v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2019-03-26T03:32:05.000 USA subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 819.0x 97.6 99.73 0 99.97 0.04 GCF_024181445.1 2652 2711 2711 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_024181485.1 HMT-584 OMZ 852 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola OMZ 852 1 2882651 37.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/485/GCA_024181485.1_ASM2418148v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA284866 158 SAMN11253859 ASM2418148v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2019-03-26T03:32:05.127 China subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 869.0x 97.25 100 0 99.91 0.16 GCF_024181485.1 2689 2747 2747 7 6 44 1 Treponema_denticola_homd_HMT_584 GCA_024181505.1 HMT-584 OMZ 898 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola OMZ 898 1 2817074 37.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/505/GCA_024181505.1_ASM2418150v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA284866 158 SAMN11253860 ASM2418150v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2019-03-26T03:32:05.143 Switzerland subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 636.0x 97.31 100 0 99.97 0.07 GCF_024181505.1 2568 2631 2631 12 6 44 1 Treponema_denticola_homd_HMT_584 GCA_024181545.1 HMT-584 OMZ 850 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola OMZ 850 1 2747952 37.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/545/GCA_024181545.1_ASM2418154v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA284866 158 SAMN11253858 ASM2418154v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2019-03-26T03:32:05.110 China subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 1136.0x 97.32 100 0 99.33 0.07 GCF_024181545.1 2489 2549 2549 9 6 44 1 Treponema_denticola_homd_HMT_584 GCA_024181625.1 HMT-584 OKA3 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola OKA3 1 2853053 37.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/625/GCA_024181625.1_ASM2418162v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA284866 158 SAMN11253865 ASM2418162v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2019-03-26T03:32:05.237 Japan subgingival plaque Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 750.0x 97.2 100 0 99.81 0.06 GCF_024181625.1 2624 2683 2683 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_024181645.1 HMT-584 OMZ 854 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola OMZ 854 1 2782312 37.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/645/GCA_024181645.1_ASM2418164v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola_A PRJNA284866 158 SAMN14933810 ASM2418164v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2020-05-15T14:28:04.847 China acute necrotizing ulcerative gingivitis lesion Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 998.0x 94.19 100 0.81 99.98 0.09 GCF_024181645.1 2555 2614 2614 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_024181665.1 HMT-584 B152 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola B152 1 2758702 38.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/181/665/GCA_024181665.1_ASM2418166v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA284866 2749432 SAMN15402430 ASM2418166v1 Complete Genome SPAdes v. 3.12.0; Unicycler v. 0.4.5; tblastn v. 2.6.0+; bowtie v. 2.3.4.1; samtools v. 1.8; pilon v 2020-06-30T01:56:05.620 missing Illumina HiSeq; Oxford Nanopore MiniION The University of Hong Kong 977.0x 100 0 99.88 0.16 GCF_024181665.1 2533 2592 2592 8 6 44 1 Treponema_denticola_homd_HMT_584 GCA_024204705.1 HMT-601 TMDU-41 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis TMDU-41 5 2472870 32.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/204/705/GCA_024204705.1_ASM2420470v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA800235 1282 SAMN26514226 ASM2420470v1 Complete Genome Unicycler hybrid assembley v. 0.4.8 2022-03-07T22:04:04.607 Japan blood Illumina MiSeq; Oxford Nanopore Tokyo Medical And Dental University 283.0x 99.66 99.81 0.56 99.97 0.03 GCF_024204705.1 2232 2394 2394 82 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_024204745.1 HMT-601 TMDU-137 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis TMDU-137 6 2573209 32.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/204/745/GCA_024204745.1_ASM2420474v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA800235 1282 SAMN26515364 ASM2420474v1 Complete Genome Unicycler hybrid assembley v. 0.4.8 2022-03-08T01:24:04.830 Japan blood Illumina MiSeq; Oxford Nanopore Tokyo Medical And Dental University 249.0x 99.54 99.81 0.06 99.99 0.23 GCF_024204745.1 2377 2545 2545 88 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_024204765.1 HMT-601 TMDU-190 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis TMDU-190 2 2734660 32.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/204/765/GCA_024204765.1_ASM2420476v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA800235 1282 SAMN26515377 ASM2420476v1 Complete Genome Unicycler hybrid assembley v. 0.4.8 2022-03-08T01:31:05.003 Japan blood Illumina MiSeq; Oxford Nanopore Tokyo Medical And Dental University 469.0x 99.52 99.81 0.02 100 0.14 GCF_024204765.1 2586 2744 2744 82 16 59 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_024204785.1 HMT-601 TMDU-265 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis TMDU-265 4 2761052 32.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/204/785/GCA_024204785.1_ASM2420478v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA800235 1282 SAMN26517650 ASM2420478v1 Complete Genome Unicycler hybrid assembley v. 0.4.8 2022-03-08T02:48:05.203 Japan blood Illumina MiSeq; Oxford Nanopore Tokyo Medical And Dental University 838.0x 99.53 99.81 0.02 100 0.21 GCF_024204785.1 2600 2762 2762 82 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_024204845.1 HMT-601 TMDU-323 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis TMDU-323 3 2485634 32.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/204/845/GCA_024204845.1_ASM2420484v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA800235 1282 SAMN26517682 ASM2420484v1 Complete Genome Unicycler hybrid assembley v. 0.4.8 2022-03-08T03:07:04.563 Japan blood Illumina MiSeq; Oxford Nanopore Tokyo Medical And Dental University 521.0x 99.53 99.81 0.06 99.98 0.22 GCF_024204845.1 2264 2424 2424 80 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_024204865.1 HMT-601 TMDU-2014-62 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis TMDU-2014-62 2 2646864 32.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/204/865/GCA_024204865.1_ASM2420486v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA800235 1282 SAMN26518685 ASM2420486v1 Complete Genome Unicycler hybrid assembley v. 0.4.8 2022-03-08T03:18:05.420 Japan blood Illumina MiSeq; Oxford Nanopore Tokyo Medical And Dental University 576.0x 99.53 99.81 0.02 99.99 0.18 GCF_024204865.1 2467 2627 2627 80 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_024204905.1 HMT-601 TSM-18 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis TSM-18 4 2659990 32.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/204/905/GCA_024204905.1_ASM2420490v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA800235 1282 SAMN26519684 ASM2420490v1 Complete Genome Unicycler hybrid assembley v. 0.4.8 2022-03-08T03:23:52.690 Japan blood Illumina MiSeq; Oxford Nanopore Tokyo Medical And Dental University 706.0x 99.61 99.81 0.09 99.99 0.09 GCF_024204905.1 2514 2675 2675 81 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_024204925.1 HMT-601 TSM-36 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis TSM-36 3 2602631 32.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/204/925/GCA_024204925.1_ASM2420492v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA800235 1282 SAMN26520678 ASM2420492v1 Complete Genome Unicycler hybrid assembley v. 0.4.8 2022-03-08T03:30:10.580 Japan blood Illumina MiSeq; Oxford Nanopore Tokyo Medical And Dental University 742.0x 99.63 99.81 0.09 99.99 0.05 GCF_024204925.1 2381 2545 2545 82 19 62 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_024204965.1 HMT-601 TSM-50 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis TSM-50 2 2503340 32.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/204/965/GCA_024204965.1_ASM2420496v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA800235 1282 SAMN26520718 ASM2420496v1 Complete Genome Unicycler hybrid assembley v. 0.4.8 2022-03-08T03:40:04.817 Japan blood Illumina MiSeq; Oxford Nanopore Tokyo Medical And Dental University 830.0x 99.59 99.81 0 99.99 0.07 GCF_024204965.1 2255 2415 2415 80 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_024205685.1 HMT-476 HP0048 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava HP0048 1 2243952 49.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/205/685/GCA_024205685.1_ASM2420568v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJNA714914 28449 SAMN18320771 ASM2420568v1 Complete Genome HGAP v. 3 2021-03-16T13:34:04.097 Singapore: Singapore PacBio RSII Nanyang Technological University 222.3x 93.88 100 1.13 100 1.29 GCF_024205685.1 2052 2168 2168 43 12 60 1 Neisseria_subflava_homd_HMT_476 GCA_024205725.1 HMT-610 TT0073 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens TT0073 1 2409157 49.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/205/725/GCA_024205725.1_ASM2420572v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJNA714914 28449 SAMN18320768 ASM2420572v1 Complete Genome HGAP v. 3 2021-03-16T13:34:04.053 Singapore: Singapore PacBio RSII Nanyang Technological University 245.5x 95.62 99.92 0.23 99.99 1.5 GCF_024205725.1 2308 2408 2408 26 12 61 1 Neisseria_flavescens_homd_HMT_610 GCA_024205745.1 HMT-610 HP0015 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens HP0015 1 2213981 49.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/205/745/GCA_024205745.1_ASM2420574v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJNA714914 28449 SAMN18320767 ASM2420574v1 Complete Genome HGAP v. 3 2021-03-16T13:34:04.040 Singapore: Singapore PacBio RSII Nanyang Technological University 206.3x 95.6 99.47 0.11 99.99 0.01 GCF_024205745.1 2087 2204 2204 46 12 58 1 Neisseria_flavescens_homd_HMT_610 GCA_024205785.1 HMT-610 HP0069 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens HP0069 1 2277784 48.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/205/785/GCA_024205785.1_ASM2420578v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJNA714914 28449 SAMN18320765 ASM2420578v1 Complete Genome HGAP v. 3 2021-03-16T13:34:04.013 Singapore: Singapore PacBio RSII Nanyang Technological University 240.4x 95.66 99.92 0.83 100 0.5 GCF_024205785.1 2123 2241 2241 40 15 62 1 Neisseria_flavescens_homd_HMT_610 GCA_024220095.1 HMT-202 SSMR1 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum SSMR1 1 2443126 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/220/095/GCA_024220095.1_ASM2422009v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA855465 76857 SAMN29492362 ASM2422009v1 Complete Genome GS De Novo Assembler v. 2.5 2022-07-04T13:31:03.990 India Sewage 454 Bharat 21.0x 99.98 100 0 99.97 0.13 GCF_024220095.1 2390 2476 2476 23 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_024294625.1 HMT-411 CF8_Ac3-4 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac3-4 24 2106449 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/294/625/GCA_024294625.1_ASM2429462v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA855844 1318 SAMN29500146 ASM2429462v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.210 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.12 100 0.87 99.98 0.02 GCF_024294625.1 JANCON01 2036 2116 2116 33 2 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024294705.1 HMT-638 CF9-1 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 CF9-1 13 1792476 39.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/294/705/GCA_024294705.1_ASM2429470v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_M PRJNA855844 2963149 SAMN29500155 ASM2429470v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.306 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0.34 100 0.1 GCF_024294705.1 JANCOE01 1702 1781 1781 50 2 26 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_024294705.1 HMT-638 CF9-1 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 CF9-1 13 1792476 39.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/294/705/GCA_024294705.1_ASM2429470v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_M PRJNA855844 2963149 SAMN29500155 ASM2429470v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.306 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0.34 100 0.1 GCF_024294705.1 JANCOE01 1702 1781 1781 50 2 26 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_024294725.1 HMT-411 CF8_Ac3-6 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac3-6 21 2069403 42.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/294/725/GCA_024294725.1_ASM2429472v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA855844 1318 SAMN29500147 ASM2429472v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.220 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.12 100 0.7 99.97 0.02 GCF_024294725.1 JANCOM01 1986 2066 2066 33 2 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024294745.1 HMT-638 CF9-3 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 CF9-3 12 1792604 39.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/294/745/GCA_024294745.1_ASM2429474v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_M PRJNA855844 2963148 SAMN29500156 ASM2429474v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.316 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0.34 100 0.1 GCF_024294745.1 JANCOD01 1703 1782 1782 50 2 26 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_024294745.1 HMT-638 CF9-3 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 CF9-3 12 1792604 39.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/294/745/GCA_024294745.1_ASM2429474v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_M PRJNA855844 2963148 SAMN29500156 ASM2429474v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.316 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0.34 100 0.1 GCF_024294745.1 JANCOD01 1703 1782 1782 50 2 26 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_024295365.1 HMT-411 CF8_Ac2-6 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac2-6 20 2107598 41.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/365/GCA_024295365.1_ASM2429536v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA855844 1318 SAMN29500144 ASM2429536v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.190 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.12 100 0.87 99.98 0.02 GCF_024295365.1 JANCOP01 2038 2120 2120 33 3 45 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295385.1 HMT-638 CF4-3 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 CF4-3 19 1732098 39.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/385/GCA_024295385.1_ASM2429538v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_I PRJNA855844 2963160 SAMN29500120 ASM2429538v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.906 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0.05 100 0.06 GCF_024295385.1 JANCPN01 1703 1788 1788 39 3 42 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_024295385.1 HMT-638 CF4-3 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 CF4-3 19 1732098 39.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/385/GCA_024295385.1_ASM2429538v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_I PRJNA855844 2963160 SAMN29500120 ASM2429538v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.906 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0.05 100 0.06 GCF_024295385.1 JANCPN01 1703 1788 1788 39 3 42 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_024295425.1 HMT-707 CF7_Ac2-6 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac2-6 24 1989258 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/425/GCA_024295425.1_ASM2429542v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500128 ASM2429542v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.010 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.53 99.87 0.35 99.99 0.08 GCF_024295425.1 JANCPF01 1909 2000 2000 45 3 42 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_024295425.1 HMT-707 CF7_Ac2-6 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac2-6 24 1989258 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/425/GCA_024295425.1_ASM2429542v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500128 ASM2429542v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.010 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.53 99.87 0.35 99.99 0.08 GCF_024295425.1 JANCPF01 1909 2000 2000 45 3 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_024295485.1 HMT-707 CF7_Ac3-15 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac3-15 20 1990038 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/485/GCA_024295485.1_ASM2429548v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500134 ASM2429548v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.080 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.53 99.87 0.35 99.99 0.08 GCF_024295485.1 JANCOZ01 1909 2001 2001 45 4 42 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_024295485.1 HMT-707 CF7_Ac3-15 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac3-15 20 1990038 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/485/GCA_024295485.1_ASM2429548v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500134 ASM2429548v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.080 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.53 99.87 0.35 99.99 0.08 GCF_024295485.1 JANCOZ01 1909 2001 2001 45 4 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_024295505.1 HMT-411 CF8_Ac2-1 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac2-1 28 2106909 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/505/GCA_024295505.1_ASM2429550v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA855844 1318 SAMN29500140 ASM2429550v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.147 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.12 100 0.87 99.98 0.02 GCF_024295505.1 JANCOT01 2039 2121 2121 33 3 45 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295525.1 HMT-755 CF7-4 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius CF7-4 26 2130083 39.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/525/GCA_024295525.1_ASM2429552v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA855844 1304 SAMN29500121 ASM2429552v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.917 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 95.88 99.84 1.02 100 0.06 GCF_024295525.1 JANCPM01 1941 2004 2004 33 3 26 1 Streptococcus_salivarius_homd_HMT_755 GCA_024295545.1 HMT-411 CF7_Ac1-10 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF7_Ac1-10 22 2104362 41.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/545/GCA_024295545.1_ASM2429554v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA855844 1318 SAMN29500126 ASM2429554v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.987 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.11 100 0.87 99.98 0.02 GCF_024295545.1 JANCPH01 2033 2114 2114 33 2 45 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295565.1 HMT-411 CF8_Ac1-9 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac1-9 15 2113565 41.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/565/GCA_024295565.1_ASM2429556v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_X PRJNA855844 2963157 SAMN29500135 ASM2429556v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.090 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0.11 99.99 0.02 GCF_024295565.1 JANCOY01 1979 2068 2068 40 2 46 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295585.1 HMT-411 CF8_Ac3-14 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac3-14 21 2069854 42.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/585/GCA_024295585.1_ASM2429558v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA855844 1318 SAMN29500148 ASM2429558v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.230 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.11 100 1.04 99.97 0.02 GCF_024295585.1 JANCOL01 1988 2068 2068 33 2 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295605.1 HMT-707 CF7_Ac3-11 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac3-11 21 1988975 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/605/GCA_024295605.1_ASM2429560v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500132 ASM2429560v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.057 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.53 99.87 0.35 99.99 0.08 GCF_024295605.1 JANCPB01 1905 1997 1997 45 4 42 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_024295605.1 HMT-707 CF7_Ac3-11 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac3-11 21 1988975 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/605/GCA_024295605.1_ASM2429560v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500132 ASM2429560v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.057 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.53 99.87 0.35 99.99 0.08 GCF_024295605.1 JANCPB01 1905 1997 1997 45 4 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_024295645.1 HMT-707 CF7-6 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7-6 13 2003414 41.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/645/GCA_024295645.1_ASM2429564v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000298695 PRJNA855844 1303 SAMN29500124 ASM2429564v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.957 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.98 99.87 0.2 100 0.04 GCF_024295645.1 JANCPJ01 1906 1980 1980 39 2 32 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_024295645.1 HMT-707 CF7-6 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7-6 13 2003414 41.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/645/GCA_024295645.1_ASM2429564v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000298695 PRJNA855844 1303 SAMN29500124 ASM2429564v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.957 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.98 99.87 0.2 100 0.04 GCF_024295645.1 JANCPJ01 1906 1980 1980 39 2 32 1 Streptococcus_oralis_HMT_071_398_707 GCA_024295665.1 HMT-061 CF8_St5-17 Named Cultivated Oral (Abundance: Medium) HMT-061 Streptococcus infantis clade-061 CF8_St5-17 17 1690562 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/665/GCA_024295665.1_ASM2429566v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp013394695 PRJNA855844 2963155 SAMN29500139 ASM2429566v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.136 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0 99.99 0.02 GCF_024295665.1 JANCOU01 1606 1690 1690 36 3 44 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_024295665.1 HMT-061 CF8_St5-17 Named Cultivated Oral (Abundance: Medium) HMT-061 Streptococcus infantis clade-061 CF8_St5-17 17 1690562 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/665/GCA_024295665.1_ASM2429566v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp013394695 PRJNA855844 2963155 SAMN29500139 ASM2429566v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.136 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0 99.99 0.02 GCF_024295665.1 JANCOU01 1606 1690 1690 36 3 44 1 Streptococcus_infantis_clade_061_homd_HMT_061 GCA_024295685.1 HMT-707 CF7_Ac3-8 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac3-8 19 1989556 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/685/GCA_024295685.1_ASM2429568v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500131 ASM2429568v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.047 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.54 99.87 0.35 99.99 0.08 GCF_024295685.1 JANCPC01 1908 2001 2001 45 4 43 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_024295685.1 HMT-707 CF7_Ac3-8 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac3-8 19 1989556 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/685/GCA_024295685.1_ASM2429568v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500131 ASM2429568v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.047 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.54 99.87 0.35 99.99 0.08 GCF_024295685.1 JANCPC01 1908 2001 2001 45 4 43 1 Streptococcus_oralis_HMT_071_398_707 GCA_024295705.1 HMT-444 CF8_Ac1-10 Named Cultivated Oral (Abundance: High) HMT-444 Streptococcus infantis clade-444 CF8_Ac1-10 13 1689662 39.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/705/GCA_024295705.1_ASM2429570v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_B PRJNA855844 68892 SAMN29500138 ASM2429570v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.127 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 89.73 100 0 99.98 0.01 GCF_024295705.1 JANCOV01 1663 1742 1742 33 3 42 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_024295705.1 HMT-444 CF8_Ac1-10 Named Cultivated Oral (Abundance: High) HMT-444 Streptococcus infantis clade-444 CF8_Ac1-10 13 1689662 39.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/705/GCA_024295705.1_ASM2429570v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_B PRJNA855844 68892 SAMN29500138 ASM2429570v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.127 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 89.73 100 0 99.98 0.01 GCF_024295705.1 JANCOV01 1663 1742 1742 33 3 42 1 Streptococcus_infantis_clade_444_homd_HMT_444 GCA_024295715.1 HMT-411 CF8_Ac2-3 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac2-3 26 2106296 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/715/GCA_024295715.1_ASM2429571v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA855844 1318 SAMN29500141 ASM2429571v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.160 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.12 100 0.87 99.98 0.02 GCF_024295715.1 JANCOS01 2037 2117 2117 33 2 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295745.1 HMT-411 CF8_Ac3-15 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac3-15 28 2106743 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/745/GCA_024295745.1_ASM2429574v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA855844 1318 SAMN29500149 ASM2429574v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.240 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.12 100 0.87 99.98 0.02 GCF_024295745.1 JANCOK01 2037 2118 2118 33 3 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295765.1 HMT-411 CF8_Ac2-5 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac2-5 24 2107070 41.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/765/GCA_024295765.1_ASM2429576v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA855844 1318 SAMN29500143 ASM2429576v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.180 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.11 100 0.87 99.98 0.02 GCF_024295765.1 JANCOQ01 2037 2117 2117 33 2 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295785.1 HMT-411 CF10-6 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF10-6 88 2293977 41.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/785/GCA_024295785.1_ASM2429578v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA855844 1318 SAMN29500118 ASM2429578v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.883 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.14 100 3.45 99.99 4.51 GCF_024295785.1 JANCPP01 2216 2300 2300 41 3 39 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295845.1 HMT-707 CF8-6 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF8-6 17 1998799 40.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/845/GCA_024295845.1_ASM2429584v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BO PRJNA855844 2963150 SAMN29500154 ASM2429584v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.296 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 99.87 0.4 99.97 0 GCF_024295845.1 JANCOF01 1938 2006 2006 39 3 25 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_024295845.1 HMT-707 CF8-6 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF8-6 17 1998799 40.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/845/GCA_024295845.1_ASM2429584v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BO PRJNA855844 2963150 SAMN29500154 ASM2429584v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.296 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 99.87 0.4 99.97 0 GCF_024295845.1 JANCOF01 1938 2006 2006 39 3 25 1 Streptococcus_oralis_HMT_071_398_707 GCA_024295855.1 HMT-411 CF8_Ac2-4 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac2-4 26 2106453 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/855/GCA_024295855.1_ASM2429585v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA855844 1318 SAMN29500142 ASM2429585v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.170 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.12 100 0.87 99.98 0.02 GCF_024295855.1 JANCOR01 2037 2118 2118 33 2 45 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295885.1 HMT-444 CF8_Ac1-8 Named Cultivated Oral (Abundance: High) HMT-444 Streptococcus infantis clade-444 CF8_Ac1-8 12 1683756 39.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/885/GCA_024295885.1_ASM2429588v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_B PRJNA855844 68892 SAMN29500137 ASM2429588v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.113 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 89.73 100 0 99.98 0.01 GCF_024295885.1 JANCOW01 1660 1739 1739 33 3 42 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_024295885.1 HMT-444 CF8_Ac1-8 Named Cultivated Oral (Abundance: High) HMT-444 Streptococcus infantis clade-444 CF8_Ac1-8 12 1683756 39.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/885/GCA_024295885.1_ASM2429588v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_B PRJNA855844 68892 SAMN29500137 ASM2429588v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.113 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 89.73 100 0 99.98 0.01 GCF_024295885.1 JANCOW01 1660 1739 1739 33 3 42 1 Streptococcus_infantis_clade_444_homd_HMT_444 GCA_024295925.1 HMT-411 CF7-3 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF7-3 22 2072535 42.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/925/GCA_024295925.1_ASM2429592v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA855844 1318 SAMN29500123 ASM2429592v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.947 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.11 100 0.7 99.98 0.02 GCF_024295925.1 JANCPK01 1991 2061 2061 33 2 34 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024295945.1 HMT-707 CF7_Ac2-11 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac2-11 25 1989212 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/945/GCA_024295945.1_ASM2429594v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500129 ASM2429594v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.023 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.53 99.87 0.35 99.99 0.08 GCF_024295945.1 JANCPE01 1906 1999 1999 45 4 43 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_024295945.1 HMT-707 CF7_Ac2-11 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac2-11 25 1989212 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/945/GCA_024295945.1_ASM2429594v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500129 ASM2429594v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.023 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.53 99.87 0.35 99.99 0.08 GCF_024295945.1 JANCPE01 1906 1999 1999 45 4 43 1 Streptococcus_oralis_HMT_071_398_707 GCA_024295965.1 HMT-707 CF7_Ac3-14 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac3-14 22 1989651 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/965/GCA_024295965.1_ASM2429596v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500133 ASM2429596v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.070 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.54 99.87 0.35 99.99 0.08 GCF_024295965.1 JANCPA01 1908 2000 2000 45 4 42 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_024295965.1 HMT-707 CF7_Ac3-14 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac3-14 22 1989651 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/965/GCA_024295965.1_ASM2429596v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500133 ASM2429596v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.070 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.54 99.87 0.35 99.99 0.08 GCF_024295965.1 JANCPA01 1908 2000 2000 45 4 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_024295985.1 HMT-638 CF4-2 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 CF4-2 21 1735527 39.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/985/GCA_024295985.1_ASM2429598v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_I PRJNA855844 2963161 SAMN29500119 ASM2429598v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.893 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0.05 100 0.06 GCF_024295985.1 JANCPO01 1705 1795 1795 39 3 47 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_024295985.1 HMT-638 CF4-2 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 CF4-2 21 1735527 39.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/295/985/GCA_024295985.1_ASM2429598v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_I PRJNA855844 2963161 SAMN29500119 ASM2429598v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.893 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 100 0.05 100 0.06 GCF_024295985.1 JANCPO01 1705 1795 1795 39 3 47 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_024296005.1 HMT-707 CF7_Ac2-13 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac2-13 23 1988828 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/296/005/GCA_024296005.1_ASM2429600v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500130 ASM2429600v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.037 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.53 99.87 0.35 99.99 0.08 GCF_024296005.1 JANCPD01 1905 1998 1998 45 4 43 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_024296005.1 HMT-707 CF7_Ac2-13 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CF7_Ac2-13 23 1988828 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/296/005/GCA_024296005.1_ASM2429600v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_H PRJNA855844 1303 SAMN29500130 ASM2429600v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.037 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.53 99.87 0.35 99.99 0.08 GCF_024296005.1 JANCPD01 1905 1998 1998 45 4 43 1 Streptococcus_oralis_HMT_071_398_707 GCA_024296025.1 HMT-411 CF8_Ac3-3 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis CF8_Ac3-3 23 2068820 42.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/296/025/GCA_024296025.1_ASM2429602v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA855844 1318 SAMN29500145 ASM2429602v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:05.200 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 94.12 100 0.7 99.97 0.02 GCF_024296025.1 JANCOO01 1984 2065 2065 33 2 45 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024296065.1 HMT-755 CF7-5 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius CF7-5 34 2137598 39.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/296/065/GCA_024296065.1_ASM2429606v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA855844 1304 SAMN29500122 ASM2429606v1 Contig shovill-skesa v. 1.1.0 2022-07-05T10:24:04.937 United Kingdom: Liverpool Illumina HiSeq Xian Jiaotong-Liverpool University 100.0x 95.87 99.84 1.36 99.99 0.07 GCF_024296065.1 JANCPL01 1946 2025 2025 33 4 41 1 Streptococcus_salivarius_homd_HMT_755 GCA_024329925.1 HMT-979 HF2130 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-979 Prevotella copri HF2130 85 3615176 45.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/329/925/GCA_024329925.1_ASM2432992v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella copri_A PRJNA792012 165179 SAMN29625269 ASM2432992v1 Contig SOAPdenovo v. 2.4.0 2022-07-10T08:41:05.586 China: Beijing feces Illumina HiSeq China CDC 270.0x 88.83 98.14 3.11 99.99 0.36 GCF_024329925.1 JANDXG01 2976 3076 3076 15 9 75 1 Prevotella_copri_homd_HMT_979 GCA_024330295.1 HMT-979 HF2112 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-979 Prevotella copri HF2112 82 3602531 45.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/330/295/GCA_024330295.1_ASM2433029v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella copri_A PRJNA792012 165179 SAMN29625263 ASM2433029v1 Contig SOAPdenovo v. 2.4.0 2022-07-10T08:41:05.533 China: Beijing feces Illumina HiSeq China CDC 270.0x 88.83 98.14 1.76 99.99 0.13 GCF_024330295.1 JANDXA01 2967 3063 3063 16 8 71 1 Prevotella_copri_homd_HMT_979 GCA_024330365.1 HMT-979 HF2107 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-979 Prevotella copri HF2107 85 3654088 45.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/330/365/GCA_024330365.1_ASM2433036v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella copri_A PRJNA792012 165179 SAMN29625262 ASM2433036v1 Contig SOAPdenovo v. 2.4.0 2022-07-10T08:41:05.526 China: Beijing feces Illumina HiSeq China CDC 270.0x 88.85 98.14 2.43 100 0.68 GCF_024330365.1 JANDWZ01 3002 3098 3098 15 8 72 1 Prevotella_copri_homd_HMT_979 GCA_024330435.1 HMT-979 HF2100 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-979 Prevotella copri HF2100 88 3597500 45.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/330/435/GCA_024330435.1_ASM2433043v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella copri_A PRJNA792012 165179 SAMN29625261 ASM2433043v1 Contig SOAPdenovo v. 2.4.0 2022-07-10T08:41:05.516 China: Beijing feces Illumina HiSeq China CDC 270.0x 88.84 98.14 1.76 99.98 0.13 GCF_024330435.1 JANDWY01 2959 3052 3052 15 8 69 1 Prevotella_copri_homd_HMT_979 GCA_024330665.1 HMT-979 HF2128 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-979 Prevotella copri HF2128 83 3663674 45.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/330/665/GCA_024330665.1_ASM2433066v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella copri_A PRJNA792012 165179 SAMN29625267 ASM2433066v1 Contig SOAPdenovo v. 2.4.0 2022-07-10T08:41:05.570 China: Beijing feces Illumina HiSeq China CDC 270.0x 88.85 98.14 3.45 99.98 2.7 GCF_024330665.1 JANDXE01 3009 3107 3107 16 8 72 2 Prevotella_copri_homd_HMT_979 GCA_024330875.1 HMT-979 HF2117 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-979 Prevotella copri HF2117 86 3675783 45.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/330/875/GCA_024330875.1_ASM2433087v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella copri_A PRJNA792012 165179 SAMN29625264 ASM2433087v1 Contig SOAPdenovo v. 2.4.0 2022-07-10T08:41:05.543 China: Beijing feces Illumina HiSeq China CDC 270.0x 88.85 98.14 3.45 99.99 2.19 GCF_024330875.1 JANDXB01 3053 3148 3148 15 8 71 1 Prevotella_copri_homd_HMT_979 GCA_024330905.1 HMT-979 HF2119 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-979 Prevotella copri HF2119 89 3609956 45.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/330/905/GCA_024330905.1_ASM2433090v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella copri_A PRJNA792012 165179 SAMN29625265 ASM2433090v1 Contig SOAPdenovo v. 2.4.0 2022-07-10T08:41:05.550 China: Beijing feces Illumina HiSeq China CDC 270.0x 88.86 98.14 2.09 99.99 0.22 GCF_024330905.1 JANDXC01 2966 3061 3061 15 8 71 1 Prevotella_copri_homd_HMT_979 GCA_024384655.1 HMT-944 MRSN940243 Named Cultivated Oral (Abundance: Medium) HMT-944 Haemophilus sputorum MRSN940243 40 2024133 39.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/384/655/GCA_024384655.1_ASM2438465v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A sputorum PRJNA859155 1078480 SAMN29768393 ASM2438465v1 Contig Newbler v. 2.9 2022-07-15T15:01:05.640 USA: Maryland blood Illumina MiSeq Walter Reed Army Institute of Research 132.0x 97.37 99.81 0 100 0 GCF_024384655.1 JANFLW01 1914 1991 1991 23 4 49 1 Haemophilus_sputorum_homd_HMT_944 GCA_024399395.1 HMT-576 TCV107 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus TCV107 1 1980997 38.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/399/395/GCA_024399395.1_ASM2439939v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA454548 76860 SAMN09005831 ASM2439939v1 Complete Genome Canu v. 1.5 2018-05-01T08:26:08.473 Taiwan Abscess Oxford Nanopore National Chung Cheng University 125.0x 97.67 98.64 0.56 99.95 0.37 GCF_024399395.1 1939 2042 2042 31 12 59 1 Streptococcus_constellatus_homd_HMT_576 GCA_024399415.1 HMT-707 CCUG 53468 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CCUG 53468 1 2002022 41.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/399/415/GCA_024399415.1_ASM2439941v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CS PRJNA305687 1303 SAMN09081250 ASM2439941v1 Complete Genome HGAP v. 3 2018-05-07T10:47:05.353 Sweden: Vastra Gotaland, Gothe saliva PacBio University of Gothenburg - CCUG 395.0x 95.09 99.78 0.4 100 0.04 GCF_024399415.1 1834 1950 1950 42 12 61 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_024399415.1 HMT-707 CCUG 53468 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis CCUG 53468 1 2002022 41.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/399/415/GCA_024399415.1_ASM2439941v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CS PRJNA305687 1303 SAMN09081250 ASM2439941v1 Complete Genome HGAP v. 3 2018-05-07T10:47:05.353 Sweden: Vastra Gotaland, Gothe saliva PacBio University of Gothenburg - CCUG 395.0x 95.09 99.78 0.4 100 0.04 GCF_024399415.1 1834 1950 1950 42 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_024400855.1 HMT-743 OMZ 847 Named Cultivated Oral (Abundance: Scarce) HMT-743 Treponema putidum OMZ 847 1 2951713 37.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/400/855/GCA_024400855.1_ASM2440085v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B putidum PRJNA284866 221027 SAMN11253851 ASM2440085v1 Complete Genome Celera Assembler v. Canu 1.8, correction with pilon 1.22 2019-03-26T03:32:04.946 China subgingival plaque Oxford Nanopore MiniION and illumina HiSeq The University of Hong Kong 1278.0x 98.3 100 0 99.99 0.33 GCF_024400855.1 2727 2790 2790 11 6 45 1 Treponema_putidum_homd_HMT_743 GCA_024401005.1 HMT-743 OMZ 846 Named Cultivated Oral (Abundance: Scarce) HMT-743 Treponema putidum OMZ 846 1 2915271 37.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/401/005/GCA_024401005.1_ASM2440100v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B putidum PRJNA284866 221027 SAMN11253850 ASM2440100v1 Complete Genome Celera Assembler v. Canu 1.8, correction with pilon 1.22 2019-03-26T03:32:04.926 China subgingival plaque Oxford Nanopore MiniION and illumina HiSeq The University of Hong Kong 845.0x 98.25 98.25 0 99.58 0.23 GCF_024401005.1 2799 2862 2862 11 6 45 1 Treponema_putidum_homd_HMT_743 GCA_024401155.1 HMT-743 OMZ 835 Named Cultivated Oral (Abundance: Scarce) HMT-743 Treponema putidum OMZ 835 1 2762635 37.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/401/155/GCA_024401155.1_ASM2440115v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B putidum PRJNA284866 221027 SAMN11253849 ASM2440115v1 Complete Genome Celera Assembler v. Canu 1.8, correction with pilon 1.22 2019-03-26T03:32:04.900 China subgingival plaque Oxford Nanopore MiniION and illumina HiSeq The University of Hong Kong 469.0x 98.3 100 0 99.99 0.33 GCF_024401155.1 2503 2566 2566 11 6 45 1 Treponema_putidum_homd_HMT_743 GCA_024461815.1 HMT-161 DFI.7.86 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula DFI.7.86 191 2139010 38.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/461/815/GCA_024461815.1_ASM2446181v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJNA792599 29466 SAMN28944564 ASM2446181v1 Contig SPAdes v. v3.14.0 2022-06-09T14:20:07.173 USA:Chicago fecal sample Illumina NextSeq University of Chicago 100.0x 96.77 100 1.47 99.99 0.19 GCF_024461815.1 JANGAJ01 1869 1932 1932 21 6 35 1 Veillonella_parvula_homd_HMT_161 GCA_024462405.1 HMT-965 DFI.6.34 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-965 Alistipes putredinis DFI.6.34 265 2806976 53.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/462/405/GCA_024462405.1_ASM2446240v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis PRJNA792599 28117 SAMN28944536 ASM2446240v1 Contig SPAdes v. v3.14.0 2022-06-09T14:20:06.803 USA:Chicago fecal sample Illumina NextSeq University of Chicago 100.0x 98.9 99.52 2.26 99.99 2.09 GCF_024462405.1 JANGBL01 2525 2599 2599 18 4 51 1 Alistipes_putredinis_homd_HMT_965 GCA_024462435.1 HMT-965 DFI.6.33 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-965 Alistipes putredinis DFI.6.33 90 2777827 53.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/462/435/GCA_024462435.1_ASM2446243v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis PRJNA792599 28117 SAMN28944535 ASM2446243v1 Contig SPAdes v. v3.14.0 2022-06-09T14:20:06.790 USA:Chicago fecal sample Illumina NextSeq University of Chicago 100.0x 98.9 99.52 1.44 99.99 1.16 GCF_024462435.1 JANGBM01 2520 2596 2596 20 4 51 1 Alistipes_putredinis_homd_HMT_965 GCA_024462625.1 HMT-602 DFI.6.114 Named Cultivated Oral (Abundance: Scarce) HMT-602 Slackia exigua DFI.6.114 104 2166447 61.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/462/625/GCA_024462625.1_ASM2446262v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia;s__Slackia exigua PRJNA792599 84109 SAMN28944525 ASM2446262v1 Contig SPAdes v. v3.14.0 2022-06-09T14:20:06.586 USA:Chicago fecal sample Illumina NextSeq University of Chicago 100.0x 97.88 100 0 98.3 1.5 GCF_024462625.1 JANGBW01 1789 1858 1858 13 5 50 1 Slackia_exigua_homd_HMT_602 GCA_024462755.1 HMT-542 DFI.6.106 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius DFI.6.106 95 2088515 35.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/462/755/GCA_024462755.1_ASM2446275v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA792599 1261 SAMN28944518 ASM2446275v1 Contig SPAdes v. v3.14.0 2022-06-09T14:20:06.483 USA:Chicago fecal sample Illumina NextSeq University of Chicago 100.0x 99.06 100 0 100 0.09 GCF_024462755.1 JANGBY01 1837 1915 1915 40 5 32 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_024463135.1 HMT-411 DFI.4.46 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis DFI.4.46 245 2204282 41.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/463/135/GCA_024463135.1_ASM2446313v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_S PRJNA792599 1318 SAMN28944500 ASM2446313v1 Contig SPAdes v. v3.14.0 2022-06-09T14:20:06.260 USA:Chicago fecal sample Illumina NextSeq University of Chicago 100.0x 94.27 100 0.54 100 0.02 GCF_024463135.1 JANGCW01 2070 2149 2149 36 3 39 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024463955.1 HMT-156 DFI.1.137 Named Cultivated Oral (Abundance: High) HMT-156 Veillonella nakazawae DFI.1.137 61 2099746 38.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/463/955/GCA_024463955.1_ASM2446395v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella nakazawae PRJNA792599 29466 SAMN28944460 ASM2446395v1 Contig SPAdes v. v3.14.0 2022-06-09T14:20:05.743 USA:Chicago fecal sample Illumina NextSeq University of Chicago 100.0x 87.3 100 0.95 99.98 0.85 JANGEJ01 1906 1979 1979 18 6 48 1 Veillonella_nakazawae_homd_HMT_156 GCA_024496285.1 HMT-858 C11 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-858 Comamonas testosteroni C11 7 6159340 60.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/496/285/GCA_024496285.1_ASM2449628v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas testosteroni_F PRJNA860803 2966554 SAMN29863000 ASM2449628v1 Complete Genome HGAP v. v4; CANU v. v1.7.1 2022-07-21T08:03:03.613 China:Changchun wastewater treatment plant Illumina NovaSeq; PacBio Sequel Northeast Normal University 275.0x 99.85 3.02 100 1.67 GCF_024496285.1 5571 5747 5747 40 27 108 1 Comamonas_testosteroni_homd_HMT_858 GCA_024498415.1 HMT-827 20 Named Cultivated Pathogen (Abundance: Scarce) HMT-827 Yersinia pestis 20 4 4804290 47.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/498/415/GCA_024498415.1_ASM2449841v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;s__Yersinia pestis PRJNA766484 632 SAMN21848824 ASM2449841v1 Complete Genome HGAP v. 4.0 2021-09-27T02:57:05.160 China: Gansu, Mongolian Autono PacBio Sequel National Institute for Communicable Disease Control and Prevention 100.0x 99.96 99.82 0 100 0.26 GCF_024498415.1 4264 4619 4619 263 19 72 1 Yersinia_pestis_homd_HMT_827 GCA_024539755.1 HMT-031 VH6958 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum VH6958 92 2589448 58.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/539/755/GCA_024539755.1_ASM2453975v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA704367 43765 SAMN18038700 ASM2453975v1 Scaffold SPAdes v. 3.10.0 2021-02-23T13:43:09.963 Spain: Santander clinical lumina HiSeq Federal University of Bahia 1827.0x 95.93 100 0 100 0.44 GCF_024539755.1 JAFJMB01 2266 2341 2341 12 6 56 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_024539775.1 HMT-031 VH4147_3 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum VH4147_3 142 2639734 58.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/539/775/GCA_024539775.1_ASM2453977v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA704367 43765 SAMN18038699 ASM2453977v1 Contig SPAdes v. 3.10.0 2021-02-23T13:43:09.950 Spain: Santander clinical lumina HiSeq Federal University of Bahia 1827.0x 96.01 100 0 100 0.39 GCF_024539775.1 JAFJMC01 2324 2399 2399 14 7 53 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_024539835.1 HMT-031 VH4147_1 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum VH4147_1 142 2663586 58.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/539/835/GCA_024539835.1_ASM2453983v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA704367 43765 SAMN18038698 ASM2453983v1 Scaffold SPAdes v. 3.10.0 2021-02-23T13:43:09.933 Spain: Santander clinical lumina HiSeq Federal University of Bahia 1827.0x 96.01 100 0 100 0.41 GCF_024539835.1 JAFJMD01 2361 2437 2437 14 3 58 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_024539855.1 HMT-031 VH2077 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum VH2077 133 2640866 58.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/539/855/GCA_024539855.1_ASM2453985v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA704367 43765 SAMN18038696 ASM2453985v1 Contig SPAdes v. 3.10.0 2021-02-23T13:43:09.903 Spain: Santander clinical lumina HiSeq Federal University of Bahia 1827.0x 96.05 100 2.38 100 0.53 GCF_024539855.1 JAFJMF01 2297 2365 2365 13 4 50 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_024539915.1 HMT-031 VH1773 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum VH1773 103 2641344 58.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/539/915/GCA_024539915.1_ASM2453991v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA704367 43765 SAMN18038695 ASM2453991v1 Contig SPAdes v. 3.10.0 2021-02-23T13:43:09.887 Spain: Santander clinical lumina HiSeq Federal University of Bahia 1827.0x 96.04 100 2.98 100 1.55 GCF_024539915.1 JAFJMG01 2305 2369 2369 13 4 46 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_024539935.1 HMT-031 VH2225 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum VH2225 130 2632447 58.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/539/935/GCA_024539935.1_ASM2453993v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA704367 43765 SAMN18038697 ASM2453993v1 Contig SPAdes v. 3.10.0 2021-02-23T13:43:09.920 Spain: Santander clinical lumina HiSeq Federal University of Bahia 1827.0x 96.05 100 1.49 100 2.68 GCF_024539935.1 JAFJME01 2286 2350 2350 13 4 46 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_024579795.1 HMT-604 JF3A-4253 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-604 Enterococcus faecalis JF3A-4253 7 3047376 37.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/579/795/GCA_024579795.1_ASM2457979v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis PRJNA863070 1351 SAMN30011847 ASM2457979v1 Complete Genome Unicycler v. 0.9.4b 2022-07-28T04:17:04.070 South Korea Rectal swab Illumina iSeq; Oxford Nanopore MinION Jeonbuk National University 103.0x 99.04 99.63 0 100 0.72 GCF_024579795.1 2912 3063 3063 73 12 65 1 Enterococcus_faecalis_homd_HMT_604 GCA_024584435.1 HMT-180 KHUD_008 Unnamed Cultivated Oral (Abundance: Medium) HMT-180 Schaalia sp. HMT-180 KHUD_008 1 2389595 66.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/584/435/GCA_024584435.1_ASM2458443v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000185285 PRJNA863379 1660 SAMN30032671 ASM2458443v1 Complete Genome IPA HiFi genome assembler v. 2.0 2022-07-28T22:23:04.117 South Korea: Seoul PacBio Sequel Kyung Hee University 14.6x 84.22 100 0.95 99.97 0.13 GCF_024584435.1 2057 2125 2125 10 9 48 1 Schaalia_sp_HMT_180_homd_HMT_180 GCA_024586465.1 HMT-127 706569/1 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis 706569/1 7 2494841 31.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/586/465/GCA_024586465.1_ASM2458646v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA848655 1290 SAMN29490094 ASM2458646v1 Contig Unicycler v. 0.4.0 2022-07-04T08:36:04.447 Italy Illumina HiSeq Polytechnic University of Marche Medical School 30.0x 99.09 98.81 0.78 99.99 0.07 GCF_024586465.1 JANASZ01 2459 2615 2615 74 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_024586525.1 HMT-063 BF-R-2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-063 Corynebacterium singulare BF-R-2 37 2804100 60.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/586/525/GCA_024586525.1_ASM2458652v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium singulare PRJNA837354 2943494 SAMN28196990 ASM2458652v1 Scaffold SPAdes v. 3.13.0 2022-05-12T02:25:03.890 South Korea: Daegu feces Illumina HiSeq Kyungpook National University 152.0x 99.78 0.55 99.99 0.04 GCF_024586525.1 JAMFTP01 2593 2659 2659 6 6 53 1 Corynebacterium_singulare_homd_HMT_063 GCA_024592595.1 HMT-974 GSH2021 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-974 Parabacteroides merdae GSH2021 2 4583119 45.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/592/595/GCA_024592595.1_ASM2459259v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae PRJNA864084 46503 SAMN30073203 ASM2459259v1 Contig Unicycle v. June-2022; SMRT Link v. v5.1.0 2022-07-31T22:55:04.000 China feces Illumina; Nanopore Southern Medical University 575.9x 99.72 99.62 0.19 99.98 0.51 GCF_024592595.1 JANJGS01 3813 3937 3937 24 19 80 1 Parabacteroides_merdae_homd_HMT_974 GCA_024600575.1 HMT-571 N3009-2YT Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-571 Burkholderia cepacia N3009-2YT 3 8425983 66.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/600/575/GCA_024600575.1_ASM2460057v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia cepacia PRJNA863394 292 SAMN30032823 ASM2460057v1 Complete Genome canu v. v1.5 2022-07-29T00:02:03.436 China:Guangxi Mixed soil samples Nanopore microbial pathogenic ecology group 405.0x 97.56 99.92 0.2 100 0.52 GCF_024600575.1 7529 7685 7685 60 18 77 1 Burkholderia_cepacia_homd_HMT_571 GCA_024655665.1 HMT-411 53.2.14 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 53.2.14 25 2144018 41.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/655/665/GCA_024655665.1_ASM2465566v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001813105 PRJNA849171 1318 SAMN29581410 ASM2465566v1 Scaffold Velvet v. 1.2.10 2022-07-07T15:33:04.120 USA: Goucher College, Baltimor skin mucus Illumina NextSeq Goucher College 121.0x 94.16 100 0.18 100 0 GCF_024655665.1 JANLGE01 2035 2097 2097 36 3 22 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_024655805.1 HMT-076 49.2.7 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri 49.2.7 23 2479650 32.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/655/805/GCA_024655805.1_ASM2465580v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA849171 1292 SAMN29581407 ASM2465580v1 Scaffold SPAdes v. 3.15.3 2022-07-07T15:33:04.080 USA: Goucher College, Baltimor skin mucus Illumina NextSeq Goucher College 137.0x 99.59 99.73 0.06 100 0.1 GCF_024655805.1 JANLGH01 2360 2449 2449 49 3 36 1 Staphylococcus_warneri_homd_HMT_076 GCA_024665075.1 HMT-529 LA-2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-529 Lactobacillus acidophilus LA-2 1 2030963 34.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/665/075/GCA_024665075.1_ASM2466507v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus PRJNA860779 1579 SAMN29862208 ASM2466507v1 Complete Genome Unicycler v. 0.4.7 2022-07-21T05:47:03.360 not applicable Oxford Nanopore MiniION, Illumina MiSeq Chr. Hansen A/S 130.0x 99.93 98.94 0 99.99 0.35 GCF_024665075.1 1897 2016 2016 43 15 60 1 Lactobacillus_acidophilus_homd_HMT_529 GCA_024665435.1 HMT-889 BIF195 Named Cultivated Vaginal (Abundance: Medium) HMT-889 Bifidobacterium breve BIF195 2 2336700 58.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/665/435/GCA_024665435.1_ASM2466543v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium breve PRJNA860779 1685 SAMN29862206 ASM2466543v1 Complete Genome Unicycler v. 0.4.7 2022-07-21T05:47:03.336 not applicable Oxford Nanopore MiniION, Illumina MiSeq Chr. Hansen A/S 69.0x 99.07 100 0 99.99 0.04 GCF_024665435.1 1932 2005 2005 11 8 53 1 Bifidobacterium_breve_homd_HMT_889 GCA_024668655.2 HMT-076 11 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri 11 2 2494910 32.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/668/655/GCA_024668655.2_ASM2466865v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA863437 1292 SAMN30074506 ASM2466865v2 Chromosome Flye and Medaka v. 2.9.1-b1780 and 1.7.13 2022-08-01T04:50:05.493 India: Alappuzha, Kerala shrimp Oxford Nanopore GridION Indian Institute of Technology Delhi 135.3x 99.59 99.73 0 99.98 0.02 GCF_024668655.2 2381 2511 2511 48 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_024668745.2 HMT-120 4 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 4 1 2575474 32.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/668/745/GCA_024668745.2_ASM2466874v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA863437 1283 SAMN30074499 ASM2466874v2 Chromosome Flye and Medaka v. 2.9.1-b1780 and 1.7.6 2022-08-01T04:50:05.430 India: Kodungallur, Kerala shrimp Oxford Nanopore GridION Indian Institute of Technology Delhi 126.0x 99.17 99.43 0.65 99.74 1.65 2579 2755 2755 95 19 61 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_024668785.2 HMT-120 6 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 6 2 2582674 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/668/785/GCA_024668785.2_ASM2466878v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA863437 1283 SAMN30074501 ASM2466878v2 Chromosome Flye and Medaka v. 2.9.1-b1780 and 1.7.8 2022-08-01T04:50:05.446 India: Alappuzha, Kerala shrimp Oxford Nanopore GridION Indian Institute of Technology Delhi 125.5x 99.16 99.62 0 99.98 0.66 GCF_024668785.2 2466 2658 2658 109 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_024668805.2 HMT-120 5 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 5 2 2663947 32.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/668/805/GCA_024668805.2_ASM2466880v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA863437 1283 SAMN30074500 ASM2466880v2 Chromosome Flye and Medaka v. 2.9.1-b1780 and 1.7.7 2022-08-01T04:50:05.436 India: Kodungallur, Kerala shrimp Oxford Nanopore GridION Indian Institute of Technology Delhi 139.0x 99.13 99.62 0 99.99 0.55 GCF_024668805.2 2553 2731 2731 96 19 62 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_024677885.1 HMT-156 Ds1651 Named Cultivated Oral (Abundance: High) HMT-156 Veillonella nakazawae Ds1651 14 2035419 38.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/677/885/GCA_024677885.1_ASM2467788v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella nakazawae PRJNA816276 2926616 SAMN26665602 ASM2467788v1 Contig SPAdes v. 3.13.0 2022-03-15T00:38:04.236 South Korea: Jeongeup Illumina Korea Research Institute of Bioscience and Biotechnology 146.5x 100 0 99.98 0.07 GCF_024677885.1 JALBWL01 1851 1925 1925 20 7 46 1 Veillonella_nakazawae_homd_HMT_156 GCA_024677965.1 HMT-531 25R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 25R 13 2260584 44.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/677/965/GCA_024677965.1_ASM2467796v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA787784 714 SAMN23845306 ASM2467796v1 Contig SPAdes v. 3.11 2021-12-10T08:35:04.717 Netherlands Dept of Medical Microbiology, University Medical Center Groningen Illumina MiSeq +Oxford Nanopore University of Groningen, University Medical Center Groningen 105.6x 97.47 99.89 0.23 100 0.05 GCF_024677965.1 JALDMX01 2238 2374 2374 70 14 51 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_024677985.1 HMT-531 20R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 20R 24 2382298 44.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/677/985/GCA_024677985.1_ASM2467798v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA787784 714 SAMN23845305 ASM2467798v1 Contig SPAdes v. 3.11 2021-12-10T08:35:04.707 Netherlands Dept of Medical Microbiology, University Medical Center Groningen Illumina MiSeq +Oxford Nanopore University of Groningen, University Medical Center Groningen 183.7x 97.81 99.66 0.3 100 0.11 GCF_024677985.1 JALDMW01 2286 2541 2541 180 19 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_024678005.1 HMT-531 7R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 7R 2 2355150 44.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/678/005/GCA_024678005.1_ASM2467800v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA787784 714 SAMN23845300 ASM2467800v1 Contig SPAdes v. 3.11 2021-12-10T08:35:04.640 Netherlands Dept of Medical Microbiology, University Medical Center Groningen Illumina MiSeq +Oxford Nanopore University of Groningen, University Medical Center Groningen 127.7x 97.81 99.89 0.23 100 0.12 GCF_024678005.1 JALDMU01 2252 2416 2416 90 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_024678025.1 HMT-531 8R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 8R 2 2157227 44.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/678/025/GCA_024678025.1_ASM2467802v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA787784 714 SAMN23845301 ASM2467802v1 Contig SPAdes v. 3.11 2021-12-10T08:35:04.653 Netherlands Dept of Medical Microbiology, University Medical Center Groningen Illumina MiSeq +Oxford Nanopore University of Groningen, University Medical Center Groningen 149.6x 99.87 99.89 0.15 100 0.01 GCF_024678025.1 JALDMV01 2078 2211 2211 58 19 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_024678085.1 HMT-531 3R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 3R 6 2344181 44.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/678/085/GCA_024678085.1_ASM2467808v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA787784 714 SAMN23845299 ASM2467808v1 Contig SPAdes v. 3.11 2021-12-10T08:35:04.627 Netherlands Dept of Medical Microbiology, University Medical Center Groningen Illumina MiSeq +Oxford Nanopore University of Groningen, University Medical Center Groningen 108.6x 97.8 99.89 0.23 100 0.12 GCF_024678085.1 JALDMT01 2228 2406 2406 103 19 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_024678105.1 HMT-531 2R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 2R 2 2107957 44.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/678/105/GCA_024678105.1_ASM2467810v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA787784 714 SAMN23845298 ASM2467810v1 Contig SPAdes v. 3.11 2021-12-10T08:35:04.610 Netherlands Dept of Medical Microbiology, University Medical Center Groningen Illumina MiSeq +Oxford Nanopore University of Groningen, University Medical Center Groningen 142.8x 99.85 99.89 0.08 100 0 GCF_024678105.1 JALDMS01 2016 2144 2144 57 17 53 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_024709665.1 HMT-209 RC343_metabat.bin.48 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus RC343_metabat.bin.48 213 3596826 yes 67.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/709/665/GCA_024709665.1_ASM2470966v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA848245 1934310 SAMN28993204 ASM2470966v1 Contig GS De Novo Assembler v. 1.2.9 2022-06-12T06:57:06.396 China: Beijing river sediments grown in denitrifying medium in anaerobic bioreactor system Illumina NextSeq Colledge of Environmental Sciences and Engineering, Peking University 27.6x 94.49 5.77 90.35 3.98 GCF_024709665.1 JANJWH01 3323 3408 3408 41 0 43 1 Acidovorax_ebreus_homd_HMT_209 GCA_024711385.1 HMT-209 RXF3_metabat.bin.1 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus RXF3_metabat.bin.1 34 3536044 yes 67.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/711/385/GCA_024711385.1_ASM2471138v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA848245 1934310 SAMN28990792 ASM2471138v1 Contig GS De Novo Assembler v. 1.2.9 2022-06-11T23:37:06.240 China: Beijing river sediments grown in denitrifying medium in anaerobic bioreactor system Illumina NextSeq Colledge of Environmental Sciences and Engineering, Peking University 1383.0x 99.98 1.55 100 0.93 GCF_024711385.1 JANJSX01 3271 3407 3407 87 3 45 1 Acidovorax_ebreus_homd_HMT_209 GCA_024717335.1 HMT-716 VHProbi M56 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-716 Lacticaseibacillus paracasei VHProbi M56 2 3082467 46.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/717/335/GCA_024717335.1_ASM2471733v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei PRJNA821984 1597 SAMN27162336 ASM2471733v1 Complete Genome SOAPdenovo v. Version 2.04 2022-03-31T23:49:03.133 China:Qingdao Illumina HiSeq; PacBio Nutrition &Health Technology Center 1107.2x 98.63 99.18 0 99.93 0.04 GCF_024717335.1 2955 3064 3064 33 15 60 1 Lacticaseibacillus_paracasei_homd_HMT_716 GCA_024722415.1 HMT-120 4M Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus 4M 4 2608257 32.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/722/415/GCA_024722415.1_ASM2472241v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA865942 1283 SAMN30148943 ASM2472241v1 Complete Genome Flye v. 2.9 2022-08-04T09:43:04.180 Russia: Moscow region milk Illumina MiSeq; Oxford Nanopore MinION Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 50.0x 97.42 99.51 0.08 100 0.16 2516 2682 2682 81 19 65 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_024730685.1 HMT-531 27R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 27R 1 2075531 44.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/730/685/GCA_024730685.1_ASM2473068v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA787784 714 SAMN23845307 ASM2473068v1 Complete Genome SPAdes v. 3.11 2021-12-10T08:35:04.730 Netherlands Dept of Medical Microbiology, University Medical Center Groningen Illumina MiSeq +Oxford Nanopore University of Groningen, University Medical Center Groningen 132.6x 99.92 99.66 0 100 0 GCF_024730685.1 1955 2086 2086 56 19 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_024730705.1 HMT-531 16R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 16R 1 2077859 44.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/730/705/GCA_024730705.1_ASM2473070v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA787784 714 SAMN23845304 ASM2473070v1 Complete Genome SPAdes v. 3.11 2021-12-10T08:35:04.693 Netherlands Dept of Medical Microbiology, University Medical Center Groningen Illumina MiSeq +Oxford Nanopore University of Groningen, University Medical Center Groningen 121.9x 99.92 99.89 0 100 0 GCF_024730705.1 1964 2095 2095 56 19 55 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_024730725.1 HMT-531 14R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 14R 1 2361401 44.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/730/725/GCA_024730725.1_ASM2473072v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA787784 714 SAMN23845303 ASM2473072v1 Complete Genome SPAdes v. 3.11 2021-12-10T08:35:04.680 Netherlands Dept of Medical Microbiology, University Medical Center Groningen Illumina MiSeq +Oxford Nanopore University of Groningen, University Medical Center Groningen 115.9x 97.82 99.89 0.23 100 0.14 GCF_024730725.1 2256 2503 2503 173 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_024730745.1 HMT-531 9R Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans 9R 1 2116158 44.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/730/745/GCA_024730745.1_ASM2473074v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA787784 714 SAMN23845302 ASM2473074v1 Complete Genome SPAdes v. 3.11 2021-12-10T08:35:04.663 Netherlands Dept of Medical Microbiology, University Medical Center Groningen Illumina MiSeq +Oxford Nanopore University of Groningen, University Medical Center Groningen 130.6x 99.85 99.89 0 100 0 GCF_024730745.1 2022 2157 2157 58 19 57 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_024758205.1 HMT-978 BFG-626 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-978 Phocaeicola vulgatus BFG-626 1 4919717 42.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/205/GCA_024758205.1_ASM2475820v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus PRJNA646575 821 SAMN30323499 ASM2475820v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:08.200 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 539.0x 99.31 99.12 0.31 100 0.03 GCF_024758205.1 4254 4371 4371 17 21 78 1 Phocaeicola_vulgatus_homd_HMT_978 GCA_024758245.1 HMT-973 BFG-244 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-973 Parabacteroides distasonis BFG-244 1 4963882 45.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/245/GCA_024758245.1_ASM2475824v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis PRJNA646575 823 SAMN30323240 ASM2475824v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:05.593 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 299.0x 99.06 99.42 0.51 99.85 1.06 GCF_024758245.1 4137 4290 4290 52 21 79 1 Parabacteroides_distasonis_homd_HMT_973 GCA_024758285.1 HMT-968 BFG-464 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-968 Bacteroides ovatus BFG-464 1 6835259 42.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/285/GCA_024758285.1_ASM2475828v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus PRJNA646575 28116 SAMN30323368 ASM2475828v1 Chromosome Flye v. 2.7 2022-08-15T15:49:06.823 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 71.0x 96.99 97.03 0.35 93.54 1.14 6428 6542 6542 27 15 71 1 Bacteroides_ovatus_homd_HMT_968 GCA_024758345.1 HMT-972 BFG-514 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-972 Bacteroides xylanisolvens BFG-514 1 6481087 41.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/345/GCA_024758345.1_ASM2475834v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens PRJNA646575 371601 SAMN30323417 ASM2475834v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:07.396 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 184.0x 97.85 98.67 0.32 99.95 0.8 GCF_024758345.1 5332 5441 5441 21 15 72 1 Bacteroides_xylanisolvens_homd_HMT_972 GCA_024758405.1 HMT-970 BFG-129 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-970 Bacteroides thetaiotaomicron BFG-129 1 6282330 42.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/405/GCA_024758405.1_ASM2475840v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron PRJNA646575 818 SAMN30323175 ASM2475840v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:05.000 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 42.0x 98.13 99.38 0.08 99.98 0.43 GCF_024758405.1 4953 5065 5065 26 15 70 1 Bacteroides_thetaiotaomicron_homd_HMT_970 GCA_024758425.1 HMT-967 BFG-101 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-967 Bacteroides caccae BFG-101 1 5022643 42.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/425/GCA_024758425.1_ASM2475842v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae PRJNA646575 47678 SAMN30323159 ASM2475842v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:04.850 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 173.0x 99.44 99.03 0.7 99.19 1.55 GCF_024758425.1 4333 4446 4446 18 15 79 1 Bacteroides_caccae_homd_HMT_967 GCA_024758685.1 HMT-827 EV76-CN Named Cultivated Pathogen (Abundance: Scarce) HMT-827 Yersinia pestis EV76-CN 4 4792816 47.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/685/GCA_024758685.1_ASM2475868v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;s__Yersinia pestis PRJNA830668 665028 SAMN27736294 ASM2475868v1 Complete Genome A5-miseeq v. v20150522 2022-04-22T04:55:03.963 China Illumina Third Military Medical University 432.0x 99.98 99.82 0.17 100 0.25 GCF_024758685.1 4307 4667 4667 270 19 70 1 Yersinia_pestis_homd_HMT_827 GCA_024758865.1 HMT-970 BFG-169 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-970 Bacteroides thetaiotaomicron BFG-169 1 6057350 42.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/865/GCA_024758865.1_ASM2475886v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron PRJNA646575 818 SAMN30323206 ASM2475886v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:05.300 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 77.0x 98.17 99.46 0.08 99.96 0.68 GCF_024758865.1 4638 4745 4745 23 15 68 1 Bacteroides_thetaiotaomicron_homd_HMT_970 GCA_024758905.1 HMT-970 BFG-109 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-970 Bacteroides thetaiotaomicron BFG-109 1 5957022 43.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/905/GCA_024758905.1_ASM2475890v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron PRJNA646575 818 SAMN30323161 ASM2475890v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:04.873 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 133.0x 98.45 99.41 0.08 99.96 0.12 GCF_024758905.1 4602 4709 4709 20 15 71 1 Bacteroides_thetaiotaomicron_homd_HMT_970 GCA_024758985.1 HMT-968 BFG-465 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-968 Bacteroides ovatus BFG-465 1 6838003 42.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/758/985/GCA_024758985.1_ASM2475898v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus PRJNA646575 28116 SAMN30323369 ASM2475898v1 Chromosome Flye v. 2.7 2022-08-15T15:49:06.833 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 63.0x 97 97.66 0.67 93.66 3.23 6534 6648 6648 27 15 71 1 Bacteroides_ovatus_homd_HMT_968 GCA_024759085.1 HMT-967 BFG-104 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-967 Bacteroides caccae BFG-104 1 5023218 42.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/759/085/GCA_024759085.1_ASM2475908v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae PRJNA646575 47678 SAMN30323160 ASM2475908v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:04.863 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 187.0x 99.43 98.5 0.7 99.75 1.86 4499 4612 4612 18 15 79 1 Bacteroides_caccae_homd_HMT_967 GCA_024759125.1 HMT-972 BFG-319 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-972 Bacteroides xylanisolvens BFG-319 1 6778845 42.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/759/125/GCA_024759125.1_ASM2475912v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens PRJNA646575 371601 SAMN30323283 ASM2475912v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:06.030 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 239.0x 98.22 99.46 0 100 2.23 GCF_024759125.1 5591 5715 5715 32 15 76 1 Bacteroides_xylanisolvens_homd_HMT_972 GCA_024759265.1 HMT-970 BFG-498 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-970 Bacteroides thetaiotaomicron BFG-498 2 6107487 42.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/759/265/GCA_024759265.1_ASM2475926v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron PRJNA646575 818 SAMN30323400 ASM2475926v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:07.123 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 99.0x 99.08 98.36 0.4 98.63 2.35 4995 5103 5103 20 16 71 1 Bacteroides_thetaiotaomicron_homd_HMT_970 GCA_024759505.1 HMT-967 BFG-474 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-967 Bacteroides caccae BFG-474 3 5340561 42.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/759/505/GCA_024759505.1_ASM2475950v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae PRJNA646575 47678 SAMN30323379 ASM2475950v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:06.923 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 256.0x 99.31 98.71 0.08 99.91 0.43 GCF_024759505.1 4495 4605 4605 22 16 71 1 Bacteroides_caccae_homd_HMT_967 GCA_024759565.1 HMT-978 BFG-201 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-978 Phocaeicola vulgatus BFG-201 2 5381150 42.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/759/565/GCA_024759565.1_ASM2475956v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus PRJNA646575 821 SAMN30323224 ASM2475956v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:05.456 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 258.0x 99.17 99.25 0 100 0.57 GCF_024759565.1 4599 4745 4745 35 22 88 1 Phocaeicola_vulgatus_homd_HMT_978 GCA_024759865.1 HMT-972 BFG-566 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-972 Bacteroides xylanisolvens BFG-566 4 6717551 42.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/759/865/GCA_024759865.1_ASM2475986v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens PRJNA646575 371601 SAMN30323448 ASM2475986v1 Complete Genome Flye v. 2.7 2022-08-15T15:49:07.723 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 125.0x 97.35 94.27 0.89 94.85 3.63 6914 7029 7029 29 15 70 1 Bacteroides_xylanisolvens_homd_HMT_972 GCA_024762155.1 HMT-686 UA-159 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans UA-159 1 2033272 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/762/155/GCA_024762155.1_ASM2476215v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA862258 1309 SAMN29960960 ASM2476215v1 Complete Genome unicycler v. v0.9.2 2022-07-25T22:09:03.977 China: Chengdu dental plaque Oxford Nanopore; Illumina NovaSeq Sichuan University 100.0x 99.34 100 0 100 0.06 GCF_024762155.1 1899 2012 2012 32 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_024762175.1 HMT-686 COCC33-14R Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans COCC33-14R 1 2115009 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/762/175/GCA_024762175.1_ASM2476217v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA862258 1309 SAMN29960959 ASM2476217v1 Complete Genome unicycler v. v0.9.2 2022-07-25T22:09:03.967 China: Chengdu dental plaque Oxford Nanopore; Illumina NovaSeq Sichuan University 100.0x 99.12 100 0.4 100 0.06 GCF_024762175.1 1915 2041 2041 46 15 64 1 Streptococcus_mutans_homd_HMT_686 GCA_024762195.1 HMT-686 COCC33-14 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans COCC33-14 1 2114814 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/762/195/GCA_024762195.1_ASM2476219v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA862258 1309 SAMN29960958 ASM2476219v1 Complete Genome unicycler v. v0.9.2 2022-07-25T22:09:03.953 China: Chengdu dental plaque Oxford Nanopore; Illumina NovaSeq Sichuan University 100.0x 99.12 100 0.4 100 0.06 GCF_024762195.1 1915 2041 2041 46 15 64 1 Streptococcus_mutans_homd_HMT_686 GCA_024787025.1 HMT-970 BFG-146 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-970 Bacteroides thetaiotaomicron BFG-146 2 6111721 42.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/787/025/GCA_024787025.1_ASM2478702v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron PRJNA646575 818 SAMN30323191 ASM2478702v1 Contig Flye v. 2.7 2022-08-15T15:49:05.170 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 90.0x 98.82 99.08 0 99.98 0.71 GCF_024787025.1 JANUSI01 4955 5068 5068 26 15 71 1 Bacteroides_thetaiotaomicron_homd_HMT_970 GCA_024787725.1 HMT-967 BFG-254 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-967 Bacteroides caccae BFG-254 3 5195543 42.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/787/725/GCA_024787725.1_ASM2478772v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae PRJNA646575 47678 SAMN30323242 ASM2478772v1 Contig Flye v. 2.7 2022-08-15T15:49:05.663 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 310.0x 99.4 99.07 0.97 99.28 1.92 JANUIE01 4653 4754 4754 18 15 67 1 Bacteroides_caccae_homd_HMT_967 GCA_024788785.1 HMT-971 BFG-213 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-971 Bacteroides uniformis BFG-213 2 4735906 46.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/788/785/GCA_024788785.1_ASM2478878v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis PRJNA646575 820 SAMN30323230 ASM2478878v1 Contig Flye v. 2.7 2022-08-15T15:49:05.506 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 212.0x 98.26 97.58 0.37 99.83 3.69 JANUSX01 4531 4625 4625 19 12 63 0 Bacteroides_uniformis_homd_HMT_971 GCA_024789025.1 HMT-970 BFG-350 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-970 Bacteroides thetaiotaomicron BFG-350 2 6712364 43.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/789/025/GCA_024789025.1_ASM2478902v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron PRJNA646575 818 SAMN30323299 ASM2478902v1 Contig Flye v. 2.7 2022-08-15T15:49:06.170 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 107.0x 99.16 98.07 0.19 99.92 0.76 GCF_024789025.1 JANUTA01 5572 5683 5683 24 15 71 1 Bacteroides_thetaiotaomicron_homd_HMT_970 GCA_024790365.1 HMT-978 BFG-194 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-978 Phocaeicola vulgatus BFG-194 3 5325727 42.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/790/365/GCA_024790365.1_ASM2479036v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus PRJNA646575 821 SAMN30323222 ASM2479036v1 Contig Flye v. 2.7 2022-08-15T15:49:05.440 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 133.0x 99.46 97.93 0.56 96.17 0.31 JANUTO01 5202 5327 5327 21 21 82 1 Phocaeicola_vulgatus_homd_HMT_978 GCA_024791515.1 HMT-974 BFG-550 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-974 Parabacteroides merdae BFG-550 3 4369357 45.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/791/515/GCA_024791515.1_ASM2479151v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae PRJNA646575 46503 SAMN30323439 ASM2479151v1 Contig Flye v. 2.7 2022-08-15T15:49:07.633 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 309.0x 99.7 91.83 0.21 98.77 2.93 JANUMK01 5110 5224 5224 15 19 79 1 Parabacteroides_merdae_homd_HMT_974 GCA_024792005.1 HMT-978 BFG-429 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-978 Phocaeicola vulgatus BFG-429 3 5062946 42.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/792/005/GCA_024792005.1_ASM2479200v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus PRJNA646575 821 SAMN30323343 ASM2479200v1 Contig Flye v. 2.7 2022-08-15T15:49:06.553 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 64.0x 99.25 92.59 0 95.56 3.7 JANUUA01 5710 5837 5837 22 23 81 1 Phocaeicola_vulgatus_homd_HMT_978 GCA_024792395.1 HMT-969 BFG-382 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-969 Bacteroides stercoris BFG-382 3 4148508 45.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/792/395/GCA_024792395.1_ASM2479239v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris PRJNA646575 46506 SAMN30323315 ASM2479239v1 Contig Flye v. 2.7 2022-08-15T15:49:06.310 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 187.0x 99.12 99.26 0.87 99.93 0.49 GCF_024792395.1 JANUNG01 3563 3669 3669 16 15 75 0 Bacteroides_stercoris_homd_HMT_969 GCA_024792655.1 HMT-978 BFG-289 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-978 Phocaeicola vulgatus BFG-289 2 5142176 42.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/792/655/GCA_024792655.1_ASM2479265v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus PRJNA646575 821 SAMN30323263 ASM2479265v1 Contig Flye v. 2.7 2022-08-15T15:49:05.853 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 485.0x 99.16 98.87 0.26 100 1.3 GCF_024792655.1 JANUUE01 4412 4549 4549 25 23 88 1 Phocaeicola_vulgatus_homd_HMT_978 GCA_024793125.1 HMT-969 BFG-407 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-969 Bacteroides stercoris BFG-407 6 4162344 46.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/793/125/GCA_024793125.1_ASM2479312v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris PRJNA646575 46506 SAMN30323331 ASM2479312v1 Contig Flye v. 2.7 2022-08-15T15:49:06.453 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 368.0x 98.13 95.27 0.93 96.35 0.79 JANUOJ01 4631 4730 4730 20 15 64 0 Bacteroides_stercoris_homd_HMT_969 GCA_024793755.1 HMT-972 BFG-193 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-972 Bacteroides xylanisolvens BFG-193 2 6245945 41.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/793/755/GCA_024793755.1_ASM2479375v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens PRJNA646575 371601 SAMN30323221 ASM2479375v1 Contig Flye v. 2.7 2022-08-15T15:49:05.430 USA: Bethesda Oxford Nanopore GridION National Institute of Allergy and Infectious Disease 93.0x 98.72 98.35 0.06 99.98 0.26 JANUUQ01 5366 5471 5471 19 15 70 1 Bacteroides_xylanisolvens_homd_HMT_972 GCA_024799785.1 HMT-544 CGMCC 1.17299 Named Cultivated Pathogen (Abundance: Scarce) HMT-544 Brucella anthropi CGMCC 1.17299 5 5233853 55.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/799/785/GCA_024799785.1_ASM2479978v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Brucella;s__Brucella anthropi PRJNA870724 529 SAMN30383443 ASM2479978v1 Complete Genome FALCON v. v0.3.0 2022-08-18T07:44:04.266 China: Fujian PacBio Nanjing Normal University 12.0x 97.66 100 0 100 1.43 GCF_024799785.1 5088 5245 5245 82 12 62 1 Brucella_anthropi_homd_HMT_544 GCA_024917115.1 HMT-468 168 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-468 Bacillus subtilis 168 1 4215167 43.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/917/115/GCA_024917115.1_ASM2491711v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis PRJNA846324 224308 SAMN30494013 ASM2491711v1 Complete Genome Canu v. 1.7 2022-08-25T06:23:03.976 China:Wuhan CCTCC PacBio Sequel Wuhan University 100.0x 99.99 99.76 0.25 100 0.05 GCF_024917115.1 4215 4433 4433 100 30 87 1 Bacillus_subtilis_homd_HMT_468 GCA_024968205.1 HMT-591 1269/21 Named Cultivated Pathogen (Abundance: Scarce) HMT-591 Corynebacterium diphtheriae 1269/21 1 2437577 53.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/968/205/GCA_024968205.1_ASM2496820v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae PRJNA873913 1720349 SAMN30508169 ASM2496820v1 Complete Genome CLC NGS Cell v. 22 2022-08-26T07:15:08.033 Poland blood Oxford Nanopore GridION National Institute of Public Health NIH - NRI 124.0x 98.29 97.77 0 99.46 0.47 2335 2414 2414 10 15 53 1 Corynebacterium_diphtheriae_homd_HMT_591 GCA_024968285.1 HMT-591 49390/20 Named Cultivated Pathogen (Abundance: Scarce) HMT-591 Corynebacterium diphtheriae 49390/20 1 2451330 53.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/968/285/GCA_024968285.1_ASM2496828v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae PRJNA873913 1720349 SAMN30508165 ASM2496828v1 Complete Genome Unicycler v. not specified 2022-08-26T07:15:07.996 Poland wound Oxford Nanopore GridION; MiSeq National Institute of Public Health NIH - NRI 167.0x 98.3 99.45 0 100 0.33 GCF_024968285.1 2256 2335 2335 10 15 53 1 Corynebacterium_diphtheriae_homd_HMT_591 GCA_024968525.1 HMT-591 824/20 Named Cultivated Pathogen (Abundance: Scarce) HMT-591 Corynebacterium diphtheriae 824/20 1 2442362 53.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/968/525/GCA_024968525.1_ASM2496852v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae PRJNA873913 1806053 SAMN30508163 ASM2496852v1 Complete Genome Unicycler v. not specified 2022-08-26T07:15:07.976 Poland blood Oxford Nanopore GridION; MiSeq National Institute of Public Health NIH - NRI 1022.0x 98.46 99.45 0 100 0.48 GCF_024968525.1 2308 2389 2389 11 15 54 1 Corynebacterium_diphtheriae_homd_HMT_591 GCA_024969465.1 HMT-591 5521/17 Named Cultivated Pathogen (Abundance: Scarce) HMT-591 Corynebacterium diphtheriae 5521/17 1 2452932 53.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/969/465/GCA_024969465.1_ASM2496946v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae PRJNA873913 1720349 SAMN30508153 ASM2496946v1 Complete Genome Unicycler v. not specified 2022-08-26T07:15:07.876 Poland wound Oxford Nanopore GridION; MiSeq National Institute of Public Health NIH - NRI 601.0x 98.3 99.45 0 100 0.33 GCF_024969465.1 2259 2338 2338 10 15 53 1 Corynebacterium_diphtheriae_homd_HMT_591 GCA_025137495.1 HMT-716 L1 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-716 Lacticaseibacillus paracasei L1 10 3434047 46.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/137/495/GCA_025137495.1_ASM2513749v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei PRJNA749149 1597 SAMN20355457 ASM2513749v1 Complete Genome Flye v. v2.5 2021-07-23T04:12:05.143 China:Jinzhou Sweet Potato Sour Liquid Illumina NovaSeq; PacBio Sequel Jinzhou Medical University 100.0x 98.48 99.46 0.54 100 0.56 GCF_025137495.1 3304 3417 3417 36 15 61 1 Lacticaseibacillus_paracasei_homd_HMT_716 GCA_025143445.1 HMT-127 p3-SID320 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis p3-SID320 24 2252934 31.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/143/445/GCA_025143445.1_ASM2514344v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA803478 1290 SAMN25653372 ASM2514344v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:10.853 USA: Wisconsin, Madison Axillary-groin swab Illumina NextSeq 550 University of Wisconsin - Madison 214.0x 99.24 99.57 1.08 99.99 1.13 GCF_025143445.1 JALXPI01 2194 2312 2312 54 4 59 1 Staphylococcus_hominis_homd_HMT_127 GCA_025143865.1 HMT-552 p3-SID1327 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum p3-SID1327 39 2436173 63.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/143/865/GCA_025143865.1_ASM2514386v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA803478 33010 SAMN25653522 ASM2514386v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:12.710 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 138.0x 98.72 98.03 0 99.98 0.1 GCF_025143865.1 JALXWJ01 2211 2282 2282 21 3 46 1 Cutibacterium_avidum_homd_HMT_552 GCA_025144085.1 HMT-835 p3-SID1220 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-835 Corynebacterium mucifaciens p3-SID1220 30 2067591 65.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/144/085/GCA_025144085.1_ASM2514408v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium mucifaciens PRJNA803478 57171 SAMN25653507 ASM2514408v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:12.503 USA: Wisconsin, Madison Antecubital fossa swab Illumina NextSeq 550 University of Wisconsin - Madison 194.0x 95.97 98.49 0.06 99.58 0.34 JAMBBU01 1983 2049 2049 8 3 54 1 Corynebacterium_mucifaciens_homd_HMT_835 GCA_025144305.1 HMT-019 p3-SID1129 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens p3-SID1129 36 2510621 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/144/305/GCA_025144305.1_ASM2514430v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA803478 38284 SAMN25653517 ASM2514430v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:12.640 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 133.0x 97.03 99.78 0 99.99 0.03 GCF_025144305.1 JALXXF01 2326 2388 2388 7 3 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_025144565.1 HMT-033 p3-SID973 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-033 Corynebacterium appendicis p3-SID973 54 2211941 64.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/144/565/GCA_025144565.1_ASM2514456v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium appendicis PRJNA803478 163202 SAMN25653665 ASM2514456v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.510 USA: Wisconsin, Madison Antecubital fossa swab Illumina NextSeq 550 University of Wisconsin - Madison 163.0x 97.97 99.34 0.22 100 0.08 GCF_025144565.1 JALXKQ01 2079 2147 2147 10 3 54 1 Corynebacterium_appendicis_homd_HMT_033 GCA_025144805.1 HMT-354 p3-SID955 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID955 57 2288037 62.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/144/805/GCA_025144805.1_ASM2514480v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653667 ASM2514480v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.533 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 139.0x 96.14 94.15 0.15 99.99 0.02 GCF_025144805.1 JALXKU01 2008 2069 2069 7 4 49 1 Dermabacter_hominis_homd_HMT_354 GCA_025144985.1 HMT-312 p3-SID91 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-312 Aerococcus viridans p3-SID91 46 1975416 39.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/144/985/GCA_025144985.1_ASM2514498v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;s__Aerococcus viridans_C PRJNA803478 1377 SAMN25653394 ASM2514498v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:11.120 USA: Wisconsin, Madison Axillary-groin swab Illumina NextSeq 550 University of Wisconsin - Madison 176.0x 94.51 98.35 0.84 99.91 0 GCF_025144985.1 JALXKY01 1808 1897 1897 34 3 51 1 Aerococcus_viridans_homd_HMT_312 GCA_025145255.1 HMT-031 p3-SID879 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum p3-SID879 6 2496688 58.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/255/GCA_025145255.1_ASM2514525v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA803478 43765 SAMN25653420 ASM2514525v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:11.440 USA: Wisconsin, Madison Umbilicus swab Illumina NextSeq 550 University of Wisconsin - Madison 159.0x 98.99 100 0 100 0 GCF_025145255.1 JALXLF01 2183 2256 2256 15 3 54 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_025145285.1 HMT-964 DSM 19147 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-964 Alistipes onderdonkii DSM 19147 1 3869542 57.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/285/GCA_025145285.1_ASM2514528v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii PRJNA746600 328813 SAMN20222635 ASM2514528v1 Complete Genome Unicycler v. 0.4.8 2021-07-14T17:26:19.196 not applicable Illumina HiSeq; Oxford Nanopore Stanford University 100.0x 99.99 99.28 0.48 99.99 0.51 GCF_025145285.1 3152 3223 3223 19 6 45 1 Alistipes_onderdonkii_homd_HMT_964 GCA_025145325.1 HMT-354 p3-SID877 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID877 64 2174712 63.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/325/GCA_025145325.1_ASM2514532v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653448 ASM2514532v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:11.797 USA: Wisconsin, Madison Umbilicus swab Illumina NextSeq 550 University of Wisconsin - Madison 202.0x 96.97 94.15 0 99.97 0.09 GCF_025145325.1 JALXLG01 1926 1989 1989 8 4 50 1 Dermabacter_hominis_homd_HMT_354 GCA_025145625.2 HMT-076 p3-SID855 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri p3-SID855 4 2555736 32.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/625/GCA_025145625.2_ASM2514562v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA803478 1292 SAMN25653409 ASM2514562v2 Contig Unicycler Hybrid Assembly v. 0.4.6 2022-02-04T14:00:11.310 USA: Wisconsin, Madison Occiput swab Illumina NextSeq 550; Oxford Nanopore University of Wisconsin - Madison 143.0x 99.57 99.7 0.06 100 0.08 GCF_025145625.2 JALXLO02 2431 2562 2562 50 19 61 1 Staphylococcus_warneri_homd_HMT_076 GCA_025145695.1 HMT-076 p3-SID856 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri p3-SID856 45 2555542 32.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/695/GCA_025145695.1_ASM2514569v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA803478 1292 SAMN25653411 ASM2514569v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:11.333 USA: Wisconsin, Madison Occiput swab Illumina NextSeq 550 University of Wisconsin - Madison 156.0x 99.57 99.7 0.06 100 0.59 GCF_025145695.1 JALXLN01 2455 2563 2563 52 4 51 1 Staphylococcus_warneri_homd_HMT_076 GCA_025145775.1 HMT-368 p3-SID826 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID826 126 3432491 70.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/775/GCA_025145775.1_ASM2514577v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653480 ASM2514577v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:12.180 USA: Wisconsin, Madison Occiput swab Illumina NextSeq 550 University of Wisconsin - Madison 90.0x 96.79 98.24 0 99.96 0.24 GCF_025145775.1 JALXLT01 3184 3267 3267 22 3 57 1 Dietzia_cinnamea_homd_HMT_368 GCA_025145845.1 HMT-966 WAL 8301 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-966 Alistipes shahii WAL 8301 1 3809618 57.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/845/GCA_025145845.1_ASM2514584v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii PRJNA746600 717959 SAMN20222638 ASM2514584v1 Complete Genome Unicycler v. 0.4.8 2021-07-14T17:26:19.250 not applicable Illumina HiSeq; Oxford Nanopore Stanford University 100.0x 99.99 100 0 99.99 0.95 GCF_025145845.1 3192 3276 3276 27 6 50 1 Alistipes_shahii_homd_HMT_966 GCA_025145915.1 HMT-368 p3-SID800 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID800 224 3615690 70.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/915/GCA_025145915.1_ASM2514591v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653421 ASM2514591v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:11.453 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 70.0x 97.49 98.82 0.2 99.99 0.15 GCF_025145915.1 JALXMA01 3339 3424 3424 25 3 56 1 Dietzia_cinnamea_homd_HMT_368 GCA_025146235.1 HMT-060 p3-SID764 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum p3-SID764 26 2300099 55.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/146/235/GCA_025146235.1_ASM2514623v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA803478 37637 SAMN25653432 ASM2514623v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:11.600 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 144.0x 98.02 99.67 0 99.99 0.04 GCF_025146235.1 JALXMR01 2085 2142 2142 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_025146315.1 HMT-967 ATCC 43185 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-967 Bacteroides caccae ATCC 43185 1 4570799 41.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/146/315/GCA_025146315.1_ASM2514631v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae PRJNA746600 47678 SAMN20222641 ASM2514631v1 Complete Genome Unicycler v. 0.4.8 2021-07-14T17:26:19.290 not applicable Illumina HiSeq; Oxford Nanopore Stanford University 100.0x 99.99 99.22 0.08 99.95 0.53 GCF_025146315.1 3668 3767 3767 13 15 70 1 Bacteroides_caccae_homd_HMT_967 GCA_025146355.1 HMT-060 p3-SID763 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum p3-SID763 29 2303143 55.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/146/355/GCA_025146355.1_ASM2514635v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA803478 37637 SAMN25653433 ASM2514635v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:11.613 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 98.02 99.67 0 99.99 0.03 GCF_025146355.1 JALXMS01 2087 2144 2144 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_025146415.1 HMT-975 DSM 17855 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-975 Phocaeicola dorei DSM 17855 1 5625379 42.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/146/415/GCA_025146415.1_ASM2514641v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei PRJNA746600 357276 SAMN20222645 ASM2514641v1 Complete Genome Unicycler v. 0.4.8 2021-07-14T17:26:19.350 not applicable Illumina HiSeq; Oxford Nanopore Stanford University 100.0x 99.99 99.25 0 100 0.18 GCF_025146415.1 4613 4760 4760 45 21 80 1 Phocaeicola_dorei_homd_HMT_975 GCA_025146485.1 HMT-354 p3-SID715 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID715 58 2389709 62.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/146/485/GCA_025146485.1_ASM2514648v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653459 ASM2514648v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:11.927 USA: Wisconsin, Madison Umbilicus swab Illumina NextSeq 550 University of Wisconsin - Madison 154.0x 95.69 94.15 0.15 99.97 0.11 GCF_025146485.1 JALXNK01 2173 2230 2230 6 4 46 1 Dermabacter_hominis_homd_HMT_354 GCA_025146775.1 HMT-968 ATCC 8483 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-968 Bacteroides ovatus ATCC 8483 1 6472384 41.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/146/775/GCA_025146775.1_ASM2514677v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus PRJNA746600 28116 SAMN20222651 ASM2514677v1 Complete Genome Unicycler v. 0.4.8 2021-07-14T17:26:19.440 not applicable Illumina HiSeq; Oxford Nanopore Stanford University 100.0x 99.99 99.46 0.12 99.97 0.52 GCF_025146775.1 4909 5015 5015 21 15 69 1 Bacteroides_ovatus_homd_HMT_968 GCA_025147045.1 HMT-059 p3-SID581 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum p3-SID581 50 2509082 56.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/147/045/GCA_025147045.1_ASM2514704v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA803478 43769 SAMN25653460 ASM2514704v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:11.940 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 121.0x 97.66 99.67 0 99.98 0.12 GCF_025147045.1 JALXON01 2280 2337 2337 7 3 46 1 Corynebacterium_propinquum_homd_HMT_059 GCA_025147145.1 HMT-354 p3-SID57 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID57 33 2192419 63.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/147/145/GCA_025147145.1_ASM2514714v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653302 ASM2514714v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:09.893 USA: Wisconsin, Madison Axillary-groin swab Illumina NextSeq 550 University of Wisconsin - Madison 197.0x 96.92 93.57 0 99.84 0.01 GCF_025147145.1 JALXOO01 1978 2036 2036 6 1 50 1 Dermabacter_hominis_homd_HMT_354 GCA_025147325.1 HMT-969 ATCC 43183 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-969 Bacteroides stercoris ATCC 43183 1 4007931 45.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/147/325/GCA_025147325.1_ASM2514732v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris PRJNA746600 449673 SAMN20222659 ASM2514732v1 Complete Genome Unicycler v. 0.4.8 2021-07-14T17:26:19.553 not applicable Illumina HiSeq; Oxford Nanopore Stanford University 100.0x 99.98 98.88 0.19 99.95 0.13 GCF_025147325.1 3402 3504 3504 22 15 64 1 Bacteroides_stercoris_homd_HMT_969 GCA_025147485.1 HMT-971 ATCC 8492 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-971 Bacteroides uniformis ATCC 8492 1 4629452 46.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/147/485/GCA_025147485.1_ASM2514748v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis PRJNA746600 820 SAMN20222662 ASM2514748v1 Complete Genome Unicycler v. 0.4.8 2021-07-14T17:26:19.600 not applicable Illumina HiSeq; Oxford Nanopore Stanford University 100.0x 99.99 98.88 0 99.98 0.46 GCF_025147485.1 3783 3876 3876 18 12 63 0 Bacteroides_uniformis_homd_HMT_971 GCA_025147785.1 HMT-368 p3-SID296 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID296 240 3774104 70.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/147/785/GCA_025147785.1_ASM2514778v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653503 ASM2514778v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:12.460 USA: Wisconsin, Madison Axillary-groin swab Illumina NextSeq 550 University of Wisconsin - Madison 91.0x 98.35 98.82 0.78 99.98 0.97 GCF_025147785.1 JALXPR01 3503 3585 3585 22 3 56 1 Dietzia_cinnamea_homd_HMT_368 GCA_025148845.1 HMT-368 p3-SID233 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID233 185 3625388 70.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/148/845/GCA_025148845.1_ASM2514884v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653329 ASM2514884v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:10.317 USA: Wisconsin, Madison Axillary-groin swab Illumina NextSeq 550 University of Wisconsin - Madison 83.0x 97.22 98.53 0.49 99.98 3.37 GCF_025148845.1 JALXRO01 3362 3445 3445 24 3 55 1 Dietzia_cinnamea_homd_HMT_368 GCA_025148875.1 HMT-368 p3-SID230 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID230 221 3675374 70.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/148/875/GCA_025148875.1_ASM2514887v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653328 ASM2514887v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:10.297 USA: Wisconsin, Madison Axillary-groin swab Illumina NextSeq 550 University of Wisconsin - Madison 88.0x 97.21 99.12 0.2 99.98 2.1 GCF_025148875.1 JALXRP01 3415 3492 3492 24 0 52 1 Dietzia_cinnamea_homd_HMT_368 GCA_025149065.1 HMT-354 p3-SID207 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID207 33 2223886 63.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/149/065/GCA_025149065.1_ASM2514906v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653320 ASM2514906v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:10.190 USA: Wisconsin, Madison Axillary-groin swab Illumina NextSeq 550 University of Wisconsin - Madison 163.0x 97.15 94.15 0.19 99.97 0.15 GCF_025149065.1 JALXRX01 1960 2021 2021 6 4 50 1 Dermabacter_hominis_homd_HMT_354 GCA_025149095.1 HMT-368 p3-SID1900 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1900 190 3438131 70.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/149/095/GCA_025149095.1_ASM2514909v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653554 ASM2514909v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.083 USA: Wisconsin, Madison Back swab Illumina NextSeq 550 University of Wisconsin - Madison 93.0x 97.91 99.41 0.2 99.96 0.23 GCF_025149095.1 JALXRZ01 3171 3250 3250 20 4 54 1 Dietzia_cinnamea_homd_HMT_368 GCA_025149385.1 HMT-368 p3-SID1825 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1825 224 3640788 70.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/149/385/GCA_025149385.1_ASM2514938v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653647 ASM2514938v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.277 USA: Wisconsin, Madison Occiput swab Illumina NextSeq 550 University of Wisconsin - Madison 90.0x 97.33 98.82 0.2 99.94 1.01 GCF_025149385.1 JALXSM01 3342 3426 3426 22 3 58 1 Dietzia_cinnamea_homd_HMT_368 GCA_025149405.1 HMT-354 p3-SID1823 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID1823 51 2256365 63.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/149/405/GCA_025149405.1_ASM2514940v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653651 ASM2514940v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.323 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 227.0x 97.27 94.15 0.19 99.9 0.18 GCF_025149405.1 JALXSN01 2013 2073 2073 6 4 49 1 Dermabacter_hominis_homd_HMT_354 GCA_025149525.1 HMT-116 p3-SID1731 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis p3-SID1731 12 2477307 32.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/149/525/GCA_025149525.1_ASM2514952v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA803478 29388 SAMN25653628 ASM2514952v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.040 USA: Wisconsin, Madison Umbilicus swab Illumina NextSeq 550 University of Wisconsin - Madison 128.0x 98.94 99.81 0.08 99.99 0.27 GCF_025149525.1 JALXTD01 2416 2528 2528 50 3 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_025149545.1 HMT-354 p3-SID1727 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID1727 63 2253497 63.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/149/545/GCA_025149545.1_ASM2514954v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653627 ASM2514954v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.027 USA: Wisconsin, Madison Umbilicus swab Illumina NextSeq 550 University of Wisconsin - Madison 208.0x 97.23 94.15 0.15 99.95 0.04 GCF_025149545.1 JALXTE01 2003 2064 2064 7 4 49 1 Dermabacter_hominis_homd_HMT_354 GCA_025149585.1 HMT-368 p3-SID1710 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1710 212 3565934 70.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/149/585/GCA_025149585.1_ASM2514958v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653624 ASM2514958v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.987 USA: Wisconsin, Madison Back swab Illumina NextSeq 550 University of Wisconsin - Madison 91.0x 97.26 98.24 0.49 99.99 3.07 GCF_025149585.1 JALXTI01 3320 3402 3402 25 0 56 1 Dietzia_cinnamea_homd_HMT_368 GCA_025150105.1 HMT-076 p3-SID858 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri p3-SID858 41 2555453 32.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/105/GCA_025150105.1_ASM2515010v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA803478 1292 SAMN25653410 ASM2515010v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:11.320 USA: Wisconsin, Madison Occiput swab Illumina NextSeq 550 University of Wisconsin - Madison 178.0x 99.57 99.7 0.06 100 0.59 GCF_025150105.1 JAMBAX01 2453 2571 2571 53 4 60 1 Staphylococcus_warneri_homd_HMT_076 GCA_025150455.1 HMT-368 p3-SID1786 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1786 183 3521846 70.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/455/GCA_025150455.1_ASM2515045v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653642 ASM2515045v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.217 USA: Wisconsin, Madison Volar forearm swab Illumina NextSeq 550 University of Wisconsin - Madison 131.0x 98 99.12 0.2 99.98 0.45 GCF_025150455.1 JALXSU01 3246 3329 3329 22 3 57 1 Dietzia_cinnamea_homd_HMT_368 GCA_025150485.1 HMT-368 p3-SID1796 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1796 277 3551991 70.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/485/GCA_025150485.1_ASM2515048v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653643 ASM2515048v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.230 USA: Wisconsin, Madison Antecubital fossa swab Illumina NextSeq 550 University of Wisconsin - Madison 115.0x 98.03 99.41 0.2 100 0.27 GCF_025150485.1 JALXSR01 3287 3366 3366 22 2 54 1 Dietzia_cinnamea_homd_HMT_368 GCA_025150495.1 HMT-368 p3-SID1789 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1789 256 3534568 70.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/495/GCA_025150495.1_ASM2515049v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653629 ASM2515049v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.053 USA: Wisconsin, Madison Antecubital fossa swab Illumina NextSeq 550 University of Wisconsin - Madison 84.0x 97.89 98.24 0.2 99.95 0.74 GCF_025150495.1 JALXSS01 3243 3323 3323 20 3 56 1 Dietzia_cinnamea_homd_HMT_368 GCA_025150565.1 HMT-534 ATCC 49175 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens ATCC 49175 1 1965422 37.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/565/GCA_025150565.1_ASM2515056v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJNA746600 638301 SAMN20222693 ASM2515056v1 Complete Genome Unicycler v. 0.4.8 2021-07-14T17:26:20.056 not applicable Illumina HiSeq; Oxford Nanopore Stanford University 100.0x 99.99 99.45 0.18 99.35 0.05 GCF_025150565.1 1870 1973 1973 29 15 58 1 Granulicatella_adiacens_homd_HMT_534 GCA_025150625.1 HMT-368 p3-SID1766 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1766 218 3645951 70.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/625/GCA_025150625.1_ASM2515062v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653635 ASM2515062v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.133 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 125.0x 97.21 99.12 0.49 99.99 3.5 GCF_025150625.1 JALXTB01 3377 3463 3463 25 3 57 1 Dietzia_cinnamea_homd_HMT_368 GCA_025150635.1 HMT-368 p3-SID1770 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1770 272 3566065 70.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/635/GCA_025150635.1_ASM2515063v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653636 ASM2515063v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.143 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 89.0x 97.89 99.22 0.2 99.98 0.62 GCF_025150635.1 JALXTA01 3270 3351 3351 22 3 55 1 Dietzia_cinnamea_homd_HMT_368 GCA_025150665.1 HMT-368 p3-SID1762 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1762 180 3578696 70.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/665/GCA_025150665.1_ASM2515066v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653634 ASM2515066v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.113 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 100.0x 97.2 96.76 0.49 99.35 3.62 GCF_025150665.1 JALXTC01 3314 3393 3393 24 0 54 1 Dietzia_cinnamea_homd_HMT_368 GCA_025150765.1 HMT-368 p3-SID1715 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1715 239 3592312 70.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/765/GCA_025150765.1_ASM2515076v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653625 ASM2515076v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.000 USA: Wisconsin, Madison Back swab Illumina NextSeq 550 University of Wisconsin - Madison 99.0x 97.24 97.06 0.78 99.96 3.76 GCF_025150765.1 JALXTH01 3339 3423 3423 25 3 56 0 Dietzia_cinnamea_homd_HMT_368 GCA_025150805.1 HMT-534 p3-SID1692 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens p3-SID1692 41 1854876 37.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/805/GCA_025150805.1_ASM2515080v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJNA803478 46124 SAMN25653612 ASM2515080v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.833 USA: Wisconsin, Madison Occiput swab Illumina NextSeq 550 University of Wisconsin - Madison 223.0x 96.29 99.45 0 99.83 0.04 GCF_025150805.1 JALXTO01 1791 1862 1862 30 4 36 1 Granulicatella_adiacens_homd_HMT_534 GCA_025150845.1 HMT-368 p3-SID1701 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1701 220 3626026 70.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/845/GCA_025150845.1_ASM2515084v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653657 ASM2515084v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:14.417 USA: Wisconsin, Madison Occiput swab Illumina NextSeq 550 University of Wisconsin - Madison 84.0x 97.22 99.12 0.49 99.95 3.39 GCF_025150845.1 JALXTN01 3415 3491 3491 24 0 51 1 Dietzia_cinnamea_homd_HMT_368 GCA_025150875.1 HMT-354 p3-SID1680 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID1680 53 2255823 63.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/875/GCA_025150875.1_ASM2515087v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653622 ASM2515087v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.960 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 165.0x 97.28 94.15 0.19 99.9 0.18 GCF_025150875.1 JALXTP01 2016 2076 2076 6 4 49 1 Dermabacter_hominis_homd_HMT_354 GCA_025150985.1 HMT-354 p3-SID1646 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID1646 39 2249324 63.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/150/985/GCA_025150985.1_ASM2515098v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653571 ASM2515098v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.317 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 147.0x 97.27 94.15 0.19 99.9 0.18 GCF_025150985.1 JALXTV01 2009 2069 2069 6 4 49 1 Dermabacter_hominis_homd_HMT_354 GCA_025151025.1 HMT-354 p3-SID1644 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID1644 34 2257019 63.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/025/GCA_025151025.1_ASM2515102v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653570 ASM2515102v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.307 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 144.0x 97.26 94.15 0.19 99.89 0.18 GCF_025151025.1 JALXTW01 2018 2078 2078 6 4 49 1 Dermabacter_hominis_homd_HMT_354 GCA_025151115.1 HMT-354 p3-SID1639 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis p3-SID1639 33 2247754 63.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/115/GCA_025151115.1_ASM2515111v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA803478 36740 SAMN25653567 ASM2515111v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.270 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 158.0x 97.28 94.15 0.19 99.91 0.19 GCF_025151115.1 JALXTZ01 2005 2065 2065 6 4 49 1 Dermabacter_hominis_homd_HMT_354 GCA_025151215.1 HMT-974 ATCC 43184 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-974 Parabacteroides merdae ATCC 43184 1 4377447 45.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/215/GCA_025151215.1_ASM2515121v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae PRJNA746600 411477 SAMN20222701 ASM2515121v1 Complete Genome Unicycler v. 0.4.8 2021-07-14T17:26:20.190 not applicable Illumina HiSeq; Oxford Nanopore Stanford University 100.0x 99.98 99.62 0 99.97 0.44 GCF_025151215.1 3619 3726 3726 14 16 77 0 Parabacteroides_merdae_homd_HMT_974 GCA_025151385.1 HMT-562 ATCC 35310 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-562 Hoylesella buccalis ATCC 35310 1 3307707 45.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/385/GCA_025151385.1_ASM2515138v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccalis PRJNA746600 679190 SAMN20222704 ASM2515138v1 Complete Genome Unicycler v. 0.4.8 2021-07-14T17:26:20.236 not applicable Illumina HiSeq; Oxford Nanopore Stanford University 100.0x 95.58 99.29 0.83 99.94 0.24 GCF_025151385.1 2833 2915 2915 19 9 53 1 Hoylesella_buccalis_homd_HMT_562 GCA_025151445.1 HMT-783 p3-SID1570 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii p3-SID1570 19 2417892 58.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/445/GCA_025151445.1_ASM2515144v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA803478 1979527 SAMN25653596 ASM2515144v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.607 USA: Wisconsin, Madison Occiput swab Illumina NextSeq 550 University of Wisconsin - Madison 167.0x 96.1 99.78 0.13 99.99 0.29 GCF_025151445.1 JALXUP01 2310 2374 2374 9 3 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_025151505.1 HMT-368 p3-SID1517 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1517 168 3626474 70.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/505/GCA_025151505.1_ASM2515150v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653576 ASM2515150v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.373 USA: Wisconsin, Madison Toe web space swab Illumina NextSeq 550 University of Wisconsin - Madison 76.0x 97.35 99.41 0.2 99.96 0.88 GCF_025151505.1 JALXUV01 3324 3410 3410 22 3 60 1 Dietzia_cinnamea_homd_HMT_368 GCA_025151705.1 HMT-786 p3-SID1389 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-786 Paenibacillus phoenicis p3-SID1389 143 4559896 52.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/705/GCA_025151705.1_ASM2515170v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Fontibacillus;s__Fontibacillus phoenicis PRJNA803478 2916364 SAMN25653550 ASM2515170v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.033 USA: Wisconsin, Madison Nares swab Illumina NextSeq 550 University of Wisconsin - Madison 78.0x 99.85 0 99.99 0.01 GCF_025151705.1 JALXVO01 4170 4297 4297 56 2 68 1 Paenibacillus_phoenicis_homd_HMT_786 GCA_025151765.1 HMT-368 p3-SID1379 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1379 93 3379007 71.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/765/GCA_025151765.1_ASM2515176v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653527 ASM2515176v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:12.767 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 77.0x 97.19 99.41 0.2 99.99 0.04 GCF_025151765.1 JALXVR01 3119 3201 3201 21 3 57 1 Dietzia_cinnamea_homd_HMT_368 GCA_025151785.1 HMT-368 p3-SID1378 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1378 276 3685270 70.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/785/GCA_025151785.1_ASM2515178v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653529 ASM2515178v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:12.790 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 81.0x 97.21 99.41 0.49 99.99 3.17 GCF_025151785.1 JALXVS01 3449 3533 3533 25 3 55 1 Dietzia_cinnamea_homd_HMT_368 GCA_025151825.1 HMT-368 p3-SID1371 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1371 113 3447591 70.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/825/GCA_025151825.1_ASM2515182v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653532 ASM2515182v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:12.823 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 85.0x 96.77 99.41 0.2 99.99 0.1 GCF_025151825.1 JALXVV01 3157 3242 3242 26 3 55 1 Dietzia_cinnamea_homd_HMT_368 GCA_025151925.1 HMT-368 p3-SID1377 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1377 199 3452034 70.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/925/GCA_025151925.1_ASM2515192v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653526 ASM2515192v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:12.757 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 101.0x 97.89 99.12 0.2 99.98 0.19 GCF_025151925.1 JALXVT01 3142 3221 3221 20 3 55 1 Dietzia_cinnamea_homd_HMT_368 GCA_025152065.1 HMT-368 p3-SID1362 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1362 200 3883925 70.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/152/065/GCA_025152065.1_ASM2515206v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653539 ASM2515206v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:12.903 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 68.0x 97.41 98.82 0.78 100 2.1 GCF_025152065.1 JALXVZ01 3630 3716 3716 25 3 57 1 Dietzia_cinnamea_homd_HMT_368 GCA_025152095.1 HMT-368 p3-SID1363 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-368 Dietzia cinnamea p3-SID1363 205 3642165 70.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/152/095/GCA_025152095.1_ASM2515209v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia;s__Dietzia cinnamea PRJNA803478 321318 SAMN25653549 ASM2515209v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:13.020 USA: Wisconsin, Madison Alar crease swab Illumina NextSeq 550 University of Wisconsin - Madison 89.0x 97.54 99.41 0.2 99.94 2.36 GCF_025152095.1 JALXVY01 3384 3467 3467 24 3 55 1 Dietzia_cinnamea_homd_HMT_368 GCA_025152445.1 HMT-128 p3-SID102 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis p3-SID102 26 2526590 33.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/152/445/GCA_025152445.1_ASM2515244v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA803478 28035 SAMN25653312 ASM2515244v1 Contig SPAdes v. 3.10.1 2022-02-04T14:00:10.087 USA: Wisconsin, Madison Axillary-groin swab Illumina NextSeq 550 University of Wisconsin - Madison 333.0x 99.41 99.61 0 100 0.06 GCF_025152445.1 JALXXQ01 2347 2494 2494 86 4 56 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_025166855.1 HMT-076 LK1468 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri LK1468 36 2441264 32.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/166/855/GCA_025166855.1_ASM2516685v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA830888 1292 SAMN27779680 ASM2516685v1 Contig SPAdes v. 3.10.1 2022-04-26T11:13:03.870 USA: Madison, WI skin Illumina NextSeq University of Wisconsin - Madison 179.0x 99.47 99.73 0.06 100 0.38 GCF_025166855.1 JAMCCS01 2336 2454 2454 52 4 61 1 Staphylococcus_warneri_homd_HMT_076 GCA_025170155.2 HMT-621 10720 Named Cultivated Pathogen (Abundance: Scarce) HMT-621 Neisseria gonorrhoeae 10720 2 2224044 52.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/170/155/GCA_025170155.2_ASM2517015v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria gonorrhoeae PRJNA768989 485 SAMN28835880 ASM2517015v2 Complete Genome Unicycler v. 0.4.8 2022-06-02T09:59:04.983 Russia urethal swab Illumina MiniSeq; Oxford Nanopore MinION Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 312.0x 99.55 GCF_025170155.1 2221 2310 2310 20 12 56 1 Neisseria_gonorrhoeae_homd_HMT_621 GCA_025170665.2 HMT-621 10612 Named Cultivated Pathogen (Abundance: Scarce) HMT-621 Neisseria gonorrhoeae 10612 2 2225204 52.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/170/665/GCA_025170665.2_ASM2517066v2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria gonorrhoeae PRJNA768989 485 SAMN28837864 ASM2517066v2 Complete Genome Unicycler v. 0.4.8 2022-06-02T10:17:04.660 Russia urethal swab Illumina MiniSeq; Oxford Nanopore MinION Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 323.0x 99.54 GCF_025170665.1 2222 2309 2309 20 12 54 1 Neisseria_gonorrhoeae_homd_HMT_621 GCA_025272695.1 HMT-116 K1-2-2-23 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis K1-2-2-23 2 2546812 32.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/272/695/GCA_025272695.1_ASM2527269v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA849394 72758 SAMN29055813 ASM2527269v1 Complete Genome Unicycler v. 0.4.9 2022-06-15T05:31:39.470 USA "ISS indoor enironment, V2A steel surface. Exposure experiment (""BIORISK"")" Illumina MiSeq; Oxford Nanopore MinION German Aerospace Center (DLR) 133.0x 98.89 99.81 0.36 99.99 0.46 GCF_025272695.1 2383 2516 2516 51 19 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_025272815.1 HMT-116 H17 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis H17 2 2491837 32.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/272/815/GCA_025272815.1_ASM2527281v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA849394 72758 SAMN29057146 ASM2527281v1 Complete Genome Unicycler v. 0.4.9 2022-06-15T05:43:17.736 Germany human skin, forehead (bedrest study) Illumina MiSeq; Oxford Nanopore MinION German Aerospace Center (DLR) 65.0x 98.9 99.81 0.36 99.98 0.14 GCF_025272815.1 2321 2450 2450 47 19 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_025272975.1 HMT-116 DSM 20326 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis DSM 20326 5 2486324 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/272/975/GCA_025272975.1_ASM2527297v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA849394 72758 SAMN29053769 ASM2527297v1 Complete Genome Unicycler v. 0.4.9 2022-06-15T05:14:05.316 unknown skin Illumina MiSeq; Oxford Nanopore MinION German Aerospace Center (DLR) 120.0x 99.98 99.81 0.06 99.99 0.4 GCF_025272975.1 2401 2539 2539 57 19 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_025309775.1 HMT-027 WM02 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-027 Cupriavidus gilardii WM02 2 5687891 67.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/309/775/GCA_025309775.1_ASM2530977v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus;s__Cupriavidus gilardii PRJNA879189 82541 SAMN30797600 ASM2530977v1 Complete Genome SOAPdenovo v. 2 2022-09-11T12:16:04.186 China: Tianjin nasopharyngeal swab and bronchoalveolar lavage fluid from a 68-year-old female p Illumina HiSeq Shandong Agricultural University 626.0x 98.49 99.89 0.23 100 0.13 GCF_025309775.1 5109 5216 5216 28 12 66 1 Cupriavidus_gilardii_homd_HMT_027 GCA_025311515.1 HMT-051 AM_LB9 Named Cultivated Vaginal (Abundance: Low) HMT-051 Limosilactobacillus vaginalis AM_LB9 2 1883554 40.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/311/515/GCA_025311515.1_ASM2531151v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus vaginalis PRJNA880306 1633 SAMN30837134 ASM2531151v1 Complete Genome trycycler v. v0.5.3 2022-09-13T15:09:03.623 USA: Georgia feces Oxford Nanopore; Illumina University of Georgia 300.0x 98.91 99.46 0.54 99.96 0.32 GCF_025311515.1 1781 1898 1898 40 15 61 1 Limosilactobacillus_vaginalis_homd_HMT_051 GCA_025311535.1 HMT-634 colR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-634 Enterobacter hormaechei colR 2 4987708 55.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/311/535/GCA_025311535.1_ASM2531153v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter hormaechei_C PRJNA877279 299766 SAMN30695413 ASM2531153v1 Complete Genome Unicycler v. v0.4.9 2022-09-06T18:22:04.980 Poland not collected Hybrid: Illumina NovaSeq and Oxford Nanopore MinION Medical University of Bialystok 727.0x 99.22 99.17 0.15 100 0.37 GCF_025311535.1 4685 4934 4934 133 25 90 1 Enterobacter_hormaechei_homd_HMT_634 GCA_025370135.1 HMT-116 DSM 31028 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis DSM 31028 10 2469425 32.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/370/135/GCA_025370135.1_ASM2537013v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA849394 72758 SAMN29056813 ASM2537013v1 Scaffold Unicycler v. 0.4.9 2022-06-15T05:40:42.723 Germany cleanroom, wipe sample Illumina MiSeq; Oxford Nanopore MinION German Aerospace Center (DLR) 39.0x 98.95 99.81 1.26 99.99 0.94 GCF_025370135.1 JANTNV01 2338 2467 2467 49 19 60 1 Staphylococcus_capitis_homd_HMT_116 GCA_025398675.1 HMT-756 H1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-756 Ligilactobacillus salivarius H1 3 2578608 32.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/398/675/GCA_025398675.1_ASM2539867v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius PRJNA874879 1624 SAMN30578425 ASM2539867v1 Complete Genome Hifiasm v. Circlator v1.5.5 2022-08-30T05:51:03.303 China:Jiangxi NanChang PacBio Jiangxi Agricultural University 105.0x 98.08 98.95 0 99.68 4.52 2539 2677 2677 37 22 78 1 Ligilactobacillus_salivarius_homd_HMT_756 GCA_025398895.1 HMT-614 HJ.T1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-614 Lysinibacillus fusiformis HJ.T1 2 4856088 37.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/398/895/GCA_025398895.1_ASM2539889v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus;s__Lysinibacillus fusiformis PRJNA880984 28031 SAMN30880999 ASM2539889v1 Complete Genome Unicycler v. 0.4.8-beta 2022-09-15T22:35:03.993 Hong Kong: Telegraph Bay polyester fabric recovered from compost Illumina NovaSeq; Oxford Nanopore MinION The Independent Schools Foundation Academy 322.0x 97.38 99.34 1.66 99.99 0.7 GCF_025398895.1 4737 4975 4975 92 37 108 1 Lysinibacillus_fusiformis_homd_HMT_614 GCA_025398935.1 HMT-883 68-1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-883 Lactiplantibacillus pentosus 68-1 6 3583752 46.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/398/935/GCA_025398935.1_ASM2539893v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus PRJNA880475 1589 SAMN30841943 ASM2539893v1 Complete Genome HGAP v. v4; CANU v. v1.7.1; pilon v. v1.18 2022-09-14T04:04:03.103 China: Xian Jiangshui Oxford Nanopore PromethION; Illumina NovaSeq Shaanxi Institute of Microbiology 292.0x 97.9 99.38 2.01 100 0.19 GCF_025398935.1 3181 3305 3305 43 16 64 1 Lactiplantibacillus_pentosus_homd_HMT_883 GCA_025399565.1 HMT-027 CY1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-027 Cupriavidus gilardii CY1 19 5544442 67.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/399/565/GCA_025399565.1_ASM2539956v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus;s__Cupriavidus gilardii PRJNA881018 82541 SAMN30881886 ASM2539956v1 Contig SPAdes v. 3.15.4 2022-09-16T03:18:04.320 China: Beijing bronchoalveolar lavage fluid Illumina NovaSeq State Key Laboratory of Pathogen and Biosecurity 99.2x 98.64 99.89 0.69 100 0.01 GCF_025399565.1 JAODVC01 4887 4977 4977 22 7 60 1 Cupriavidus_gilardii_homd_HMT_027 GCA_025399595.1 HMT-027 CY2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-027 Cupriavidus gilardii CY2 20 5437722 67.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/399/595/GCA_025399595.1_ASM2539959v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus;s__Cupriavidus gilardii PRJNA881018 82541 SAMN30881887 ASM2539959v1 Contig SPAdes v. 3.15.4 2022-09-16T03:18:04.333 China: Beijing peritoneal effusion Illumina NovaSeq State Key Laboratory of Pathogen and Biosecurity 102.0x 98.83 99.89 0.69 100 0 GCF_025399595.1 JAODVD01 4751 4840 4840 20 7 61 1 Cupriavidus_gilardii_homd_HMT_027 GCA_025447255.1 HMT-558 SRCM210362 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-558 Levilactobacillus brevis SRCM210362 5 2628394 45.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/447/255/GCA_025447255.1_ASM2544725v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis PRJNA882348 1580 SAMN30932819 ASM2544725v1 Complete Genome HGAP v. 4 2022-09-20T08:25:03.683 South Korea:Namyangju kimchi PacBio Sequel; Illumina HiSeq Microbial Institute for Fermentation Industry 278.0x 98.9 99.06 0 100 0.16 GCF_025447255.1 JAOEJK01 2529 2638 2638 30 15 63 1 Levilactobacillus_brevis_homd_HMT_558 GCA_025449295.1 HMT-531 IDHaas10a Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans IDHaas10a 1 2133765 44.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/449/295/GCA_025449295.1_ASM2544929v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJNA882935 714 SAMN30955797 ASM2544929v1 Complete Genome Unicycler v. 2021-06 2022-09-21T20:25:05.470 Finland Oxford Nanopore; Illumina University of Vermont 140.0x 99.14 99.89 0 100 0.02 GCF_025449295.1 2035 2168 2168 59 19 54 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_025558345.1 HMT-233 IVB6180 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-233 Staphylococcus schleiferi IVB6180 1 2520333 36.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/558/345/GCA_025558345.1_ASM2555834v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus schleiferi PRJNA819273 1295 SAMN26923375 ASM2555834v1 Complete Genome Flye v. 2.6 2022-03-24T09:41:06.037 Kenya:Marsabit Ear swab PacBio Sequel University of Bern 484.0x 99.86 99.43 0.28 100 0 GCF_025558345.1 2329 2516 2516 111 16 59 1 Staphylococcus_schleiferi_homd_HMT_233 GCA_025558365.1 HMT-233 IVB6176 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-233 Staphylococcus schleiferi IVB6176 1 2560239 36.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/558/365/GCA_025558365.1_ASM2555836v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus schleiferi PRJNA819273 1295 SAMN26923374 ASM2555836v1 Complete Genome Flye v. 2.6 2022-03-24T09:41:06.020 Kenya:Marsabit nasal swab PacBio Sequel University of Bern 352.0x 99.9 99.43 0.28 100 0 GCF_025558365.1 2381 2559 2559 109 16 52 1 Staphylococcus_schleiferi_homd_HMT_233 GCA_025558385.1 HMT-141 IVB6198 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-141 Staphylococcus pasteuri IVB6198 2 2475360 31.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/558/385/GCA_025558385.1_ASM2555838v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pasteuri PRJNA819273 45972 SAMN26923373 ASM2555838v1 Complete Genome Flye v. 2.6 2022-03-24T09:41:06.003 Somalia:Somaliland milk PacBio Sequel University of Bern 346.0x 99.02 99.17 0.08 99.99 0.02 GCF_025558385.1 2362 2501 2501 57 19 62 1 Staphylococcus_pasteuri_homd_HMT_141 GCA_025558605.1 HMT-127 IVB6247 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis IVB6247 1 2225204 31.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/558/605/GCA_025558605.1_ASM2555860v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA819273 1290 SAMN26923365 ASM2555860v1 Complete Genome Flye v. 2.6 2022-03-24T09:41:05.880 Kenya swab PacBio Sequel University of Bern 339.0x 98.82 99.38 0.72 100 0.03 GCF_025558605.1 2116 2198 0 0 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_025558645.1 HMT-601 IVB6256 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis IVB6256 2 2469183 32.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/558/645/GCA_025558645.1_ASM2555864v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA819273 1282 SAMN26923363 ASM2555864v1 Complete Genome Flye v. 2.6 2022-03-24T09:41:05.850 Kenya:Samburu Ear swab PacBio Sequel University of Bern 673.0x 99.36 99.67 0 99.98 0.04 GCF_025558645.1 2239 2410 2410 91 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_025558665.1 HMT-601 IVB6213 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis IVB6213 1 2484775 32.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/558/665/GCA_025558665.1_ASM2555866v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA819273 1282 SAMN26923362 ASM2555866v1 Complete Genome Flye v. 2.6 2022-03-24T09:41:05.833 Somalia:Somaliland milk PacBio Sequel University of Bern 963.0x 99.66 99.81 0 99.98 0.04 GCF_025558665.1 2250 2413 2413 83 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_025558685.1 HMT-601 IVB6210 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis IVB6210 2 2504304 32.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/558/685/GCA_025558685.1_ASM2555868v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA819273 1282 SAMN26923361 ASM2555868v1 Complete Genome Flye v. 2.6 2022-03-24T09:41:05.817 missing milk PacBio Sequel University of Bern 958.0x 97.14 99.67 0 99.99 0.08 GCF_025558685.1 2284 2434 2434 70 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_025558705.1 HMT-601 IVB6208 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis IVB6208 2 2544812 32.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/558/705/GCA_025558705.1_ASM2555870v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA819273 1282 SAMN26923360 ASM2555870v1 Complete Genome Flye v. 2.6 2022-03-24T09:41:05.803 Somalia:Somaliland milk PacBio Sequel University of Bern 964.0x 97.21 99.67 0.02 99.99 0.17 GCF_025558705.1 2333 2500 2500 86 19 61 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_025558725.1 HMT-601 IVB6194 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis IVB6194 1 2552216 32.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/558/725/GCA_025558725.1_ASM2555872v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA819273 1282 SAMN26923359 ASM2555872v1 Complete Genome Flye v. 2.6 2022-03-24T09:41:05.787 Somalia:Somaliland milk PacBio Sequel University of Bern 905.0x 99.53 99.81 0.19 99.99 0.08 GCF_025558725.1 2367 2531 2531 84 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_025559885.1 HMT-485 Yol002 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-485 Agrobacterium tumefaciens Yol002 4 5512153 59.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/559/885/GCA_025559885.1_ASM2555988v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium;s__Agrobacterium tumefaciens PRJNA561159 358 SAMN12610103 ASM2555988v1 Complete Genome Unicycler v. 0.4.6 2019-08-20T13:50:04.897 USA: California oxford Nanopore GridION;Illumina Miseq USDA-ARS 168.1x 87.65 100 0 99.99 0.48 GCF_025559885.1 5152 5282 5282 60 12 57 1 Agrobacterium_tumefaciens_homd_HMT_485 GCA_025560305.1 HMT-485 Sta002 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-485 Agrobacterium tumefaciens Sta002 4 5831233 59.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/560/305/GCA_025560305.1_ASM2556030v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium;s__Agrobacterium tumefaciens PRJNA561159 358 SAMN12610089 ASM2556030v1 Complete Genome Unicycler v. 0.4.6 2019-08-20T13:50:04.647 USA: California oxford Nanopore GridION;Illumina Miseq USDA-ARS 180.6x 87.6 100 0.28 99.99 0.95 GCF_025560305.1 5472 5605 5605 60 12 60 1 Agrobacterium_tumefaciens_homd_HMT_485 GCA_025567495.1 HMT-962 Sanger_31 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-962 Hominimerdicola aceti Sanger_31 34 2965035 42.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/567/495/GCA_025567495.1_ASM2556749v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola;s__Hominimerdicola aceti PRJNA883234 2981726 SAMN30962691 ASM2556749v1 Scaffold Velvet v. v1.2 2022-09-22T11:14:06.400 United Kingdom feces Illumina HiSeq UniKlinik RWTH Aachen 50.0x 98.63 0 100 2.67 GCF_025567495.1 JAOQJZ01 2797 2876 2876 24 4 50 1 Hominimerdicola_aceti_homd_HMT_962 GCA_025617355.1 HMT-663 CGMCC 1.1788 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-663 Stenotrophomonas maltophilia CGMCC 1.1788 70 4956694 66.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/617/355/GCA_025617355.1_ASM2561735v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas maltophilia PRJNA876580 40324 SAMN30661376 ASM2561735v1 Scaffold SOAPdenovo v. March-2015 2022-09-03T16:44:04.786 China missing Illumina MiSeq Institute of Microbiology, Chinese Academy of Sciences 184.0x 99.9 100 0.34 100 0.03 GCF_025617355.1 JAOAOH01 4531 4651 4651 39 4 76 1 Stenotrophomonas_maltophilia_homd_HMT_663 GCA_025642215.1 HMT-534 KHUD_009 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens KHUD_009 1 1949834 37.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/642/215/GCA_025642215.1_ASM2564221v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJNA883546 46124 SAMN30968860 ASM2564221v1 Complete Genome IPA HiFi genome assembler v. 11 2022-09-23T03:27:07.330 South Korea: Seoul PacBio Sequel Kyung Hee University 22.5x 96.42 99.45 0.27 99.37 0.02 GCF_025642215.1 1853 1958 1958 30 15 59 1 Granulicatella_adiacens_homd_HMT_534 GCA_025665255.1 HMT-529 NC56 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-529 Lactobacillus acidophilus NC56 1 2031081 34.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/665/255/GCA_025665255.1_ASM2566525v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus PRJNA884752 1579 SAMN31046618 ASM2566525v1 Complete Genome Canu v. 1.5 2022-09-27T20:59:04.423 China:Shandong GUT Oxford Nanopore; DNBSEQ Shandong First Medical University 2014.0x 99.93 98.94 0 99.99 0.34 GCF_025665255.1 1903 2022 2022 43 15 60 1 Lactobacillus_acidophilus_homd_HMT_529 GCA_025665415.1 HMT-601 AH6072 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis AH6072 4 2507467 32.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/665/415/GCA_025665415.1_ASM2566541v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA883761 1282 SAMN30996408 ASM2566541v1 Complete Genome Unicycler v. 0.4.8 2022-09-23T21:26:04.647 USA: Colorado skin Oxford Nanopore MinION; Illumina NextSeq University of Colorado 312.0x 99.57 99.67 0 99.99 0.16 GCF_025665415.1 2333 2493 2493 80 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_025677785.1 HMT-051 GSH01 Named Cultivated Vaginal (Abundance: Low) HMT-051 Limosilactobacillus vaginalis GSH01 1 1779643 40.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/677/785/GCA_025677785.1_ASM2567778v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus vaginalis PRJNA872822 1633 SAMN30470964 ASM2567778v1 Complete Genome Unicycle v. December-2021; SMRT Link v. v5.1.0 2022-08-23T22:43:04.497 China Illumina; Nanopore Southern Medical University 1511.0x 99.05 99.46 0.54 99.94 0.24 GCF_025677785.1 1661 1779 1779 41 15 61 1 Limosilactobacillus_vaginalis_homd_HMT_051 GCA_025698165.1 HMT-830 M17 Named Cultivated Vaginal (Abundance: Scarce) HMT-830 Mobiluncus mulieris M17 52 2430094 55.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/698/165/GCA_025698165.1_ASM2569816v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus mulieris PRJNA561908 2052 SAMN12630755 ASM2569816v1 Scaffold SPAdes v. 3.9.0 2019-08-24T07:44:05.573 China: Hangzhou, Zhejiang vaginal fluids Illumina HiSeq China Agricultural University 100.0x 99.32 99.53 1.42 99.96 1.3 GCF_025698165.1 VTAB01 2126 2182 2182 6 3 45 2 Mobiluncus_mulieris_homd_HMT_830 GCA_025905525.1 HMT-584 KCOM 3500 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola KCOM 3500 1 2778422 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/905/525/GCA_025905525.1_ASM2590552v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJNA887932 158 SAMN31203232 ASM2590552v1 Complete Genome Microbial Assembly Application from SMRTlink v. 10.1.0.119588 2022-10-07T03:54:04.023 South Korea: Gwangju subgingival plaque of chronic periodontitis lesion PacBio Sequel Chosun University 259.4x 97.29 100 0 99.72 0.48 GCF_025905525.1 2529 2590 2590 10 6 44 1 Treponema_denticola_homd_HMT_584 GCA_025908475.1 HMT-544 MAB-22 Named Cultivated Pathogen (Abundance: Scarce) HMT-544 Brucella anthropi MAB-22 4 4827192 56.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/908/475/GCA_025908475.1_ASM2590847v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Brucella;s__Brucella anthropi PRJNA890377 2986424 SAMN31276604 ASM2590847v1 Complete Genome SOAPdenovo v. Oct-2022; SPAdes v. Oct-2022; ABySS v. Oct-2022 2022-10-13T23:10:04.186 China: Qufu cyanobacterial bloom PacBio Qufu Normal University 50.0x 100 0 99.99 0.31 GCF_025908475.1 4589 4715 4715 54 12 59 1 Brucella_anthropi_homd_HMT_544 GCA_025908845.1 HMT-543 UMB8342 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus UMB8342 33 1960857 38.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/908/845/GCA_025908845.1_ASM2590884v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA316969 1328 SAMN31407734 ASM2590884v1 Contig SPAdes v. v3.14.1 2022-10-21T16:15:08.576 USA: San Diego, CA urine Illumina NovaSeq Loyola University Chicago 32.1x 95.27 100 0.16 100 0.4 GCF_025908845.1 JAPAIB01 1911 1984 1984 35 0 37 1 Streptococcus_anginosus_homd_HMT_543 GCA_025908915.1 HMT-543 UMB6654 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus UMB6654 28 1815868 38.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/908/915/GCA_025908915.1_ASM2590891v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA316969 1328 SAMN31407724 ASM2590891v1 Contig SPAdes v. v3.14.1 2022-10-21T16:15:08.480 USA: Maywood, IL urine Illumina NovaSeq Loyola University Chicago 150.4x 95.65 100 0 99.99 0.04 GCF_025908915.1 JAPAIL01 1773 1853 1853 40 0 39 1 Streptococcus_anginosus_homd_HMT_543 GCA_025909175.1 HMT-543 UMB8047 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus UMB8047 17 1833499 38.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/909/175/GCA_025909175.1_ASM2590917v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA316969 1328 SAMN31407733 ASM2590917v1 Contig SPAdes v. v3.14.1 2022-10-21T16:15:08.566 USA: Maywood, IL urine Illumina NovaSeq Loyola University Chicago 333.3x 95.56 100 0 99.99 0.11 GCF_025909175.1 JAPAIC01 1789 1855 1855 33 0 32 1 Streptococcus_anginosus_homd_HMT_543 GCA_025909295.1 HMT-543 UMB6516 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus UMB6516 78 2084610 38.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/909/295/GCA_025909295.1_ASM2590929v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA316969 1328 SAMN31407723 ASM2590929v1 Contig SPAdes v. v3.14.1 2022-10-21T16:15:08.470 USA: Maywood, IL urine Illumina NovaSeq Loyola University Chicago 109.8x 95.29 99.88 0.98 100 0.28 GCF_025909295.1 JAPAIM01 2066 2156 2156 43 3 43 1 Streptococcus_anginosus_homd_HMT_543 GCA_025909465.1 HMT-543 UMB8810 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus UMB8810 270 2145621 39.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/909/465/GCA_025909465.1_ASM2590946v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA316969 1328 SAMN31407737 ASM2590946v1 Contig SPAdes v. v3.14.1 2022-10-21T16:15:08.606 USA: San Diego, CA urine Illumina NovaSeq Loyola University Chicago 48.5x 95.38 99.88 2.2 100 0.97 GCF_025909465.1 JAPAHY01 2124 2212 2212 40 3 44 1 Streptococcus_anginosus_homd_HMT_543 GCA_025948295.1 HMT-152 CNRZ385 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-152 Streptococcus thermophilus CNRZ385 1 1897009 39.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/948/295/GCA_025948295.1_ASM2594829v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus PRJNA681853 1308 SAMN16933252 ASM2594829v1 Complete Genome Unicycler v. JAN-2020 2020-11-27T05:37:05.603 Ireland Dairy PacBio RSII; Illumina MiSeq University College Cork 304.0x 98.76 99.89 0.29 99.97 0.3 GCF_025948295.1 1995 2165 2165 84 18 67 1 Streptococcus_thermophilus_homd_HMT_152 GCA_026000695.2 HMT-229 NIES-39 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-229 Arthrospira platensis NIES-39 1 6818856 44.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/000/695/GCA_026000695.2_ASM2600069v2 d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira;s__Limnospira platensis PRJDB14339 696747 SAMD00536037 ASM2600069v2 Complete Genome Flye v. 2.9 2022-10-25T15:05:42.867 Chad:Lake Chad PacBio Sequel IIe, Illumina HiSeq/Nova, and Sanger sequencing Laboratory of Gene Biodynamics, Graduate School of Biostudies, Kyoto University 36.0x 99.63 100 0.22 100 0.1 6385 6846 6846 408 4 48 1 Arthrospira_platensis_homd_HMT_229 GCA_026013785.1 HMT-700 KCOM 2191 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea KCOM 2191 1 2672569 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/013/785/GCA_026013785.1_ASM2601378v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA894344 1018 SAMN31453015 ASM2601378v1 Complete Genome RS HGAP v. 3.0; SPAdes v. 3.8.2 2022-10-26T04:18:03.910 South Korea: Gwangju Subgingival dental plaque, gingivitis PacBio RSII; Illumina HiSeq Korean Collection for Oral Microbiology 1039.0x 96.52 100 0 99.99 0.03 GCF_026013785.1 2243 2311 2311 8 12 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_026013805.1 HMT-700 KCOM 26681 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea KCOM 26681 1 2779391 39.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/013/805/GCA_026013805.1_ASM2601380v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA894794 1018 SAMN31469266 ASM2601380v1 Complete Genome RS HGAP v. 3.0 2022-10-27T01:29:03.103 South Korea: Gwangju Subgingival dental plaque, periimplantitis PacBio RSII Korean Collection for Oral Microbiology 516.0x 96.27 100 0 99.98 0.02 GCF_026013805.1 2338 2408 2408 10 12 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_026013825.1 HMT-700 KCOM 28121 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea KCOM 28121 1 2807434 39.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/013/825/GCA_026013825.1_ASM2601382v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJNA894799 1018 SAMN31474502 ASM2601382v1 Complete Genome RS HGAP v. 3.0; SPAdes v. 3.8.2 2022-10-27T02:21:01.660 South Korea: Gwangju Actinomycosis PacBio RSII; Illumina HiSeq Korean Collection for Oral Microbiology 883.0x 96.38 100 0 99.98 0.06 GCF_026013825.1 2379 2448 2448 9 12 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_026013845.1 HMT-151 KCOM 20461 Named Cultivated Oral (Abundance: Medium) HMT-151 Selenomonas sputigena KCOM 20461 1 2740586 57.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/013/845/GCA_026013845.1_ASM2601384v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas;s__Selenomonas sputigena PRJNA894823 69823 SAMN31475584 ASM2601384v1 Complete Genome RS HGAP v. 3.0 2022-10-27T03:37:03.690 South Korea: Gwangju Subgingival dental plaque, gingivitis PacBio RSII Korean Collection for Oral Microbiology 370.0x 95.81 100 0.63 100 0.18 GCF_026013845.1 2455 2564 2564 43 12 53 1 Selenomonas_sputigena_homd_HMT_151 GCA_026057535.1 HMT-024 LMG 21645 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-024 Schlegelella thermodepolymerans LMG 21645 1 3940444 70.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/057/535/GCA_026057535.1_ASM2605753v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Caldimonas;s__Caldimonas thermodepolymerans PRJNA674774 215580 SAMN31484382 ASM2605753v1 Complete Genome Flye v. 2.8.1; Racon v. 1.4.13; Medaka v. 1.2.0; Pilon v. 1.23 2022-10-27T10:36:04.340 Czech Republic cultured in Erlenmeyer flask Illumina MiSeq; Oxford Nanopore MinION Brno University of Technology 150.0x 99.67 99.84 0 100 0.02 GCF_026057535.1 3644 3723 3723 16 6 56 1 Schlegelella_thermodepolymerans_homd_HMT_024 GCA_026057715.1 HMT-024 DSM 15264 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-024 Schlegelella thermodepolymerans DSM 15264 1 4030985 70.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/057/715/GCA_026057715.1_ASM2605771v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Caldimonas;s__Caldimonas thermodepolymerans PRJNA674774 215580 SAMN31484381 ASM2605771v1 Complete Genome Flye v. 2.8.1; Racon v. 1.4.13; Medaka v. 1.2.0; Pilon v. 1.23 2022-10-27T10:36:04.327 Czech Republic cultured in Erlenmeyer flask Illumina MiSeq; Oxford Nanopore MinION Brno University of Technology 1400.0x 99.79 99.84 0 100 0.02 GCF_026057715.1 3783 3863 3863 17 6 56 1 Schlegelella_thermodepolymerans_homd_HMT_024 GCA_026057735.1 HMT-158 KCOM 3468 Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae KCOM 3468 2 2205714 38.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/057/735/GCA_026057735.1_ASM2605773v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJNA893812 423477 SAMN31432570 ASM2605773v1 Complete Genome Microbial Assembly Application v. JULY-2021 2022-10-24T22:16:03.513 South Korea: Gwangju subgingival plaque of chronic periodontitis lesion PacBio Sequel Korean Collection for Oral Microbiology 436.7x 95.97 100 0 99.99 0.03 GCF_026057735.1 1999 2090 2090 30 12 48 1 Veillonella_rogosae_homd_HMT_158 GCA_026089295.1 HMT-447 DSM 19848 Named Cultivated Oral (Abundance: No Data) HMT-447 Fusobacterium simiae DSM 19848 86 2481730 27.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/089/295/GCA_026089295.1_ASM2608929v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium simiae PRJNA884868 855 SAMN31056805 ASM2608929v1 Contig SPAdes v. 3.15.4 2022-09-28T04:27:05.520 missing dental plaque Illumina institut hospitalo-universitaire IHU 76.2x 100 0 99.92 0.17 GCF_026089295.1 JAOXXL01 2263 2329 2329 17 4 44 1 Fusobacterium_simiae_homd_HMT_447 GCA_026094485.1 HMT-709 BE7N Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-709 Limosilactobacillus oris BE7N 62 2129000 50.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/094/485/GCA_026094485.1_ASM2609448v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus oris PRJNA896692 1632 SAMN31562624 ASM2609448v1 Contig metaWRAP v. v1.2 2022-11-01T23:35:04.023 China:hainan Illumina NovaSeq6000 platform QuantHealth 427.0x 97.74 99.45 0 99.98 0.76 GCF_026094485.1 JAPEJB01 2062 2136 2136 24 4 45 1 Limosilactobacillus_oris_homd_HMT_709 GCA_026153315.1 HMT-601 CCSM0287 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis CCSM0287 4 2531086 32.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/153/315/GCA_026153315.1_ASM2615331v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA893857 1282 SAMN31433203 ASM2615331v1 Complete Genome SOAPdenovo v. 2.0 2022-10-25T02:35:03.307 China:shanghai Illumina; PacBio Shanghai Institute of Technology 1564.5x 99.6 99.81 0 99.98 0.02 GCF_026153315.1 2315 2477 2477 82 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_026155825.1 HMT-718 PT11747 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae PT11747 28 2005504 39.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/155/825/GCA_026155825.1_ASM2615582v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_A PRJNA824278 729 SAMN27398404 ASM2615582v1 Contig INNUca v. 4.2.2 2022-04-07T05:25:06.550 Portugal nasopharynx Illumina NextSeq 500 Instituto de Tecnologia Quimica e Biologica Antonio Xavier 157.0x 93.9 99.89 0.57 100 0.91 GCF_026155825.1 JAMLEI01 1875 1976 1976 50 4 46 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_026222675.1 HMT-883 OHF 23 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-883 Lactiplantibacillus pentosus OHF 23 1 3622037 46.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/222/675/GCA_026222675.1_ASM2622267v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus PRJNA633746 1589 SAMN14969420 ASM2622267v1 Complete Genome De novo assembly v. QUAST version 2.30 2020-05-19T05:41:05.046 South Korea missing Illumina HiSeq Kangwon National University 3622040.0x 100 99.38 2.16 100 0.75 GCF_026222675.1 3254 3386 3386 42 16 73 1 Lactiplantibacillus_pentosus_homd_HMT_883 GCA_026222695.1 HMT-245 AD3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-245 Roseomonas mucosa AD3 6 5007091 70.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/222/695/GCA_026222695.1_ASM2622269v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas mucosa PRJNA498095 207340 SAMN10281987 ASM2622269v1 Complete Genome CANU v. 1.0; Bowtie2 v. 2.2.4; pilon v. 1.16; MIRA v. 4.0.2 2018-10-23T15:52:05.826 USA Illumina MiSeq; PacBio Igenbio, Inc 100.0x 99.82 100 0 100 0.8 GCF_026222695.1 4550 4655 4655 19 15 70 1 Roseomonas_mucosa_homd_HMT_245 GCA_026222715.1 HMT-245 HV1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-245 Roseomonas mucosa HV1 6 4878034 70.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/222/715/GCA_026222715.1_ASM2622271v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas mucosa PRJNA498096 207340 SAMN10281988 ASM2622271v1 Complete Genome CANU v. 1.0; Bowtie2 v. 2.2.4; pilon v. 1.16; MIRA v. 4.0 2018-10-23T15:58:03.673 USA Clinical, healthy, human skin Illumina MiSeq; PacBio Igenbio, Inc 100.0x 99.16 100 0.17 100 0.3 GCF_026222715.1 4395 4498 4498 19 15 68 1 Roseomonas_mucosa_homd_HMT_245 GCA_026427435.1 HMT-128 RMLUG1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis RMLUG1 4 2650399 33.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/427/435/GCA_026427435.1_ASM2642743v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA763873 28035 SAMN21459164 ASM2642743v1 Complete Genome Unicycler v. v0.4.9 2021-09-16T11:30:17.847 China:Fujian BALF Illumina; Oxford Nanopore MinION Peking University Peoples Hospital 510.8x 99.45 99.61 0 100 0.16 GCF_026427435.1 2468 2641 2641 92 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_026427455.1 HMT-128 RMLUG2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis RMLUG2 3 2676510 33.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/427/455/GCA_026427455.1_ASM2642745v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA763873 28035 SAMN21459165 ASM2642745v1 Complete Genome Unicycler v. v0.4.9 2021-09-16T11:30:17.863 China:Fujian blood Illumina NovaSeq; Oxford Nanopore MinION Peking University Peoples Hospital 455.4x 99.53 99.56 0 100 0.05 GCF_026427455.1 2487 2667 2667 99 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_026427475.1 HMT-128 RMLUG3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis RMLUG3 3 2593363 33.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/427/475/GCA_026427475.1_ASM2642747v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA763873 28035 SAMN21459166 ASM2642747v1 Complete Genome Unicycler v. v0.4.9 2021-09-16T11:30:17.877 China:Fujian wound secretion Illumina NovaSeq; Oxford Nanopore MinION Peking University Peoples Hospital 541.1x 99.44 99.61 0 100 0.07 GCF_026427475.1 2405 2571 2571 88 16 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_026427495.1 HMT-128 RMLUG4 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis RMLUG4 3 2710045 33.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/427/495/GCA_026427495.1_ASM2642749v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA763873 28035 SAMN21459167 ASM2642749v1 Complete Genome Unicycler v. v0.4.9 2021-09-16T11:30:17.890 China:Fujian abdominal drainage Illumina NovaSeq; Oxford Nanopore MinION Peking University Peoples Hospital 554.1x 99.54 99.61 0 100 0.08 GCF_026427495.1 2523 2691 2691 88 19 60 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_026427515.1 HMT-128 RMLUG5 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis RMLUG5 1 2622429 33.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/427/515/GCA_026427515.1_ASM2642751v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA763873 28035 SAMN21459168 ASM2642751v1 Complete Genome Unicycler v. v0.4.9 2021-09-16T11:30:17.903 China:Beijing sputum Illumina NovaSeq; Oxford Nanopore MinION Peking University Peoples Hospital 504.9x 99.54 99.59 0 100 0.08 GCF_026427515.1 2440 2603 2603 86 16 60 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_026427535.1 HMT-128 RMLUG6 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis RMLUG6 3 2634289 33.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/427/535/GCA_026427535.1_ASM2642753v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA763873 28035 SAMN21459169 ASM2642753v1 Complete Genome Unicycler v. v0.4.9 2021-09-16T11:30:17.917 China:Wuhan postoperative incision Illumina NovaSeq; Oxford Nanopore MinION Peking University Peoples Hospital 673.8x 99.44 99.61 0 100 0.16 GCF_026427535.1 2455 2625 2625 89 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_026430575.1 HMT-116 CCSM0123 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis CCSM0123 5 2549044 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/430/575/GCA_026430575.1_ASM2643057v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA894108 29388 SAMN31437481 ASM2643057v1 Complete Genome SOAPdenovo v. 2.0 2022-10-25T08:47:03.533 China:shanghai Illumina; PacBio Shanghai Institute of Technology 427.7x 99.83 99.7 0.34 99.99 0.87 GCF_026430575.1 2471 2611 2611 59 19 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_026461725.1 HMT-552 FMS4815 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum FMS4815 42 2461377 63.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/461/725/GCA_026461725.1_ASM2646172v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA783331 33010 SAMN23427969 ASM2646172v1 Contig unicycler-pilon hybrid v. 0.4.8 (unicycler)/Pilon v. 1.23 Mon Nov 26 16:04:05 2018 -0500 2021-11-24T15:19:04.520 France:Boulogne-Billancourt left shoulder osteosynthesis plate Illumina Mayo Clinic 121.8x 98.67 98.68 0 100 0.1 GCF_026461725.1 JAJNCR01 2231 2303 2303 21 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_026461745.1 HMT-552 FMS2275 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum FMS2275 36 2460213 63.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/461/745/GCA_026461745.1_ASM2646174v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA783331 33010 SAMN23427968 ASM2646174v1 Contig unicycler-pilon hybrid v. 0.4.8 (unicycler)/Pilon v. 1.23 Mon Nov 26 16:04:05 2018 -0500 2021-11-24T15:19:04.500 France:Boulogne-Billancourt left shoulder osteosynthesis plate Illumina Mayo Clinic 135.9x 98.66 98.68 0 100 0.1 GCF_026461745.1 JAJNCS01 2230 2302 2302 21 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_026636275.1 HMT-141 PPE011 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-141 Staphylococcus pasteuri PPE011 3 2617971 31.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/636/275/GCA_026636275.1_ASM2663627v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pasteuri PRJNA784427 45972 SAMN23489387 ASM2663627v1 Chromosome SPAdes v. 3.15.3 2021-11-29T09:06:03.310 India: Arunachal Pradesh Endophytic bacteria from Medicinal Plant Illumina; Oxford Nanopore CSIR-North East Institute of Science and Technology 200.0x 99.04 99.17 0.1 100 0.24 GCF_026636275.1 2487 2634 2634 65 19 62 1 Staphylococcus_pasteuri_homd_HMT_141 GCA_026651425.1 HMT-834 BC12 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-834 Pseudomonas otitidis BC12 1 6113211 67.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/651/425/GCA_026651425.1_ASM2665142v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas;s__Metapseudomonas otitidis PRJNA473419 319939 SAMN30101387 ASM2665142v1 Complete Genome Unicycler v. 0.4.8 2022-08-02T10:13:04.216 Ghana river water Illumina MiniSeq; Oxford Nanopore MinION Tokyo Medical and Dental University 100.0x 98.07 99.68 0.87 99.99 0.01 GCF_026651425.1 5456 5617 5617 75 12 73 1 Pseudomonas_otitidis_homd_HMT_834 GCA_026659915.1 HMT-142 NSP001H Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-142 Staphylococcus pettenkoferi NSP001H 25 2515007 38.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/659/915/GCA_026659915.1_ASM2665991v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pettenkoferi PRJNA870410 170573 SAMN30360646 ASM2665991v1 Contig CLC v. 22.0.2 2022-08-17T07:33:04.097 France Illumina MiSeq INSERM U1047 173.0x 96.32 98.9 1.8 99.99 0.03 GCF_026659915.1 JANSKQ01 2357 2469 2469 49 5 57 1 Staphylococcus_pettenkoferi_homd_HMT_142 GCA_026659935.1 HMT-142 NSP002H Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-142 Staphylococcus pettenkoferi NSP002H 21 2418100 38.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/659/935/GCA_026659935.1_ASM2665993v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pettenkoferi PRJNA870410 170573 SAMN30360647 ASM2665993v1 Contig CLC v. 22.0.2 2022-08-17T07:33:04.107 France Illumina MiSeq INSERM U1047 130.0x 96.3 98.9 1.8 99.99 0.01 GCF_026659935.1 JANSKP01 2261 2368 2368 44 5 57 1 Staphylococcus_pettenkoferi_homd_HMT_142 GCA_026660155.1 HMT-142 NSP021P Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-142 Staphylococcus pettenkoferi NSP021P 24 2476101 38.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/660/155/GCA_026660155.1_ASM2666015v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pettenkoferi PRJNA870410 170573 SAMN30360640 ASM2666015v1 Contig CLC v. 22.0.2 2022-08-17T07:33:04.047 France Illumina MiSeq INSERM U1047 112.0x 96.22 98.9 1.8 99.99 0.01 GCF_026660155.1 JANSKW01 2336 2445 2445 47 5 56 1 Staphylococcus_pettenkoferi_homd_HMT_142 GCA_026660275.1 HMT-142 NSP019P Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-142 Staphylococcus pettenkoferi NSP019P 26 2457863 38.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/660/275/GCA_026660275.1_ASM2666027v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pettenkoferi PRJNA870410 170573 SAMN30360638 ASM2666027v1 Contig CLC v. 22.0.2 2022-08-17T07:33:04.030 France Illumina MiSeq INSERM U1047 137.0x 99.89 98.9 2.35 100 0.02 GCF_026660275.1 JANSKY01 2319 2428 2428 46 4 58 1 Staphylococcus_pettenkoferi_homd_HMT_142 GCA_026684175.1 HMT-824 NW6 Named Cultivated Pathogen (Abundance: Scarce) HMT-824 Bacillus anthracis NW6 3 5525241 35.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/684/175/GCA_026684175.1_ASM2668417v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis PRJNA905919 1396 SAMN31888295 ASM2668417v1 Complete Genome Flye v. 2.9.1 2022-11-28T04:19:03.900 China:Daqing petroleum sludge Oxford Nanopore PromethION Shaanxi Normal University 670.0x 91.96 99.23 0.46 100 0.73 GCF_026684175.1 5543 5824 5824 132 42 106 1 Bacillus_anthracis_homd_HMT_824 GCA_026781275.1 HMT-021 D13009425 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis D13009425 183 1919327 39.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/275/GCA_026781275.1_ASM2678127v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA808899 1343 SAMN26135100 ASM2678127v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.940 Denmark:Odense blood Illumina MiSeq Region Zealand 65.6x 98.32 99.34 1.84 99.75 1.32 GCF_026781275.1 JAKUUY01 1855 1920 1920 37 3 24 1 Streptococcus_vestibularis_homd_HMT_021 GCA_026781295.1 HMT-758 K16280241 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis K16280241 13 2415537 43.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/295/GCA_026781295.1_ASM2678129v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_G PRJNA808899 1305 SAMN26135098 ASM2678129v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.913 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 114.2x 94.25 100 0 99.94 0.11 GCF_026781295.1 JAKUVA01 2319 2395 2395 32 3 40 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781315.1 HMT-758 B15805315 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis B15805315 10 2338498 43.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/315/GCA_026781315.1_ASM2678131v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_P PRJNA808899 1305 SAMN26135097 ASM2678131v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.900 Denmark:Roskilde blood Illumina MiSeq Region Zealand 115.6x 95.36 100 0 99.99 0.13 GCF_026781315.1 JAKUVB01 2258 2334 2334 28 3 44 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781445.1 HMT-758 A15001031 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis A15001031 13 2307542 43.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/445/GCA_026781445.1_ASM2678144v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA808899 1305 SAMN26135094 ASM2678144v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.860 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 154.6x 96.61 100 0 99.93 0.05 GCF_026781445.1 JAKUVE01 2219 2300 2300 30 3 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781465.1 HMT-758 A17000466 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis A17000466 10 2357343 42.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/465/GCA_026781465.1_ASM2678146v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA808899 1305 SAMN26135095 ASM2678146v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:06.873 Denmark:Hilleroed blood Illumina MiSeq Region Zealand 202.7x 95.9 100 0 99.99 0.22 GCF_026781465.1 JAKUVD01 2226 2316 2316 38 3 48 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781525.1 HMT-758 A14001025 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis A14001025 12 2348921 43.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/525/GCA_026781525.1_ASM2678152v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJNA808899 1305 SAMN26135092 ASM2678152v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.833 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 83.1x 95.36 100 0 100 0.08 GCF_026781525.1 JAKUVG01 2225 2298 2298 29 3 40 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781545.1 HMT-758 A15000964 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis A15000964 8 2328986 43.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/545/GCA_026781545.1_ASM2678154v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_W PRJNA808899 1305 SAMN26135093 ASM2678154v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.847 Denmark:Hilleroed blood Illumina MiSeq Region Zealand 115.5x 95.35 100 0.19 99.99 0.13 GCF_026781545.1 JAKUVF01 2211 2291 2291 29 3 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781585.1 HMT-758 A13000585 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis A13000585 24 2363397 43.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/585/GCA_026781585.1_ASM2678158v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_A PRJNA808899 1305 SAMN26135091 ASM2678158v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.820 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 102.6x 94.1 100 0.12 99.99 0.04 GCF_026781585.1 JAKUVH01 2252 2350 2350 46 3 48 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781625.1 HMT-758 A12055600 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis A12055600 16 2324343 43.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/625/GCA_026781625.1_ASM2678162v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_H PRJNA808899 1305 SAMN26135089 ASM2678162v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:06.793 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 111.4x 95.06 100 0.12 99.96 0.06 GCF_026781625.1 JAKUVJ01 2236 2307 2307 27 3 40 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781665.1 HMT-758 A12068223 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis A12068223 6 2330966 43.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/665/GCA_026781665.1_ASM2678166v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_W PRJNA808899 1305 SAMN26135090 ASM2678166v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.810 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 95.2x 95.33 100 0 99.96 0.07 GCF_026781665.1 JAKUVI01 2243 2326 2326 30 3 49 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781685.1 HMT-758 A12021903 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis A12021903 15 2494351 42.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/685/GCA_026781685.1_ASM2678168v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_L PRJNA808899 1305 SAMN26135088 ASM2678168v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.780 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 79.2x 95.2 100 0 100 0.15 GCF_026781685.1 JAKUVK01 2368 2446 2446 33 3 41 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781745.1 HMT-758 15080773Y Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis 15080773Y 62 2361760 43.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/745/GCA_026781745.1_ASM2678174v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_L PRJNA808899 1305 SAMN26135087 ASM2678174v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:06.767 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 119.0x 95.29 100 0.12 99.99 0.39 GCF_026781745.1 JAKUVL01 2220 2300 2300 29 3 47 1 Streptococcus_sanguinis_homd_HMT_758 GCA_026781795.1 HMT-755 D17054061 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius D17054061 34 2170019 39.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/781/795/GCA_026781795.1_ASM2678179v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJNA808899 1304 SAMN26135086 ASM2678179v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:06.753 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 283.4x 95.9 99.84 0.66 99.99 0.02 GCF_026781795.1 JAKUVM01 1975 2069 2069 53 3 37 1 Streptococcus_salivarius_homd_HMT_755 GCA_026782085.1 HMT-707 K16259064 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis K16259064 9 2059438 41.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/085/GCA_026782085.1_ASM2678208v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_DA PRJNA808899 1303 SAMN26135073 ASM2678208v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.577 Denmark:Herlev blood Illumina MiSeq Region Zealand 181.1x 94.82 99.87 0.26 100 0.06 GCF_026782085.1 JAKUVW01 1969 2062 2062 42 3 47 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_026782085.1 HMT-707 K16259064 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis K16259064 9 2059438 41.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/085/GCA_026782085.1_ASM2678208v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_DA PRJNA808899 1303 SAMN26135073 ASM2678208v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.577 Denmark:Herlev blood Illumina MiSeq Region Zealand 181.1x 94.82 99.87 0.26 100 0.06 GCF_026782085.1 JAKUVW01 1969 2062 2062 42 3 47 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782145.1 HMT-707 D15003375 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis D15003375 12 1954562 41.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/145/GCA_026782145.1_ASM2678214v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp030546305 PRJNA808899 1303 SAMN26135072 ASM2678214v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.563 Denmark:Hilleroed blood Illumina MiSeq Region Zealand 120.4x 94.9 99.83 0.2 99.99 0.06 GCF_026782145.1 JAKUVX01 1843 1932 1932 38 3 47 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_026782145.1 HMT-707 D15003375 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis D15003375 12 1954562 41.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/145/GCA_026782145.1_ASM2678214v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp030546305 PRJNA808899 1303 SAMN26135072 ASM2678214v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.563 Denmark:Hilleroed blood Illumina MiSeq Region Zealand 120.4x 94.9 99.83 0.2 99.99 0.06 GCF_026782145.1 JAKUVX01 1843 1932 1932 38 3 47 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782185.1 HMT-398 B14894613 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani B14894613 15 1881068 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/185/GCA_026782185.1_ASM2678218v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA808899 1303 SAMN26135069 ASM2678218v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.517 Denmark:Odense blood Illumina MiSeq Region Zealand 88.4x 94.97 98.91 0.6 99.55 0.05 GCF_026782185.1 JAKUWA01 1810 1889 1889 36 3 39 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_026782185.1 HMT-398 B14894613 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani B14894613 15 1881068 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/185/GCA_026782185.1_ASM2678218v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA808899 1303 SAMN26135069 ASM2678218v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.517 Denmark:Odense blood Illumina MiSeq Region Zealand 88.4x 94.97 98.91 0.6 99.55 0.05 GCF_026782185.1 JAKUWA01 1810 1889 1889 36 3 39 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782195.1 HMT-707 B11338919 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis B11338919 16 2029110 41.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/195/GCA_026782195.1_ASM2678219v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA808899 1303 SAMN26135068 ASM2678219v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.503 Denmark:Odense blood Illumina MiSeq Region Zealand 236.7x 94.64 99.83 0.2 99.99 0.02 GCF_026782195.1 JAKUWB01 1999 2080 2080 39 3 38 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_026782195.1 HMT-707 B11338919 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis B11338919 16 2029110 41.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/195/GCA_026782195.1_ASM2678219v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA808899 1303 SAMN26135068 ASM2678219v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.503 Denmark:Odense blood Illumina MiSeq Region Zealand 236.7x 94.64 99.83 0.2 99.99 0.02 GCF_026782195.1 JAKUWB01 1999 2080 2080 39 3 38 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782305.1 HMT-071 A16000180 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A16000180 9 1955342 41.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/305/GCA_026782305.1_ASM2678230v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA808899 1303 SAMN26135064 ASM2678230v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.450 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 110.7x 93.3 99.87 0.2 99.99 0.02 GCF_026782305.1 JAKUWF01 1864 1982 1982 69 3 45 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_026782305.1 HMT-071 A16000180 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A16000180 9 1955342 41.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/305/GCA_026782305.1_ASM2678230v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA808899 1303 SAMN26135064 ASM2678230v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.450 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 110.7x 93.3 99.87 0.2 99.99 0.02 GCF_026782305.1 JAKUWF01 1864 1982 1982 69 3 45 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782325.1 HMT-707 A15000402 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis A15000402 10 1993585 41.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/325/GCA_026782325.1_ASM2678232v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CS PRJNA808899 1303 SAMN26135062 ASM2678232v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.427 Denmark:Hilleroed blood Illumina MiSeq Region Zealand 81.3x 95.02 99.82 0.2 100 0.02 GCF_026782325.1 JAKUWH01 1860 1948 1948 40 3 44 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_026782325.1 HMT-707 A15000402 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis A15000402 10 1993585 41.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/325/GCA_026782325.1_ASM2678232v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CS PRJNA808899 1303 SAMN26135062 ASM2678232v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.427 Denmark:Hilleroed blood Illumina MiSeq Region Zealand 81.3x 95.02 99.82 0.2 100 0.02 GCF_026782325.1 JAKUWH01 1860 1948 1948 40 3 44 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782365.1 HMT-707 A14000640 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis A14000640 18 2044464 41.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/365/GCA_026782365.1_ASM2678236v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000298695 PRJNA808899 1303 SAMN26135059 ASM2678236v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.387 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 134.2x 94.75 99.87 0.2 99.99 0.1 GCF_026782365.1 JAKUWK01 1953 2029 2029 38 2 35 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_026782365.1 HMT-707 A14000640 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis A14000640 18 2044464 41.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/365/GCA_026782365.1_ASM2678236v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000298695 PRJNA808899 1303 SAMN26135059 ASM2678236v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.387 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 134.2x 94.75 99.87 0.2 99.99 0.1 GCF_026782365.1 JAKUWK01 1953 2029 2029 38 2 35 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782405.1 HMT-071 A14000569 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A14000569 10 1911527 41.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/405/GCA_026782405.1_ASM2678240v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA808899 1303 SAMN26135058 ASM2678240v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.373 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 116.3x 93.33 99.87 0.2 100 0.04 GCF_026782405.1 JAKUWL01 1808 1898 1898 41 3 45 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_026782405.1 HMT-071 A14000569 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A14000569 10 1911527 41.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/405/GCA_026782405.1_ASM2678240v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_W PRJNA808899 1303 SAMN26135058 ASM2678240v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.373 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 116.3x 93.33 99.87 0.2 100 0.04 GCF_026782405.1 JAKUWL01 1808 1898 1898 41 3 45 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782425.1 HMT-707 A14000182 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis A14000182 14 2003805 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/425/GCA_026782425.1_ASM2678242v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000298695 PRJNA808899 1303 SAMN26135057 ASM2678242v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.360 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 109.0x 94.84 99.87 0.2 100 0.03 GCF_026782425.1 JAKUWM01 1884 1969 1969 36 3 45 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_026782425.1 HMT-707 A14000182 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis A14000182 14 2003805 41.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/425/GCA_026782425.1_ASM2678242v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp000298695 PRJNA808899 1303 SAMN26135057 ASM2678242v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.360 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 109.0x 94.84 99.87 0.2 100 0.03 GCF_026782425.1 JAKUWM01 1884 1969 1969 36 3 45 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782445.1 HMT-071 A12068227 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A12068227 17 1946439 40.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/445/GCA_026782445.1_ASM2678244v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_T PRJNA808899 1303 SAMN26135054 ASM2678244v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.320 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 82.6x 92.53 99.83 0.2 99.98 0.13 GCF_026782445.1 JAKUWP01 1836 1946 1946 71 3 35 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_026782445.1 HMT-071 A12068227 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A12068227 17 1946439 40.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/445/GCA_026782445.1_ASM2678244v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_T PRJNA808899 1303 SAMN26135054 ASM2678244v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.320 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 82.6x 92.53 99.83 0.2 99.98 0.13 GCF_026782445.1 JAKUWP01 1836 1946 1946 71 3 35 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782455.1 HMT-071 A13000702 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A13000702 19 1934762 41.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/455/GCA_026782455.1_ASM2678245v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CT PRJNA808899 1303 SAMN26135055 ASM2678245v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.333 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 97.0x 92.58 99.47 0.8 99.98 0.06 GCF_026782455.1 JAKUWO01 1824 1932 1932 69 3 35 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_026782455.1 HMT-071 A13000702 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A13000702 19 1934762 41.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/455/GCA_026782455.1_ASM2678245v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CT PRJNA808899 1303 SAMN26135055 ASM2678245v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.333 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 97.0x 92.58 99.47 0.8 99.98 0.06 GCF_026782455.1 JAKUWO01 1824 1932 1932 69 3 35 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782485.1 HMT-398 A13005712 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani A13005712 15 2005987 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/485/GCA_026782485.1_ASM2678248v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA808899 1303 SAMN26135056 ASM2678248v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.347 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 90.7x 96.44 99.87 0.2 100 0.24 GCF_026782485.1 JAKUWN01 1914 1994 1994 36 3 40 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_026782485.1 HMT-398 A13005712 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani A13005712 15 2005987 40.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/485/GCA_026782485.1_ASM2678248v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA808899 1303 SAMN26135056 ASM2678248v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.347 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 90.7x 96.44 99.87 0.2 100 0.24 GCF_026782485.1 JAKUWN01 1914 1994 1994 36 3 40 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782505.1 HMT-707 A12048293 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis A12048293 12 2018162 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/505/GCA_026782505.1_ASM2678250v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CS PRJNA808899 1303 SAMN26135053 ASM2678250v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.307 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 83.1x 94.85 99.87 0.2 99.99 0.04 GCF_026782505.1 JAKUWQ01 1901 2018 2018 69 3 44 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_026782505.1 HMT-707 A12048293 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis A12048293 12 2018162 41.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/505/GCA_026782505.1_ASM2678250v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CS PRJNA808899 1303 SAMN26135053 ASM2678250v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.307 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 83.1x 94.85 99.87 0.2 99.99 0.04 GCF_026782505.1 JAKUWQ01 1901 2018 2018 69 3 44 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782525.1 HMT-071 A12034485 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A12034485 22 1905304 40.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/525/GCA_026782525.1_ASM2678252v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BM PRJNA808899 1303 SAMN26135050 ASM2678252v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.267 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 78.0x 92.82 99.87 0.2 99.99 0.1 GCF_026782525.1 JAKUWT01 1868 1971 1971 53 3 46 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_026782525.1 HMT-071 A12034485 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A12034485 22 1905304 40.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/525/GCA_026782525.1_ASM2678252v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BM PRJNA808899 1303 SAMN26135050 ASM2678252v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.267 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 78.0x 92.82 99.87 0.2 99.99 0.1 GCF_026782525.1 JAKUWT01 1868 1971 1971 53 3 46 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782545.1 HMT-071 A12046408 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A12046408 9 1867867 41.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/545/GCA_026782545.1_ASM2678254v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA808899 1303 SAMN26135052 ASM2678254v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.293 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 59.7x 93.23 99.87 0.2 99.99 0.04 GCF_026782545.1 JAKUWR01 1779 1870 1870 43 3 44 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_026782545.1 HMT-071 A12046408 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus A12046408 9 1867867 41.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/545/GCA_026782545.1_ASM2678254v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BW PRJNA808899 1303 SAMN26135052 ASM2678254v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.293 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 59.7x 93.23 99.87 0.2 99.99 0.04 GCF_026782545.1 JAKUWR01 1779 1870 1870 43 3 44 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782585.1 HMT-398 A11055407 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani A11055407 10 1816699 41.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/585/GCA_026782585.1_ASM2678258v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA808899 1303 SAMN26135049 ASM2678258v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.253 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 79.7x 95.66 99.82 0.2 99.98 0.02 GCF_026782585.1 JAKUWU01 1716 1800 1800 35 3 45 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_026782585.1 HMT-398 A11055407 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani A11055407 10 1816699 41.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/585/GCA_026782585.1_ASM2678258v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus dentisani PRJNA808899 1303 SAMN26135049 ASM2678258v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.253 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 79.7x 95.66 99.82 0.2 99.98 0.02 GCF_026782585.1 JAKUWU01 1716 1800 1800 35 3 45 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782645.1 HMT-071 100969208172 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 100969208172 11 1918213 40.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/645/GCA_026782645.1_ASM2678264v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BK PRJNA808899 1303 SAMN26135045 ASM2678264v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:06.197 Denmark:Herlev blood Illumina MiSeq Region Zealand 188.0x 92.59 99.87 0.2 100 0.06 GCF_026782645.1 JAKUWY01 1888 1987 1987 51 3 44 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_026782645.1 HMT-071 100969208172 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus 100969208172 11 1918213 40.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/645/GCA_026782645.1_ASM2678264v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_BK PRJNA808899 1303 SAMN26135045 ASM2678264v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:06.197 Denmark:Herlev blood Illumina MiSeq Region Zealand 188.0x 92.59 99.87 0.2 100 0.06 GCF_026782645.1 JAKUWY01 1888 1987 1987 51 3 44 1 Streptococcus_oralis_HMT_071_398_707 GCA_026782685.1 HMT-686 Y16035778 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans Y16035778 11 1983862 36.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/685/GCA_026782685.1_ASM2678268v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA808899 1309 SAMN26135044 ASM2678268v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.183 Denmark:Roskilde blood Illumina MiSeq Region Zealand 130.9x 99.17 100 0.56 100 0.14 GCF_026782685.1 JAKUWZ01 1861 1978 1978 87 3 26 1 Streptococcus_mutans_homd_HMT_686 GCA_026782705.1 HMT-686 B16869671 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B16869671 21 2022536 36.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/705/GCA_026782705.1_ASM2678270v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA808899 1309 SAMN26135043 ASM2678270v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.170 Denmark:Odense blood Illumina MiSeq Region Zealand 143.3x 99.18 100 0.19 100 0.05 GCF_026782705.1 JAKUXA01 1905 1976 1976 40 3 27 1 Streptococcus_mutans_homd_HMT_686 GCA_026782725.1 HMT-686 B16012112 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B16012112 13 1977685 36.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/725/GCA_026782725.1_ASM2678272v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA808899 1309 SAMN26135042 ASM2678272v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:06.157 Denmark:Roskilde blood Illumina MiSeq Region Zealand 196.9x 99.31 100 0 100 0.07 GCF_026782725.1 JAKUXB01 1860 1941 1941 45 3 32 1 Streptococcus_mutans_homd_HMT_686 GCA_026782745.1 HMT-686 B15029983 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B15029983 16 1979353 36.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/745/GCA_026782745.1_ASM2678274v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA808899 1309 SAMN26135041 ASM2678274v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.143 Denmark:Roskilde blood Illumina MiSeq Region Zealand 121.0x 99.17 99.81 0.56 100 0.14 GCF_026782745.1 JAKUXC01 1857 1928 1928 41 3 26 1 Streptococcus_mutans_homd_HMT_686 GCA_026782765.1 HMT-686 B13010740 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B13010740 14 1973536 36.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/765/GCA_026782765.1_ASM2678276v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA808899 1309 SAMN26135040 ASM2678276v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.107 Denmark:Roskilde blood Illumina MiSeq Region Zealand 135.2x 99.14 100 0.75 100 0.1 GCF_026782765.1 JAKUXD01 1854 1931 1931 36 3 37 1 Streptococcus_mutans_homd_HMT_686 GCA_026782785.1 HMT-686 B12305014 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans B12305014 49 2037237 36.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/785/GCA_026782785.1_ASM2678278v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA808899 1309 SAMN26135039 ASM2678278v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.070 Denmark:Odense blood Illumina MiSeq Region Zealand 352.9x 98.88 100 0.96 100 0.1 GCF_026782785.1 JAKUXE01 1851 1948 1948 53 3 40 1 Streptococcus_mutans_homd_HMT_686 GCA_026782805.1 HMT-686 A16000882 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans A16000882 15 1973508 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/805/GCA_026782805.1_ASM2678280v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA808899 1309 SAMN26135038 ASM2678280v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:06.050 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 96.0x 99.16 100 0.56 100 0.07 GCF_026782805.1 JAKUXF01 1857 1917 1917 26 3 30 1 Streptococcus_mutans_homd_HMT_686 GCA_026782825.1 HMT-686 A15000357 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans A15000357 18 1951390 36.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/825/GCA_026782825.1_ASM2678282v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA808899 1309 SAMN26135037 ASM2678282v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.037 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 127.8x 99 100 0.45 100 0.16 GCF_026782825.1 JAKUXG01 1838 1932 1932 59 3 31 1 Streptococcus_mutans_homd_HMT_686 GCA_026782845.1 HMT-686 A14000387 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans A14000387 15 1976909 36.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/845/GCA_026782845.1_ASM2678284v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA808899 1309 SAMN26135036 ASM2678284v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:06.020 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 100.0x 99.16 100 0.56 100 0.14 GCF_026782845.1 JAKUXH01 1869 1947 1947 37 3 37 1 Streptococcus_mutans_homd_HMT_686 GCA_026782865.1 HMT-677 B15023435 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis B15023435 22 1863003 40.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/865/GCA_026782865.1_ASM2678286v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CG PRJNA808899 28037 SAMN26135033 ASM2678286v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:05.980 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 149.1x 93.5 99.68 0.27 99.99 0.48 GCF_026782865.1 JAKUXK01 1726 1828 1828 53 3 45 1 Streptococcus_mitis_homd_HMT_677 GCA_026782885.1 HMT-686 A14000335 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans A14000335 13 1976904 36.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/885/GCA_026782885.1_ASM2678288v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA808899 1309 SAMN26135035 ASM2678288v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:06.007 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 87.5x 99.16 100 0.56 100 0.12 GCF_026782885.1 JAKUXI01 1863 1941 1941 42 3 32 1 Streptococcus_mutans_homd_HMT_686 GCA_026782895.1 HMT-677 D13054009 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis D13054009 11 1990783 40.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/895/GCA_026782895.1_ASM2678289v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_CB PRJNA808899 28037 SAMN26135034 ASM2678289v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:05.993 Denmark:Odense blood Illumina MiSeq Region Zealand 106.4x 94.5 99.47 0.53 99.99 0.04 GCF_026782895.1 JAKUXJ01 1943 2034 2034 46 3 41 1 Streptococcus_mitis_homd_HMT_677 GCA_026783025.1 HMT-622 B17930858 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii B17930858 12 2211146 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/025/GCA_026783025.1_ASM2678302v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA808899 1302 SAMN26135027 ASM2678302v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:05.883 Denmark:Odense blood Illumina MiSeq Region Zealand 137.3x 95.52 100 0.19 99.99 0.13 GCF_026783025.1 JAKUXO01 2088 2161 2161 28 4 40 1 Streptococcus_gordonii_homd_HMT_622 GCA_026783045.1 HMT-622 A16000605 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A16000605 11 2200605 40.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/045/GCA_026783045.1_ASM2678304v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA808899 1302 SAMN26135026 ASM2678304v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:05.870 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 104.4x 95.6 100 0 100 0.2 GCF_026783045.1 JAKUXP01 2067 2140 2140 24 2 46 1 Streptococcus_gordonii_homd_HMT_622 GCA_026783065.1 HMT-622 A14000093 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A14000093 10 2212403 40.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/065/GCA_026783065.1_ASM2678306v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA808899 1302 SAMN26135025 ASM2678306v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:05.850 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 110.9x 95.39 100 0 100 0.18 GCF_026783065.1 JAKUXQ01 2106 2184 2184 27 3 47 1 Streptococcus_gordonii_homd_HMT_622 GCA_026783085.1 HMT-622 A13000540 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A13000540 6 2206727 40.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/085/GCA_026783085.1_ASM2678308v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA808899 1302 SAMN26135024 ASM2678308v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:05.837 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 117.3x 95.7 100 0 99.98 0.05 GCF_026783085.1 JAKUXR01 2095 2172 2172 26 3 47 1 Streptococcus_gordonii_homd_HMT_622 GCA_026783105.1 HMT-622 A13000455 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A13000455 17 2230379 40.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/105/GCA_026783105.1_ASM2678310v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA808899 1302 SAMN26135023 ASM2678310v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:05.823 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 114.7x 95.37 100 0 100 0.08 GCF_026783105.1 JAKUXS01 2148 2223 2223 26 3 45 1 Streptococcus_gordonii_homd_HMT_622 GCA_026783125.1 HMT-622 A11129118 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A11129118 10 2249164 40.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/125/GCA_026783125.1_ASM2678312v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA808899 1302 SAMN26135022 ASM2678312v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:05.770 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 58.7x 95.95 99.81 0 100 0.17 GCF_026783125.1 JAKUXT01 2163 2233 2233 28 3 38 1 Streptococcus_gordonii_homd_HMT_622 GCA_026783145.1 HMT-622 17013687B Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii 17013687B 50 2191635 40.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/145/GCA_026783145.1_ASM2678314v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA808899 1302 SAMN26135020 ASM2678314v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:05.650 Denmark:Roskilde blood Illumina MiSeq Region Zealand 117.3x 95.51 100 0.37 100 0.05 GCF_026783145.1 JAKUXV01 2067 2146 2146 26 4 48 1 Streptococcus_gordonii_homd_HMT_622 GCA_026783165.1 HMT-622 A11029119 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii A11029119 11 2249569 40.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/165/GCA_026783165.1_ASM2678316v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA808899 1302 SAMN26135021 ASM2678316v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:05.703 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 64.9x 95.96 100 0 100 0.17 GCF_026783165.1 JAKUXU01 2163 2234 2234 28 3 39 1 Streptococcus_gordonii_homd_HMT_622 GCA_026783725.1 HMT-389 D14035481 Named Cultivated Oral (Abundance: High) HMT-389 Abiotrophia defectiva D14035481 14 2019498 46.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/725/GCA_026783725.1_ASM2678372v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;s__Abiotrophia defectiva PRJNA808899 46125 SAMN26134991 ASM2678372v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:05.210 Denmark:Odense blood Illumina MiSeq Region Zealand 335.0x 95.81 98.46 0 98.46 0.05 GCF_026783725.1 JAKUYY01 1807 1875 1875 21 3 43 1 Abiotrophia_defectiva_homd_HMT_389 GCA_026783785.1 HMT-578 K13014465 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus K13014465 19 2066313 42.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/785/GCA_026783785.1_ASM2678378v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_I PRJNA808899 45634 SAMN26134990 ASM2678378v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:05.197 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 77.2x 95.13 100 0.12 99.99 0.08 GCF_026783785.1 JAKUYZ01 1989 2061 2061 31 3 37 1 Streptococcus_cristatus_homd_HMT_578 GCA_026783805.1 HMT-767 A15000414 Named Cultivated Oral (Abundance: Scarce) HMT-767 Streptococcus sinensis A15000414 88 2075536 42.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/805/GCA_026783805.1_ASM2678380v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sinensis PRJNA808899 45634 SAMN26134989 ASM2678380v1 Scaffold SPAdes v. 3.13.0 2022-02-21T10:09:05.183 Denmark:Copenhagen blood Illumina MiSeq Region Zealand 93.6x 88.62 100 0 99.99 0.12 GCF_026783805.1 JAKUZA01 1938 2028 2028 51 3 35 1 Streptococcus_sinensis_homd_HMT_767 GCA_026784025.1 HMT-543 100993296213 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus 100993296213 27 1797386 38.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/784/025/GCA_026784025.1_ASM2678402v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA808899 1328 SAMN26134983 ASM2678402v1 Contig SPAdes v. 3.13.0 2022-02-21T10:09:05.100 Denmark:Herlev blood Illumina MiSeq Region Zealand 256.1x 95.03 99.88 0 99.98 0.05 GCF_026784025.1 JAKUZG01 1744 1818 1818 33 3 37 1 Streptococcus_anginosus_homd_HMT_543 GCA_026802095.1 HMT-176 CW Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii CW 1 3104561 67.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/802/095/GCA_026802095.1_ASM2680209v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA887960 1655 SAMN31205636 ASM2680209v1 Chromosome SPAdes v. 3.15.0 2022-10-07T07:05:03.760 Sweden: Malmo Dental biofilm Illumina NovaSeq Malmo University 100.0x 96.68 100 0.95 100 0.04 GCF_026802095.1 2609 2676 2676 14 0 52 1 Actinomyces_naeslundii_homd_HMT_176 GCA_026810185.1 HMT-622 CW Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii CW 1 2204031 40.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/810/185/GCA_026810185.1_ASM2681018v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA887960 1302 SAMN31205635 ASM2681018v1 Chromosome SPAdes v. 3.15.0 2022-10-07T07:02:03.497 Sweden: Malmo Dental biofilm Illumina NovaSeq Malmo University 100.0x 95.32 100 0 100 0.06 GCF_026810185.1 2115 2188 2188 29 0 43 1 Streptococcus_gordonii_homd_HMT_622 GCA_026891875.1 HMT-645 ATCC 10048 Named Cultivated Oral (Abundance: Low) HMT-645 Actinomyces israelii ATCC 10048 75 3873991 71.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/891/875/GCA_026891875.1_ASM2689187v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces israelii PRJNA890381 1659 SAMN31276741 ASM2689187v1 Contig SPAdes v. 3.15.4 2022-10-13T23:19:03.376 missing Illumina HiSeq The University of Hong Kong 364.0x 98.46 97.63 1.18 99.98 0.63 GCF_026891875.1 JAPTMY01 3172 3246 3246 17 0 56 1 Actinomyces_israelii_homd_HMT_645 GCA_026930265.1 HMT-054 CCUG 57942 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-054 Corynebacterium pilbarense CCUG 57942 161 2436250 64.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/930/265/GCA_026930265.1_ASM2693026v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pilbarense PRJNA868159 1288393 SAMN30225186 ASM2693026v1 Contig SPAdes v. 3.14.0 2022-08-10T05:39:03.387 China: Guangzhou ankle aspirate fluid from male patient Illumina Guangdong Provincial Hospital of Traditional Chinese Medicine 100.0x 99.99 97.76 0.44 99.97 0.01 GCF_026930265.1 JANRML01 2197 2266 2266 8 7 53 1 Corynebacterium_pilbarense_homd_HMT_054 GCA_026935945.1 HMT-051 VAG1 Named Cultivated Vaginal (Abundance: Low) HMT-051 Limosilactobacillus vaginalis VAG1 14 1844314 40.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/935/945/GCA_026935945.1_ASM2693594v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus vaginalis PRJNA784112 1633 SAMN23470199 ASM2693594v1 Scaffold Edena v. 3.131028 2021-11-27T15:13:03.980 Brazil:Belo Horizonte vaginal fluid Illumina HiSeq UFMG 1282.0x 99.2 99.46 0.54 99.97 1 GCF_026935945.1 JAKNNW01 1750 1864 1864 37 15 61 1 Limosilactobacillus_vaginalis_homd_HMT_051 GCA_026967675.1 HMT-530 CCSM0331 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes CCSM0331 1 2496923 60.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/967/675/GCA_026967675.1_ASM2696767v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA895196 1734925 SAMN31566135 ASM2696767v1 Complete Genome SOAPdenovo v. 2.0 2022-11-02T05:21:03.310 China:shanghai skin Illumina MiSeq; PacBio Shanghai Institute of Technology 1199.3x 99.6 99.34 0 99.99 0.01 GCF_026967675.1 2313 2393 2393 24 9 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_026970895.1 HMT-023 BIM B-1761 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-023 Delftia acidovorans BIM B-1761 1 6670817 66.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/970/895/GCA_026970895.1_ASM2697089v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas acidovorans PRJNA911061 80866 SAMN32161858 ASM2697089v1 Complete Genome Barapost v. 2022-08-02_edition; Flye v. 2.9.1-b1780; SPAdes v. 3.15.4 2022-12-12T06:59:04.276 Belarus: Minsk water from Slepian water system Oxford Nanopore MinION; Illumina MiSeq Institute of Microbiology, National Academy of Sciences of Belarus 50.0x 97.99 99.85 0.21 100 0.31 GCF_026970895.1 5884 6027 6027 44 15 83 1 Delftia_acidovorans_homd_HMT_023 GCA_027158175.1 HMT-590 R79 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-590 Brevundimonas diminuta R79 14 3359331 67.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/158/175/GCA_027158175.1_ASM2715817v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__Brevundimonas diminuta_D PRJNA911859 293 SAMN32212095 ASM2715817v1 Contig Newbler v. 2.8 2022-12-13T21:51:03.193 China: Binzhou City, Shandong activated sludge from saponification wastewater treatment plant Illumina novaseq 6000 University of Jinan 396.0x 96.11 100 0.32 100 0.08 GCF_027158175.1 JAPVLY01 3198 3268 3268 13 3 54 0 Brevundimonas_diminuta_homd_HMT_590 GCA_027271175.1 HMT-817 Lcr-MH175 Named Cultivated Vaginal (Abundance: High) HMT-817 Lactobacillus crispatus Lcr-MH175 1 2471292 37.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/271/175/GCA_027271175.1_ASM2727117v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus crispatus PRJNA910240 47770 SAMN32119433 ASM2727117v1 Complete Genome BGI v. JUL-2022; Nanopore v. JUL-2022 2022-12-08T21:31:03.293 China:Nanchang vagina BGI&Nanopore Harbin Meihua Biotechnology Co., LTD 150.0x 97.54 99.03 0.74 99.94 0.71 GCF_027271175.1 2547 2691 2691 58 15 70 1 Lactobacillus_crispatus_homd_HMT_817 GCA_027277265.1 HMT-842 URMC_793 Named Cultivated Skin (Abundance: Medium) HMT-842 Campylobacter ureolyticus URMC_793 13 1561454 29.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/277/265/GCA_027277265.1_ASM2727726v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B ureolyticus_B PRJNA914250 827 SAMN32329981 ASM2727726v1 Contig SPAdes v. v3.13.0 2022-12-20T12:28:05.736 USA: New York Other Abscess Illumina MiSeq University of Rochester Medical Center 98.2x 95.62 98.95 0 99.94 0 GCF_027277265.1 JAPXGI01 1581 1629 1629 5 2 40 1 Campylobacter_ureolyticus_homd_HMT_842 GCA_027277305.1 HMT-842 URMC_789 Named Cultivated Skin (Abundance: Medium) HMT-842 Campylobacter ureolyticus URMC_789 9 1621745 29.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/277/305/GCA_027277305.1_ASM2727730v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B ureolyticus PRJNA914250 827 SAMN32329977 ASM2727730v1 Contig SPAdes v. v3.13.0 2022-12-20T12:28:05.700 USA: New York wound Illumina MiSeq University of Rochester Medical Center 83.1x 95.83 98.95 0 99.99 0.01 GCF_027277305.1 JAPXGM01 1671 1719 1719 5 2 40 1 Campylobacter_ureolyticus_homd_HMT_842 GCA_027321625.1 HMT-216 clean1930 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-216 Acidovorax temperans clean1930 124 3778465 63.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/321/625/GCA_027321625.1_ASM2732162v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax;s__Acidovorax temperans PRJNA834572 1871071 SAMN28403642 ASM2732162v1 Contig MEGAHIT v. V1 2022-05-14T03:14:06.603 China: Hunan, Shuikoushan sediment Illumina an eLibrary of Microbial Systematics and Genomics 12.0x 93.88 1.7 95.92 0.92 DAHVJB01 3419 3486 3486 23 1 42 1 Acidovorax_temperans_homd_HMT_216 GCA_027460305.1 HMT-111 PM79KC-AC-4 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM79KC-AC-4 20 1731933 29.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/460/305/GCA_027460305.1_ASM2746030v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629857 ASM2746030v1 Contig Unicycler v. 0.4.9 2022-07-11T08:07:04.483 Spain: Galicia female 63 year old colorectal cancer patient 79 colon adenocarcinoma Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 209.0x 96.95 97.87 0.61 99.72 1.7 GCF_027460305.1 JANDZV01 1571 1659 1659 41 7 39 1 Parvimonas_micra_homd_HMT_111 GCA_027460315.1 HMT-111 PM94KC-G-1 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM94KC-G-1 13 1672481 28.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/460/315/GCA_027460315.1_ASM2746031v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629861 ASM2746031v1 Contig Unicycler v. 0.4.9 2022-07-11T08:07:04.527 Spain: Galicia male 66 year old colorectal cancer patient 94 gingival crevicular fluid Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 232.0x 97.14 97.87 0.61 99.32 1.02 GCF_027460315.1 JANDZW01 1516 1596 1596 35 6 38 1 Parvimonas_micra_homd_HMT_111 GCA_027460345.1 HMT-111 PM79KC-AC-3 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM79KC-AC-3 21 1729584 29.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/460/345/GCA_027460345.1_ASM2746034v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629856 ASM2746034v1 Contig Unicycler v. 0.4.9 2022-07-11T08:07:04.470 Spain: Galicia female 63 year old colorectal cancer patient 79 colon adenocarcinoma Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 177.0x 96.95 97.87 0.61 99.72 1.7 GCF_027460345.1 JANDZU01 1570 1654 1654 41 4 38 1 Parvimonas_micra_homd_HMT_111 GCA_027460365.1 HMT-111 PM79KC-AC-1 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM79KC-AC-1 14 1731212 29.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/460/365/GCA_027460365.1_ASM2746036v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629854 ASM2746036v1 Contig Unicycler v. 0.4.9 2022-07-11T08:07:04.443 Spain: Galicia female 63 year old colorectal cancer patient 79 colon adenocarcinoma Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 161.0x 96.94 97.87 0.61 99.74 1.7 GCF_027460365.1 JANDZT01 1571 1655 1655 41 4 38 1 Parvimonas_micra_homd_HMT_111 GCA_027474905.1 HMT-111 PM79KC-G-1 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM79KC-G-1 1 1678242 28.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/474/905/GCA_027474905.1_ASM2747490v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629853 ASM2747490v1 Complete Genome Unicycler v. 0.4.9 2022-07-11T08:07:04.430 Spain: Galicia Gingival crevicular fluid Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 182.0x 97.37 98.48 0.61 99.75 0.97 GCF_027474905.1 1518 1610 1610 40 10 41 1 Parvimonas_micra_homd_HMT_111 GCA_027474925.1 HMT-111 PM79KC-AC-2 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM79KC-AC-2 1 1755474 29.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/474/925/GCA_027474925.1_ASM2747492v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629855 ASM2747492v1 Complete Genome Unicycler v. 0.4.9 2022-07-11T08:07:04.460 Spain: Galicia Colon adenocarcinoma Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 285.0x 96.94 97.87 0.61 99.75 1.72 GCF_027474925.1 1578 1671 1671 41 10 41 1 Parvimonas_micra_homd_HMT_111 GCA_027474945.1 HMT-111 PM89KC-G-1 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM89KC-G-1 1 1676768 28.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/474/945/GCA_027474945.1_ASM2747494v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629858 ASM2747494v1 Complete Genome Unicycler v. 0.4.9 2022-07-11T08:07:04.497 Spain: Galicia Gingival crevicular fluid Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 231.0x 97.47 98.48 0.61 99.32 0.91 GCF_027474945.1 1545 1631 1631 34 10 41 1 Parvimonas_micra_homd_HMT_111 GCA_027474965.1 HMT-111 PM89KC-G-2 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM89KC-G-2 1 1676568 28.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/474/965/GCA_027474965.1_ASM2747496v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629859 ASM2747496v1 Complete Genome Unicycler v. 0.4.9 2022-07-11T08:07:04.507 Spain: Galicia Gingival crevicular fluid Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 239.0x 97.47 98.48 0.61 99.32 0.91 GCF_027474965.1 1543 1629 1629 34 10 41 1 Parvimonas_micra_homd_HMT_111 GCA_027474985.1 HMT-111 PM89KC-AC-1 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM89KC-AC-1 1 1663572 28.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/474/985/GCA_027474985.1_ASM2747498v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629860 ASM2747498v1 Complete Genome Unicycler v. 0.4.9 2022-07-11T08:07:04.517 Spain: Galicia Colon adenocarcinoma Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 520.0x 97.4 98.48 0.61 99.48 0.84 GCF_027474985.1 1532 1616 1616 32 10 41 1 Parvimonas_micra_homd_HMT_111 GCA_027475005.1 HMT-111 PM102KC-G-1 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM102KC-G-1 1 1733605 29.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/475/005/GCA_027475005.1_ASM2747500v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629862 ASM2747500v1 Complete Genome Unicycler v. 0.4.9 2022-07-11T08:07:04.537 Spain: Galicia Gingival crevicular fluid Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 272.0x 97.29 98.48 0.61 99.46 1.01 GCF_027475005.1 1556 1644 1644 36 10 41 1 Parvimonas_micra_homd_HMT_111 GCA_027475025.1 HMT-111 PM114KC-AC-1 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra PM114KC-AC-1 1 1532745 28.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/475/025/GCA_027475025.1_ASM2747502v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJNA857572 33033 SAMN29629863 ASM2747502v1 Complete Genome Unicycler v. 0.4.9 2022-07-11T08:07:04.550 Spain: Galicia Colon adenocarcinoma Illumina MiSeq; Oxford Nanopore MinION Biomedical research institute (INIBIC) 353.0x 97.34 97.87 0.61 99.29 0.84 GCF_027475025.1 1403 1487 1487 32 10 41 1 Parvimonas_micra_homd_HMT_111 GCA_027497885.1 HMT-677 SM2 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM2 7 1999481 39.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/497/885/GCA_027497885.1_ASM2749788v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA782624 28037 SAMN23390954 ASM2749788v1 Contig SPAdes v. 3.13.0 2021-11-22T16:07:03.897 Germany sputum Illumina MiSeq University Hospital Dresden 39.0x 95.41 99.74 0.2 99.98 0.12 GCF_027497885.1 JAJNRZ01 1847 1948 1948 46 4 50 1 Streptococcus_mitis_homd_HMT_677 GCA_027497935.1 HMT-677 SM4 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis SM4 33 1874967 40.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/497/935/GCA_027497935.1_ASM2749793v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_Y PRJNA782624 28037 SAMN23391073 ASM2749793v1 Contig SPAdes v. 3.13.0 2021-11-22T16:41:05.090 Germany sputum Illumina MiSeq University Hospital Dresden 136.0x 94.58 99.34 0.2 99.99 0.1 GCF_027497935.1 JAJNSB01 1863 1973 1973 62 4 43 1 Streptococcus_mitis_homd_HMT_677 GCA_027594605.1 HMT-120 CGMH-SH53 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus CGMH-SH53 2 2586626 32.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/594/605/GCA_027594605.1_ASM2759460v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA781382 1283 SAMN23247098 ASM2759460v1 Chromosome Flye v. 2.9 2021-11-18T02:14:04.283 Taiwan Chang-Gung Memorial Hospital, Linkou PacBio Chang Gung Memorial Hospital 1.0x 99.37 99.62 0 99.99 0.33 GCF_027594605.1 2470 2652 2652 102 16 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_027594625.1 HMT-120 CGMH-SH51 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus CGMH-SH51 2 2596982 32.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/594/625/GCA_027594625.1_ASM2759462v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA781382 1283 SAMN23247097 ASM2759462v1 Complete Genome Flye v. 2.9 2021-11-18T02:14:04.267 Taiwan Chang-Gung Memorial Hospital, Linkou PacBio Chang Gung Memorial Hospital 1.0x 99.35 99.48 0 99.99 0.41 GCF_027594625.1 2480 2664 2664 101 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_027595705.1 HMT-153 S33_CRE34 Named Cultivated Nasal (Abundance: Medium) HMT-153 Klebsiella aerogenes S33_CRE34 3 5487446 54.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/595/705/GCA_027595705.1_ASM2759570v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella aerogenes PRJNA667445 548 SAMN16387652 ASM2759570v1 Complete Genome Unicycler v. v0.4.7 2020-10-07T11:16:06.713 USA: Durham, NC Lt groin wound Illumina NextSeq; PacBio Sequel University of Alabama in Huntsville 301.0x 98.72 100 0.96 100 1.98 GCF_027595705.1 5147 5391 5391 130 25 88 1 Klebsiella_aerogenes_homd_HMT_153 GCA_027625375.1 HMT-209 ED-3 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus ED-3 1 4114005 66.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/625/375/GCA_027625375.1_ASM2762537v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA915479 3016636 SAMN32394666 ASM2762537v1 Complete Genome SMRT Link v. 5.1.0; Unicycle v. Oct-2021 2022-12-24T02:34:03.210 China: Anhui contaminated soil of pesticide factory Illumina MiSeq; PacBio East China University of Science and Technology 232.0x 99.98 0.36 99.98 0.42 GCF_027625375.1 3862 3951 3951 26 9 53 1 Acidovorax_ebreus_homd_HMT_209 GCA_027627515.1 HMT-692 DSM 43536 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-692 Mycolicibacterium neoaurum DSM 43536 1 5577310 66.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/627/515/GCA_027627515.1_ASM2762751v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium neoaurum_A PRJNA914981 1795 SAMN32364481 ASM2762751v1 Chromosome SOAPdenovo v. 2.04 2022-12-22T07:29:03.680 China:Shanghai soil Illumina HiSeq University of Chinese Academy of Sciences 100.0x 92.83 100 1.63 100 0.03 GCF_027627515.1 5290 5369 5369 27 3 48 1 Mycolicibacterium_neoaurum_homd_HMT_692 GCA_027658535.1 HMT-543 AM109-19 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AM109-19 27 1838285 38.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/658/535/GCA_027658535.1_ASM2765853v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA903559 1328 SAMN31808723 ASM2765853v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:11.863 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.03 99.7 0.35 99.97 0.06 GCF_027658535.1 JAQDRA01 1758 1838 1838 32 3 44 1 Streptococcus_anginosus_homd_HMT_543 GCA_027658645.1 HMT-686 AM109-45 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans AM109-45 24 1975176 36.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/658/645/GCA_027658645.1_ASM2765864v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA903559 1309 SAMN31808731 ASM2765864v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:11.976 China: Shenzhen MGI BGI-Shenzhen 100.0x 99.32 100 0.19 100 0.19 GCF_027658645.1 JAQDRI01 1857 1932 1932 42 3 29 1 Streptococcus_mutans_homd_HMT_686 GCA_027660775.1 HMT-543 AM100_PMO_1D_13A Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AM100_PMO_1D_13A 27 1865134 38.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/660/775/GCA_027660775.1_ASM2766077v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA903559 1328 SAMN31808612 ASM2766077v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:10.620 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.55 100 0 99.99 0.13 GCF_027660775.1 JAQDMU01 1811 1884 1884 35 3 34 1 Streptococcus_anginosus_homd_HMT_543 GCA_027661045.1 HMT-755 AM100_PB1O_1D_1A Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius AM100_PB1O_1D_1A 29 2175338 39.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/661/045/GCA_027661045.1_ASM2766104v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA903559 1304 SAMN31808601 ASM2766104v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:10.516 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.25 99.9 0.19 100 0.07 GCF_027661045.1 JAQDMJ01 1958 2033 2033 34 3 37 1 Streptococcus_salivarius_homd_HMT_755 GCA_027662445.1 HMT-552 AM09-6 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum AM09-6 28 2579474 63.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/662/445/GCA_027662445.1_ASM2766244v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA903559 33010 SAMN31808532 ASM2766244v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:09.753 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.41 100 0 99.99 0.08 GCF_027662445.1 JAQDJS01 2287 2365 2365 25 3 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_027662465.1 HMT-976 AM09-38 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-976 Phocaeicola massiliensis AM09-38 77 4032207 42.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/662/465/GCA_027662465.1_ASM2766246v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola massiliensis PRJNA903559 204516 SAMN31808530 ASM2766246v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:09.733 China: Shenzhen MGI BGI-Shenzhen 100.0x 99.22 99.26 0.56 99.99 0.24 GCF_027662465.1 JAQDJQ01 3409 3491 3491 23 4 54 1 Phocaeicola_massiliensis_homd_HMT_976 GCA_027662825.1 HMT-456 AM07-22C Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis AM07-22C 9 1946708 42.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/662/825/GCA_027662825.1_ASM2766282v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA903559 2382163 SAMN31808513 ASM2766282v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:09.570 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.46 99.83 0.34 99.98 0 GCF_027662825.1 JAQDIZ01 1830 1909 0 29 3 46 1 Streptococcus_ilei_homd_HMT_456 GCA_027663645.1 HMT-456 AM03-4X Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis AM03-4X 12 1988245 41.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/663/645/GCA_027663645.1_ASM2766364v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA903559 2382163 SAMN31808477 ASM2766364v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:09.213 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.45 99.83 0 99.96 0.02 GCF_027663645.1 JAQDHP01 1877 1943 0 31 3 31 1 Streptococcus_ilei_homd_HMT_456 GCA_027663695.1 HMT-411 AM03-12X Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis AM03-12X 15 1947696 42.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/663/695/GCA_027663695.1_ASM2766369v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_C PRJNA903559 1318 SAMN31808474 ASM2766369v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:09.183 China: Shenzhen MGI BGI-Shenzhen 100.0x 94.1 100 0 99.99 0.03 GCF_027663695.1 JAQDHM01 1857 1929 1929 32 3 36 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_027663745.1 HMT-456 AM02-4W Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis AM02-4W 15 1986268 41.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/663/745/GCA_027663745.1_ASM2766374v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA903559 2382163 SAMN31808472 ASM2766374v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:09.166 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.47 99.83 0 99.95 0.02 GCF_027663745.1 JAQDHK01 1872 1942 0 31 3 35 1 Streptococcus_ilei_homd_HMT_456 GCA_027664685.1 HMT-116 AF94-12M2BA Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis AF94-12M2BA 31 2403042 32.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/664/685/GCA_027664685.1_ASM2766468v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA903559 29388 SAMN31808421 ASM2766468v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:08.666 China: Shenzhen MGI BGI-Shenzhen 100.0x 99.72 99.81 0.06 99.99 0.29 GCF_027664685.1 JAQDFL01 2356 2438 2438 58 3 20 1 Staphylococcus_capitis_homd_HMT_116 GCA_027665525.1 HMT-786 AF83-02pH10A Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-786 Paenibacillus phoenicis AF83-02pH10A 226 4969493 52.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/665/525/GCA_027665525.1_ASM2766552v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Fontibacillus;s__Fontibacillus phoenicis PRJNA903559 2997153 SAMN31808386 ASM2766552v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:08.326 China: Shenzhen MGI BGI-Shenzhen 100.0x 99.85 0.59 100 0.11 JAQDEC01 4661 4778 4778 58 4 53 2 Paenibacillus_phoenicis_homd_HMT_786 GCA_027665925.1 HMT-684 AM81-05CM05A Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-684 Mitsuokella multacida AM81-05CM05A 67 2423285 58.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/665/925/GCA_027665925.1_ASM2766592v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;s__Mitsuokella multacida PRJNA903559 52226 SAMN31809290 ASM2766592v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:11.676 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.24 100 0.08 100 0.11 GCF_027665925.1 JAQEIA01 2175 2374 2374 120 5 73 1 Mitsuokella_multacida_homd_HMT_684 GCA_027666825.1 HMT-161 AM72-29pH10A Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula AM72-29pH10A 13 2127353 38.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/666/825/GCA_027666825.1_ASM2766682v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJNA903559 29466 SAMN31809264 ASM2766682v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:11.373 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.41 100 0 99.99 0.27 GCF_027666825.1 JAQEHA01 1940 2002 2002 21 4 36 1 Veillonella_parvula_homd_HMT_161 GCA_027670005.1 HMT-684 AM38-7BH Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-684 Mitsuokella multacida AM38-7BH 55 2323222 58.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/670/005/GCA_027670005.1_ASM2767000v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;s__Mitsuokella multacida PRJNA903559 52226 SAMN31809144 ASM2767000v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:10.146 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.28 100 0.08 99.92 0.09 GCF_027670005.1 JAQECK01 2077 2168 2168 30 3 57 1 Mitsuokella_multacida_homd_HMT_684 GCA_027670365.1 HMT-684 AM32-5 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-684 Mitsuokella multacida AM32-5 88 2453376 58.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/670/365/GCA_027670365.1_ASM2767036v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;s__Mitsuokella multacida PRJNA903559 52226 SAMN31809129 ASM2767036v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:10.000 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.1 100 0.08 99.99 0 GCF_027670365.1 JAQEBV01 2160 2239 2239 24 2 52 1 Mitsuokella_multacida_homd_HMT_684 GCA_027670565.1 HMT-684 AM29-17AC Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-684 Mitsuokella multacida AM29-17AC 159 2414057 58.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/670/565/GCA_027670565.1_ASM2767056v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;s__Mitsuokella multacida PRJNA903559 52226 SAMN31809121 ASM2767056v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:09.926 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.63 98.75 0.78 100 0.25 GCF_027670565.1 JAQEBN01 2127 2368 2368 160 4 76 1 Mitsuokella_multacida_homd_HMT_684 GCA_027671105.1 HMT-622 AM27-23 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii AM27-23 16 2197303 40.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/671/105/GCA_027671105.1_ASM2767110v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA903559 1302 SAMN31809105 ASM2767110v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:09.760 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.5 100 0 100 0.04 GCF_027671105.1 JAQEAY01 2032 2113 2113 33 3 44 1 Streptococcus_gordonii_homd_HMT_622 GCA_027671285.1 HMT-684 AM25-2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-684 Mitsuokella multacida AM25-2 136 2479331 58.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/671/285/GCA_027671285.1_ASM2767128v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;s__Mitsuokella multacida PRJNA903559 52226 SAMN31809095 ASM2767128v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:09.666 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.69 98.82 1.4 100 1.93 GCF_027671285.1 JAQEAO01 2207 2298 2298 26 3 61 1 Mitsuokella_multacida_homd_HMT_684 GCA_027672465.1 HMT-543 AM113-93 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AM113-93 19 1837737 38.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/672/465/GCA_027672465.1_ASM2767246v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA903559 1328 SAMN31809036 ASM2767246v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:09.113 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.74 99.88 0.07 100 0.03 GCF_027672465.1 JAQDYH01 1766 1850 1850 39 3 41 1 Streptococcus_anginosus_homd_HMT_543 GCA_027672485.1 HMT-543 AM113-92 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AM113-92 34 1938107 38.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/672/485/GCA_027672485.1_ASM2767248v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA903559 1328 SAMN31809035 ASM2767248v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:09.103 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.9 99.88 0.3 100 0.1 GCF_027672485.1 JAQDYG01 1924 2009 2009 48 3 33 1 Streptococcus_anginosus_homd_HMT_543 GCA_027672805.1 HMT-543 AM113-67 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AM113-67 23 1837705 38.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/672/805/GCA_027672805.1_ASM2767280v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA903559 1328 SAMN31809021 ASM2767280v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:08.966 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.74 99.88 0.07 100 0.03 GCF_027672805.1 JAQDXS01 1767 1843 1843 39 6 30 1 Streptococcus_anginosus_homd_HMT_543 GCA_027673585.1 HMT-543 AM113-188 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AM113-188 38 1933320 38.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/673/585/GCA_027673585.1_ASM2767358v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA903559 1328 SAMN31808986 ASM2767358v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:08.616 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.9 99.88 0.3 100 0.09 GCF_027673585.1 JAQDWJ01 1924 1998 1998 35 3 35 1 Streptococcus_anginosus_homd_HMT_543 GCA_027675265.1 HMT-755 AM110-184 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius AM110-184 8 2109242 40.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/675/265/GCA_027675265.1_ASM2767526v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA903559 1304 SAMN31808908 ASM2767526v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:20:07.793 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.51 99.9 0.15 99.97 0.07 GCF_027675265.1 JAQDTJ01 1908 1969 1969 28 3 29 1 Streptococcus_salivarius_homd_HMT_755 GCA_027680525.1 HMT-655 AF73-07pH9A Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-655 Eubacterium limosum AF73-07pH9A 21 4383346 47.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/680/525/GCA_027680525.1_ASM2768052v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__Eubacterium limosum PRJNA903559 1736 SAMN31808080 ASM2768052v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:10.410 China: Shenzhen MGI BGI-Shenzhen 100.0x 98.42 99.3 0 100 0.97 GCF_027680525.1 JAQDDJ01 4131 4294 4294 108 4 50 1 Eubacterium_limosum_homd_HMT_655 GCA_027681865.1 HMT-865 AF57-07b16A Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-865 Kluyvera ascorbata AF57-07b16A 49 4943478 54.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/681/865/GCA_027681865.1_ASM2768186v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera;s__Kluyvera ascorbata PRJNA903559 51288 SAMN31808010 ASM2768186v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:09.670 China: Shenzhen MGI BGI-Shenzhen 100.0x 98.59 99.69 0.63 100 0.04 GCF_027681865.1 JAQDAS01 4550 4760 4760 128 4 77 1 Kluyvera_ascorbata_homd_HMT_865 GCA_027682085.1 HMT-202 AF55-12MHA Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum AF55-12MHA 22 2339255 26.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/682/085/GCA_027682085.1_ASM2768208v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA903559 76857 SAMN31808000 ASM2768208v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:09.563 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.96 100 0 99.99 0.34 GCF_027682085.1 JAQDAI01 2215 2294 2294 24 3 51 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_027682715.1 HMT-291 AF51-2-b9A Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola AF51-2-b9A 33 2969575 50.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/682/715/GCA_027682715.1_ASM2768271v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJNA903559 28129 SAMN31807970 ASM2768271v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:09.263 China: Shenzhen MGI BGI-Shenzhen 100.0x 98.02 99.32 0.08 99.88 0.12 GCF_027682715.1 JAQCZE01 2420 2482 2482 9 3 49 1 Prevotella_denticola_homd_HMT_291 GCA_027683265.1 HMT-686 AF36-21BH Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans AF36-21BH 17 2019416 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/683/265/GCA_027683265.1_ASM2768326v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA903559 1309 SAMN31807943 ASM2768326v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:08.990 China: Shenzhen MGI BGI-Shenzhen 100.0x 99.41 100 0.19 100 0.06 GCF_027683265.1 JAQCYD01 1902 1971 1971 26 3 39 1 Streptococcus_mutans_homd_HMT_686 GCA_027683585.1 HMT-961 AF32-9BH Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-961 Faecalibacterium prausnitzii AF32-9BH 34 3271509 55.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/683/585/GCA_027683585.1_ASM2768358v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii PRJNA903559 853 SAMN31807928 ASM2768358v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:08.840 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.25 100 0 99.92 1.32 GCF_027683585.1 JAQCXO01 3058 3180 3180 40 4 77 1 Faecalibacterium_prausnitzii_homd_HMT_961 GCA_027683955.1 HMT-976 AF25-14LB Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-976 Phocaeicola massiliensis AF25-14LB 62 3917087 42.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/683/955/GCA_027683955.1_ASM2768395v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola massiliensis PRJNA903559 204516 SAMN31807907 ASM2768395v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:08.630 China: Shenzhen MGI BGI-Shenzhen 100.0x 98.95 99.26 0.19 99.92 0 GCF_027683955.1 JAQCWT01 3271 3358 3358 30 3 53 1 Phocaeicola_massiliensis_homd_HMT_976 GCA_027685345.1 HMT-524 AF13-8 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica AF13-8 27 2050961 38.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/685/345/GCA_027685345.1_ASM2768534v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA903559 39777 SAMN31807851 ASM2768534v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:08.070 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.55 100 0.6 100 0.14 GCF_027685345.1 JAQCUP01 1846 1909 1909 19 3 40 1 Veillonella_atypica_homd_HMT_524 GCA_027685745.1 HMT-755 AF11-9H Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius AF11-9H 26 2141896 39.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/685/745/GCA_027685745.1_ASM2768574v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJNA903559 1304 SAMN31807832 ASM2768574v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:07.873 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.11 99.46 0.22 99.99 0.02 GCF_027685745.1 JAQCTW01 1969 2035 2035 31 3 31 1 Streptococcus_salivarius_homd_HMT_755 GCA_027685845.1 HMT-543 AF11-3H Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AF11-3H 14 1901005 38.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/685/845/GCA_027685845.1_ASM2768584v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA903559 1328 SAMN31807828 ASM2768584v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:07.833 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.05 99.88 0 100 0.13 GCF_027685845.1 JAQCTS01 1876 1945 1945 34 3 31 1 Streptococcus_anginosus_homd_HMT_543 GCA_027686135.1 HMT-977 AF102-87 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-977 Phocaeicola plebeius AF102-87 104 3852563 44.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/686/135/GCA_027686135.1_ASM2768613v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius PRJNA903559 310297 SAMN31807814 ASM2768613v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:07.696 China: Shenzhen MGI BGI-Shenzhen 100.0x 97.01 99.25 0.37 99.99 0.11 GCF_027686135.1 JAQCTE01 3336 3432 3432 29 2 64 1 Phocaeicola_plebeius_homd_HMT_977 GCA_027686445.1 HMT-969 AF102-42 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-969 Bacteroides stercoris AF102-42 47 3900626 46.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/686/445/GCA_027686445.1_ASM2768644v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris PRJNA903559 46506 SAMN31807801 ASM2768644v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:07.566 China: Shenzhen MGI BGI-Shenzhen 100.0x 98.77 99.26 0.37 99.72 0.42 GCF_027686445.1 JAQCSR01 3323 3397 3397 18 4 52 0 Bacteroides_stercoris_homd_HMT_969 GCA_027686485.1 HMT-977 AF102-36 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-977 Phocaeicola plebeius AF102-36 96 3854113 44.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/686/485/GCA_027686485.1_ASM2768648v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius PRJNA903559 310297 SAMN31807799 ASM2768648v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:07.546 China: Shenzhen MGI BGI-Shenzhen 100.0x 97.01 99.25 0.37 99.99 0.12 GCF_027686485.1 JAQCSP01 3337 3445 3445 29 3 75 1 Phocaeicola_plebeius_homd_HMT_977 GCA_027686705.1 HMT-758 AF101-85 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis AF101-85 13 2407738 43.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/686/705/GCA_027686705.1_ASM2768670v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_L PRJNA903559 1305 SAMN31807786 ASM2768670v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:07.410 China: Shenzhen MGI BGI-Shenzhen 100.0x 94.9 100 0 99.99 0.1 GCF_027686705.1 JAQCSC01 2303 2376 2376 29 3 40 1 Streptococcus_sanguinis_homd_HMT_758 GCA_027687505.1 HMT-543 AF07-5B Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AF07-5B 47 1817571 38.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/687/505/GCA_027687505.1_ASM2768750v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA903559 1328 SAMN31807747 ASM2768750v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:07.006 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.15 99.88 0 99.95 0.07 GCF_027687505.1 JAQCQP01 1720 1792 1792 32 6 33 1 Streptococcus_anginosus_homd_HMT_543 GCA_027687595.1 HMT-456 AF07-23B Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis AF07-23B 20 2054930 42.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/687/595/GCA_027687595.1_ASM2768759v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA903559 2382163 SAMN31807744 ASM2768759v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:06.976 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.64 99.66 0 99.99 0.02 GCF_027687595.1 JAQCQM01 1939 2006 0 29 6 31 1 Streptococcus_ilei_homd_HMT_456 GCA_027687665.1 HMT-456 AF07-19 Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis AF07-19 5 2006976 42.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/687/665/GCA_027687665.1_ASM2768766v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJNA903559 2382163 SAMN31807741 ASM2768766v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:06.946 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.63 99.49 0 99.99 0.02 GCF_027687665.1 JAQCQJ01 1884 1947 0 29 3 30 1 Streptococcus_ilei_homd_HMT_456 GCA_027687775.1 HMT-622 AF07-10B Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii AF07-10B 22 2132479 40.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/687/775/GCA_027687775.1_ASM2768777v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA903559 1302 SAMN31807735 ASM2768777v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T03:09:06.880 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.35 100 0 99.99 0.1 GCF_027687775.1 JAQCQD01 2001 2069 2069 28 6 33 1 Streptococcus_gordonii_homd_HMT_622 GCA_027689215.1 HMT-127 TM114-130 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis TM114-130 24 2173824 31.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/689/215/GCA_027689215.1_ASM2768921v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA903559 1290 SAMN31809892 ASM2768921v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:18.446 China: Shenzhen MGI BGI-Shenzhen 100.0x 99.1 99.38 0.57 99.98 0.02 GCF_027689215.1 JAQFFA01 2099 2168 2168 51 2 15 1 Staphylococcus_hominis_homd_HMT_127 GCA_027689245.1 HMT-127 TM114-127 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis TM114-127 24 2182385 31.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/689/245/GCA_027689245.1_ASM2768924v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA903559 1290 SAMN31809889 ASM2768924v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:18.416 China: Shenzhen MGI BGI-Shenzhen 100.0x 99.1 99.38 0.57 99.98 0.02 GCF_027689245.1 JAQFEX01 2101 2181 2181 51 4 24 1 Staphylococcus_hominis_homd_HMT_127 GCA_027689395.1 HMT-127 TM114-05 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis TM114-05 26 2180566 31.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/689/395/GCA_027689395.1_ASM2768939v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA903559 1290 SAMN31809881 ASM2768939v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:18.340 China: Shenzhen MGI BGI-Shenzhen 100.0x 99.09 99.38 0.57 99.98 0.02 GCF_027689395.1 JAQFEP01 2102 2185 2185 51 4 27 1 Staphylococcus_hominis_homd_HMT_127 GCA_027689675.1 HMT-127 TM114-128 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis TM114-128 23 2177331 31.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/689/675/GCA_027689675.1_ASM2768967v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA903559 1290 SAMN31809890 ASM2768967v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:18.426 China: Shenzhen MGI BGI-Shenzhen 100.0x 99.09 99.38 0.57 99.98 0.02 GCF_027689675.1 JAQFEY01 2102 2186 2186 51 4 28 1 Staphylococcus_hominis_homd_HMT_127 GCA_027690995.1 HMT-552 TF03-1 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum TF03-1 30 2576590 63.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/690/995/GCA_027690995.1_ASM2769099v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA903559 33010 SAMN31809801 ASM2769099v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:17.580 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.41 100 0 99.99 0.08 GCF_027690995.1 JAQFBN01 2280 2358 2358 25 3 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_027692585.1 HMT-709 OF48-6pH5A Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-709 Limosilactobacillus oris OF48-6pH5A 73 2155462 49.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/692/585/GCA_027692585.1_ASM2769258v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus oris PRJNA903559 1632 SAMN31809745 ASM2769258v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:17.036 China: Shenzhen MGI BGI-Shenzhen 100.0x 99.37 99.45 0 99.96 0.68 GCF_027692585.1 JAQEZJ01 2069 2165 2165 25 3 67 1 Limosilactobacillus_oris_homd_HMT_709 GCA_027693065.1 HMT-411 OF28-12pH9A Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis OF28-12pH9A 3 2057713 42.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/693/065/GCA_027693065.1_ASM2769306v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001813105 PRJNA903559 2998073 SAMN31809701 ASM2769306v1 Contig SOAPdenovo v. v2.04 2022-11-21T05:32:16.623 China: Shenzhen MGI BGI-Shenzhen 100.0x 100 0 99.99 0.02 JAQEXR01 1914 2000 2000 33 3 49 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_027693505.1 HMT-977 OF30-13pH9A Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-977 Phocaeicola plebeius OF30-13pH9A 132 3663941 44.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/693/505/GCA_027693505.1_ASM2769350v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius PRJNA903559 310297 SAMN31809711 ASM2769350v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:16.713 China: Shenzhen MGI BGI-Shenzhen 100.0x 97.14 99.25 0 99.89 0.05 GCF_027693505.1 JAQEYB01 3135 3226 3226 20 3 67 1 Phocaeicola_plebeius_homd_HMT_977 GCA_027694265.1 HMT-758 OF14-9A Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis OF14-9A 16 2375877 43.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/694/265/GCA_027694265.1_ASM2769426v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_H PRJNA903559 1305 SAMN31809653 ASM2769426v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:16.146 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.07 100 0 100 0.08 GCF_027694265.1 JAQEVV01 2284 2369 2369 35 4 45 1 Streptococcus_sanguinis_homd_HMT_758 GCA_027696905.1 HMT-560 CM02-09b3TA Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae CM02-09b3TA 42 3354828 50.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/696/905/GCA_027696905.1_ASM2769690v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJNA903559 28126 SAMN31809581 ASM2769690v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:14.403 China: Shenzhen MGI BGI-Shenzhen 100.0x 98.55 99.31 0 99.96 0.01 GCF_027696905.1 JAQETB01 2751 2814 2814 6 4 52 1 Segatella_buccae_homd_HMT_560 GCA_027696975.1 HMT-560 CM02-06A Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae CM02-06A 61 3264850 50.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/696/975/GCA_027696975.1_ASM2769697v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJNA903559 28126 SAMN31809580 ASM2769697v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:14.396 China: Shenzhen MGI BGI-Shenzhen 100.0x 98.52 99.31 0 99.97 0 GCF_027696975.1 JAQETA01 2691 2753 2753 8 3 50 1 Segatella_buccae_homd_HMT_560 GCA_027697045.1 HMT-552 CM01-37 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum CM01-37 26 2578013 63.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/697/045/GCA_027697045.1_ASM2769704v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA903559 33010 SAMN31809577 ASM2769704v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:14.360 China: Shenzhen MGI BGI-Shenzhen 100.0x 96.42 100 0 99.99 0.08 GCF_027697045.1 JAQESX01 2282 2360 2360 25 3 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_027698225.1 HMT-543 AM93-01IFCA Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AM93-01IFCA 34 1890459 38.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/698/225/GCA_027698225.1_ASM2769822v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA903559 1328 SAMN31809530 ASM2769822v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T05:32:12.696 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.94 100 0.3 100 0.07 GCF_027698225.1 JAQERC01 1870 1964 1964 56 3 34 1 Streptococcus_anginosus_homd_HMT_543 GCA_027722505.1 HMT-543 AM109-43 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AM109-43 32 1822684 39.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/722/505/GCA_027722505.1_ASM2772250v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJNA903559 1328 SAMN31808730 ASM2772250v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:11.933 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.66 99.88 0.43 99.97 0.14 GCF_027722505.1 JAQDRH01 1741 1811 1811 34 3 32 1 Streptococcus_anginosus_homd_HMT_543 GCA_027723265.1 HMT-543 AM109-95 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus AM109-95 30 1823752 39.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/723/265/GCA_027723265.1_ASM2772326v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA903559 1328 SAMN31808750 ASM2772326v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:12.220 China: Shenzhen MGI BGI-Shenzhen 100.0x 95.66 99.88 0.43 99.97 0.14 GCF_027723265.1 JAQDSB01 1742 1816 1816 33 3 37 1 Streptococcus_anginosus_homd_HMT_543 GCA_027723325.1 HMT-576 AM109-96 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus AM109-96 15 1821433 37.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/723/325/GCA_027723325.1_ASM2772332v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA903559 76860 SAMN31808751 ASM2772332v1 Scaffold SOAPdenovo v. v2.04 2022-11-21T04:44:12.230 China: Shenzhen MGI BGI-Shenzhen 100.0x 97.56 99 0 99.9 0.09 GCF_027723325.1 JAQDSC01 1753 1829 1829 29 3 43 1 Streptococcus_constellatus_homd_HMT_576 GCA_027857015.1 HMT-692 DSM 1381 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-692 Mycolicibacterium neoaurum DSM 1381 1 5578016 66.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/857/015/GCA_027857015.1_ASM2785701v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;s__Mycobacterium neoaurum_A PRJNA914683 1795 SAMN32362212 ASM2785701v1 Chromosome SOAPdenovo v. 2.04 2022-12-22T05:20:04.843 China:Shanghai mutagenesis Illumina HiSeq University of Chinese Academy of Sciences 100.0x 92.83 100 1.63 100 0.02 GCF_027857015.1 5287 5366 5366 27 3 48 1 Mycolicibacterium_neoaurum_homd_HMT_692 GCA_027945475.1 HMT-893 WVU627 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 WVU627 2 3103474 68.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/945/475/GCA_027945475.1_ASM2794547v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA922958 544580 SAMN32678409 ASM2794547v1 Complete Genome Unicyler v. 0.4.8 2023-01-11T13:05:03.307 USA: Ohio oral cavity Illumina; Oxford Nanopore GridION Ohio State University 40.0x 96.56 100 0.47 100 0.09 GCF_027945475.1 2534 2611 2611 14 9 53 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_027945475.1 HMT-893 WVU627 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 WVU627 2 3103474 68.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/945/475/GCA_027945475.1_ASM2794547v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA922958 544580 SAMN32678409 ASM2794547v1 Complete Genome Unicyler v. 0.4.8 2023-01-11T13:05:03.307 USA: Ohio oral cavity Illumina; Oxford Nanopore GridION Ohio State University 40.0x 96.56 100 0.47 100 0.09 GCF_027945475.1 2534 2611 2611 14 9 53 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_027947475.1 HMT-202 JD-Fn1 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum JD-Fn1 1 2470422 26.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/947/475/GCA_027947475.1_ASM2794747v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA923398 851 SAMN32721952 ASM2794747v1 Complete Genome HGAP v. 2022-10-20; CANU v. 2022-10-18 2023-01-12T21:42:03.903 China: Shanghai Oral saliva sample of a patient with periodontal disease Illumina NovaSeq; Oxford Nanopore Shanghai Jiao Tong University School of Medicine 410.0x 92.38 100 0 100 0.58 GCF_027947475.1 2281 2367 2367 23 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_028307985.1 HMT-021 DP3_2B_2 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis DP3_2B_2 121 1990877 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/307/985/GCA_028307985.1_ASM2830798v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA880893 1343 SAMN30875296 ASM2830798v1 Contig ABySS v. 2 2022-09-15T15:07:03.396 USA: Buffalo, NY Supragingival and interproximal dental plaque Illumina MiSeq Massachusetts Institute of Technology 1.0x 96.8 99.9 0.23 100 0 GCF_028307985.1 JAQMFQ01 1895 2002 2002 53 4 49 1 Streptococcus_vestibularis_homd_HMT_021 GCA_028308045.1 HMT-021 DP3_4 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis DP3_4 145 1989572 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/308/045/GCA_028308045.1_ASM2830804v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA880893 1343 SAMN30875295 ASM2830804v1 Contig ABySS v. 2 2022-09-15T15:05:05.810 USA: Buffalo, NY Supragingival and interproximal dental plaque Illumina MiSeq Massachusetts Institute of Technology 1.0x 96.8 99.9 0.23 100 0 GCF_028308045.1 JAQMFR01 1884 1994 1994 55 4 50 1 Streptococcus_vestibularis_homd_HMT_021 GCA_028308115.1 HMT-021 DP3_6B Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis DP3_6B 126 1993697 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/308/115/GCA_028308115.1_ASM2830811v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA880893 1343 SAMN30875173 ASM2830811v1 Contig ABySS v. 2 2022-09-15T14:36:03.736 USA: Buffalo, NY Supragingival and interproximal dental plaque Illumina MiSeq Massachusetts Institute of Technology 1.0x 96.8 99.9 0.23 100 0 GCF_028308115.1 JAQMFU01 1893 2002 2002 54 5 49 1 Streptococcus_vestibularis_homd_HMT_021 GCA_028308145.1 HMT-021 DP3_6A_2 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis DP3_6A_2 104 1995339 39.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/308/145/GCA_028308145.1_ASM2830814v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA880893 1343 SAMN30875238 ASM2830814v1 Scaffold ABySS v. 2 2022-09-15T14:39:03.463 USA: Buffalo, NY Supragingival and interproximal dental plaque Illumina MiSeq Massachusetts Institute of Technology 1.0x 96.8 99.9 0.23 100 0 GCF_028308145.1 JAQMFT01 1899 2006 2006 53 4 49 1 Streptococcus_vestibularis_homd_HMT_021 GCA_028308185.1 HMT-021 DP3_9B Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis DP3_9B 146 1988678 39.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/308/185/GCA_028308185.1_ASM2830818v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA880893 1343 SAMN30875172 ASM2830818v1 Scaffold ABySS v. 2 2022-09-15T14:34:03.470 USA: Buffalo, NY Supragingival and interproximal dental plaque Illumina MiSeq Massachusetts Institute of Technology 1.0x 96.8 99.9 0.23 100 0 GCF_028308185.1 JAQMFV01 1887 1996 1996 54 5 49 1 Streptococcus_vestibularis_homd_HMT_021 GCA_028308465.1 HMT-021 DP4_2A Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis DP4_2A 153 1964172 39.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/308/465/GCA_028308465.1_ASM2830846v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA880893 1343 SAMN30874361 ASM2830846v1 Contig ABySS v. 2 2022-09-15T12:48:03.420 USA: Buffalo, NY Supragingival and interproximal dental plaque Illumina MiSeq Massachusetts Institute of Technology 1.0x 97.11 99.9 0.38 100 0 GCF_028308465.1 JAQMFX01 1838 1940 1940 49 3 49 1 Streptococcus_vestibularis_homd_HMT_021 GCA_028322385.1 HMT-960 D53st1_E10_D53t1_180928 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-960 Agathobacter rectalis D53st1_E10_D53t1_180928 38 2926079 41.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/322/385/GCA_028322385.1_ASM2832238v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__Agathobacter rectalis PRJNA880610 39491 SAMN31322556 ASM2832238v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:13.346 USA Illumina HiSeq Icahn School of Medicine 76.9x 97.72 99.52 0.72 99.89 0.6 GCF_028322385.1 JAQLYA01 2715 2832 2832 57 2 57 1 Agathobacter_rectalis_homd_HMT_960 GCA_028322445.1 HMT-960 D53st1_B3_D53t1_180928 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-960 Agathobacter rectalis D53st1_B3_D53t1_180928 33 2792771 41.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/322/445/GCA_028322445.1_ASM2832244v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__Agathobacter rectalis PRJNA880610 39491 SAMN31322555 ASM2832244v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:13.340 USA Illumina HiSeq Icahn School of Medicine 57.8x 97.82 99.52 0.48 99.86 0.39 GCF_028322445.1 JAQLYB01 2566 2682 2682 50 5 60 1 Agathobacter_rectalis_homd_HMT_960 GCA_028325405.1 HMT-686 D40st1_F5_D40t1_170626 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans D40st1_F5_D40t1_170626 22 1999617 36.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/405/GCA_028325405.1_ASM2832540v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA880610 1309 SAMN31322924 ASM2832540v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.793 USA Illumina HiSeq Icahn School of Medicine 30.6x 99.33 100 0.19 100 0.13 GCF_028325405.1 JAQMKB01 1858 1949 1949 45 6 39 1 Streptococcus_mutans_homd_HMT_686 GCA_028325485.1 HMT-755 1001283st1_F4_1001283B150210_160208 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 1001283st1_F4_1001283B150210_160208 26 2182553 39.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/485/GCA_028325485.1_ASM2832548v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA880610 1304 SAMN31322939 ASM2832548v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.927 USA Illumina HiSeq Icahn School of Medicine 75.2x 96.56 99.84 1.46 99.99 0.03 GCF_028325485.1 JAQMJN01 1987 2064 2064 29 3 44 1 Streptococcus_salivarius_homd_HMT_755 GCA_028325505.1 HMT-755 1001713st1_G9_1001713B170207_170306 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 1001713st1_G9_1001713B170207_170306 11 2154846 39.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/505/GCA_028325505.1_ASM2832550v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA880610 1304 SAMN31322943 ASM2832550v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.962 USA Illumina HiSeq Icahn School of Medicine 47.4x 96.53 99.9 0.58 100 0.04 GCF_028325505.1 JAQMJJ01 1934 2017 2017 33 10 39 1 Streptococcus_salivarius_homd_HMT_755 GCA_028325525.1 HMT-755 1001713st1_A2_1001713B170131_170501 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 1001713st1_A2_1001713B170131_170501 19 2156556 39.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/525/GCA_028325525.1_ASM2832552v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA880610 1304 SAMN31322941 ASM2832552v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.944 USA Illumina HiSeq Icahn School of Medicine 62.8x 96.55 99.9 0.58 100 0.01 GCF_028325525.1 JAQMJL01 1937 2025 2025 34 9 44 1 Streptococcus_salivarius_homd_HMT_755 GCA_028325655.1 HMT-755 1001713st1_D3_1001713B170207_170306 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius 1001713st1_D3_1001713B170207_170306 14 2158320 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/655/GCA_028325655.1_ASM2832565v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA880610 1304 SAMN31322942 ASM2832565v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.952 USA Illumina HiSeq Icahn School of Medicine 55.6x 96.54 99.9 0.58 100 0.13 GCF_028325655.1 JAQMJK01 1938 2026 2026 34 9 44 1 Streptococcus_salivarius_homd_HMT_755 GCA_028325865.1 HMT-411 1001262st2_G8_1001262B_160229 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 1001262st2_G8_1001262B_160229 31 2070209 42.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/865/GCA_028325865.1_ASM2832586v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_F PRJNA880610 1318 SAMN31322930 ASM2832586v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.847 USA Illumina HiSeq Icahn School of Medicine 75.4x 94.18 100 0.51 99.99 0 GCF_028325865.1 JAQMJV01 1951 2041 2041 42 3 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_028325895.1 HMT-411 1001262st1_D8_1001262B_160229 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 1001262st1_D8_1001262B_160229 20 2134200 41.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/895/GCA_028325895.1_ASM2832589v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_Q PRJNA880610 1318 SAMN31322929 ASM2832589v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.838 USA Illumina HiSeq Icahn School of Medicine 91.0x 93.71 100 0 100 0.02 GCF_028325895.1 JAQMJW01 2024 2106 2106 35 3 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_028325945.1 HMT-686 1001095st1_C11_1001095IJ_161003 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1001095st1_C11_1001095IJ_161003 22 1997461 36.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/945/GCA_028325945.1_ASM2832594v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA880610 1309 SAMN31322917 ASM2832594v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.708 USA Illumina HiSeq Icahn School of Medicine 29.6x 99.28 100 0 100 0.11 GCF_028325945.1 JAQMKG01 1867 1944 1944 30 5 41 1 Streptococcus_mutans_homd_HMT_686 GCA_028325965.1 HMT-411 1001216st1_G2_1001216I_160404 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 1001216st1_G2_1001216I_160404 23 2091888 42.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/965/GCA_028325965.1_ASM2832596v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_V PRJNA880610 1318 SAMN31322928 ASM2832596v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.829 USA Illumina HiSeq Icahn School of Medicine 29.2x 94.11 99.83 0.12 99.99 0 GCF_028325965.1 JAQMJX01 1970 2054 2054 38 3 42 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_028325975.1 HMT-411 1001216st1_C12_1001216I_160404 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 1001216st1_C12_1001216I_160404 43 2117706 42.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/975/GCA_028325975.1_ASM2832597v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_V PRJNA880610 1318 SAMN31322927 ASM2832597v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.821 USA Illumina HiSeq Icahn School of Medicine 27.9x 94.13 100 0.12 99.99 0 GCF_028325975.1 JAQMJY01 1996 2082 2082 39 3 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_028326025.1 HMT-411 1001095st1_G10_1001095IJ_161003 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis 1001095st1_G10_1001095IJ_161003 22 2152783 41.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/025/GCA_028326025.1_ASM2832602v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_Q PRJNA880610 1318 SAMN31322926 ASM2832602v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.811 USA Illumina HiSeq Icahn School of Medicine 26.9x 93.91 100 0.17 100 0.02 GCF_028326025.1 JAQMJZ01 2039 2124 2124 37 3 44 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_028326035.1 HMT-686 RTP21191st1_H7_RTP21191_200730 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans RTP21191st1_H7_RTP21191_200730 13 1955456 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/035/GCA_028326035.1_ASM2832603v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA880610 1309 SAMN31322925 ASM2832603v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.802 USA Illumina HiSeq Icahn School of Medicine 25.5x 99.11 100 0.37 100 0.09 GCF_028326035.1 JAQMKA01 1823 1896 1896 26 3 43 1 Streptococcus_mutans_homd_HMT_686 GCA_028326065.1 HMT-686 1001270st1_A5_1001270J_160509 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1001270st1_A5_1001270J_160509 181 1973213 36.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/065/GCA_028326065.1_ASM2832606v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA880610 1309 SAMN31322923 ASM2832606v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.781 USA Illumina HiSeq Icahn School of Medicine 67.3x 99.28 100 0.56 100 0.16 GCF_028326065.1 JAQMKC01 1836 1900 1900 26 3 34 1 Streptococcus_mutans_homd_HMT_686 GCA_028326125.1 HMT-686 1001174st1_F4_RTP21191_200730 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1001174st1_F4_RTP21191_200730 22 1991487 36.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/125/GCA_028326125.1_ASM2832612v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA880610 1309 SAMN31322921 ASM2832612v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.757 USA Illumina HiSeq Icahn School of Medicine 18.6x 99.32 100 0.37 100 0.11 GCF_028326125.1 JAQMKD01 1873 1955 1955 30 3 48 1 Streptococcus_mutans_homd_HMT_686 GCA_028326145.1 HMT-686 1001174st1_D8_RTP21191_200730 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1001174st1_D8_RTP21191_200730 21 1990771 36.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/145/GCA_028326145.1_ASM2832614v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA880610 1309 SAMN31322920 ASM2832614v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.748 USA Illumina HiSeq Icahn School of Medicine 14.6x 99.31 100 0 100 0.11 GCF_028326145.1 JAQMKE01 1871 1953 1953 30 3 48 1 Streptococcus_mutans_homd_HMT_686 GCA_028326165.1 HMT-686 1001174st1_D5_RTP21191_200730 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans 1001174st1_D5_RTP21191_200730 28 2001244 36.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/165/GCA_028326165.1_ASM2832616v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA880610 1309 SAMN31322919 ASM2832616v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.726 USA Illumina HiSeq Icahn School of Medicine 18.8x 99.32 100 0 100 0.11 GCF_028326165.1 JAQMKF01 1886 1962 1962 30 3 42 1 Streptococcus_mutans_homd_HMT_686 GCA_028326405.1 HMT-542 H2_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius H2_m1001271B151109d1_201121 46 2029923 36.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/405/GCA_028326405.1_ASM2832640v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322836 ASM2832640v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.932 USA Illumina HiSeq Icahn School of Medicine 74.9x 99.15 100 0 100 0.05 GCF_028326405.1 JAQMMT01 1837 1923 1923 39 4 42 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326425.1 HMT-542 F12_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius F12_m1001271B151109d1_201121 46 2025859 36.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/425/GCA_028326425.1_ASM2832642v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322830 ASM2832642v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.874 USA Illumina HiSeq Icahn School of Medicine 81.7x 99.15 100 0 100 0.06 GCF_028326425.1 JAQMMZ01 1833 1893 1893 39 4 16 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326445.1 HMT-542 H10_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius H10_m1001271B151109d1_201121 43 2025954 36.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/445/GCA_028326445.1_ASM2832644v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322834 ASM2832644v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.911 USA Illumina HiSeq Icahn School of Medicine 110.4x 99.15 100 0 100 0.06 GCF_028326445.1 JAQMMV01 1835 1895 1895 39 4 16 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326465.1 HMT-542 H11_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius H11_m1001271B151109d1_201121 44 2027472 36.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/465/GCA_028326465.1_ASM2832646v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322835 ASM2832646v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.922 USA Illumina HiSeq Icahn School of Medicine 82.2x 99.15 100 0 100 0.06 GCF_028326465.1 JAQMMU01 1834 1920 1920 39 4 42 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326485.1 HMT-542 G4_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius G4_m1001271B151109d1_201121 45 2031286 36.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/485/GCA_028326485.1_ASM2832648v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322833 ASM2832648v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.900 USA Illumina HiSeq Icahn School of Medicine 83.0x 99.15 100 0 100 0.06 GCF_028326485.1 JAQMMW01 1836 1911 1911 39 4 31 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326495.1 HMT-542 G10_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius G10_m1001271B151109d1_201121 47 2033547 36.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/495/GCA_028326495.1_ASM2832649v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322832 ASM2832649v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.891 USA Illumina HiSeq Icahn School of Medicine 85.0x 99.15 100 0 100 0.07 GCF_028326495.1 JAQMMX01 1840 1927 1927 40 4 42 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326525.1 HMT-542 E6_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius E6_m1001271B151109d1_201121 46 2022280 36.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/525/GCA_028326525.1_ASM2832652v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322829 ASM2832652v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.865 USA Illumina HiSeq Icahn School of Medicine 56.4x 99.15 100 0 100 0.06 GCF_028326525.1 JAQMNA01 1829 1915 1915 39 4 42 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326545.1 HMT-542 G1_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius G1_m1001271B151109d1_201121 50 2035337 36.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/545/GCA_028326545.1_ASM2832654v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322831 ASM2832654v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.882 USA Illumina HiSeq Icahn School of Medicine 109.0x 99.15 100 0 100 0.05 GCF_028326545.1 JAQMMY01 1839 1924 1924 40 4 40 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326565.1 HMT-542 E11_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius E11_m1001271B151109d1_201121 47 2028115 36.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/565/GCA_028326565.1_ASM2832656v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322828 ASM2832656v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.857 USA Illumina HiSeq Icahn School of Medicine 65.3x 99.15 100 0 100 0.06 GCF_028326565.1 JAQMNB01 1831 1917 1917 39 4 42 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326585.1 HMT-542 D7_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius D7_m1001271B151109d1_201121 45 2023578 36.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/585/GCA_028326585.1_ASM2832658v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322827 ASM2832658v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.848 USA Illumina HiSeq Icahn School of Medicine 63.2x 99.15 100 0 100 0.06 GCF_028326585.1 JAQMNC01 1833 1893 1893 39 4 16 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326605.1 HMT-542 B5_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius B5_m1001271B151109d1_201121 47 2032015 36.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/605/GCA_028326605.1_ASM2832660v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322825 ASM2832660v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.831 USA Illumina HiSeq Icahn School of Medicine 109.8x 99.15 100 0 100 0.06 GCF_028326605.1 JAQMNE01 1840 1900 1900 39 4 16 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326625.1 HMT-542 B8_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius B8_m1001271B151109d1_201121 47 2028057 36.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/625/GCA_028326625.1_ASM2832662v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322826 ASM2832662v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.840 USA Illumina HiSeq Icahn School of Medicine 82.5x 99.15 100 0 100 0.06 GCF_028326625.1 JAQMND01 1835 1910 1910 39 4 31 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028326945.1 HMT-543 BSD2780120874st1_H7_BSD2780120874b_170522 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus BSD2780120874st1_H7_BSD2780120874b_170522 59 2202773 38.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/945/GCA_028326945.1_ASM2832694v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus whileyi PRJNA880610 1328 SAMN31322909 ASM2832694v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.637 USA Illumina HiSeq Icahn School of Medicine 47.6x 99.47 99.65 0.71 99.96 0.34 GCF_028326945.1 JAQMKO01 2189 2284 2284 48 3 43 1 Streptococcus_anginosus_homd_HMT_543 GCA_028327565.1 HMT-962 D59st1_B8_D59t2_181005 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-962 Hominimerdicola aceti D59st1_B8_D59t2_181005 29 3146046 42.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/327/565/GCA_028327565.1_ASM2832756v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola;s__Hominimerdicola aceti PRJNA880610 1160721 SAMN31322868 ASM2832756v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.266 USA Illumina HiSeq Icahn School of Medicine 28.6x 97.74 97.95 0 100 4.57 GCF_028327565.1 JAQMLS01 2952 3031 3031 24 3 51 1 Hominimerdicola_aceti_homd_HMT_962 GCA_028327595.1 HMT-962 D59st1_B5_D59t2_181005 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-962 Hominimerdicola aceti D59st1_B5_D59t2_181005 30 3097113 42.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/327/595/GCA_028327595.1_ASM2832759v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola;s__Hominimerdicola aceti PRJNA880610 1160721 SAMN31322867 ASM2832759v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:16.260 USA Illumina HiSeq Icahn School of Medicine 31.6x 97.74 97.95 0 100 3.96 GCF_028327595.1 JAQMLT01 2913 2992 2992 24 3 51 1 Hominimerdicola_aceti_homd_HMT_962 GCA_028327965.1 HMT-542 B1_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius B1_m1001271B151109d1_201121 47 2028953 36.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/327/965/GCA_028327965.1_ASM2832796v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322824 ASM2832796v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.822 USA Illumina HiSeq Icahn School of Medicine 108.0x 99.15 100 0 100 0.06 GCF_028327965.1 JAQMNF01 1833 1893 1893 39 4 16 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028327985.1 HMT-542 A1_m1001271B151109d1_201121 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius A1_m1001271B151109d1_201121 44 2029988 36.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/327/985/GCA_028327985.1_ASM2832798v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322823 ASM2832798v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.813 USA Illumina HiSeq Icahn School of Medicine 74.7x 99.15 100 0 100 0.05 GCF_028327985.1 JAQMNG01 1835 1922 1922 39 5 42 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028328025.1 HMT-542 J1101312st1_D9_J1101312_190322 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius J1101312st1_D9_J1101312_190322 76 2132440 35.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/328/025/GCA_028328025.1_ASM2832802v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322821 ASM2832802v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.796 USA Illumina HiSeq Icahn School of Medicine 42.2x 99.04 99.3 0.7 100 0.4 GCF_028328025.1 JAQMNI01 1874 1946 1946 46 4 21 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028328045.1 HMT-542 J1101312st1_B2_J1101312_190322 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius J1101312st1_B2_J1101312_190322 81 2130226 35.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/328/045/GCA_028328045.1_ASM2832804v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322820 ASM2832804v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.787 USA Illumina HiSeq Icahn School of Medicine 34.8x 99.03 99.3 0.7 100 0.37 GCF_028328045.1 JAQMNJ01 1865 1937 1937 46 4 21 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028328065.1 HMT-542 BSD2780120874st1_F9_BSD2780120874b_170522 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius BSD2780120874st1_F9_BSD2780120874b_170522 43 2077619 35.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/328/065/GCA_028328065.1_ASM2832806v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322819 ASM2832806v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.777 USA Illumina HiSeq Icahn School of Medicine 100.5x 99.12 100 0 100 0.01 GCF_028328065.1 JAQMNK01 1847 1932 1932 38 4 42 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028328105.1 HMT-542 J1101312st1_E8_J1101312_190322 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius J1101312st1_E8_J1101312_190322 79 2129957 35.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/328/105/GCA_028328105.1_ASM2832810v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA880610 1261 SAMN31322822 ASM2832810v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:27:15.805 USA Illumina HiSeq Icahn School of Medicine 30.2x 99.03 99.3 0.7 100 0.37 GCF_028328105.1 JAQMNH01 1871 1941 1941 44 4 21 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_028335085.1 HMT-619 HG1691old Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis HG1691old 1 2621167 47.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/335/085/GCA_028335085.1_ASM2833508v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA874424 837 SAMN30559731 ASM2833508v1 Complete Genome Unicycler v. v.0.5.0 2022-08-29T13:11:04.056 missing Illumina NextSeq;Oxford Nanopore MiniION University at Buffalo 375.0x 98.33 99.92 0.1 100 0.37 GCF_028335085.1 2258 2336 2336 12 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_028335105.1 HMT-619 A7436-C Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis A7436-C 1 2392749 48.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/335/105/GCA_028335105.1_ASM2833510v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA874424 837 SAMN30559730 ASM2833510v1 Complete Genome Unicycler v. v.0.5.0 2022-08-29T13:11:04.046 missing Illumina NextSeq;Oxford Nanopore MiniION University at Buffalo 423.0x 98.5 99.92 1.57 100 0.96 GCF_028335105.1 2053 2141 2141 22 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_028335125.1 HMT-619 ATCC 49417 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis ATCC 49417 1 2521435 48.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/335/125/GCA_028335125.1_ASM2833512v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA874424 837 SAMN30559733 ASM2833512v1 Complete Genome Unicycler v. v.0.5.0 2022-08-29T13:11:04.076 missing Illumina NextSeq;Oxford Nanopore MiniION University at Buffalo 314.0x 98.62 99.92 0.08 100 0.08 GCF_028335125.1 2159 2245 2245 19 12 54 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_028335325.1 HMT-880 R59-1 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-880 Enterococcus durans R59-1 2 3045882 37.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/335/325/GCA_028335325.1_ASM2833532v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B durans PRJNA783265 53345 SAMN23424508 ASM2833532v1 Complete Genome Unicycler v. 0.5.0 2021-11-24T10:48:04.873 not applicable fecal sample Illumina MiniSeq, Oxford Nanopore University of Zurich 98.64 99.25 0.75 100 0.35 GCF_028335325.1 2749 2906 2906 72 18 66 1 Enterococcus_durans_homd_HMT_880 GCA_028335645.1 HMT-880 R109-1 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-880 Enterococcus durans R109-1 2 3042529 37.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/335/645/GCA_028335645.1_ASM2833564v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B durans PRJNA783265 53345 SAMN23424509 ASM2833564v1 Complete Genome Unicycler v. 0.5.0 2021-11-24T10:48:04.886 not applicable fecal sample Illumina MiniSeq, Oxford Nanopore University of Zurich 98.64 99.25 0.75 100 0.35 GCF_028335645.1 2744 2902 2902 73 18 66 1 Enterococcus_durans_homd_HMT_880 GCA_028399565.1 HMT-969 1001283st1_H1_1001283B150304_161114 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-969 Bacteroides stercoris 1001283st1_H1_1001283B150304_161114 61 3928105 45.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/399/565/GCA_028399565.1_ASM2839956v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris PRJNA880610 46506 SAMN31320693 ASM2839956v1 Scaffold SPAdes v. 3.10.1 2022-10-17T16:24:12.955 USA Illumina HiSeq Icahn School of Medicine 32.5x 98.84 98.88 1.18 99.77 0.78 GCF_028399565.1 JAQNVY01 3245 3317 3317 18 3 51 0 Bacteroides_stercoris_homd_HMT_969 GCA_028411915.1 HMT-881 Egmn17 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-881 Lentilactobacillus buchneri Egmn17 1 2365130 44.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/411/915/GCA_028411915.1_ASM2841191v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri PRJNA887683 1581 SAMN31178892 ASM2841191v1 Chromosome SPAdes v. 3.15.2 2022-10-06T07:41:04.123 Turkey:Ankara cheese Illumina NovaSeq Baskent University 12.0x 99.46 97.44 0.16 93.35 0.36 2451 2558 2558 39 8 60 0 Lentilactobacillus_buchneri_homd_HMT_881 GCA_028462385.1 HMT-022 SCCH130 Lau2261318 Named Cultivated Oral (Abundance: High) HMT-022 Lautropia mirabilis SCCH130 Lau2261318 10 3080931 65.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/462/385/GCA_028462385.1_ASM2846238v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia mirabilis PRJNA561493 47671 SAMN31655766 ASM2846238v1 Contig CLC Genomics workbench v. 21 2022-11-08T07:40:05.693 Russia:Moscow oropharyngeal swab Illumina N.F.Gamaleya National Research Center for Epidemiology and Microbiology 96.0x 96 98.05 0 99.97 0.11 GCF_028462385.1 JAQOUA01 2499 2563 2563 12 4 47 1 Lautropia_mirabilis_homd_HMT_022 GCA_028464135.1 HMT-076 G1M1F Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri G1M1F 32 2541809 32.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/464/135/GCA_028464135.1_ASM2846413v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA929689 1292 SAMN32968848 ASM2846413v1 Contig SPAdes v. 3.12 1 2023-01-31T04:35:04.533 Bangladesh feces Illumina Bangabandhu Sheikh Mujibur Rahman Agricultural University 60.0x 99.65 99.73 0.06 100 0.22 GCF_028464135.1 JAQPCE01 2446 2532 2532 51 2 32 1 Staphylococcus_warneri_homd_HMT_076 GCA_028464905.1 HMT-331 T1 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis T1 13 2237686 37.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/464/905/GCA_028464905.1_ASM2846490v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJNA883828 29379 SAMN31005934 ASM2846490v1 Contig GS De Novo Assembler v. 0.10 2022-09-24T22:48:04.600 Nigeria: Lagos Deteriorating Pineapple Illumina NextSeq University of Lagos 49.1x 99.74 99.45 0 99.97 0.06 GCF_028464905.1 JAQPQT01 2174 2251 2251 39 4 33 1 Staphylococcus_auricularis_homd_HMT_331 GCA_028527665.1 HMT-060 SCPM-O-B-9665 (Don 6) Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum SCPM-O-B-9665 (Don 6) 30 2288602 55.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/527/665/GCA_028527665.1_ASM2852766v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA269675 37637 SAMN31031755 ASM2852766v1 Contig Unicycler v. 0.4.7 2022-09-27T07:13:03.817 Russia: Rostov-na-Donu throat swab MGISeq-2000 SRCAMB 275.7x 98.33 99.67 0.33 99.99 0.32 GCF_028527665.1 JAQPSI01 2055 2112 2112 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_028527685.1 HMT-060 SCPM-O-B-9664 (Don 5) Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum SCPM-O-B-9664 (Don 5) 30 2289230 55.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/527/685/GCA_028527685.1_ASM2852768v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA269675 37637 SAMN31031754 ASM2852768v1 Contig Unicycler v. 0.4.7 2022-09-27T07:13:03.810 Russia: Rostov-na-Donu throat swab MGISeq-2000 SRCAMB 187.5x 98.33 99.67 0.33 99.99 0.32 GCF_028527685.1 JAQPSJ01 2053 2110 2110 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_028527725.1 HMT-060 SCPM-O-B-9663 (Don 4) Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum SCPM-O-B-9663 (Don 4) 13 2338775 55.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/527/725/GCA_028527725.1_ASM2852772v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA269675 37637 SAMN31031753 ASM2852772v1 Contig Unicycler v. 0.4.7 2022-09-27T07:13:03.800 Russia: Rostov-na-Donu throat swab MGISeq-2000 SRCAMB 207.6x 95.53 99.67 0 100 0 GCF_028527725.1 JAQPSK01 2114 2171 2171 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_028527745.1 HMT-060 SCPM-O-B-9662 (Don 2) Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum SCPM-O-B-9662 (Don 2) 31 2336943 55.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/527/745/GCA_028527745.1_ASM2852774v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA269675 37637 SAMN31031752 ASM2852774v1 Contig Unicycler v. 0.4.7 2022-09-27T07:13:03.790 Russia: Rostov-na-Donu throat swab MGISeq-2000 SRCAMB 259.4x 98.33 99.67 0.33 99.99 0.48 GCF_028527745.1 JAQPSL01 2125 2182 2182 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_028527755.1 HMT-072 SCPM-O-B-9438 (R546) Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum SCPM-O-B-9438 (R546) 99 2801090 59.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/527/755/GCA_028527755.1_ASM2852775v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA269675 43770 SAMN31031751 ASM2852775v1 Contig Unicycler v. 0.4.7 2022-09-27T07:13:03.780 Russia: Rostov-na-Donu wound discharge MGISeq-2000 SRCAMB 208.6x 98.64 99.67 0.66 100 0.16 GCF_028527755.1 JAQPSM01 2564 2630 2630 7 3 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_028527805.1 HMT-060 SCPM-O-B-9433 (R11) Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum SCPM-O-B-9433 (R11) 18 2315239 55.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/527/805/GCA_028527805.1_ASM2852780v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA269675 37637 SAMN31031748 ASM2852780v1 Contig Unicycler v. 0.4.7 2022-09-27T07:13:03.753 Russia: Rostov-na-Donu nasal swab MGISeq-2000 SRCAMB 444.2x 98.36 99.67 0 100 0.05 GCF_028527805.1 JAQPSP01 2067 2124 2124 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_028527825.1 HMT-060 SCPM-O-B-9432 (R9) Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum SCPM-O-B-9432 (R9) 33 2270638 55.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/527/825/GCA_028527825.1_ASM2852782v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA269675 37637 SAMN31031747 ASM2852782v1 Contig Unicycler v. 0.4.7 2022-09-27T07:13:03.740 Russia: Rostov-na-Donu nasal swab MGISeq-2000 SRCAMB 385.5x 98.34 99.67 0.33 100 0.37 GCF_028527825.1 JAQPSQ01 2032 2088 2088 6 3 46 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_028527845.1 HMT-060 SCPM-O-B-9431 (R7) Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum SCPM-O-B-9431 (R7) 19 2314591 55.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/527/845/GCA_028527845.1_ASM2852784v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA269675 37637 SAMN31031746 ASM2852784v1 Contig Unicycler v. 0.4.7 2022-09-27T07:13:03.727 Russia: Rostov-na-Donu nasal swab MGISeq-2000 SRCAMB 525.3x 98.36 99.67 0 100 0.05 GCF_028527845.1 JAQPSR01 2064 2121 2121 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_028527885.1 HMT-030 SCPM-O-B-9437 (R12) Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-030 Corynebacterium afermentans SCPM-O-B-9437 (R12) 57 2335091 64.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/527/885/GCA_028527885.1_ASM2852788v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium afermentans PRJNA269675 38286 SAMN31031749 ASM2852788v1 Contig Unicycler v. 0.4.7 2022-09-27T07:13:03.760 Russia: Rostov-na-Donu nasal swab MGISeq-2000 SRCAMB 846.8x 97.75 97.32 0 99.98 0.14 GCF_028527885.1 JAQPSO01 2150 2220 2220 9 3 57 1 Corynebacterium_afermentans_homd_HMT_030 GCA_028583345.1 HMT-833 RSM43 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis RSM43 11 1887239 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/583/345/GCA_028583345.1_ASM2858334v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA875903 480 SAMN30631340 ASM2858334v1 Contig SPAdes v. 3.11.0 2022-09-01T12:28:05.400 USA: Madison, Wisconsin Illumina MiSeq University of Wisconsin-Madison 100.0x 99.19 99.45 0.27 100 0 GCF_028583345.1 JANYMK01 1731 1786 1786 7 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_028583365.1 HMT-833 MC14 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis MC14 12 1839813 41.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/583/365/GCA_028583365.1_ASM2858336v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA875903 480 SAMN30631339 ASM2858336v1 Contig SPAdes v. 3.11.0 2022-09-01T12:28:05.383 USA: Madison, Wisconsin Illumina MiSeq University of Wisconsin-Madison 230.0x 99.2 99.45 0.27 100 0 GCF_028583365.1 JANYML01 1670 1725 1725 7 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_028583385.1 HMT-833 RSM163 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis RSM163 6 1890202 41.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/583/385/GCA_028583385.1_ASM2858338v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJNA875903 480 SAMN30631341 ASM2858338v1 Contig SPAdes v. 3.11.0 2022-09-01T12:28:05.410 USA: Madison, Wisconsin Illumina MiSeq University of Wisconsin-Madison 90.0x 99.18 99.72 0.28 100 0 GCF_028583385.1 JANYMJ01 1715 1772 1772 9 3 44 1 Moraxella_catarrhalis_homd_HMT_833 GCA_028596105.1 HMT-216 LMJ Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-216 Acidovorax temperans LMJ 3 4730769 63.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/596/105/GCA_028596105.1_ASM2859610v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax;s__Acidovorax temperans PRJNA930884 80878 SAMN33025486 ASM2859610v1 Complete Genome HGAP v. 4.0; FLYE v. 2.9.1 2023-02-02T17:14:04.760 USA:Georgia Acidovorax temperans strain LMJ was isolated from a contaminated Tris Acetate Ph PacBio Sequel University of West Georgia 2535.7x 96.43 99.49 0 100 0.64 GCF_028596105.1 4411 4515 4515 38 12 53 1 Acidovorax_temperans_homd_HMT_216 GCA_028607005.1 HMT-051 LV1494_C165 Named Cultivated Vaginal (Abundance: Low) HMT-051 Limosilactobacillus vaginalis LV1494_C165 1 1837310 40.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/607/005/GCA_028607005.1_ASM2860700v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus vaginalis PRJNA930673 1633 SAMN33053617 ASM2860700v1 Complete Genome unicycler v. v0.4.8 2023-02-03T11:25:04.280 USA: Dallas, Texas Illumina; Oxford Nanopore MinION University of Texas at Dallas 1.0x 99.04 99.46 1.09 99.98 0.07 GCF_028607005.1 1757 1870 1870 36 15 61 1 Limosilactobacillus_vaginalis_homd_HMT_051 GCA_028609805.1 HMT-333 DSM 45435 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-333 Corynebacterium massiliense DSM 45435 1 2237865 64.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/609/805/GCA_028609805.1_ASM2860980v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium massiliense PRJNA532615 1121364 SAMN13404539 ASM2860980v1 Complete Genome Newbler v. 2.8; canu v. 1.6 2019-11-27T05:40:30.930 France: Marseille, Timone Hosp osteoarticular infection Illumina MiSeq; Oxford Nanopore MinION Uni Bielefeld 121.0x 99.99 97.53 0 99.98 0.04 GCF_028609805.1 1988 2060 2060 6 12 53 1 Corynebacterium_massiliense_homd_HMT_333 GCA_028609825.1 HMT-030 DSM 45751 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-030 Corynebacterium afermentans DSM 45751 1 2279521 64.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/609/825/GCA_028609825.1_ASM2860982v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium afermentans PRJNA454382 1232427 SAMN13404531 ASM2860982v1 Complete Genome Newbler v. 2.8; canu v. 1.6 2019-11-27T05:40:30.790 France: Timone Hospital, Marse feces Illumina MiSeq; Oxford Nanopore MinION Bielefeld University 83.8x 99.98 97.32 0 99.64 0.02 GCF_028609825.1 2128 2204 2204 8 12 55 1 Corynebacterium_afermentans_homd_HMT_030 GCA_028609885.1 HMT-047 DSM 7171 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium DSM 7171 1 2524840 61.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/609/885/GCA_028609885.1_ASM2860988v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium PRJNA532605 38289 SAMN13404533 ASM2860988v1 Complete Genome Newbler v. 2.8; canu v. 1.8 2019-11-27T05:40:30.826 missing blood culture Illumina MiSeq; Oxford Nanopore GridION Uni Bielefeld 103.1x 99.99 100 0.68 99.97 0.22 GCF_028609885.1 2212 2280 2280 6 9 52 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_028621975.1 HMT-200 FNV Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii FNV 1 2194806 27.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/621/975/GCA_028621975.1_ASM2862197v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA932162 851 SAMN33170584 ASM2862197v1 Complete Genome SMRT Link v. v5.1.0 2023-02-07T03:08:03.866 China: Shandong Oral PacBio Shandong University 100.0x 92.57 100 0 100 0.01 GCF_028621975.1 1982 2068 2068 23 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_028621995.1 HMT-464 FNU Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 FNU 1 2057857 27.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/621/995/GCA_028621995.1_ASM2862199v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA932162 851 SAMN33170998 ASM2862199v1 Complete Genome SMRT Link v. v5.1.0 2023-02-07T03:11:04.136 China: Shandong Oral PacBio Shandong University 100.0x 92.2 100 0 100 0.7 GCF_028621995.1 1915 1994 1994 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_028657925.1 HMT-420 FNA Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis FNA 1 2492833 27.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/657/925/GCA_028657925.1_ASM2865792v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA932162 851 SAMN33170517 ASM2865792v1 Complete Genome SMRT Link v. v5.1.0 2023-02-07T03:02:03.926 China: Shandong Oral PacBio Shandong University 100.0x 91.73 100 0 100 0.27 GCF_028657925.1 2321 2403 2403 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_028735995.1 HMT-202 FNP Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum FNP 1 2651846 26.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/735/995/GCA_028735995.1_ASM2873599v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA932162 851 SAMN33169818 ASM2873599v1 Complete Genome SMRT Link v. v5.1.0 2023-02-07T02:46:04.446 China: Shandong Oral PacBio Shandong University 100.0x 92.34 100 0 100 0.15 GCF_028735995.1 2528 2614 2614 23 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_028743415.1 HMT-420 2/1/50A Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis 2/1/50A 1 2448186 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/743/415/GCA_028743415.1_ASM2874341v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA933643 851 SAMN33244396 ASM2874341v1 Complete Genome Canu v. 1.8; Geneious v. 6.1.8 2023-02-10T14:57:03.517 USA Illumina HiSeq; Oxford Nanopore MinION Zymo Research Corporation 1.0x 91.78 100 0 100 0.15 GCF_028743415.1 2298 2380 2380 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_028743475.1 HMT-158 AC2811 AN NA 2 Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae AC2811 AN NA 2 1 2158040 38.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/743/475/GCA_028743475.1_ASM2874347v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJNA933648 423477 SAMN33244438 ASM2874347v1 Complete Genome Canu v. 1.8; Geneious v. 6.1.8 2023-02-10T15:11:03.630 USA Illumina HiSeq; Oxford Nanopore MinION Zymo Research Corporation 1.0x 96.35 100 0 99.99 0.14 GCF_028743475.1 1951 2033 2033 21 12 48 1 Veillonella_rogosae_homd_HMT_158 GCA_028767065.1 HMT-626 PGMMGM001 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 PGMMGM001 34 1876477 30.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/767/065/GCA_028767065.1_ASM2876706v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans PRJNA793378 1379 SAMN24534076 ASM2876706v1 Contig Unicycler v. OCT-2021 2021-12-31T05:09:04.363 India:Chandigarh eye Illumina MiSeq Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh 535.0x 97.51 98.37 0 99.96 0.33 GCF_028767065.1 JAJUOT01 1674 1751 1751 34 3 39 1 Gemella_haemolysans_HMT_434_626 GCA_028767065.1 HMT-626 PGMMGM001 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 PGMMGM001 34 1876477 30.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/767/065/GCA_028767065.1_ASM2876706v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans PRJNA793378 1379 SAMN24534076 ASM2876706v1 Contig Unicycler v. OCT-2021 2021-12-31T05:09:04.363 India:Chandigarh eye Illumina MiSeq Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh 535.0x 97.51 98.37 0 99.96 0.33 GCF_028767065.1 JAJUOT01 1674 1751 1751 34 3 39 1 Gemella_haemolysans_clade_626_homd_HMT_626 GCA_028861895.1 HMT-655 KGMB01548 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-655 Eubacterium limosum KGMB01548 34 4571659 47.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/861/895/GCA_028861895.1_ASM2886189v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__Eubacterium limosum PRJDB7416 1736 SAMN33099528 ASM2886189v1 Contig SPAdes v. 3.13.0 2023-02-06T01:39:06.053 South Korea: Seoul Illumina NovaSeq Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology 989.0x 98.25 99.3 0.7 100 2.42 GCF_028861895.1 JAQSVD01 4317 4485 4485 111 7 49 1 Eubacterium_limosum_homd_HMT_655 GCA_028993465.1 HMT-619 ATCC 49417 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis ATCC 49417 3 2521436 48.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/993/465/GCA_028993465.1_ASM2899346v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA874424 837 SAMN30559732 ASM2899346v1 Contig Unicycler v. v.0.5.0 2022-08-29T13:11:04.070 missing Illumina NextSeq; Oxford Nanopore MinION University at Buffalo 428.0x 98.62 99.92 0.08 100 0.08 GCF_028993465.1 JARFMC01 2156 2242 2242 19 12 54 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_028994155.1 HMT-614 G5.M11b Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-614 Lysinibacillus fusiformis G5.M11b 4 4845046 37.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/994/155/GCA_028994155.1_ASM2899415v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus;s__Lysinibacillus fusiformis PRJNA937233 28031 SAMN33393309 ASM2899415v1 Complete Genome Unicycler v. 0.4.8-beta 2023-02-21T12:02:04.853 Hong Kong: Telegraph Bay Shoe Illumina NovaSeq; Oxford Nanopore MinION The Independent Schools Foundation Academy 528.0x 97.31 99.34 0.33 100 0.35 GCF_028994155.1 4647 4891 4891 95 40 108 1 Lysinibacillus_fusiformis_homd_HMT_614 GCA_029011155.1 HMT-817 VSI04 Named Cultivated Vaginal (Abundance: High) HMT-817 Lactobacillus crispatus VSI04 1 2322225 37.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/011/155/GCA_029011155.1_ASM2901115v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus crispatus PRJNA934404 47770 SAMN33275431 ASM2901115v1 Complete Genome trycycler v. v0.4.1 2023-02-13T18:41:04.396 USA: Houston, TX Oxford Nanopore MinION Seattle University 336.3x 97.73 99.03 1.39 99.37 1.51 GCF_029011155.1 2307 2443 2443 47 15 73 1 Lactobacillus_crispatus_homd_HMT_817 GCA_029011475.1 HMT-817 VSI24 Named Cultivated Vaginal (Abundance: High) HMT-817 Lactobacillus crispatus VSI24 2 2269013 37.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/011/475/GCA_029011475.1_ASM2901147v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus crispatus PRJNA934404 47770 SAMN33275449 ASM2901147v1 Complete Genome trycycler v. v0.4.1 2023-02-13T18:41:04.630 USA: Houston, TX Oxford Nanopore MinION Seattle University 95.9x 97.56 99.03 0.09 99.94 0.33 GCF_029011475.1 2268 2396 2396 48 15 64 1 Lactobacillus_crispatus_homd_HMT_817 GCA_029011785.1 HMT-615 VSI07 Named Cultivated Vaginal (Abundance: High) HMT-615 Lactobacillus gasseri VSI07 2 1815045 35.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/011/785/GCA_029011785.1_ASM2901178v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus gasseri PRJNA934404 1596 SAMN33275434 ASM2901178v1 Complete Genome trycycler v. v0.4.1 2023-02-13T18:41:04.430 USA: Houston, TX Oxford Nanopore MinION Seattle University 289.0x 99.98 98.19 0 99.97 0.02 GCF_029011785.1 1691 1818 1818 34 18 74 1 Lactobacillus_gasseri_homd_HMT_615 GCA_029023765.1 HMT-312 DSM 20340 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-312 Aerococcus viridans DSM 20340 1 2204952 39.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/023/765/GCA_029023765.1_ASM2902376v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;s__Aerococcus viridans PRJNA936091 1377 SAMN33336520 ASM2902376v1 Complete Genome Flye v. v2.8.1-b1676 2023-02-17T09:21:03.480 Unknown Unknown PacBio + Illumina HiSeq Agroscope 302.0x 99.99 98.9 1.65 99.96 0.8 GCF_029023765.1 2009 2127 2127 37 22 57 2 Aerococcus_viridans_homd_HMT_312 GCA_029023825.1 HMT-802 DSM 20726 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-802 Enterococcus saccharolyticus DSM 20726 1 2622437 37.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/023/825/GCA_029023825.1_ASM2902382v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_F;s__Enterococcus_F saccharolyticus PRJNA936091 1814218 SAMN33336516 ASM2902382v1 Complete Genome Flye v. v2.8.1-b1676 2023-02-17T09:21:03.440 Unknown Straw bedding PacBio + Illumina HiSeq Agroscope 340.0x 99.99 99.34 0.66 100 0 GCF_029023825.1 2583 2724 2724 57 21 62 1 Enterococcus_saccharolyticus_homd_HMT_802 GCA_029023845.1 HMT-076 DSM 20316 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri DSM 20316 1 2428398 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/023/845/GCA_029023845.1_ASM2902384v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA936091 1292 SAMN33336510 ASM2902384v1 Complete Genome Flye v. v2.8.1-b1676 2023-02-17T09:21:03.320 USA human skin PacBio + Illumina HiSeq Agroscope 642.0x 99.99 99.73 0 100 0.09 GCF_029023845.1 2304 2433 2433 47 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_029023865.1 HMT-804 DSM 20481 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-804 Lactococcus lactis DSM 20481 3 2590459 35.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/023/865/GCA_029023865.1_ASM2902386v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis PRJNA936091 1358 SAMN33336512 ASM2902386v1 Complete Genome Flye v. v2.8.1-b1676 2023-02-17T09:21:03.386 Unknown Unknown PacBio + Illumina HiSeq Agroscope 288.0x 99.99 99.62 0.76 100 0.6 GCF_029023865.1 2581 2707 2707 43 19 63 1 Lactococcus_lactis_homd_HMT_804 GCA_029023945.1 HMT-120 DSM 20263 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus DSM 20263 3 2571027 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/023/945/GCA_029023945.1_ASM2902394v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA936091 1283 SAMN33336507 ASM2902394v1 Complete Genome Flye v. v2.8.1-b1676 2023-02-17T09:21:03.286 Unknown human skin PacBio + Illumina HiSeq Agroscope 686.0x 99.98 99.39 0 99.99 0.05 GCF_029023945.1 2428 2511 0 0 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_029024105.1 HMT-005 DSM 2403 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-005 Acinetobacter lwoffii DSM 2403 6 3463679 43.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/024/105/GCA_029024105.1_ASM2902410v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter lwoffii PRJNA936091 28090 SAMN33336513 ASM2902410v1 Complete Genome Flye v. v2.8.1-b1676 2023-02-17T09:21:03.400 Unknown Unknown PacBio + Illumina HiSeq Agroscope 298.0x 99.99 99.93 0.27 100 0.69 GCF_029024105.1 3286 3421 3421 26 21 87 1 Acinetobacter_lwoffii_homd_HMT_005 GCA_029026905.1 HMT-858 X13 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-858 Comamonas testosteroni X13 1 5894614 61.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/026/905/GCA_029026905.1_ASM2902690v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas testosteroni_F PRJNA794302 285 SAMN24624792 ASM2902690v1 Complete Genome ABySS v. 2.1.5 2022-01-05T05:35:03.587 China: Zhejiang aerobic granular sludge reactor PacBio RS; Illumina HiSeq Zhejiang University 170.0x 94.35 99.85 0.67 100 0.69 GCF_029026905.1 5346 5520 5520 41 24 108 1 Comamonas_testosteroni_homd_HMT_858 GCA_029027845.1 HMT-468 NCIB 3610 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-468 Bacillus subtilis NCIB 3610 2 4295123 43.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/027/845/GCA_029027845.1_ASM2902784v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis PRJNA817865 1423 SAMN26811691 ASM2902784v1 Complete Genome Unicycler v. MAY-2021 2022-03-20T04:00:20.163 China: Shenzhen soil Nanopore; Illumina PE150 Shenzhen University 998.0x 99.99 99.81 0.35 100 0.1 GCF_029027845.1 4313 4532 4532 100 30 89 0 Bacillus_subtilis_homd_HMT_468 GCA_029071925.1 HMT-686 CIM3001 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans CIM3001 16 1994169 36.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/071/925/GCA_029071925.1_ASM2907192v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA541201 1309 SAMN31887641 ASM2907192v1 Contig SOAPdenovo v. 2.04 2022-11-28T02:28:03.960 China: Beijing oral cavity Illumina Institute of Microbiology, Chinese Academy of Sciences 12.0x 99.09 100 0 100 0.1 GCF_029071925.1 JAPMUF01 1893 1980 1980 37 4 45 1 Streptococcus_mutans_homd_HMT_686 GCA_029223075.1 HMT-229 NCB002 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-229 Arthrospira platensis NCB002 5 6864973 44.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/223/075/GCA_029223075.1_ASM2922307v1 d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira;s__Limnospira platensis PRJNA796443 2909674 SAMN24858350 ASM2922307v1 Contig HGAP v. SEP-2021 2022-01-12T03:00:04.243 South Korea PacBio Sequel NCell 1071.0x 99.64 100 0.22 100 0.1 JARHUM01 6484 6946 6946 408 4 49 1 Arthrospira_platensis_homd_HMT_229 GCA_029223925.1 HMT-608 KUFM408 Named Cultivated Oral (Abundance: Scarce) HMT-608 Limosilactobacillus fermentum KUFM408 1 2077616 51.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/223/925/GCA_029223925.1_ASM2922392v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus fermentum PRJNA941153 1613 SAMN33591059 ASM2922392v1 Complete Genome Flye v. 2.9 2023-03-06T04:18:03.066 missing missing Oxford Nanopore MinION Korea University 65.0x 98.22 99.18 0.82 99.95 0.07 GCF_029223925.1 2040 2145 2145 30 15 59 1 Limosilactobacillus_fermentum_homd_HMT_608 GCA_029226345.1 HMT-846 c17Ua_112 Named Cultivated Vaginal (Abundance: High) HMT-846 Gardnerella piotii c17Ua_112 3 1509345 42.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/226/345/GCA_029226345.1_ASM2922634v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium piotii PRJNA548360 2914924 SAMN25554339 ASM2922634v1 Contig Unicycler v. 0.4.8 2022-02-01T10:37:03.570 Portugal: Porto urine Illumina NovaSeq UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto 50.0x 100 0 99.99 0.18 GCF_029226345.1 JAKNCU01 1155 1217 1217 13 3 45 1 Gardnerella_piotii_homd_HMT_846 GCA_029277405.1 HMT-857 37b4 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-857 Rhodobacter capsulatus 37b4 1 3912233 66.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/277/405/GCA_029277405.1_ASM2927740v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter;s__Rhodobacter capsulatus PRJNA933930 1061 SAMN33261865 ASM2927740v1 Complete Genome Unicycler (hybrid assembly) v. 0.5.0 2023-02-11T17:46:03.623 Germany Oxford Nanopore MinION; Illumina MiSeq University of British Columbia 199.0x 98.39 98.33 0.66 100 0.91 GCF_029277405.1 3744 3841 3841 27 12 57 1 Rhodobacter_capsulatus_homd_HMT_857 GCA_029338415.1 HMT-031 SB-1 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum SB-1 1 2474928 58.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/338/415/GCA_029338415.1_ASM2933841v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA943520 43765 SAMN33730773 ASM2933841v1 Complete Genome Flye v. 2.9 2023-03-12T20:37:03.680 South Korea skin Oxford Nanopore MinION; MGI COSMAX BTI 512.0x 99.99 100 0 100 0.07 GCF_029338415.1 2127 2212 2212 14 15 55 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_029338475.1 HMT-530 YM-1 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes YM-1 1 2494935 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/338/475/GCA_029338475.1_ASM2933847v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA943521 1747 SAMN33730774 ASM2933847v1 Complete Genome Flye assembler v. 2.9 2023-03-12T20:40:04.023 South Korea skin Oxford Nanopore MinION; MGI COSMAX BTI 654.0x 99.97 99.43 0.03 100 0.06 GCF_029338475.1 2303 2383 2383 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_029369765.1 HMT-972 AY11-1 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-972 Bacteroides xylanisolvens AY11-1 1 6530506 42.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/369/765/GCA_029369765.1_ASM2936976v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens PRJNA943352 371601 SAMN33717058 ASM2936976v1 Complete Genome SOAPdenovo v. DEC-2022 2023-03-11T02:20:04.473 China feces PacBio; Illumina Ocean University of China 100.0x 98.15 99.46 0.4 100 0.6 GCF_029369765.1 5255 5362 5362 20 15 71 1 Bacteroides_xylanisolvens_homd_HMT_972 GCA_029457595.1 HMT-601 32FSE06 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 32FSE06 1 2501976 32.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/457/595/GCA_029457595.1_ASM2945759v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711685 ASM2945759v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:05.183 Switzerland: Bern Forehead PacBio Sequel Inselspital, Bern University Hospital 299.0x 99.58 99.81 0 99.99 0.06 GCF_029457595.1 2289 2459 2459 90 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029623695.1 HMT-641 NRCH180079 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NRCH180079 1 1991786 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/623/695/GCA_029623695.1_ASM2962369v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_H PRJNA947565 727 SAMN33859267 ASM2962369v1 Complete Genome SPAdes v. 1 2023-03-22T11:25:03.583 Belgium sputum Illumina LHUB-ULB 1991790.0x 97.02 99.67 0 100 0.05 1976 2074 2074 37 9 51 1 Haemophilus_influenzae_homd_HMT_641 GCA_029623715.1 HMT-641 NRCH190002 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NRCH190002 1 1991363 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/623/715/GCA_029623715.1_ASM2962371v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_H PRJNA947565 727 SAMN33859269 ASM2962371v1 Complete Genome SPAdes v. 1 2023-03-22T11:25:03.613 Belgium sputum Illumina LHUB-ULB 1991330.0x 97.02 99.67 0 100 0.05 1978 2076 2076 37 9 51 1 Haemophilus_influenzae_homd_HMT_641 GCA_029623735.1 HMT-641 NRCH180136 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NRCH180136 1 1991359 38.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/623/735/GCA_029623735.1_ASM2962373v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_H PRJNA947565 727 SAMN33859268 ASM2962373v1 Complete Genome SPAdes v. 1 2023-03-22T11:25:03.603 Belgium sputum Illumina LHUB-ULB 1991320.0x 97.02 99.67 0 100 0.05 1974 2072 2072 37 9 51 1 Haemophilus_influenzae_homd_HMT_641 GCA_029691405.1 HMT-707 D7B5 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis D7B5 1 1970732 41.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/405/GCA_029691405.1_ASM2969140v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp029691405 PRJNA950535 3038077 SAMN34001254 ASM2969140v1 Complete Genome prokka v. 1.14.6 2023-03-30T22:06:04.316 Taiwan: Taoyuan City PacBio Sequel Ming Chuan University 678.0x 99.87 0.2 100 0.01 GCF_029691405.1 1802 1919 1919 42 12 62 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_029691405.1 HMT-707 D7B5 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis D7B5 1 1970732 41.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/405/GCA_029691405.1_ASM2969140v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp029691405 PRJNA950535 3038077 SAMN34001254 ASM2969140v1 Complete Genome prokka v. 1.14.6 2023-03-30T22:06:04.316 Taiwan: Taoyuan City PacBio Sequel Ming Chuan University 678.0x 99.87 0.2 100 0.01 GCF_029691405.1 1802 1919 1919 42 12 62 1 Streptococcus_oralis_HMT_071_398_707 GCA_029691705.1 HMT-601 32FSE02 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 32FSE02 3 2484214 32.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/705/GCA_029691705.1_ASM2969170v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711684 ASM2969170v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:05.173 Switzerland: Bern Forehead PacBio Sequel Inselspital, Bern University Hospital 141.0x 99.53 99.74 0 99.98 0.01 GCF_029691705.1 2285 2443 2443 81 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029691725.1 HMT-601 44DSE01 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 44DSE01 3 2528901 32.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/725/GCA_029691725.1_ASM2969172v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711691 ASM2969172v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:05.236 Switzerland: Bern Driveline PacBio Sequel Inselspital, Bern University Hospital 169.0x 99.34 99.67 0 99.99 0.09 GCF_029691725.1 2323 2403 0 0 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029691775.1 HMT-601 32FSE07 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 32FSE07 3 2563036 32.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/775/GCA_029691775.1_ASM2969177v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711686 ASM2969177v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:05.190 Switzerland: Bern Forehead PacBio Sequel Inselspital, Bern University Hospital 110.0x 99.43 99.73 0 99.88 0.86 GCF_029691775.1 2334 2499 2499 87 19 58 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029691795.1 HMT-601 47FSE01 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 47FSE01 3 2527411 32.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/795/GCA_029691795.1_ASM2969179v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711692 ASM2969179v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:05.246 Switzerland: Bern Forehead PacBio Sequel Inselspital, Bern University Hospital 441.0x 99.34 99.67 0 99.99 0.1 GCF_029691795.1 2322 2402 0 0 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029691815.1 HMT-601 1FSE05 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 1FSE05 2 2481384 32.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/815/GCA_029691815.1_ASM2969181v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711656 ASM2969181v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:04.900 Switzerland: Bern Forehead PacBio Sequel Inselspital, Bern University Hospital 376.0x 99.63 99.63 0.56 99.98 0.14 GCF_029691815.1 2249 2407 2407 78 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029691875.1 HMT-601 24FSE04 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 24FSE04 6 2542396 32.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/875/GCA_029691875.1_ASM2969187v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711672 ASM2969187v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:05.060 Switzerland: Bern Forehead PacBio Sequel Inselspital, Bern University Hospital 277.0x 99.5 99.81 0.06 99.98 0.05 GCF_029691875.1 2352 2518 2518 86 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029691895.1 HMT-601 24FSE01 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 24FSE01 5 2540654 32.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/895/GCA_029691895.1_ASM2969189v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711671 ASM2969189v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:05.050 Switzerland: Bern Forehead PacBio Sequel Inselspital, Bern University Hospital 380.0x 99.52 99.8 0.06 99.98 0.07 GCF_029691895.1 2371 2539 2539 89 18 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029691915.1 HMT-601 20DL Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 20DL 5 2607338 32.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/915/GCA_029691915.1_ASM2969191v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711666 ASM2969191v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:05.000 Switzerland: Bern Driveline PacBio Sequel Inselspital, Bern University Hospital 390.0x 99.34 99.67 0.05 99.99 0.06 GCF_029691915.1 2398 2566 2566 88 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029691935.1 HMT-601 1FSE01 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 1FSE01 2 2494103 32.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/935/GCA_029691935.1_ASM2969193v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711655 ASM2969193v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:04.890 Switzerland: Bern Forehead PacBio Sequel Inselspital, Bern University Hospital 169.0x 99.6 99.81 0.02 99.98 0.04 GCF_029691935.1 2292 2450 2450 78 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029691955.1 HMT-601 1FSE03 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 1FSE03 2 2525918 32.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/691/955/GCA_029691955.1_ASM2969195v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA943176 1282 SAMN33711654 ASM2969195v1 Complete Genome Flye v. 2.8.3 2023-03-10T09:22:04.876 Switzerland: Bern Forehead PacBio Sequel Inselspital, Bern University Hospital 418.0x 99.62 99.79 0.56 99.99 0.46 GCF_029691955.1 2285 2445 2445 80 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_029726355.1 HMT-568 DSM 115425 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-568 Lacticaseibacillus casei DSM 115425 1 3094327 47.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/726/355/GCA_029726355.1_ASM2972635v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus casei PRJNA945261 3035291 SAMN33777240 ASM2972635v1 Complete Genome flye v. 2.9; Newbler v. 2.8 2023-03-16T07:16:05.350 Croatia: Gaj corn silage Oxford Nanopore GridION; Illumina MiSeq Bielefeld University 807.3x 99.46 0.91 99.88 0.47 GCF_029726355.1 2798 2906 2906 33 15 59 1 Lacticaseibacillus_casei_homd_HMT_568 GCA_029748795.1 HMT-568 DSM 115424 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-568 Lacticaseibacillus casei DSM 115424 1 3134028 47.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/748/795/GCA_029748795.1_ASM2974879v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus casei PRJNA945260 3035291 SAMN33777239 ASM2974879v1 Complete Genome flye v. 2.9; Newbler v. 2.8 2023-03-16T07:08:04.543 Austria: Kapfenberg grass silage Oxford Nanopore GridION; Illumina MiSeq Bielefeld University 481.4x 99.95 99.46 1.45 99.89 0.67 GCF_029748795.1 2894 3005 3005 36 15 59 1 Lacticaseibacillus_casei_homd_HMT_568 GCA_029813755.1 HMT-894 10c7w1 Unnamed Cultivated Oral (Abundance: Medium) HMT-894 Ottowia sp. HMT-894 10c7w1 119 2784541 63.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/813/755/GCA_029813755.1_ASM2981375v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ottowia;s__Ottowia massiliensis PRJNA954147 3040346 SAMN34135125 ASM2981375v1 Contig SOAPdenovo v. 2.3 2023-04-11T00:54:02.973 China stomach Illumina shandong university at Weihai 568.0x 99 2.1 99.89 0.65 GCF_029813755.1 JARVII01 2412 2478 2478 13 3 49 1 Ottowia_sp_HMT_894_homd_HMT_894 GCA_029814875.1 HMT-740 GD04132 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-740 Pseudomonas oleovorans GD04132 1 4677167 62.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/814/875/GCA_029814875.1_ASM2981487v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E oleovorans PRJNA868296 301 SAMN30525588 ASM2981487v1 Complete Genome unicycler v. v0.4.9 2022-08-26T16:24:10.410 Pakistan Illumina HiSeq + Oxford Nanopore MiniION Washington University in St. Louis School of Medicine 76.5x 96.89 99.84 1.11 100 0.18 GCF_029814875.1 4435 4677 4677 163 12 66 1 Pseudomonas_oleovorans_homd_HMT_740 GCA_029823225.1 HMT-608 LMG 6902 Named Cultivated Oral (Abundance: Scarce) HMT-608 Limosilactobacillus fermentum LMG 6902 112 1817617 52.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/823/225/GCA_029823225.1_ASM2982322v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus fermentum PRJNA933129 1613 SAMN33225764 ASM2982322v1 Contig CLC Genomics Workbench v. 20.0.4 2023-02-09T10:45:08.687 not provided Illumina Chr-Hansen 71.0x 99.99 99.18 0 99.91 0.03 GCF_029823225.1 JARACC01 1770 1855 1855 25 3 57 0 Limosilactobacillus_fermentum_homd_HMT_608 GCA_029823545.1 HMT-756 LMG 9477 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-756 Ligilactobacillus salivarius LMG 9477 53 1995138 32.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/823/545/GCA_029823545.1_ASM2982354v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius PRJNA933129 1624 SAMN33225758 ASM2982354v1 Contig CLC Genomics Workbench v. 20.0.4 2023-02-09T10:45:08.617 not provided Illumina Chr-Hansen 77.0x 99.99 99.48 0 99.99 0.07 GCF_029823545.1 JARACG01 1924 2035 2035 37 8 65 1 Ligilactobacillus_salivarius_homd_HMT_756 GCA_029823575.1 HMT-615 DSM 20243 Named Cultivated Vaginal (Abundance: High) HMT-615 Lactobacillus gasseri DSM 20243 26 1825792 35.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/823/575/GCA_029823575.1_ASM2982357v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus gasseri PRJNA933129 324831 SAMN33225757 ASM2982357v1 Contig CLC Genomics Workbench v. 20.0.4 2023-02-09T10:45:08.603 not provided Illumina Chr-Hansen 77.0x 99.99 98.45 0 99.97 0 GCF_029823575.1 JAQZAQ01 1742 1832 1832 33 3 53 1 Lactobacillus_gasseri_homd_HMT_615 GCA_029838685.1 HMT-834 GD03976 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-834 Pseudomonas otitidis GD03976 73 6219932 66.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/838/685/GCA_029838685.1_ASM2983868v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas;s__Metapseudomonas otitidis PRJNA868296 319939 SAMN30525432 ASM2983868v1 Contig Unicycler v. 0.4.9 2022-08-26T16:24:08.946 Pakistan Illumina HiSeq Washington University in St. Louis School of Medicine 71.1x 97.97 99.35 0.76 100 1.2 GCF_029838685.1 JAOBZB01 5581 5730 5730 79 3 66 1 Pseudomonas_otitidis_homd_HMT_834 GCA_029843895.1 HMT-740 GD03704 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-740 Pseudomonas oleovorans GD03704 3 4684111 62.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/843/895/GCA_029843895.1_ASM2984389v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E oleovorans PRJNA868296 301 SAMN30525160 ASM2984389v1 Contig Unicycler v. 0.4.9 2022-08-26T16:24:06.413 Pakistan Illumina HiSeq; Oxford Nanopore MinION Washington University in St. Louis School of Medicine 30.3x 96.9 99.84 1.11 100 0.15 GCF_029843895.1 JAOCJE01 4443 4684 4684 163 12 65 1 Pseudomonas_oleovorans_homd_HMT_740 GCA_029846465.1 HMT-200 Fn11kaz Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii Fn11kaz 34 2134385 26.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/846/465/GCA_029846465.1_ASM2984646v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA954179 851 SAMN34136110 ASM2984646v1 Contig SPAdes v. v.3.1.0. 2023-04-11T03:52:04.737 Kazakhstan: Astana colon biopsy Illumina MiSeq National Center for Biotechnology 61.0x 92.42 100 0 100 0.2 JARWBA01 1980 2045 2045 19 2 43 1 Fusobacterium_vincentii_homd_HMT_200 GCA_029846575.1 HMT-208 24956 Named Cultivated Nasal (Abundance: Scarce) HMT-208 Corynebacterium bovis 24956 10 2586948 73.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/846/575/GCA_029846575.1_ASM2984657v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium bovis PRJNA953983 36808 SAMN34129807 ASM2984657v1 Contig SPAdes v. 3.13.0 2023-04-10T13:23:06.373 USA: Maine skin swab of homozygous nude mice Illumina MiSeq The Jackson Laboratory 713.0x 96.46 99.32 0 99.91 0 GCF_029846575.1 JARWBD01 2036 2112 2112 8 6 60 2 Corynebacterium_bovis_homd_HMT_208 GCA_029850825.1 HMT-188 RSM482 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria RSM482 60 2660360 56.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/850/825/GCA_029850825.1_ASM2985082v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA867425 172042 SAMN30201470 ASM2985082v1 Contig SPAdes v. 3.11.1 2022-08-08T21:32:04.510 USA: Madison, Wisconsin nasal lavage fluid Illumina NextSeq University of Wisconsin-Madison 143.3x 97.53 98.34 0 100 0.05 GCF_029850825.1 JAOVAK01 2344 2407 2407 13 3 46 1 Rothia_aeria_homd_HMT_188 GCA_029850855.1 HMT-587 RSM522 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa RSM522 36 2462448 53.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/850/855/GCA_029850855.1_ASM2985085v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA867425 2047 SAMN30201471 ASM2985085v1 Contig SPAdes v. 3.11.1 2022-08-08T21:32:04.520 USA: Madison, Wisconsin nasal lavage fluid Illumina NextSeq University of Wisconsin-Madison 149.1x 96.26 99.34 0 100 0.04 GCF_029850855.1 JAOVAJ01 2116 2181 2181 12 4 48 1 Rothia_dentocariosa_homd_HMT_587 GCA_029850905.1 HMT-587 RSM249 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa RSM249 57 2457731 53.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/850/905/GCA_029850905.1_ASM2985090v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA867425 2047 SAMN30201466 ASM2985090v1 Contig SPAdes v. 3.11.1 2022-08-08T21:32:04.467 USA: Madison, Wisconsin nasal lavage fluid Illumina NextSeq University of Wisconsin-Madison 163.5x 96.22 99.34 0 100 0.07 GCF_029850905.1 JAOVAO01 2098 2163 2163 12 4 48 1 Rothia_dentocariosa_homd_HMT_587 GCA_029850925.1 HMT-587 RSM82 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa RSM82 26 2414940 53.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/850/925/GCA_029850925.1_ASM2985092v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA867425 2047 SAMN30201464 ASM2985092v1 Contig SPAdes v. 3.11.1 2022-08-08T21:32:04.443 USA: Madison, Wisconsin nasal lavage fluid Illumina NextSeq University of Wisconsin-Madison 153.9x 96.24 99.34 0 100 0.04 GCF_029850925.1 JAOVAQ01 2053 2117 2117 12 4 47 1 Rothia_dentocariosa_homd_HMT_587 GCA_029850955.1 HMT-188 RSM89 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria RSM89 39 2558284 56.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/850/955/GCA_029850955.1_ASM2985095v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA867425 172042 SAMN30201465 ASM2985095v1 Contig SPAdes v. 3.11.1 2022-08-08T21:32:04.453 USA: Madison, Wisconsin nasal lavage fluid Illumina NextSeq University of Wisconsin-Madison 129.1x 97.37 98.34 0 100 0.06 GCF_029850955.1 JAOVAP01 2248 2312 2312 13 4 46 1 Rothia_aeria_homd_HMT_188 GCA_029851005.1 HMT-188 RSM15 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria RSM15 18 2572352 56.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/851/005/GCA_029851005.1_ASM2985100v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA867425 172042 SAMN30201460 ASM2985100v1 Contig SPAdes v. 3.11.1 2022-08-08T21:32:04.397 USA: Madison, Wisconsin nasal lavage fluid Illumina NextSeq University of Wisconsin-Madison 150.4x 99.51 98.34 0 100 0.07 GCF_029851005.1 JAOVAU01 2225 2291 2291 13 4 48 1 Rothia_aeria_homd_HMT_188 GCA_029851025.1 HMT-188 RSM41 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria RSM41 46 2640529 56.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/851/025/GCA_029851025.1_ASM2985102v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA867425 172042 SAMN30201462 ASM2985102v1 Contig SPAdes v. 3.11.1 2022-08-08T21:32:04.423 USA: Madison, Wisconsin nasal lavage fluid Illumina NextSeq University of Wisconsin-Madison 158.8x 97.51 98.34 0 100 0.03 GCF_029851025.1 JAOVAS01 2306 2369 2369 13 3 46 1 Rothia_aeria_homd_HMT_188 GCA_029851045.1 HMT-587 RSM16 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa RSM16 47 2489860 53.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/851/045/GCA_029851045.1_ASM2985104v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA867425 2047 SAMN30201461 ASM2985104v1 Contig SPAdes v. 3.11.1 2022-08-08T21:32:04.410 USA: Madison, Wisconsin nasal lavage fluid Illumina NextSeq University of Wisconsin-Madison 154.1x 96.52 99.34 0.66 100 1.04 GCF_029851045.1 JAOVAT01 2149 2214 2214 13 4 47 1 Rothia_dentocariosa_homd_HMT_587 GCA_029851525.1 HMT-530 CBS-BPNBT19153 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes CBS-BPNBT19153 1 2550536 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/851/525/GCA_029851525.1_ASM2985152v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA907754 1747 SAMN31994360 ASM2985152v1 Complete Genome Unicycler v. 0.5.0 2022-12-02T08:56:03.260 Canada Isolated from contaminated platelet concentrates Illumina MiSeq; Oxford Nanopore MinION Health Canada 525.7x 99.57 100 0 100 1.1 GCF_029851525.1 2352 2434 2434 24 9 48 1 Cutibacterium_acnes_homd_HMT_530 GCA_029851545.1 HMT-530 CBS-BPNBT19227 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes CBS-BPNBT19227 1 2594562 59.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/851/545/GCA_029851545.1_ASM2985154v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA907754 1747 SAMN31994359 ASM2985154v1 Complete Genome Unicycler v. 0.5.0 2022-12-02T08:56:03.250 Canada Isolated from contaminated platelet concentrates Illumina MiSeq; Oxford Nanopore MinION Health Canada 524.0x 99.81 100 0 99.99 0.48 2472 2553 2553 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_029851565.1 HMT-530 CBS-BPNBT19223 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes CBS-BPNBT19223 1 2578943 59.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/851/565/GCA_029851565.1_ASM2985156v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA907754 1747 SAMN31994358 ASM2985156v1 Complete Genome Unicycler v. 0.5.0 2022-12-02T08:56:03.240 Canada Isolated from contaminated platelet concentrates Illumina MiSeq; Oxford Nanopore MinION Health Canada 843.8x 99.82 100 0 99.99 0.04 2460 2541 2541 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_029851585.1 HMT-530 CBS-BPNBT19329 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes CBS-BPNBT19329 1 2492467 60.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/851/585/GCA_029851585.1_ASM2985158v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA907754 1747 SAMN31994357 ASM2985158v1 Complete Genome Unicycler v. 0.5.0 2022-12-02T08:56:03.230 Canada Isolated from contaminated platelet concentrates Illumina MiSeq; Oxford Nanopore MinION Health Canada 637.5x 99.71 100 0 99.99 0.07 GCF_029851585.1 2313 2392 2392 23 9 46 1 Cutibacterium_acnes_homd_HMT_530 GCA_029851605.1 HMT-530 CBS-BPNBT19195 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes CBS-BPNBT19195 1 2560088 60.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/851/605/GCA_029851605.1_ASM2985160v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA907754 1747 SAMN31994356 ASM2985160v1 Complete Genome Unicycler v. 0.5.0 2022-12-02T08:56:03.220 Canada Isolated from contaminated platelet concentrates Illumina MiSeq; Oxford Nanopore MinION Health Canada 379.9x 99.16 100 0 100 0.67 GCF_029851605.1 2369 2450 2450 23 9 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_029851625.1 HMT-530 CBS-BPNBT19269 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes CBS-BPNBT19269 1 2547251 60.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/851/625/GCA_029851625.1_ASM2985162v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA907754 1747 SAMN31994355 ASM2985162v1 Complete Genome Unicycler v. 0.5.0 2022-12-02T08:56:03.206 Canada Isolated from red blood cell concentrate associated with contaminated platelet c Illumina MiSeq; Oxford Nanopore MinION Health Canada 556.1x 99.67 99.34 0 99.99 0.28 GCF_029851625.1 2366 2446 2446 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_029866565.1 HMT-805 19LMF8280815 Named Cultivated Pathogen (Abundance: Scarce) HMT-805 Treponema pallidum 19LMF8280815 1 1139879 52.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/866/565/GCA_029866565.1_ASM2986656v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema pallidum PRJNA813757 168 SAMN26521568 ASM2986656v1 Complete Genome SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 2022-03-08T06:22:03.860 Tanzania: Lake Manyara Nationa skin Illumina HiSeq; Sanger Masaryk University 19.9x 99.8 99.97 0 98.36 0.01 GCF_029866565.1 972 1026 1026 2 6 45 1 Treponema_pallidum_homd_HMT_805 GCA_029866705.1 HMT-805 22LMF5290815 Named Cultivated Pathogen (Abundance: Scarce) HMT-805 Treponema pallidum 22LMF5290815 1 1140667 52.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/866/705/GCA_029866705.1_ASM2986670v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema pallidum PRJNA813758 168 SAMN26521572 ASM2986670v1 Complete Genome SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 2022-03-08T06:27:06.226 Tanzania: Lake Manyara Nationa skin Illumina MiSeq; Sanger Masaryk University 122.7x 99.8 99.17 0 98.17 0.01 GCF_029866705.1 969 1023 1023 2 6 45 1 Treponema_pallidum_homd_HMT_805 GCA_029866725.1 HMT-805 24SNM5151115 Named Cultivated Pathogen (Abundance: Scarce) HMT-805 Treponema pallidum 24SNM5151115 1 1140433 52.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/866/725/GCA_029866725.1_ASM2986672v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema pallidum PRJNA813760 168 SAMN26521574 ASM2986672v1 Complete Genome SPAdes v. 3.13.0; SeqMan Pro v. 7.1.0 2022-03-08T06:32:04.740 Tanzania: Serengeti National P skin Illumina MiSeq; Illumina HiSeq; Sanger Masaryk University 135.3x 99.8 99.97 0 98.25 0.01 GCF_029866725.1 976 1030 1030 2 6 45 1 Treponema_pallidum_homd_HMT_805 GCA_029872115.1 HMT-660 D-9 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-660 Aquamicrobium lusatiense D-9 3 4399299 62.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/872/115/GCA_029872115.1_ASM2987211v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium;s__Mesorhizobium lusatiense PRJNA957093 89772 SAMN34244584 ASM2987211v1 Contig Unicycler v. v0.4.8 2023-04-19T02:50:05.137 China:Panjin sediment Illumina NovaSeq; Oxford Nanopore dalian university of technology 610.0x 96.53 99.21 1.16 100 0.02 GCF_029872115.1 JARXND01 4161 4261 4261 43 6 50 1 Aquamicrobium_lusatiense_homd_HMT_660 GCA_029893715.1 HMT-921 LBL Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-921 Paenibacillus glucanolyticus LBL 52 6750056 48.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/893/715/GCA_029893715.1_ASM2989371v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus glucanolyticus PRJNA834311 2940563 SAMN28094758 ASM2989371v1 Contig SPAdes v. spades/3.15.2 2022-05-04T19:18:02.495 USA: Puerto Rico missing Illumina DOE Joint Genome Institute 222.0x 99.85 0.74 100 0.94 GCF_029893715.1 JARXYU01 6369 6520 6520 77 3 70 1 Paenibacillus_glucanolyticus_homd_HMT_921 GCA_029911295.1 HMT-619 Bg4 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis Bg4 11 2424801 48.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/911/295/GCA_029911295.1_ASM2991129v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA874424 837 SAMN30559729 ASM2991129v1 Contig Unicycler v. 0.5.0 2022-08-29T13:11:04.030 missing Illumina NextSeq; Oxford Nanopore MinION University at Buffalo 471.0x 98.31 99.92 1.26 100 1.58 GCF_029911295.1 JARYSV01 2068 2148 2148 14 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_029917045.1 HMT-120 SH1275 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SH1275 4 2619402 32.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/917/045/GCA_029917045.1_ASM2991704v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA961631 1283 SAMN34359870 ASM2991704v1 Complete Genome Hifiasm v. 0.13-r308; Canu v. 1.7 2023-04-25T07:37:05.083 China: Zhuhai secretion Illumina NovaSeq; PacBio Jinan University 158.9x 99.17 99.62 0 99.99 0.35 GCF_029917045.1 2466 2650 2650 101 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_029917065.1 HMT-120 SH9361 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus SH9361 3 2511057 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/917/065/GCA_029917065.1_ASM2991706v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA961632 1283 SAMN34359877 ASM2991706v1 Complete Genome Hifiasm v. 0.13-r308; Canu v. 1.7 2023-04-25T07:48:04.510 China: Zhuhai secretion Illumina NovaSeq; PacBio Jinan University 191.6x 99.1 99.62 0 99.99 0.08 GCF_029917065.1 2407 2582 2582 92 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_029917375.1 HMT-116 ADPXQ Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ADPXQ 38 2450491 32.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/917/375/GCA_029917375.1_ASM2991737v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818812 ASM2991737v1 Contig SPAdes v. 3.14.1 2022-11-21T14:51:10.370 USA Illumina NovaSeq NISC - NIH Intramural Sequencing Center 46.0x 98.84 99.81 0.42 100 0.09 GCF_029917375.1 JARDEN01 2321 2444 2444 49 11 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_029918385.1 HMT-116 ADPVN Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ADPVN 35 2493082 32.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/918/385/GCA_029918385.1_ASM2991838v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818759 ASM2991838v1 Contig SPAdes v. 3.14.1 2022-11-21T14:51:09.843 USA Illumina NovaSeq NISC - NIH Intramural Sequencing Center 52.0x 98.84 99.81 0.42 99.99 0.18 GCF_029918385.1 JARDCP01 2385 2508 2508 49 11 62 1 Staphylococcus_capitis_homd_HMT_116 GCA_029918605.1 HMT-076 ADPVB Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ADPVB 46 2434493 32.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/918/605/GCA_029918605.1_ASM2991860v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA46333 1292 SAMN31818747 ASM2991860v1 Contig SPAdes v. 3.14.1 2022-11-21T14:51:09.717 USA Illumina NovaSeq NISC - NIH Intramural Sequencing Center 48.0x 99.68 99.73 0 99.99 0.04 GCF_029918605.1 JARDCD01 2330 2451 2451 47 11 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_029918745.1 HMT-076 ADPUU Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ADPUU 39 2531323 32.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/918/745/GCA_029918745.1_ASM2991874v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA46333 1292 SAMN31818740 ASM2991874v1 Contig SPAdes v. 3.14.1 2022-11-21T14:51:09.567 USA Illumina NovaSeq NISC - NIH Intramural Sequencing Center 47.0x 99.63 99.73 0 100 0.05 GCF_029918745.1 JARDBW01 2449 2573 2573 52 9 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_029918815.1 HMT-076 ADPUS Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ADPUS 41 2434872 32.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/918/815/GCA_029918815.1_ASM2991881v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA46333 1292 SAMN31818738 ASM2991881v1 Contig SPAdes v. 3.14.1 2022-11-21T14:51:09.547 USA Illumina NovaSeq NISC - NIH Intramural Sequencing Center 50.0x 99.68 99.73 0 100 0.04 GCF_029918815.1 JARDBU01 2333 2452 2452 47 9 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_029924965.1 HMT-116 ACVHD Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVHD 20 2613967 32.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/924/965/GCA_029924965.1_ASM2992496v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818702 ASM2992496v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:09.180 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 89.0x 98.78 99.81 0.02 100 0.27 GCF_029924965.1 JAREHX01 2524 2645 2645 53 8 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_029924985.1 HMT-116 ACVHC Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVHC 26 2615174 32.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/924/985/GCA_029924985.1_ASM2992498v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818701 ASM2992498v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:09.170 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 85.0x 98.78 99.81 0.02 100 0.27 GCF_029924985.1 JAREHW01 2527 2649 2649 53 9 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_029925065.1 HMT-116 ACVGX Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVGX 29 2441468 32.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/925/065/GCA_029925065.1_ASM2992506v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818696 ASM2992506v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:09.123 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 84.0x 98.84 99.81 0.42 100 0.09 GCF_029925065.1 JAREHR01 2315 2431 2431 49 7 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_029925185.1 HMT-076 ACVGS Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ACVGS 21 2512920 32.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/925/185/GCA_029925185.1_ASM2992518v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA46333 1292 SAMN31818691 ASM2992518v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:09.076 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 85.0x 99.68 99.73 0 100 0.2 GCF_029925185.1 JAREHM01 2411 2528 2528 52 6 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_029925195.1 HMT-076 ACVGP Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ACVGP 24 2512058 32.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/925/195/GCA_029925195.1_ASM2992519v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA46333 1292 SAMN31818688 ASM2992519v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:09.046 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 81.0x 99.68 99.73 0 100 0.2 GCF_029925195.1 JAREHJ01 2411 2528 2528 52 6 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_029925625.1 HMT-116 ACVFB Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVFB 17 2479086 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/925/625/GCA_029925625.1_ASM2992562v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818648 ASM2992562v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:08.663 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 82.0x 98.9 99.81 0.36 99.99 0.41 GCF_029925625.1 JAREFV01 2346 2462 2462 49 8 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_029926435.1 HMT-116 ACVGQ Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVGQ 15 2445644 32.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/926/435/GCA_029926435.1_ASM2992643v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818689 ASM2992643v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:09.056 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 84.0x 98.84 99.81 0.42 100 0.09 GCF_029926435.1 JAREHK01 2321 2440 2440 49 8 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_029926445.1 HMT-116 ACVGO Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVGO 18 2444570 32.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/926/445/GCA_029926445.1_ASM2992644v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818687 ASM2992644v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:09.036 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 82.0x 98.85 99.81 0.42 100 0.09 GCF_029926445.1 JAREHI01 2320 2437 2437 49 8 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_029926485.1 HMT-116 ACVGN Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVGN 16 2445446 32.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/926/485/GCA_029926485.1_ASM2992648v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818686 ASM2992648v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:09.030 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 86.0x 98.84 99.81 0.42 100 0.09 GCF_029926485.1 JAREHH01 2322 2439 2439 49 8 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_029926535.1 HMT-076 ACVGF Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ACVGF 17 2512570 32.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/926/535/GCA_029926535.1_ASM2992653v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA46333 1292 SAMN31818678 ASM2992653v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:08.950 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 86.0x 99.68 99.73 0 100 0.2 GCF_029926535.1 JAREGZ01 2411 2527 2527 52 5 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_029926565.1 HMT-076 ACVGG Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ACVGG 19 2511885 32.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/926/565/GCA_029926565.1_ASM2992656v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA46333 1292 SAMN31818679 ASM2992656v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:08.956 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 85.0x 99.67 99.73 0 100 0.2 GCF_029926565.1 JAREHA01 2411 2527 2527 52 5 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_029926605.1 HMT-076 ACVGE Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ACVGE 22 2512009 32.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/926/605/GCA_029926605.1_ASM2992660v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA46333 1292 SAMN31818677 ASM2992660v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:08.940 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 82.0x 99.68 99.73 0 100 0.2 GCF_029926605.1 JAREGY01 2416 2530 2530 52 5 56 1 Staphylococcus_warneri_homd_HMT_076 GCA_029926805.1 HMT-116 ACVFA Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVFA 37 2547235 32.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/926/805/GCA_029926805.1_ASM2992680v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818647 ASM2992680v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:08.653 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 81.0x 98.95 99.81 0.1 100 1.2 GCF_029926805.1 JAREFU01 2414 2535 2535 53 8 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_029926865.1 HMT-127 ACVEJ Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis ACVEJ 28 2293612 31.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/926/865/GCA_029926865.1_ASM2992686v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA46333 1290 SAMN31818630 ASM2992686v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:08.486 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 87.0x 99.1 99.38 1.21 100 0.67 GCF_029926865.1 JAREFD01 2259 2379 2379 53 7 59 1 Staphylococcus_hominis_homd_HMT_127 GCA_029926905.1 HMT-127 ACVEI Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis ACVEI 29 2293973 31.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/926/905/GCA_029926905.1_ASM2992690v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA46333 1290 SAMN31818629 ASM2992690v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:08.473 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 85.0x 99.1 99.38 1.21 100 0.64 GCF_029926905.1 JAREFC01 2262 2385 2385 53 8 61 1 Staphylococcus_hominis_homd_HMT_127 GCA_029926915.1 HMT-127 ACVEH Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis ACVEH 27 2233274 31.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/926/915/GCA_029926915.1_ASM2992691v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA46333 1290 SAMN31818628 ASM2992691v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:08.463 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 86.0x 99.1 99.38 1.19 100 0.67 GCF_029926915.1 JAREFB01 2185 2306 2306 53 8 59 1 Staphylococcus_hominis_homd_HMT_127 GCA_029927345.1 HMT-116 ACVCL Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVCL 22 2431228 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/927/345/GCA_029927345.1_ASM2992734v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818580 ASM2992734v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:07.946 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 86.0x 99.91 99.81 0.24 99.99 0.44 GCF_029927345.1 JAREDF01 2375 2499 2499 56 10 57 1 Staphylococcus_capitis_homd_HMT_116 GCA_029927385.1 HMT-116 ACVCI Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVCI 14 2478672 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/927/385/GCA_029927385.1_ASM2992738v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818577 ASM2992738v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:07.916 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 85.0x 98.9 99.81 0.36 99.99 0.41 GCF_029927385.1 JAREDC01 2344 2460 2460 49 8 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_029927405.1 HMT-116 ACVCG Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVCG 17 2479516 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/927/405/GCA_029927405.1_ASM2992740v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818575 ASM2992740v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:07.893 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 83.0x 98.9 99.81 0.36 99.99 0.41 GCF_029927405.1 JAREDA01 2344 2460 2460 49 7 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_029927425.1 HMT-116 ACVCH Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVCH 16 2478771 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/927/425/GCA_029927425.1_ASM2992742v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818576 ASM2992742v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:07.903 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 82.0x 98.9 99.81 0.36 99.99 0.41 GCF_029927425.1 JAREDB01 2346 2462 2462 49 7 59 1 Staphylococcus_capitis_homd_HMT_116 GCA_029928745.1 HMT-567 ACVEO Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae ACVEO 22 2603025 33.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/928/745/GCA_029928745.1_ASM2992874v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA46333 29380 SAMN31818635 ASM2992874v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:08.536 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 81.0x 98.67 99.81 0 100 0.01 GCF_029928745.1 JAREFI01 2462 2594 2594 67 7 57 1 Staphylococcus_caprae_homd_HMT_567 GCA_029928775.1 HMT-116 ACVEN Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVEN 19 2431738 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/928/775/GCA_029928775.1_ASM2992877v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818634 ASM2992877v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:08.526 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 87.0x 99.91 99.81 0.24 99.99 0.44 GCF_029928775.1 JAREFH01 2376 2500 2500 56 10 57 1 Staphylococcus_capitis_homd_HMT_116 GCA_029928945.1 HMT-116 ACVCK Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVCK 23 2432285 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/928/945/GCA_029928945.1_ASM2992894v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818579 ASM2992894v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:07.936 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 87.0x 99.91 99.81 0.24 99.99 0.44 GCF_029928945.1 JAREDE01 2376 2500 2500 56 10 57 1 Staphylococcus_capitis_homd_HMT_116 GCA_029928965.1 HMT-116 ACVCJ Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVCJ 25 2431282 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/928/965/GCA_029928965.1_ASM2992896v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818578 ASM2992896v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:07.926 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 87.0x 99.91 99.81 0.24 99.99 0.44 GCF_029928965.1 JAREDD01 2374 2498 2498 56 10 57 1 Staphylococcus_capitis_homd_HMT_116 GCA_029928985.1 HMT-116 ACVCF Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis ACVCF 14 2478062 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/928/985/GCA_029928985.1_ASM2992898v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA46333 29388 SAMN31818574 ASM2992898v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:07.783 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 87.0x 98.9 99.81 0.36 99.99 0.41 GCF_029928985.1 JARECZ01 2346 2461 2461 49 7 58 1 Staphylococcus_capitis_homd_HMT_116 GCA_029929545.1 HMT-076 ACVGR Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ACVGR 31 2508211 32.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/929/545/GCA_029929545.1_ASM2992954v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA46333 1292 SAMN31818690 ASM2992954v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:09.066 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 82.0x 99.68 99.73 0 100 0.2 GCF_029929545.1 JAREHL01 2402 2519 2519 52 6 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_029929625.1 HMT-076 ACVCM Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri ACVCM 16 2511729 32.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/929/625/GCA_029929625.1_ASM2992962v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA46333 1292 SAMN31818581 ASM2992962v1 Contig SPAdes v. 3.13.0 2022-11-21T14:51:07.956 USA skin Illumina NovaSeq NISC - NIH Intramural Sequencing Center 85.0x 99.68 99.73 0 100 0.2 GCF_029929625.1 JAREDG01 2410 2527 2527 52 6 58 1 Staphylococcus_warneri_homd_HMT_076 GCA_029959705.1 HMT-037 PS02297 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-037 Stenotrophomonas nitritireducens PS02297 270 4171120 68.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/959/705/GCA_029959705.1_ASM2995970v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas nitritireducens PRJNA894476 2991423 SAMN31456474 ASM2995970v1 Contig SPAdes v. 3.15.3 2022-10-26T10:08:04.173 USA food processing facility Illumina MiSeq Penn State University 212.0x 99.47 0.76 100 0.22 GCF_029959705.1 JASCOS01 3675 3853 3853 111 4 62 1 Stenotrophomonas_nitritireducens_homd_HMT_037 GCA_029961705.1 HMT-010 Sample9_3 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-010 Acinetobacter radioresistens Sample9_3 2 3170212 41.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/961/705/GCA_029961705.1_ASM2996170v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens PRJNA949442 40216 SAMN34061983 ASM2996170v1 Complete Genome Flye v. 2.9.1 2023-04-03T22:21:05.147 Malaysia peat soil samples Oxford Nanopore MinION AIMST University 128.0x 99.3 96.35 0.05 93.68 2.88 3549 3662 3662 15 21 76 1 Acinetobacter_radioresistens_homd_HMT_010 GCA_029967835.1 HMT-565 V87_3 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-565 Enterobacter cancerogenus V87_3 35 4706154 55.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/967/835/GCA_029967835.1_ASM2996783v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter cancerogenus PRJNA965940 3044236 SAMN34510218 ASM2996783v1 Contig SPAdes v. 3.15.5 2023-05-02T06:08:04.286 South Korea: Wanju Lettuce Illumina NextSeq Max Rubner-Institut 104.0x 100 0.23 100 0.02 GCF_029967835.1 JASCAM01 4337 4559 4559 169 3 49 1 Enterobacter_cancerogenus_homd_HMT_565 GCA_029984535.1 HMT-748 bin-139 Named Cultivated Oral (Abundance: Medium) HMT-748 Campylobacter rectus bin-139 209 2104853 yes 45.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/984/535/GCA_029984535.1_ASM2998453v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A rectus PRJNA961122 203 SAMN34353465 ASM2998453v1 Contig SPAdes v. 3.14.1 2023-04-24T16:28:06.043 USA: California Anal Gland secretions Illumina NextSeq University of California, Davis 1.0x 96.21 92.11 2.85 91.19 0.46 JASBXE01 1910 1940 1940 5 0 24 1 Campylobacter_rectus_homd_HMT_748 GCA_029984765.1 HMT-031 bin-100 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum bin-100 110 2811939 yes 56.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/984/765/GCA_029984765.1_ASM2998476v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA961122 43765 SAMN34353468 ASM2998476v1 Contig SPAdes v. 3.14.1 2023-04-24T16:28:06.100 USA: California Anal Gland secretions Illumina NextSeq University of California, Davis 1.0x 96.08 97.02 0 99.24 0.22 JASBXH01 2410 2475 2475 18 0 46 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_029991895.1 HMT-098 CCUG 73409 Named Cultivated Nasal (Abundance: High) HMT-098 Moraxella nonliquefaciens CCUG 73409 44 2214555 42.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/991/895/GCA_029991895.1_ASM2999189v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella nonliquefaciens PRJNA305687 478 SAMN11370851 ASM2999189v1 Contig SPAdes v. 3.11.1 2019-04-09T06:37:04.040 Ireland: Dublin Corneal scraping Illumina HiSeq University of Gothenburg - CCUG 583.0x 98.07 96.85 0.41 100 0 GCF_029991895.1 SSCH01 2060 2117 2117 9 3 44 1 Moraxella_nonliquefaciens_homd_HMT_098 GCA_030008055.1 HMT-460 SHL-20230108WGSARO1-L360107582 Named NVP Cultivated Oral (Abundance: Low) HMT-460 Lachnoanaerobaculum gingivalis SHL-20230108WGSARO1-L360107582 1 3079059 36.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/008/055/GCA_030008055.1_ASM3000805v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum gingivalis PRJNA964711 2490855 SAMN34488910 ASM3000805v1 Complete Genome Dragonflye v. v1.0.14 2023-05-01T12:51:06.900 Canada: Toronto blood Oxford Nanopore GridION; Illumina MiniSeq Shared Hospital Laboratory 14.0x 98.02 99.37 0 98.07 0.12 GCF_030008055.1 2819 2903 0 23 10 50 1 Lachnoanaerobaculum_gingivalis_homd_HMT_460 GCA_030011735.1 HMT-678 G0016 Named Cultivated Oral (Abundance: Medium) HMT-678 Solobacterium moorei G0016 47 2119528 37.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/011/735/GCA_030011735.1_ASM3001173v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia;s__Bulleidia moorei PRJNA970483 102148 SAMN35004078 ASM3001173v1 Contig Unicycler v. 0.5.0; SPAdes v. 3.15.4 2023-05-08T23:21:04.213 Australia Illumina MiSeq La Trobe University 13.3x 97.79 100 0 97.18 0.29 GCF_030011735.1 JASCYK01 2047 2123 2123 30 3 42 1 Solobacterium_moorei_homd_HMT_678 GCA_030012845.1 HMT-601 7049 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 7049 6 2640687 31.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/012/845/GCA_030012845.1_ASM3001284v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA937407 1282 SAMN33407028 ASM3001284v1 Complete Genome Trycycler; minimap2; medaka v. v0.5.3; v2.20; v1.5.0 2023-02-22T02:18:03.907 Algeria: Msila Nose Oxford Nanopore GridION Universiteit Gent 149.0x 99.34 99.81 0.45 99.98 0.11 GCF_030012845.1 2440 2614 2614 94 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_030013945.1 HMT-601 7073 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 7073 1 2526144 32.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/013/945/GCA_030013945.1_ASM3001394v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA937407 1282 SAMN33407049 ASM3001394v1 Complete Genome Trycycler; minimap2; medaka v. v0.5.3; v2.20; v1.5.0 2023-02-22T02:18:04.127 Algeria: Ouargla Nose Oxford Nanopore GridION Universiteit Gent 221.0x 99.43 98.5 0.09 99.43 1.43 2555 2719 2719 84 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_030014025.1 HMT-127 7056 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis 7056 4 2251807 31.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/014/025/GCA_030014025.1_ASM3001402v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA937407 1290 SAMN33407035 ASM3001402v1 Complete Genome Trycycler; minimap2; medaka v. v0.5.3; v2.20; v1.5.0 2023-02-22T02:18:03.983 Algeria: Ouargla Nose Oxford Nanopore GridION Universiteit Gent 270.0x 99.04 99.38 0.85 99.59 0.1 2288 2433 2433 63 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_030014045.1 HMT-601 7055 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 7055 1 2526192 32.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/014/045/GCA_030014045.1_ASM3001404v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA937407 1282 SAMN33407034 ASM3001404v1 Complete Genome Trycycler; minimap2; medaka v. v0.5.3; v2.20; v1.5.0 2023-02-22T02:18:03.973 Algeria: Ouargla Nose Oxford Nanopore GridION Universiteit Gent 260.0x 99.41 98.71 0.09 96.26 2.07 2589 2752 2752 83 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_030014105.1 HMT-601 7052 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis 7052 1 2526290 32.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/014/105/GCA_030014105.1_ASM3001410v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA937407 1282 SAMN33407031 ASM3001410v1 Complete Genome Trycycler; minimap2; medaka v. v0.5.3; v2.20; v1.5.0 2023-02-22T02:18:03.940 Algeria: Ouargla Nose Oxford Nanopore GridION Universiteit Gent 203.0x 99.41 99.04 0.09 95.83 2.28 2616 2779 2779 83 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_030015085.1 HMT-098 CCUG 73410 Named Cultivated Nasal (Abundance: High) HMT-098 Moraxella nonliquefaciens CCUG 73410 36 2180020 42.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/015/085/GCA_030015085.1_ASM3001508v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella nonliquefaciens PRJNA305687 478 SAMN11370852 ASM3001508v1 Contig SPAdes v. 3.11.1 2019-04-09T06:44:04.253 Ireland: Dublin Corneal scraping Illumina HiSeq University of Gothenburg - CCUG 601.0x 98.07 96.85 0.41 100 0 GCF_030015085.1 SSCI01 2019 2076 2076 9 3 44 1 Moraxella_nonliquefaciens_homd_HMT_098 GCA_030027035.1 HMT-543 S6 5008-2 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus S6 5008-2 62 2001769 38.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/027/035/GCA_030027035.1_ASM3002703v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJNA684628 1328 SAMN34495011 ASM3002703v1 Contig Unicycler v. JUNE-2018 2023-05-01T16:16:06.053 USA: Durham, NC Illumina NextSeq University of Alabama in Huntsville 412.0x 95.32 99.88 0.12 100 0.12 GCF_030027035.1 JASENE01 2033 2113 2113 40 3 36 1 Streptococcus_anginosus_homd_HMT_543 GCA_030053195.1 HMT-709 BSLO1801 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-709 Limosilactobacillus oris BSLO1801 6 2064446 49.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/053/195/GCA_030053195.1_ASM3005319v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus oris_A PRJNA970663 1632 SAMN35006292 ASM3005319v1 Complete Genome SPAdes v. 3.1.0 2023-05-09T08:23:04.053 China: Sichuan province feces Illumina NovaSeq; Oxford Nanopore Sichuan Agricultural University 435.0x 96.23 99.45 0 99.93 0.51 GCF_030053195.1 2026 2134 2134 30 15 62 1 Limosilactobacillus_oris_homd_HMT_709 GCA_030053435.1 HMT-567 GBY4178 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae GBY4178 50 2544326 33.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/053/435/GCA_030053435.1_KVI_CoNS_GBY4178 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA972462 29380 SAMN35079182 KVI_CoNS_GBY4178 Scaffold SPAdes v. 2.6 2023-05-14T16:28:03.683 Israel milk Illumina MiSeq Kimron Veterinary Institute 50.0x 98.69 99.81 0.06 100 0.04 GCF_030053435.1 JASFZT01 2462 2627 2627 93 10 61 1 Staphylococcus_caprae_homd_HMT_567 GCA_030062785.1 HMT-756 S92 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-756 Ligilactobacillus salivarius S92 6 2276271 32.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/062/785/GCA_030062785.1_ASM3006278v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius PRJNA911709 1624 SAMN32188939 ASM3006278v1 Complete Genome flye v. v2.8.3; NextPolish v. v2 2022-12-13T11:10:04.866 China:Shanghai Illumina HiSeq; Oxford Nanopore MinION Yangzhou University 112.0x 97.63 99.48 0.26 99.98 0.12 GCF_030062785.1 2219 2361 2361 41 22 78 1 Ligilactobacillus_salivarius_homd_HMT_756 GCA_030122685.1 HMT-975 1 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-975 Phocaeicola dorei 1 2 5572610 41.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/122/685/GCA_030122685.1_ASM3012268v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei PRJNA960935 357276 SAMN34339632 ASM3012268v1 Complete Genome Flye v. 2.9 2023-04-24T05:06:05.127 Israel: Jerusalem Oxford Nanopore MinION The Hebrew University of Jerusalem 389.0x 99.13 93.36 1.32 90.84 3.8 6307 6471 6471 61 21 81 1 Phocaeicola_dorei_homd_HMT_975 GCA_030144345.1 HMT-619 LyEC01 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis LyEC01 1 2408275 48.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/144/345/GCA_030144345.1_ASM3014434v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA974917 837 SAMN35301467 ASM3014434v1 Complete Genome SOAPdenovo v. JAN-2023 2023-05-21T23:58:03.563 China: Luoyang tissue from esophageal cancer patient Illumina NovaSeq; PacBio Sequel Henan University of Science and Technology Affiliated First Hospital 71.0x 98.42 99.92 0 99.99 0.04 GCF_030144345.1 2024 2098 2098 11 11 51 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_030144815.1 HMT-718 EL1 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae EL1 1 2153240 39.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/144/815/GCA_030144815.1_ASM3014481v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA954350 729 SAMN34140652 ASM3014481v1 Complete Genome Unicycler v. July-2021 2023-04-11T12:07:04.030 USA: Rhode Island Illumina NextSeq and Oxford Nanopore MinION University of Rhode Island 555.0x 96.85 99.89 0.34 100 1.6 GCF_030144815.1 2008 2113 2113 27 19 58 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_030148125.1 HMT-209 BWSM_57 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus BWSM_57 221 3561601 66.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/148/125/GCA_030148125.1_ASM3014812v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA963066 164759 SAMN34434874 ASM3014812v1 Contig MEGAHIT v. v1.2.9 2023-04-29T01:01:09.083 China:Wuxi ballast tank Illumina HiSeq Shandong university 97.01 3.37 95.95 1.78 GCF_030148125.1 JASBUB01 3318 3386 3386 24 1 42 1 Acidovorax_ebreus_homd_HMT_209 GCA_030166435.1 HMT-834 TL17 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-834 Pseudomonas otitidis TL17 1 6062106 67.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/166/435/GCA_030166435.1_ASM3016643v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas;s__Metapseudomonas otitidis PRJNA974950 319939 SAMN35302191 ASM3016643v1 Complete Genome canu v. 1.5 2023-05-22T03:57:03.260 China:Jinan water Oxford Nanopore; BGI Shandong First Medical University 759.0x 98.2 99.68 0.79 99.99 0.05 GCF_030166435.1 5464 5634 5634 83 12 74 1 Pseudomonas_otitidis_homd_HMT_834 GCA_030166615.1 HMT-530 W80 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes W80 1 2560578 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/166/615/GCA_030166615.1_ASM3016661v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA977060 1747 SAMN35448566 ASM3016661v1 Complete Genome B-assembler v. December 2022 2023-05-28T13:24:04.340 USA: Salt Lake City Illumina NovaSeq, Oxford Nanopore GridION University of Utah School of Medicine 91.0x 99.15 100 0 100 0.14 GCF_030166615.1 2362 2445 2445 23 11 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_030166635.1 HMT-530 W81 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes W81 1 2560819 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/166/635/GCA_030166635.1_ASM3016663v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJNA977060 1747 SAMN35448567 ASM3016663v1 Complete Genome B-assembler v. December 2022 2023-05-28T13:24:04.356 USA: Salt Lake City Illumina NovaSeq, Oxford Nanopore GridION University of Utah School of Medicine 103.0x 99.15 100 0 100 0.13 GCF_030166635.1 2363 2443 2443 23 8 47 2 Cutibacterium_acnes_homd_HMT_530 GCA_030175855.1 HMT-060 KPL4066 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL4066 23 2321312 55.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/175/855/GCA_030175855.1_ASM3017585v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023430 ASM3017585v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:18.023 USA Illumina NovaSeq Baylor College of Medicine 94.0x 95.49 99.67 0 100 0.02 GCF_030175855.1 JASNTX01 2094 2152 2152 6 4 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030175865.1 HMT-059 KPL4040 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL4040 48 2535081 56.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/175/865/GCA_030175865.1_ASM3017586v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023427 ASM3017586v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.986 USA Illumina NovaSeq Baylor College of Medicine 92.0x 97.73 99.22 0 100 0.08 GCF_030175865.1 JASNUA01 2328 2387 2387 7 3 48 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030175915.1 HMT-019 KPL4065 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL4065 43 2476050 59.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/175/915/GCA_030175915.1_ASM3017591v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023429 ASM3017591v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:18.010 USA Illumina NovaSeq Baylor College of Medicine 96.0x 97.01 99.78 0.15 99.99 0.05 GCF_030175915.1 JASNTZ01 2279 2346 2346 7 3 55 2 Corynebacterium_accolens_homd_HMT_019 GCA_030175955.1 HMT-019 KPL3674 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL3674 24 2458679 59.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/175/955/GCA_030175955.1_ASM3017595v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023406 ASM3017595v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.710 USA Illumina NovaSeq Baylor College of Medicine 95.0x 96.71 99.78 0 100 0.03 GCF_030175955.1 JASNUV01 2254 2315 2315 7 3 50 1 Corynebacterium_accolens_homd_HMT_019 GCA_030175965.1 HMT-019 KPL3647 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL3647 28 2490467 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/175/965/GCA_030175965.1_ASM3017596v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023403 ASM3017596v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.673 USA Illumina NovaSeq Baylor College of Medicine 110.0x 97.1 100 0 99.96 1.1 GCF_030175965.1 JASNUZ01 2306 2371 2371 8 3 53 1 Corynebacterium_accolens_homd_HMT_019 GCA_030175975.1 HMT-059 KPL3675 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL3675 41 2512839 56.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/175/975/GCA_030175975.1_ASM3017597v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023407 ASM3017597v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.723 USA Illumina NovaSeq Baylor College of Medicine 95.0x 97.43 99.22 0 99.99 0.07 GCF_030175975.1 JASNUU01 2289 2347 2347 7 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176015.1 HMT-019 KPL2660 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL2660 46 2518536 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/015/GCA_030176015.1_ASM3017601v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023388 ASM3017601v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.486 USA Illumina NovaSeq Baylor College of Medicine 91.0x 97.07 99.78 0 100 0.05 GCF_030176015.1 JASNVM01 2310 2373 2373 7 3 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176025.1 HMT-059 KPL2811 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL2811 51 2543444 56.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/025/GCA_030176025.1_ASM3017602v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023397 ASM3017602v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.606 USA Illumina NovaSeq Baylor College of Medicine 96.0x 97.41 99.33 0.15 99.88 0.07 GCF_030176025.1 JASNVK01 2315 2374 2374 7 3 48 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176055.1 HMT-059 KPL2785 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL2785 51 2462070 56.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/055/GCA_030176055.1_ASM3017605v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023394 ASM3017605v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.570 USA Illumina NovaSeq Baylor College of Medicine 96.0x 97.58 99.22 0 99.99 0.06 GCF_030176055.1 JASNVJ01 2210 2268 2268 7 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176075.1 HMT-059 KPL3672 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL3672 35 2443153 56.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/075/GCA_030176075.1_ASM3017607v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023405 ASM3017607v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.696 USA Illumina NovaSeq Baylor College of Medicine 95.0x 98.42 99.78 0 99.99 0.12 GCF_030176075.1 JASNUW01 2195 2253 2253 7 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176095.1 HMT-060 KPL2915 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL2915 40 2303459 55.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/095/GCA_030176095.1_ASM3017609v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023402 ASM3017609v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.663 USA Illumina NovaSeq Baylor College of Medicine 88.0x 98.43 99.67 0 100 0.02 GCF_030176095.1 JASNVA01 2077 2134 2134 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176115.1 HMT-060 KPL2795 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL2795 23 2277387 55.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/115/GCA_030176115.1_ASM3017611v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023395 ASM3017611v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.580 USA Illumina NovaSeq Baylor College of Medicine 92.0x 98.42 99.67 0.33 100 0.29 GCF_030176115.1 JASNVI01 2045 2106 2106 6 4 50 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176135.1 HMT-060 KPL2865 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL2865 29 2292906 55.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/135/GCA_030176135.1_ASM3017613v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023401 ASM3017613v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.650 USA Illumina NovaSeq Baylor College of Medicine 94.0x 98.34 99.67 0.11 100 0.43 GCF_030176135.1 JASNVB01 2059 2117 2117 6 4 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176155.1 HMT-060 KPL2640 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL2640 31 2386815 55.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/155/GCA_030176155.1_ASM3017615v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023383 ASM3017615v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.413 USA Illumina NovaSeq Baylor College of Medicine 97.0x 98.41 99.67 0 100 0 GCF_030176155.1 JASNVS01 2233 2290 2290 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176175.1 HMT-019 KPL2859 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL2859 38 2423448 59.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/175/GCA_030176175.1_ASM3017617v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023400 ASM3017617v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.640 USA Illumina NovaSeq Baylor College of Medicine 98.0x 96.95 99.78 0.66 99.99 0.03 GCF_030176175.1 JASNVC01 2227 2289 2289 7 3 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176195.1 HMT-059 KPL2804 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL2804 39 2486847 56.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/195/GCA_030176195.1_ASM3017619v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023396 ASM3017619v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.593 USA Illumina NovaSeq Baylor College of Medicine 95.0x 97.19 99.67 0 99.98 0.21 GCF_030176195.1 JASNVG01 2234 2293 2293 7 4 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176215.1 HMT-060 KPL2834 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL2834 30 2347199 55.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/215/GCA_030176215.1_ASM3017621v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023399 ASM3017621v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.626 USA Illumina NovaSeq Baylor College of Medicine 95.0x 98.27 99.67 0.33 99.99 0.33 GCF_030176215.1 JASNVD01 2118 2176 2176 6 3 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176235.1 HMT-060 KPL3772 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL3772 42 2361786 55.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/235/GCA_030176235.1_ASM3017623v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023411 ASM3017623v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.776 USA Illumina NovaSeq Baylor College of Medicine 93.0x 98.28 99.67 0.11 100 0.34 GCF_030176235.1 JASNUQ01 2132 2190 2190 6 4 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176255.1 HMT-019 KPL4075 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL4075 28 2476830 59.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/255/GCA_030176255.1_ASM3017625v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023431 ASM3017625v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:18.036 USA Illumina NovaSeq Baylor College of Medicine 95.0x 97.02 99.78 0 99.99 0.04 GCF_030176255.1 JASNTW01 2286 2349 2349 7 3 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176275.1 HMT-060 KPL4041 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL4041 24 2333586 55.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/275/GCA_030176275.1_ASM3017627v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023428 ASM3017627v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:18.000 USA Illumina NovaSeq Baylor College of Medicine 87.0x 98.28 99.67 0.33 99.99 0.76 GCF_030176275.1 JASNTY01 2102 2160 2160 6 3 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176295.1 HMT-060 KPL4025 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL4025 19 2257563 55.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/295/GCA_030176295.1_ASM3017629v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023425 ASM3017629v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.956 USA Illumina NovaSeq Baylor College of Medicine 91.0x 98.42 99.67 0.33 100 0.24 GCF_030176295.1 JASNUB01 2009 2066 2066 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176315.1 HMT-059 KPL3967 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL3967 45 2510206 56.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/315/GCA_030176315.1_ASM3017631v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023422 ASM3017631v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.916 USA Illumina NovaSeq Baylor College of Medicine 98.0x 97.57 99.67 0 99.99 0.06 GCF_030176315.1 JASNUH01 2273 2331 2331 7 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176335.1 HMT-019 KPL3926 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL3926 48 2538983 59.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/335/GCA_030176335.1_ASM3017633v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023419 ASM3017633v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.880 USA Illumina NovaSeq Baylor College of Medicine 92.0x 96.91 99.78 0 99.99 0.26 GCF_030176335.1 JASNUI01 2379 2440 2440 7 3 50 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176355.1 HMT-060 KPL3833 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL3833 37 2285471 55.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/355/GCA_030176355.1_ASM3017635v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023416 ASM3017635v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.846 USA Illumina NovaSeq Baylor College of Medicine 97.0x 98.44 99.67 0 100 0.01 GCF_030176355.1 JASNUL01 2073 2130 2130 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176375.1 HMT-019 KPL3921 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL3921 33 2437262 59.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/375/GCA_030176375.1_ASM3017637v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023418 ASM3017637v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.870 USA Illumina NovaSeq Baylor College of Medicine 93.0x 96.9 99.56 0 100 0.04 GCF_030176375.1 JASNUJ01 2271 2332 2332 7 3 50 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176395.1 HMT-060 KPL3966 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL3966 17 2388561 55.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/395/GCA_030176395.1_ASM3017639v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023421 ASM3017639v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.906 USA Illumina NovaSeq Baylor College of Medicine 91.0x 98.34 99.67 0.33 100 0.33 GCF_030176395.1 JASNUF01 2190 2248 2248 6 4 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176415.1 HMT-059 KPL3953 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL3953 30 2507113 56.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/415/GCA_030176415.1_ASM3017641v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023420 ASM3017641v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.893 USA Illumina NovaSeq Baylor College of Medicine 92.0x 97.42 99.78 0.44 99.94 0.05 GCF_030176415.1 JASNUG01 2272 2329 2329 6 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176435.1 HMT-059 KPL3889 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL3889 36 2540168 56.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/435/GCA_030176435.1_ASM3017643v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023417 ASM3017643v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.856 USA Illumina NovaSeq Baylor College of Medicine 93.0x 97.47 99.33 0 99.95 0.06 GCF_030176435.1 JASNUK01 2317 2374 2374 6 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176455.1 HMT-019 KPL3970 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL3970 37 2484787 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/455/GCA_030176455.1_ASM3017645v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023423 ASM3017645v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.930 USA Illumina NovaSeq Baylor College of Medicine 95.0x 97.04 99.78 0 99.97 0.04 GCF_030176455.1 JASNUE01 2288 2351 2351 7 3 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176475.1 HMT-019 KPL3703 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL3703 64 2450873 59.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/475/GCA_030176475.1_ASM3017647v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023409 ASM3017647v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.750 USA Illumina NovaSeq Baylor College of Medicine 95.0x 96.92 99.78 0 99.99 0.06 GCF_030176475.1 JASNUS01 2250 2315 2315 7 3 54 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176495.1 HMT-077 KPL3807 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum KPL3807 42 2323810 59.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/495/GCA_030176495.1_ASM3017649v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_D PRJNA842433 38304 SAMN35023414 ASM3017649v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.816 USA Illumina NovaSeq Baylor College of Medicine 89.0x 95.07 99.6 0.44 99.99 0.06 GCF_030176495.1 JASNUN01 2204 2273 2273 9 7 52 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_030176515.1 HMT-019 KPL3802 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL3802 34 2583058 59.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/515/GCA_030176515.1_ASM3017651v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023413 ASM3017651v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.803 USA Illumina NovaSeq Baylor College of Medicine 89.0x 97.12 99.78 0 99.99 1.36 GCF_030176515.1 JASNUO01 2401 2466 2466 7 4 53 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176535.1 HMT-060 KPL3702 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL3702 24 2278091 55.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/535/GCA_030176535.1_ASM3017653v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023408 ASM3017653v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.733 USA Illumina NovaSeq Baylor College of Medicine 90.0x 98.38 99.67 0.11 100 0.41 GCF_030176535.1 JASNUT01 2055 2113 2113 6 4 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176555.1 HMT-019 KPL3774 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL3774 30 2490377 59.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/555/GCA_030176555.1_ASM3017655v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023412 ASM3017655v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.790 USA Illumina NovaSeq Baylor College of Medicine 90.0x 97.03 99.78 0 99.99 0.04 GCF_030176555.1 JASNUP01 2298 2360 2360 7 3 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176575.1 HMT-019 KPL3832 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL3832 37 2377419 59.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/575/GCA_030176575.1_ASM3017657v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023415 ASM3017657v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.826 USA Illumina NovaSeq Baylor College of Medicine 92.0x 96.88 99.78 0 99.99 0.03 GCF_030176575.1 JASNUM01 2190 2255 2255 7 4 53 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176595.1 HMT-060 KPL3770 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL3770 34 2277291 55.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/595/GCA_030176595.1_ASM3017659v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023410 ASM3017659v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.763 USA Illumina NovaSeq Baylor College of Medicine 90.0x 98.44 99.67 0.33 100 0.24 GCF_030176595.1 JASNUR01 2044 2101 2101 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176615.1 HMT-060 KPL3671 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL3671 29 2264130 55.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/615/GCA_030176615.1_ASM3017661v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023404 ASM3017661v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.686 USA Illumina NovaSeq Baylor College of Medicine 93.0x 98.4 99.67 0 99.99 0 GCF_030176615.1 JASNUY01 2040 2097 2097 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176635.1 HMT-060 KPL2667 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL2667 24 2294966 55.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/635/GCA_030176635.1_ASM3017663v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023389 ASM3017663v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.500 USA Illumina NovaSeq Baylor College of Medicine 93.0x 95.76 99.67 0 100 0 GCF_030176635.1 JASNVL01 2063 2121 2121 6 4 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176655.1 HMT-060 KPL4010 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL4010 31 2281882 55.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/655/GCA_030176655.1_ASM3017665v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023424 ASM3017665v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.943 USA Illumina NovaSeq Baylor College of Medicine 95.0x 98.39 99.67 0 100 0 GCF_030176655.1 JASNUC01 2066 2122 2122 6 3 46 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176675.1 HMT-060 KPL2826 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL2826 20 2294246 55.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/675/GCA_030176675.1_ASM3017667v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023398 ASM3017667v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.616 USA Illumina NovaSeq Baylor College of Medicine 96.0x 98.42 99.67 0 99.98 0.02 GCF_030176675.1 JASNUX01 2047 2106 2106 6 4 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176695.1 HMT-019 KPL4034 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL4034 56 2456752 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/695/GCA_030176695.1_ASM3017669v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023426 ASM3017669v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.970 USA Illumina NovaSeq Baylor College of Medicine 50.0x 97.05 99.78 0 99.99 1.11 GCF_030176695.1 JASNUD01 2278 2341 2341 7 3 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176715.1 HMT-060 KPL2733 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL2733 30 2294956 55.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/715/GCA_030176715.1_ASM3017671v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023390 ASM3017671v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.513 USA Illumina NovaSeq Baylor College of Medicine 90.0x 98.29 99.67 0.11 99.99 0.5 GCF_030176715.1 JASNVN01 2043 2100 2100 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176735.1 HMT-060 KPL2621 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL2621 28 2316762 55.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/735/GCA_030176735.1_ASM3017673v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023382 ASM3017673v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.400 USA Illumina NovaSeq Baylor College of Medicine 91.0x 98.41 99.67 0 100 0.02 GCF_030176735.1 JASNVT01 2075 2133 2133 6 4 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176755.1 HMT-019 KPL2617 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL2617 34 2560709 59.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/755/GCA_030176755.1_ASM3017675v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023380 ASM3017675v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.373 USA Illumina NovaSeq Baylor College of Medicine 99.0x 97 99.78 0 100 0.29 GCF_030176755.1 JASNVV01 2414 2479 2479 7 4 53 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176765.1 HMT-059 KPL2657 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL2657 22 2455295 56.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/765/GCA_030176765.1_ASM3017676v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023387 ASM3017676v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.473 USA Illumina NovaSeq Baylor College of Medicine 92.0x 98 99.22 0 99.99 0.06 GCF_030176765.1 JASNVO01 2209 2266 2266 6 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176785.1 HMT-019 KPL2783 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL2783 47 2483845 59.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/785/GCA_030176785.1_ASM3017678v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023393 ASM3017678v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.556 USA Illumina NovaSeq Baylor College of Medicine 94.0x 97.03 99.78 0 100 1.01 GCF_030176785.1 JASNVF01 2303 2367 2367 7 3 52 2 Corynebacterium_accolens_homd_HMT_019 GCA_030176795.1 HMT-060 KPL2773 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum KPL2773 33 2295525 55.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/795/GCA_030176795.1_ASM3017679v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842433 37637 SAMN35023392 ASM3017679v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.543 USA Illumina NovaSeq Baylor College of Medicine 95.0x 98.39 99.67 0 100 0 GCF_030176795.1 JASNVH01 2079 2137 2137 6 3 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030176835.1 HMT-059 KPL2755 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL2755 33 2526072 56.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/835/GCA_030176835.1_ASM3017683v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023391 ASM3017683v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.530 USA Illumina NovaSeq Baylor College of Medicine 92.0x 97.31 99.33 0 99.98 0.06 GCF_030176835.1 JASNVE01 2309 2367 2367 7 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176855.1 HMT-059 KPL2654 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum KPL2654 34 2539341 56.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/855/GCA_030176855.1_ASM3017685v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842433 43769 SAMN35023386 ASM3017685v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.460 USA Illumina NovaSeq Baylor College of Medicine 95.0x 97.42 99.78 0 99.97 0.08 GCF_030176855.1 JASNVP01 2337 2397 2397 7 5 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030176875.1 HMT-019 KPL2641 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL2641 44 2498624 59.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/875/GCA_030176875.1_ASM3017687v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023384 ASM3017687v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.426 USA Illumina NovaSeq Baylor College of Medicine 96.0x 96.85 99.78 0 100 0.02 GCF_030176875.1 JASNVR01 2306 2369 2369 7 3 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176885.1 HMT-019 KPL2618 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL2618 30 2442367 59.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/885/GCA_030176885.1_ASM3017688v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023381 ASM3017688v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.386 USA Illumina NovaSeq Baylor College of Medicine 92.0x 96.9 99.56 0 100 0.03 GCF_030176885.1 JASNVU01 2253 2312 2312 7 4 47 1 Corynebacterium_accolens_homd_HMT_019 GCA_030176905.1 HMT-019 KPL2652 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens KPL2652 43 2492158 59.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/176/905/GCA_030176905.1_ASM3017690v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842433 38284 SAMN35023385 ASM3017690v1 Contig SPAdes v. 3.13.0 2023-05-10T13:53:17.436 USA Illumina NovaSeq Baylor College of Medicine 94.0x 96.94 99.78 0 100 0.1 GCF_030176905.1 JASNVQ01 2280 2345 2345 7 4 53 1 Corynebacterium_accolens_homd_HMT_019 GCA_030177215.1 HMT-076 AM_AQ_BC5 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri AM_AQ_BC5 44 2433960 32.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/177/215/GCA_030177215.1_ASM3017721v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri_A PRJNA917242 1292 SAMN32531199 ASM3017721v1 Contig Unicycler v. 0.4.8 2023-01-02T06:33:04.143 India: Nagpur Illumina Miseq CSIR-National Environmental Engineering Research Institute (NEERI) 98.3x 94.14 99.73 0 99.99 0.25 GCF_030177215.1 JASCSE01 2371 2487 2487 55 4 56 1 Staphylococcus_warneri_homd_HMT_076 GCA_030177225.1 HMT-076 AM_AQ_BC3 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri AM_AQ_BC3 28 2522491 32.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/177/225/GCA_030177225.1_ASM3017722v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA917242 1292 SAMN32531198 ASM3017722v1 Contig Unicycler v. 0.4.8 2023-01-02T06:33:04.123 India: Nagpur Illumina MiSeq CSIR-National Environmental Engineering Research Institute (NEERI) 98.6x 99.62 99.73 0.1 99.99 0.03 GCF_030177225.1 JASCSF01 2444 2549 2549 49 3 52 1 Staphylococcus_warneri_homd_HMT_076 GCA_030177875.1 HMT-405 D2292 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis D2292 1 2201616 45.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/177/875/GCA_030177875.1_ASM3017787v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580843 ASM3017787v1 Chromosome Unicycler v. 0.4.8 2022-11-03T09:05:04.073 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 60.4x 91.76 0.23 100 0.01 GCF_030177875.1 2239 2330 2330 16 15 59 1 Kingella_negevensis_homd_HMT_405 GCA_030177895.1 HMT-405 SW7208426 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis SW7208426 1 2142207 45.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/177/895/GCA_030177895.1_ASM3017789v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580848 ASM3017789v1 Chromosome Unicycler v. 0.4.8 2022-11-03T09:05:04.123 Switzerland Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 75.7x 91.76 0.23 100 0.02 GCF_030177895.1 2172 2261 2261 14 15 59 1 Kingella_negevensis_homd_HMT_405 GCA_030180205.1 HMT-646 BB149 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae BB149 274 2078926 46.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/205/GCA_030180205.1_ASM3018020v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544728 ASM3018020v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.116 missing missing Illumina HiSeq University of Pennsylvania 48.0x 98.47 98.87 0.68 100 0.41 GCF_030180205.1 JARXSN01 2049 2106 2106 16 3 37 1 Kingella_kingae_homd_HMT_646 GCA_030180215.1 HMT-646 AA393 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae AA393 257 2076833 46.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/215/GCA_030180215.1_ASM3018021v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544722 ASM3018021v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.056 missing missing Illumina HiSeq University of Pennsylvania 101.0x 98.46 98.87 0.68 100 0.41 GCF_030180215.1 JARXSK01 2051 2110 2110 16 5 37 1 Kingella_kingae_homd_HMT_646 GCA_030180225.1 HMT-646 AA478 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae AA478 201 1940298 46.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/225/GCA_030180225.1_ASM3018022v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544724 ASM3018022v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.076 Israel missing Illumina HiSeq University of Pennsylvania 101.0x 99.75 98.87 0.23 100 0.08 GCF_030180225.1 JARXSL01 1917 1972 1972 12 4 38 1 Kingella_kingae_homd_HMT_646 GCA_030180265.1 HMT-646 BB270 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae BB270 170 1926728 46.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/265/GCA_030180265.1_ASM3018026v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544730 ASM3018026v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.140 missing missing Illumina HiSeq University of Pennsylvania 75.0x 98.45 98.87 0.45 100 0.16 GCF_030180265.1 JARXSP01 1876 1930 1930 13 4 36 1 Kingella_kingae_homd_HMT_646 GCA_030180275.1 HMT-646 AA392U8 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae AA392U8 188 1919505 46.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/275/GCA_030180275.1_ASM3018027v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544721 ASM3018027v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.046 missing missing Illumina HiSeq University of Pennsylvania 111.0x 98.45 98.87 0.45 100 0.07 GCF_030180275.1 JARXSJ01 1860 1912 1912 13 2 36 1 Kingella_kingae_homd_HMT_646 GCA_030180315.1 HMT-646 AA392D9 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae AA392D9 185 1927784 46.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/315/GCA_030180315.1_ASM3018031v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544720 ASM3018031v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.036 missing missing Illumina HiSeq University of Pennsylvania 142.0x 99.75 98.87 0.23 100 0.08 GCF_030180315.1 JARXSI01 1907 1961 1961 12 3 38 1 Kingella_kingae_homd_HMT_646 GCA_030180375.1 HMT-646 AA080 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae AA080 197 1978873 46.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/375/GCA_030180375.1_ASM3018037v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544716 ASM3018037v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:03.996 missing missing Illumina HiSeq University of Pennsylvania 137.0x 98.41 98.87 0.23 100 0.05 GCF_030180375.1 JARXSE01 1957 2027 2027 29 4 36 1 Kingella_kingae_homd_HMT_646 GCA_030180395.1 HMT-690 BRON_32 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_32 25 2108786 35.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/395/GCA_030180395.1_ASM3018039v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384994 ASM3018039v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.810 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 99.82 100 0 100 0.04 GCF_030180395.1 JAMGSR01 2010 2084 2084 17 7 49 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180405.1 HMT-690 BRON_30 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_30 161 2322315 34.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/405/GCA_030180405.1_ASM3018040v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384993 ASM3018040v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.797 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.6 100 0 100 0.39 GCF_030180405.1 JAMGSS01 2273 2351 2351 20 7 50 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180445.1 HMT-690 BRON_29 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_29 37 2225447 35.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/445/GCA_030180445.1_ASM3018044v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384992 ASM3018044v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.783 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.61 100 0 100 0.33 GCF_030180445.1 JAMGST01 2147 2224 2224 20 8 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180465.1 HMT-690 BRON_25 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_25 66 2185785 35.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/465/GCA_030180465.1_ASM3018046v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384989 ASM3018046v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.747 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.61 100 0 100 0.15 GCF_030180465.1 JAMGSW01 2105 2183 2183 21 8 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180475.1 HMT-690 BRON_23 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_23 45 2074656 35.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/475/GCA_030180475.1_ASM3018047v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384988 ASM3018047v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.733 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 99.8 100 0 100 0.04 GCF_030180475.1 JAMGSX01 1936 2009 2009 16 7 49 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180485.1 HMT-690 BRON_28 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_28 49 2185032 34.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/485/GCA_030180485.1_ASM3018048v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384991 ASM3018048v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.770 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.58 100 0 100 0.18 GCF_030180485.1 JAMGSU01 2118 2192 2192 17 8 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180505.1 HMT-690 BRON_27 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_27 65 2148898 35.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/505/GCA_030180505.1_ASM3018050v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384990 ASM3018050v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.757 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 99.78 100 0 100 0.15 GCF_030180505.1 JAMGSV01 2031 2103 2103 16 6 49 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180545.1 HMT-690 BRON_22 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_22 52 2223923 35.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/545/GCA_030180545.1_ASM3018054v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384987 ASM3018054v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.720 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.61 100 0 100 0.33 GCF_030180545.1 JAMGSY01 2142 2217 2217 20 6 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180565.1 HMT-690 BRON_17 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_17 63 2240035 34.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/565/GCA_030180565.1_ASM3018056v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384983 ASM3018056v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.667 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.6 100 0 100 0.39 GCF_030180565.1 JAMGTC01 2153 2227 2227 18 7 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180575.1 HMT-690 BRON_18 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_18 102 2011162 35.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/575/GCA_030180575.1_ASM3018057v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384984 ASM3018057v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.680 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.55 100 0 100 0.09 GCF_030180575.1 JAMGTB01 1879 1952 1952 17 7 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180585.1 HMT-690 BRON_20 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_20 57 2215131 35.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/585/GCA_030180585.1_ASM3018058v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384986 ASM3018058v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.707 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.51 100 0 100 0.14 GCF_030180585.1 JAMGSZ01 2135 2213 2213 20 9 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180625.1 HMT-690 BRON_15 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_15 67 2104199 35.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/625/GCA_030180625.1_ASM3018062v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384982 ASM3018062v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.657 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.61 100 0 100 0.12 GCF_030180625.1 JAMGTD01 2012 2088 2088 17 9 49 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180645.1 HMT-690 BRON_12 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_12 32 2075133 35.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/645/GCA_030180645.1_ASM3018064v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384979 ASM3018064v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.617 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.63 100 0.11 100 0.05 GCF_030180645.1 JAMGTG01 1975 2047 2047 17 6 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180665.1 HMT-690 BRON_13 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_13 34 2036402 35.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/665/GCA_030180665.1_ASM3018066v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384980 ASM3018066v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.630 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.92 100 0 100 0.09 GCF_030180665.1 JAMGTF01 1854 1927 1927 17 7 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180685.1 HMT-690 BRON_11 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_11 78 2087199 35.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/685/GCA_030180685.1_ASM3018068v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384978 ASM3018068v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.603 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.61 100 0 100 0.2 GCF_030180685.1 JAMGTH01 1969 2044 2044 20 6 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180695.1 HMT-690 BRON_14 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_14 43 2224641 35.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/695/GCA_030180695.1_ASM3018069v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384981 ASM3018069v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.643 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.61 100 0 100 0.33 GCF_030180695.1 JAMGTE01 2145 2222 2222 20 8 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180725.1 HMT-690 BRON_10 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_10 277 2075585 35.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/725/GCA_030180725.1_ASM3018072v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384977 ASM3018072v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.590 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.63 100 0 100 0.09 GCF_030180725.1 JAMGTI01 1977 2049 2049 17 7 47 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180765.1 HMT-690 BRON_8 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_8 84 2432335 35.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/765/GCA_030180765.1_ASM3018076v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384975 ASM3018076v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.560 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.39 100 0.34 100 0.86 GCF_030180765.1 JAMGTK01 2439 2523 2523 28 7 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180785.1 HMT-690 BRON_7 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_7 51 2018695 35.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/785/GCA_030180785.1_ASM3018078v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384974 ASM3018078v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.550 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.62 100 0 100 0.1 GCF_030180785.1 JAMGTL01 1880 1952 1952 17 6 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180805.1 HMT-690 BRON_6 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_6 38 2083725 35.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/805/GCA_030180805.1_ASM3018080v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384973 ASM3018080v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.537 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 99.01 100 0 100 0.06 GCF_030180805.1 JAMGTM01 1883 1956 1956 17 7 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180825.1 HMT-690 BRON_4 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_4 73 2174870 35.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/825/GCA_030180825.1_ASM3018082v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384971 ASM3018082v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.507 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.63 100 0 100 0.06 GCF_030180825.1 JAMGTO01 2035 2109 2109 18 7 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180835.1 HMT-690 BRON_5 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_5 74 2179695 34.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/835/GCA_030180835.1_ASM3018083v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384972 ASM3018083v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.523 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.58 100 0 100 0.17 GCF_030180835.1 JAMGTN01 2105 2181 2181 17 9 49 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180865.1 HMT-690 BRON_3 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_3 120 2428055 35.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/865/GCA_030180865.1_ASM3018086v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384970 ASM3018086v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.497 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.39 100 0 100 0.24 GCF_030180865.1 JAMGTP01 2425 2507 2507 26 7 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180885.1 HMT-690 BRON_9 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_9 113 2114472 35.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/885/GCA_030180885.1_ASM3018088v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384976 ASM3018088v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.577 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.61 100 0 100 0.12 GCF_030180885.1 JAMGTJ01 2012 2088 2088 17 9 49 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180905.1 HMT-690 BRON_2 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_2 49 2257062 35.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/905/GCA_030180905.1_ASM3018090v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384969 ASM3018090v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.483 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.54 100 0 100 0.19 GCF_030180905.1 JAMGTQ01 2214 2292 2292 20 8 49 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180925.1 HMT-690 BRON_1 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum BRON_1 79 2138413 35.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/925/GCA_030180925.1_ASM3018092v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJNA824050 859 SAMN27384968 ASM3018092v1 Contig SPAdes v. 3.15.4 2022-04-06T13:37:04.463 United Kingdom:Aberystwyth throat Illumina HiSeq Cardiff Metropolitan University 30.0x 98.61 100 0.22 100 0.19 GCF_030180925.1 JAMGTR01 2038 2114 2114 20 7 48 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_030180945.1 HMT-405 CC443 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis CC443 17 2214609 45.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/945/GCA_030180945.1_ASM3018094v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580841 ASM3018094v1 Contig Unicycler v. 0.4.8 2022-11-03T09:05:04.053 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 51.0x 91.99 0.68 100 0.07 GCF_030180945.1 JARWID01 2216 2305 2305 12 17 59 1 Kingella_negevensis_homd_HMT_405 GCA_030180955.1 HMT-405 CC132 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis CC132 45 2096725 45.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/955/GCA_030180955.1_ASM3018095v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580840 ASM3018095v1 Contig Unicycler v. 0.4.8 2022-11-03T09:05:04.043 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 79.5x 91.76 0.23 100 0.05 GCF_030180955.1 JARWIC01 2130 2204 2204 15 6 52 1 Kingella_negevensis_homd_HMT_405 GCA_030180965.1 HMT-405 AA267 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis AA267 107 2088117 45.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/965/GCA_030180965.1_ASM3018096v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580837 ASM3018096v1 Contig Unicycler v. 0.4.8 2022-11-03T09:05:04.010 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 57.6x 91.99 0.45 100 0.04 GCF_030180965.1 JARWIB01 2094 2161 2161 11 3 52 1 Kingella_negevensis_homd_HMT_405 GCA_030180985.1 HMT-405 BB331 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis BB331 3 2211394 45.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/985/GCA_030180985.1_ASM3018098v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580838 ASM3018098v1 Contig Unicycler v. 0.4.8 2022-11-03T09:05:04.023 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 62.0x 91.99 0.68 100 0.07 GCF_030180985.1 JARWMR01 2231 2318 2318 12 15 59 1 Kingella_negevensis_homd_HMT_405 GCA_030180995.1 HMT-405 BB526 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis BB526 3 2211538 45.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/180/995/GCA_030180995.1_ASM3018099v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580839 ASM3018099v1 Contig Unicycler v. 0.4.8 2022-11-03T09:05:04.033 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 71.4x 91.99 0.68 100 0.07 GCF_030180995.1 JARWMS01 2228 2314 2314 12 15 58 1 Kingella_negevensis_homd_HMT_405 GCA_030181045.1 HMT-405 CC505b Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis CC505b 39 2166202 45.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/045/GCA_030181045.1_ASM3018104v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580842 ASM3018104v1 Contig Unicycler v. 0.4.8 2022-11-03T09:05:04.060 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 68.3x 91.99 0.45 100 0.03 GCF_030181045.1 JARWIE01 2192 2274 2274 11 12 58 1 Kingella_negevensis_homd_HMT_405 GCA_030181055.1 HMT-405 EPA014 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis EPA014 5 2210087 45.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/055/GCA_030181055.1_ASM3018105v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580845 ASM3018105v1 Contig Unicycler v. 0.4.8 2022-11-03T09:05:04.090 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 85.7x 91.99 0.68 100 0.09 GCF_030181055.1 JARWMT01 2223 2310 2310 12 15 59 1 Kingella_negevensis_homd_HMT_405 GCA_030181065.1 HMT-405 PED555 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis PED555 30 2160838 45.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/065/GCA_030181065.1_ASM3018106v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580846 ASM3018106v1 Contig Unicycler v. 0.4.8 2022-11-03T09:05:04.100 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 66.1x 91.99 0.23 100 0.03 GCF_030181065.1 JARWIG01 2195 2270 2270 10 9 55 1 Kingella_negevensis_homd_HMT_405 GCA_030181105.1 HMT-405 D7641 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis D7641 11 2189528 45.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/105/GCA_030181105.1_ASM3018110v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580844 ASM3018110v1 Contig Unicycler v. 0.4.8 2022-11-03T09:05:04.080 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 84.8x 91.99 0.45 100 0.03 GCF_030181105.1 JARWIF01 2219 2305 2305 11 15 59 1 Kingella_negevensis_homd_HMT_405 GCA_030181115.1 HMT-405 PVC1712 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis PVC1712 20 2194274 45.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/115/GCA_030181115.1_ASM3018111v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJNA896475 1522312 SAMN31580847 ASM3018111v1 Contig Unicycler v. 0.4.8 2022-11-03T09:05:04.113 Israel:Beer-Sheva Oropharyngeal Swab Oxford Nanopore MinION; Illumina NovaSeq University of Pennsylvania 71.4x 91.99 0.68 100 0.07 GCF_030181115.1 JARWIH01 2206 2287 2287 12 11 57 1 Kingella_negevensis_homd_HMT_405 GCA_030181145.1 HMT-646 UnkB Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae UnkB 207 1970142 46.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/145/GCA_030181145.1_ASM3018114v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544800 ASM3018114v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.983 missing missing Illumina HiSeq University of Pennsylvania 106.0x 98.47 98.76 0.3 100 0.07 GCF_030181145.1 JARXUW01 1958 2018 2018 18 3 38 1 Kingella_kingae_homd_HMT_646 GCA_030181155.1 HMT-646 Sch187 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae Sch187 203 1932055 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/155/GCA_030181155.1_ASM3018115v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544796 ASM3018115v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.943 Israel missing Illumina HiSeq University of Pennsylvania 101.0x 98.5 98.87 0 100 0.06 GCF_030181155.1 JARXUU01 1892 1946 1946 12 5 36 1 Kingella_kingae_homd_HMT_646 GCA_030181185.1 HMT-646 UnkA Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae UnkA 198 1941097 46.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/185/GCA_030181185.1_ASM3018118v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544799 ASM3018118v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.973 missing missing Illumina HiSeq University of Pennsylvania 26.0x 98.49 98.83 0.58 100 0.06 GCF_030181185.1 JARXUV01 1924 1984 1984 16 6 37 1 Kingella_kingae_homd_HMT_646 GCA_030181195.1 HMT-646 PYHERBlood Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae PYHERBlood 284 2052192 46.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/195/GCA_030181195.1_ASM3018119v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544794 ASM3018119v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.920 missing missing Illumina HiSeq University of Pennsylvania 100.0x 98.45 98.87 0.08 100 0.15 GCF_030181195.1 JARXUS01 2064 2127 2127 20 4 38 1 Kingella_kingae_homd_HMT_646 GCA_030181205.1 HMT-646 PYP8 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae PYP8 282 2036081 46.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/205/GCA_030181205.1_ASM3018120v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544795 ASM3018120v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.933 missing missing Illumina HiSeq University of Pennsylvania 95.0x 98.47 98.87 0.08 100 0.16 GCF_030181205.1 JARXUT01 2039 2100 2100 20 3 37 1 Kingella_kingae_homd_HMT_646 GCA_030181245.1 HMT-646 KK97 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK97 231 1961205 46.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/245/GCA_030181245.1_ASM3018124v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544774 ASM3018124v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.666 Israel missing Illumina HiSeq University of Pennsylvania 100.0x 98.53 98.98 0.9 100 0.21 GCF_030181245.1 JARXUR01 1931 1990 1990 16 5 37 1 Kingella_kingae_homd_HMT_646 GCA_030181255.1 HMT-646 KK96 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK96 174 1942533 46.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/255/GCA_030181255.1_ASM3018125v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544773 ASM3018125v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.656 Israel missing Illumina HiSeq University of Pennsylvania 35.0x 98.5 98.87 0.23 100 0.03 GCF_030181255.1 JARXUQ01 1925 1979 1979 16 3 34 1 Kingella_kingae_homd_HMT_646 GCA_030181285.1 HMT-646 KK93 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK93 211 1931571 46.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/285/GCA_030181285.1_ASM3018128v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544771 ASM3018128v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.636 Israel missing Illumina HiSeq University of Pennsylvania 26.0x 98.54 98.98 0.23 100 0.06 GCF_030181285.1 JARXUO01 1896 1951 1951 13 3 38 1 Kingella_kingae_homd_HMT_646 GCA_030181305.1 HMT-646 KK92 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK92 206 1981258 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/305/GCA_030181305.1_ASM3018130v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544770 ASM3018130v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.630 Israel missing Illumina HiSeq University of Pennsylvania 19.0x 98.43 98.87 0 100 0.1 GCF_030181305.1 JARXUN01 1973 2034 2034 17 4 39 1 Kingella_kingae_homd_HMT_646 GCA_030181325.1 HMT-646 KK94 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK94 185 1943101 46.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/325/GCA_030181325.1_ASM3018132v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544772 ASM3018132v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.646 Israel missing Illumina HiSeq University of Pennsylvania 110.0x 98.49 98.87 0.23 100 0.04 GCF_030181325.1 JARXUP01 1923 1982 1982 16 5 37 1 Kingella_kingae_homd_HMT_646 GCA_030181345.1 HMT-646 KK86 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK86 213 1982234 46.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/345/GCA_030181345.1_ASM3018134v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544769 ASM3018134v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.620 Israel missing Illumina HiSeq University of Pennsylvania 80.0x 98.43 98.87 0 100 0.1 GCF_030181345.1 JARXUM01 1974 2035 2035 17 5 38 1 Kingella_kingae_homd_HMT_646 GCA_030181355.1 HMT-646 KK80 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK80 217 1985461 46.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/355/GCA_030181355.1_ASM3018135v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544767 ASM3018135v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.600 Israel missing Illumina HiSeq University of Pennsylvania 100.0x 98.43 98.87 0 100 0.1 GCF_030181355.1 JARXUK01 1979 2038 2038 17 3 38 1 Kingella_kingae_homd_HMT_646 GCA_030181365.1 HMT-646 KK82 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK82 211 1951817 46.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/365/GCA_030181365.1_ASM3018136v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544768 ASM3018136v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.610 Israel missing Illumina HiSeq University of Pennsylvania 32.0x 98.45 98.87 0.23 100 0.14 GCF_030181365.1 JARXUL01 1943 1997 1997 14 3 36 1 Kingella_kingae_homd_HMT_646 GCA_030181405.1 HMT-646 KK79 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK79 207 1985343 46.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/405/GCA_030181405.1_ASM3018140v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544766 ASM3018140v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.590 Israel missing Illumina HiSeq University of Pennsylvania 50.0x 98.44 98.98 0.23 100 0.07 GCF_030181405.1 JARXUJ01 1971 2027 2027 16 4 35 1 Kingella_kingae_homd_HMT_646 GCA_030181425.1 HMT-646 KK70 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK70 191 1961905 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/425/GCA_030181425.1_ASM3018142v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544765 ASM3018142v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.580 Israel missing Illumina HiSeq University of Pennsylvania 80.0x 98.42 98.87 0.23 100 0.15 GCF_030181425.1 JARXUI01 1953 2009 2009 13 3 39 1 Kingella_kingae_homd_HMT_646 GCA_030181445.1 HMT-646 KK69 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK69 180 1919283 46.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/445/GCA_030181445.1_ASM3018144v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544764 ASM3018144v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.570 missing missing Illumina HiSeq University of Pennsylvania 76.0x 98.45 98.65 0.23 100 0.06 GCF_030181445.1 JARXUH01 1868 1922 1922 14 3 36 1 Kingella_kingae_homd_HMT_646 GCA_030181465.1 HMT-646 KK65 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK65 240 1990257 46.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/465/GCA_030181465.1_ASM3018146v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544762 ASM3018146v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.550 missing missing Illumina HiSeq University of Pennsylvania 80.0x 98.43 98.87 0 100 0.1 GCF_030181465.1 JARXUF01 1974 2033 2033 17 2 39 1 Kingella_kingae_homd_HMT_646 GCA_030181475.1 HMT-646 KK68 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK68 235 1997440 46.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/475/GCA_030181475.1_ASM3018147v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544763 ASM3018147v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.560 missing missing Illumina HiSeq University of Pennsylvania 110.0x 98.54 98.98 0.3 100 0.04 GCF_030181475.1 JARXUG01 1986 2044 2044 18 4 35 1 Kingella_kingae_homd_HMT_646 GCA_030181505.1 HMT-646 KK64 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK64 200 1956024 46.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/505/GCA_030181505.1_ASM3018150v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544761 ASM3018150v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.540 Israel missing Illumina HiSeq University of Pennsylvania 123.0x 98.44 98.87 0 100 0.13 GCF_030181505.1 JARXUE01 1943 2001 2001 14 4 39 1 Kingella_kingae_homd_HMT_646 GCA_030181525.1 HMT-646 KK63 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK63 277 1981643 46.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/525/GCA_030181525.1_ASM3018152v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544760 ASM3018152v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.530 Israel missing Illumina HiSeq University of Pennsylvania 74.0x 98.47 98.76 0.58 100 0.08 GCF_030181525.1 JARXUD01 1966 2026 2026 17 5 37 1 Kingella_kingae_homd_HMT_646 GCA_030181545.1 HMT-646 KK61 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK61 224 1947712 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/545/GCA_030181545.1_ASM3018154v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544759 ASM3018154v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.520 Israel missing Illumina HiSeq University of Pennsylvania 22.0x 98.43 98.65 0.23 100 0.07 GCF_030181545.1 JARXUC01 1927 1981 1981 13 3 37 1 Kingella_kingae_homd_HMT_646 GCA_030181565.1 HMT-646 KK6 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK6 210 1960805 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/565/GCA_030181565.1_ASM3018156v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544749 ASM3018156v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.373 Israel missing Illumina HiSeq University of Pennsylvania 120.0x 98.43 98.87 0.24 100 0.15 GCF_030181565.1 JARXUB01 1948 2006 2006 14 4 39 1 Kingella_kingae_homd_HMT_646 GCA_030181575.1 HMT-646 KK57 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK57 172 1941865 46.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/575/GCA_030181575.1_ASM3018157v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544757 ASM3018157v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.453 Israel missing Illumina HiSeq University of Pennsylvania 66.0x 98.49 98.87 0.23 100 0.03 GCF_030181575.1 JARXUA01 1923 1983 1983 16 4 39 1 Kingella_kingae_homd_HMT_646 GCA_030181595.1 HMT-646 KK56 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK56 220 1971416 46.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/595/GCA_030181595.1_ASM3018159v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544756 ASM3018159v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.446 Israel missing Illumina HiSeq University of Pennsylvania 49.0x 98.48 98.76 0.3 100 0.05 GCF_030181595.1 JARXTZ01 1956 2016 2016 18 4 37 1 Kingella_kingae_homd_HMT_646 GCA_030181625.1 HMT-646 KK48 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK48 260 1962270 46.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/625/GCA_030181625.1_ASM3018162v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544755 ASM3018162v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.436 missing missing Illumina HiSeq University of Pennsylvania 50.0x 98.48 98.87 0 100 0.05 GCF_030181625.1 JARXTY01 1911 1965 1965 13 3 37 1 Kingella_kingae_homd_HMT_646 GCA_030181645.1 HMT-646 KK29 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK29 190 1927304 46.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/645/GCA_030181645.1_ASM3018164v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544754 ASM3018164v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.423 missing missing Illumina HiSeq University of Pennsylvania 14.0x 98.45 98.87 0.23 100 0.09 GCF_030181645.1 JARXTX01 1867 1920 1920 13 3 36 1 Kingella_kingae_homd_HMT_646 GCA_030181665.1 HMT-646 KK243 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK243 208 1935919 46.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/665/GCA_030181665.1_ASM3018166v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544793 ASM3018166v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.913 Israel missing Illumina HiSeq University of Pennsylvania 60.0x 98.47 98.76 0.45 100 0.07 GCF_030181665.1 JARXTW01 1913 1968 1968 15 4 35 1 Kingella_kingae_homd_HMT_646 GCA_030181675.1 HMT-646 KK21 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK21 205 1931626 46.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/675/GCA_030181675.1_ASM3018167v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544753 ASM3018167v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.413 missing missing Illumina HiSeq University of Pennsylvania 120.0x 98.45 98.87 0.23 100 0.07 GCF_030181675.1 JARXTV01 1876 1929 1929 13 3 36 1 Kingella_kingae_homd_HMT_646 GCA_030181705.1 HMT-646 KK200 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK200 221 1983581 46.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/705/GCA_030181705.1_ASM3018170v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544792 ASM3018170v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.903 Israel missing Illumina HiSeq University of Pennsylvania 89.0x 98.47 98.76 0.3 100 0.09 GCF_030181705.1 JARXTU01 1972 2028 2028 15 4 36 1 Kingella_kingae_homd_HMT_646 GCA_030181715.1 HMT-646 KK2 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK2 224 1974858 46.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/715/GCA_030181715.1_ASM3018171v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544746 ASM3018171v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.340 missing missing Illumina HiSeq University of Pennsylvania 28.0x 98.43 98.65 0 100 0.09 GCF_030181715.1 JARXTT01 1957 2020 2020 18 4 40 1 Kingella_kingae_homd_HMT_646 GCA_030181745.1 HMT-646 KK197 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK197 284 1998194 46.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/745/GCA_030181745.1_ASM3018174v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544790 ASM3018174v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.883 Israel missing Illumina HiSeq University of Pennsylvania 20.0x 98.53 98.01 1.75 100 0.23 GCF_030181745.1 JARXTS01 2002 2053 2053 13 4 33 1 Kingella_kingae_homd_HMT_646 GCA_030181765.1 HMT-646 KK181 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK181 191 1929130 46.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/765/GCA_030181765.1_ASM3018176v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544788 ASM3018176v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.863 Israel missing Illumina HiSeq University of Pennsylvania 80.0x 98.44 98.87 0.3 100 0.05 GCF_030181765.1 JARXTQ01 1900 1969 1969 27 3 38 1 Kingella_kingae_homd_HMT_646 GCA_030181785.1 HMT-646 KK19 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK19 208 1928480 46.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/785/GCA_030181785.1_ASM3018178v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544752 ASM3018178v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.403 missing missing Illumina HiSeq University of Pennsylvania 41.0x 98.45 98.87 0.23 100 0.07 GCF_030181785.1 JARXTR01 1869 1924 1924 13 4 37 1 Kingella_kingae_homd_HMT_646 GCA_030181805.1 HMT-646 KK16 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK16 233 1959784 46.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/805/GCA_030181805.1_ASM3018180v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544751 ASM3018180v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.396 missing missing Illumina HiSeq University of Pennsylvania 35.0x 98.53 98.98 0.23 100 0.1 GCF_030181805.1 JARXTO01 1931 1988 1988 16 3 37 1 Kingella_kingae_homd_HMT_646 GCA_030181815.1 HMT-646 KK171 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK171 192 1939893 46.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/815/GCA_030181815.1_ASM3018181v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544787 ASM3018181v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.853 Israel missing Illumina HiSeq University of Pennsylvania 100.0x 98.51 98.87 0 100 0.06 GCF_030181815.1 JARXTP01 1889 1944 1944 13 5 36 1 Kingella_kingae_homd_HMT_646 GCA_030181845.1 HMT-646 KK138 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK138 228 1971118 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/845/GCA_030181845.1_ASM3018184v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544785 ASM3018184v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.836 Israel missing Illumina HiSeq University of Pennsylvania 80.0x 98.54 98.98 0.3 100 0.05 GCF_030181845.1 JARXTN01 1943 1996 1996 13 3 36 1 Kingella_kingae_homd_HMT_646 GCA_030181865.1 HMT-646 PYKK125 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae PYKK125 204 1979494 46.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/865/GCA_030181865.1_ASM3018186v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544783 ASM3018186v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.816 Israel missing Illumina HiSeq University of Pennsylvania 30.0x 98.41 98.87 0.23 100 0.05 GCF_030181865.1 JARXTM01 1953 2015 2015 20 4 37 1 Kingella_kingae_homd_HMT_646 GCA_030181885.1 HMT-646 KK124 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK124 209 1996919 46.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/885/GCA_030181885.1_ASM3018188v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544782 ASM3018188v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.806 Israel missing Illumina HiSeq University of Pennsylvania 90.0x 98.54 98.98 0.3 100 0.04 GCF_030181885.1 JARXTL01 1980 2039 2039 18 4 36 1 Kingella_kingae_homd_HMT_646 GCA_030181915.1 HMT-646 KK123 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK123 198 1996233 46.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/915/GCA_030181915.1_ASM3018191v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544781 ASM3018191v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.776 Israel missing Illumina HiSeq University of Pennsylvania 50.0x 98.54 98.98 0.3 100 0.04 GCF_030181915.1 JARXTK01 1979 2037 2037 18 4 35 1 Kingella_kingae_homd_HMT_646 GCA_030181925.1 HMT-646 KK119 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK119 259 1968033 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/925/GCA_030181925.1_ASM3018192v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544779 ASM3018192v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.716 Israel missing Illumina HiSeq University of Pennsylvania 20.0x 98.53 98.98 1.2 99.99 1.72 GCF_030181925.1 JARXTI01 1956 2007 2007 14 3 33 1 Kingella_kingae_homd_HMT_646 GCA_030181985.1 HMT-646 KK103 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK103 193 1958793 46.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/181/985/GCA_030181985.1_ASM3018198v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544777 ASM3018198v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.696 Israel missing Illumina HiSeq University of Pennsylvania 55.0x 98.53 98.98 0.23 100 0.03 GCF_030181985.1 JARXTG01 1937 1995 1995 18 4 35 1 Kingella_kingae_homd_HMT_646 GCA_030182005.1 HMT-646 KK03 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK03 214 1979234 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/005/GCA_030182005.1_ASM3018200v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544748 ASM3018200v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.363 missing missing Illumina HiSeq University of Pennsylvania 98.0x 98.42 98.87 1.13 100 1.03 GCF_030182005.1 JARXTD01 1957 2012 2012 14 3 37 1 Kingella_kingae_homd_HMT_646 GCA_030182015.1 HMT-646 KK101 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK101 229 1975200 46.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/015/GCA_030182015.1_ASM3018201v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544776 ASM3018201v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.686 Israel missing Illumina HiSeq University of Pennsylvania 35.0x 98.43 98.87 0 100 0.1 GCF_030182015.1 JARXTF01 1961 2023 2023 17 4 40 1 Kingella_kingae_homd_HMT_646 GCA_030182065.1 HMT-646 KK01 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK01 207 1962625 46.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/065/GCA_030182065.1_ASM3018206v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544745 ASM3018206v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.326 missing missing Illumina HiSeq University of Pennsylvania 120.0x 98.42 98.87 0.23 100 0.15 GCF_030182065.1 JARXTC01 1952 2010 2010 14 5 38 1 Kingella_kingae_homd_HMT_646 GCA_030182085.1 HMT-646 KahiriBlood Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KahiriBlood 191 1963794 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/085/GCA_030182085.1_ASM3018208v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544743 ASM3018208v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.276 missing missing Illumina HiSeq University of Pennsylvania 140.0x 98.44 98.87 0 100 0.12 GCF_030182085.1 JARXTA01 1958 2011 2011 13 3 36 1 Kingella_kingae_homd_HMT_646 GCA_030182105.1 HMT-646 KahiriPH1 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KahiriPH1 206 1962296 46.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/105/GCA_030182105.1_ASM3018210v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544744 ASM3018210v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.290 missing missing Illumina HiSeq University of Pennsylvania 120.0x 98.44 98.87 0 100 0.12 GCF_030182105.1 JARXTB01 1956 2012 2012 13 3 39 1 Kingella_kingae_homd_HMT_646 GCA_030182125.1 HMT-646 KK129 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae KK129 205 1971649 46.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/125/GCA_030182125.1_ASM3018212v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544742 ASM3018212v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.266 Israel missing Illumina HiSeq University of Pennsylvania 100.0x 98.44 98.87 0 100 0.13 GCF_030182125.1 JARXSZ01 1959 2014 2014 13 3 38 1 Kingella_kingae_homd_HMT_646 GCA_030182145.1 HMT-646 ItzPH1 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae ItzPH1 208 1982091 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/145/GCA_030182145.1_ASM3018214v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544741 ASM3018214v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.256 missing missing Illumina HiSeq University of Pennsylvania 36.0x 98.43 98.65 0 100 0.13 GCF_030182145.1 JARXSY01 1973 2032 2032 15 4 39 1 Kingella_kingae_homd_HMT_646 GCA_030182155.1 HMT-646 ItzBlood Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae ItzBlood 237 1985027 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/155/GCA_030182155.1_ASM3018215v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544740 ASM3018215v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.243 missing missing Illumina HiSeq University of Pennsylvania 64.0x 98.43 98.65 0 100 0.1 GCF_030182155.1 JARXSX01 1970 2028 2028 15 4 38 1 Kingella_kingae_homd_HMT_646 GCA_030182185.1 HMT-646 IDOPH2 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae IDOPH2 199 1960038 46.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/185/GCA_030182185.1_ASM3018218v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544739 ASM3018218v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.233 missing missing Illumina HiSeq University of Pennsylvania 79.0x 98.54 98.98 0.23 100 0.03 GCF_030182185.1 JARXSW01 1931 1989 1989 19 4 34 1 Kingella_kingae_homd_HMT_646 GCA_030182205.1 HMT-646 IDOPH1 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae IDOPH1 219 1967805 46.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/205/GCA_030182205.1_ASM3018220v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544738 ASM3018220v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.223 missing missing Illumina HiSeq University of Pennsylvania 45.0x 98.53 98.76 0.68 100 0.12 GCF_030182205.1 JARXSV01 1948 2006 2006 20 3 34 1 Kingella_kingae_homd_HMT_646 GCA_030182225.1 HMT-646 CC062 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae CC062 227 1975766 46.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/225/GCA_030182225.1_ASM3018222v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544734 ASM3018222v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.180 missing missing Illumina HiSeq University of Pennsylvania 33.0x 98.75 98.87 0.45 100 0.07 GCF_030182225.1 JARXSS01 1941 2001 2001 14 4 41 1 Kingella_kingae_homd_HMT_646 GCA_030182245.1 HMT-646 IDOBlood Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae IDOBlood 203 1966161 46.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/245/GCA_030182245.1_ASM3018224v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544737 ASM3018224v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.210 missing missing Illumina HiSeq University of Pennsylvania 102.0x 98.54 98.98 0.68 100 0.17 GCF_030182245.1 JARXSU01 1944 2004 2004 19 4 36 1 Kingella_kingae_homd_HMT_646 GCA_030182285.1 HMT-646 BB300 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae BB300 188 1956729 46.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/285/GCA_030182285.1_ASM3018228v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544732 ASM3018228v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.160 missing missing Illumina HiSeq University of Pennsylvania 73.0x 98.46 98.76 1.81 100 0.35 GCF_030182285.1 JARXSR01 1929 1985 1985 14 3 38 1 Kingella_kingae_homd_HMT_646 GCA_030182305.1 HMT-646 AA574 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae AA574 199 1923955 46.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/305/GCA_030182305.1_ASM3018230v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544725 ASM3018230v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.086 missing missing Illumina HiSeq University of Pennsylvania 26.0x 98.44 98.87 0.73 100 0.3 GCF_030182305.1 JARXSM01 1871 1926 1926 13 3 38 1 Kingella_kingae_homd_HMT_646 GCA_030182315.1 HMT-646 BB285 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae BB285 174 1924862 46.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/315/GCA_030182315.1_ASM3018231v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544731 ASM3018231v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.150 missing missing Illumina HiSeq University of Pennsylvania 110.0x 98.44 98.87 0.3 100 0.05 GCF_030182315.1 JARXSQ01 1896 1964 1964 27 4 36 1 Kingella_kingae_homd_HMT_646 GCA_030182365.1 HMT-646 AA026 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae AA026 247 1973779 46.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/365/GCA_030182365.1_ASM3018236v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544714 ASM3018236v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:03.966 Israel missing Illumina HiSeq University of Pennsylvania 140.0x 98.45 98.87 1.09 100 0.13 GCF_030182365.1 JARXSC01 1946 2002 2002 14 4 37 1 Kingella_kingae_homd_HMT_646 GCA_030182385.1 HMT-646 AA097 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae AA097 178 1926327 46.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/385/GCA_030182385.1_ASM3018238v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544717 ASM3018238v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:04.006 missing missing Illumina HiSeq University of Pennsylvania 105.0x 99.75 98.87 0.23 100 0.07 GCF_030182385.1 JARXSF01 1907 1960 1960 11 4 37 1 Kingella_kingae_homd_HMT_646 GCA_030182405.1 HMT-646 AA010 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae AA010 214 1981813 46.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/182/405/GCA_030182405.1_ASM3018240v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJNA896475 504 SAMN31544713 ASM3018240v1 Contig SPAdes v. 3.14.0 2022-11-01T07:26:03.940 missing missing Illumina HiSeq University of Pennsylvania 88.0x 98.47 98.53 0.3 100 0.07 GCF_030182405.1 JARXSB01 1971 2025 2025 15 3 35 1 Kingella_kingae_homd_HMT_646 GCA_030212385.1 HMT-567 UMB9967 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae UMB9967 21 2619734 33.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/212/385/GCA_030212385.1_ASM3021238v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA970254 29380 SAMN34996770 ASM3021238v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:11.447 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 169.9x 98.33 98.69 0.05 99.78 0.01 GCF_030212385.1 JASOEC01 2550 2670 2670 80 1 38 1 Staphylococcus_caprae_homd_HMT_567 GCA_030215825.1 HMT-576 UMB8371 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus UMB8371 27 1830535 37.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/215/825/GCA_030215825.1_ASM3021582v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA970254 76860 SAMN34996632 ASM3021582v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:09.897 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 888.4x 97.41 99 0.78 99.97 0.16 GCF_030215825.1 JASOJK01 1758 1824 1824 38 0 27 1 Streptococcus_constellatus_homd_HMT_576 GCA_030216405.1 HMT-682 UMB7974A Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa UMB7974A 211 2513859 51.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/216/405/GCA_030216405.1_ASM3021640v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa PRJNA970254 488 SAMN34996588 ASM3021640v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:09.433 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 118.9x 99.68 0.11 100 0.07 GCF_030216405.1 JASOLC01 2220 2294 2294 17 3 53 1 Neisseria_mucosa_homd_HMT_682 GCA_030216785.1 HMT-031 UMB6494 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB6494 164 2533841 58.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/216/785/GCA_030216785.1_ASM3021678v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA970254 43765 SAMN34996549 ASM3021678v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:08.990 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 207.9x 96.53 100 0.89 100 0.09 GCF_030216785.1 JASOMP01 2165 2238 2238 15 4 53 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_030217125.1 HMT-062 UMB3162 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-062 Corynebacterium simulans UMB3162 43 2646359 59.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/217/125/GCA_030217125.1_ASM3021712v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium simulans PRJNA970254 146827 SAMN34996534 ASM3021712v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:08.833 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 53.6x 99.56 0.09 99.96 0.17 GCF_030217125.1 JASONE01 2489 2549 2549 7 3 49 1 Corynebacterium_simulans_homd_HMT_062 GCA_030217155.1 HMT-677 UMB0829 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis UMB0829 33 1969270 40.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/217/155/GCA_030217155.1_ASM3021715v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_AT PRJNA970254 28037 SAMN34996533 ASM3021715v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:08.823 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 235.4x 93.67 97.83 1 99.96 0.01 GCF_030217155.1 JASONF01 1855 1962 1962 61 1 44 1 Streptococcus_mitis_homd_HMT_677 GCA_030217265.1 HMT-031 UMB3106 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB3106 136 2658637 58.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/217/265/GCA_030217265.1_ASM3021726v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA970254 43765 SAMN34996527 ASM3021726v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:08.763 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 198.8x 96.52 100 0 100 0.29 GCF_030217265.1 JASONL01 2292 2365 2365 13 3 56 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_030217915.1 HMT-567 UMB1181 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae UMB1181 78 2662207 33.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/217/915/GCA_030217915.1_ASM3021791v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJNA970254 29380 SAMN34996490 ASM3021791v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:08.363 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 19.6x 98.31 99.81 0.05 100 0 GCF_030217915.1 JASOOT01 2586 2701 2701 70 2 42 1 Staphylococcus_caprae_homd_HMT_567 GCA_030218005.1 HMT-031 UMB1063 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum UMB1063 42 2544380 58.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/218/005/GCA_030218005.1_ASM3021800v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA970254 43765 SAMN34996482 ASM3021800v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:08.277 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 36.1x 96.57 97.62 0 99.91 0.61 GCF_030218005.1 JASOOZ01 2197 2263 2263 13 3 49 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_030218065.1 HMT-476 UMB1050 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava UMB1050 229 2332356 49.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/218/065/GCA_030218065.1_ASM3021806v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava_A PRJNA970254 28449 SAMN34996481 ASM3021806v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:08.263 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 289.8x 95.07 99.92 1.36 100 0.56 GCF_030218065.1 JASOPA01 2171 2256 2256 28 3 53 1 Neisseria_subflava_homd_HMT_476 GCA_030218125.1 HMT-718 UMB1048 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae UMB1048 236 2039267 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/218/125/GCA_030218125.1_ASM3021812v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp014931275 PRJNA970254 3046322 SAMN34996480 ASM3021812v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:08.253 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 644.8x 99.89 2.36 100 1.7 GCF_030218125.1 JASOPB01 1881 1968 1968 28 6 52 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_030218345.1 HMT-142 UMB0889A Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-142 Staphylococcus pettenkoferi UMB0889A 14 2475105 38.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/218/345/GCA_030218345.1_ASM3021834v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus pettenkoferi PRJNA970254 170573 SAMN34996466 ASM3021834v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:08.060 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 193.2x 96.06 98.9 1.8 99.98 0.05 GCF_030218345.1 JASOPP01 2350 2450 2450 45 4 50 1 Staphylococcus_pettenkoferi_homd_HMT_142 GCA_030218885.1 HMT-076 UMB0017A Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri UMB0017A 43 2557073 32.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/218/885/GCA_030218885.1_ASM3021888v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA970254 1292 SAMN34996440 ASM3021888v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:07.783 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 1.3x 99.73 0.4 100 1.05 GCF_030218885.1 JASOQP01 2468 2559 2559 52 2 36 1 GCA_030219045.1 HMT-552 UMB8269 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum UMB8269 58 2609401 63.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/219/045/GCA_030219045.1_ASM3021904v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA970254 33010 SAMN34996429 ASM3021904v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:07.650 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 273.6x 98.76 100 0 100 0.17 GCF_030219045.1 JASORA01 2346 2422 2422 23 5 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_030219075.1 HMT-188 UMB8972 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria UMB8972 177 2612471 56.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/219/075/GCA_030219075.1_ASM3021907v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA970254 172042 SAMN34996430 ASM3021907v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:07.660 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 260.7x 97.31 98.34 1.99 100 0.02 GCF_030219075.1 JASOQZ01 2267 2335 2335 13 4 50 1 Rothia_aeria_homd_HMT_188 GCA_030219125.1 HMT-524 UMB10101 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica UMB10101 205 2124476 39.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/219/125/GCA_030219125.1_ASM3021912v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJNA970254 39777 SAMN34996420 ASM3021912v1 Contig SPAdes v. v3.14.1 2023-05-08T11:18:07.547 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 745.8x 97.04 100 0.14 100 0.27 GCF_030219125.1 JASORJ01 1858 1933 1933 20 4 50 1 Veillonella_atypica_homd_HMT_524 GCA_030219165.1 HMT-552 UMB9886 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum UMB9886 65 2625503 63.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/219/165/GCA_030219165.1_ASM3021916v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA970254 33010 SAMN34998854 ASM3021916v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:10.013 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 269.2x 96.39 100 0.22 99.99 0.08 GCF_030219165.1 JASORM01 2336 2415 2415 26 3 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_030219185.1 HMT-552 UMB9891 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum UMB9891 69 2623717 63.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/219/185/GCA_030219185.1_ASM3021918v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA970254 33010 SAMN34998855 ASM3021918v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:10.027 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 245.4x 96.4 100 0.66 99.99 0.08 GCF_030219185.1 JASORL01 2333 2414 2414 28 3 49 1 Cutibacterium_avidum_homd_HMT_552 GCA_030219285.1 HMT-109 UMB0065 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-109 Peptoniphilus harei UMB0065 19 1962376 34.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/219/285/GCA_030219285.1_ASM3021928v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A genitalis PRJNA970254 54005 SAMN34998838 ASM3021928v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:09.840 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 335.7x 88.97 99.3 0 99.99 0.02 GCF_030219285.1 JASOSC01 1851 1927 1927 36 3 36 1 Peptoniphilus_harei_homd_HMT_109 GCA_030219305.1 HMT-556 PLW0727 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-556 Prevotella bivia PLW0727 2 2427673 39.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/219/305/GCA_030219305.1_ASM3021930v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella bivia PRJNA977105 28125 SAMN35450423 ASM3021930v1 Complete Genome Unicycler v. 0.4.9; fly v. 2.9.1 2023-05-29T03:37:04.817 China: Shenzhen Illumina NovaSeq; Oxford Nanopore PromethION Shenzhen University 1277.0x 98.94 99.66 0 99.98 0.05 GCF_030219305.1 2061 2131 2131 7 12 50 1 Prevotella_bivia_homd_HMT_556 GCA_030220105.1 HMT-117 SDAQ-1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-117 Staphylococcus cohnii SDAQ-1 3 2798844 32.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/220/105/GCA_030220105.1_ASM3022010v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus cohnii PRJNA971568 29382 SAMN35037007 ASM3022010v1 Complete Genome SOAPdenovo v. 2 2023-05-11T10:11:03.586 China:Shandong DNBSEQ; PacBio RSII Qingdao Agricultural University 463.0x 99.45 99.45 0 100 0.18 GCF_030220105.1 2637 2766 2766 49 19 60 1 Staphylococcus_cohnii_homd_HMT_117 GCA_030223345.1 HMT-552 UMB6759 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum UMB6759 35 2469693 63.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/223/345/GCA_030223345.1_ASM3022334v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA970254 33010 SAMN34998842 ASM3022334v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:09.883 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 242.5x 98.76 100 0.66 100 0.05 GCF_030223345.1 JASORY01 2230 2302 2302 21 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_030223365.1 HMT-188 UMB0589 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria UMB0589 23 2566350 56.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/223/365/GCA_030223365.1_ASM3022336v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA970254 172042 SAMN34998836 ASM3022336v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:09.817 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 273.8x 99.17 98.34 0 100 0.03 GCF_030223365.1 JASOSE01 2223 2289 2289 13 4 48 1 Rothia_aeria_homd_HMT_188 GCA_030223695.1 HMT-602 UMB0191 Named Cultivated Oral (Abundance: Scarce) HMT-602 Slackia exigua UMB0191 20 1915680 62.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/223/695/GCA_030223695.1_ASM3022369v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia;s__Slackia exigua PRJNA970254 84109 SAMN34998819 ASM3022369v1 Contig SPAdes v. 3.14.1 2023-05-08T14:01:09.616 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 424.7x 98.05 100 0 98.68 0.67 GCF_030223695.1 JASOSV01 1611 1672 1672 9 3 48 1 Slackia_exigua_homd_HMT_602 GCA_030223725.1 HMT-836 UMB12383B Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-836 Peptoniphilus lacrimalis UMB12383B 40 1786004 30.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/223/725/GCA_030223725.1_ASM3022372v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacrimalis PRJNA970254 33031 SAMN34998816 ASM3022372v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:09.577 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 212.7x 98.54 99.3 0 99.8 0.43 GCF_030223725.1 JASOSY01 1703 1771 1771 23 3 41 1 Peptoniphilus_lacrimalis_homd_HMT_836 GCA_030223765.1 HMT-836 UMB12383A Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-836 Peptoniphilus lacrimalis UMB12383A 45 1786622 30.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/223/765/GCA_030223765.1_ASM3022376v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacrimalis PRJNA970254 33031 SAMN34998815 ASM3022376v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:09.567 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 334.1x 98.54 99.3 0 99.8 0.43 GCF_030223765.1 JASOSZ01 1702 1770 1770 23 3 41 1 Peptoniphilus_lacrimalis_homd_HMT_836 GCA_030223965.1 HMT-109 UMB10226A Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-109 Peptoniphilus harei UMB10226A 18 1966886 34.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/223/965/GCA_030223965.1_ASM3022396v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A genitalis PRJNA970254 54005 SAMN34998802 ASM3022396v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:09.413 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 284.9x 99.3 0 99.82 0.16 GCF_030223965.1 JASOTL01 1794 1873 1873 37 4 37 1 GCA_030223985.1 HMT-109 UMB10226B Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-109 Peptoniphilus harei UMB10226B 18 1967478 34.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/223/985/GCA_030223985.1_ASM3022398v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A genitalis PRJNA970254 54005 SAMN34998803 ASM3022398v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:09.423 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 302.5x 89.03 99.3 0 99.85 0.16 GCF_030223985.1 JASOTK01 1791 1870 1870 37 4 37 1 Peptoniphilus_harei_homd_HMT_109 GCA_030224105.1 HMT-198 UMB8704B Named Cultivated Oral (Abundance: Scarce) HMT-198 Alloscardovia omnicolens UMB8704B 29 1852113 46.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/224/105/GCA_030224105.1_ASM3022410v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia;s__Alloscardovia omnicolens PRJNA970254 419015 SAMN34998797 ASM3022410v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:09.363 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 313.6x 98.67 99.94 0 96.32 0.04 GCF_030224105.1 JASOTQ01 1583 1640 1640 8 3 45 1 Alloscardovia_omnicolens_homd_HMT_198 GCA_030224605.1 HMT-072 UMB6355 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum UMB6355 61 2596233 59.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/224/605/GCA_030224605.1_ASM3022460v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA970254 43770 SAMN34998772 ASM3022460v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:09.103 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 126.7x 98.18 99.67 0.31 99.99 0.02 GCF_030224605.1 JASOUP01 2382 2445 2445 8 2 52 1 Corynebacterium_striatum_homd_HMT_072 GCA_030224835.1 HMT-128 UMB1283 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis UMB1283 21 2553256 33.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/224/835/GCA_030224835.1_ASM3022483v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA970254 28035 SAMN34998761 ASM3022483v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:08.980 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 255.6x 99.95 99.61 0 100 0.1 GCF_030224835.1 JASOVA01 2406 2546 2546 85 1 53 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_030225245.1 HMT-076 UMB0026 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri UMB0026 31 2463277 32.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/225/245/GCA_030225245.1_ASM3022524v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA970254 1292 SAMN34998740 ASM3022524v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:08.757 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 486.5x 96.03 99.73 0.31 100 0.09 GCF_030225245.1 JASOVV01 2350 2440 2440 49 2 38 1 Staphylococcus_warneri_homd_HMT_076 GCA_030225305.1 HMT-076 UMB0017B Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri UMB0017B 31 2541978 32.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/225/305/GCA_030225305.1_ASM3022530v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA970254 1292 SAMN34998738 ASM3022530v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:08.736 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 308.3x 99.63 99.73 0.28 100 0.05 GCF_030225305.1 JASOVX01 2453 2536 2536 52 1 29 1 Staphylococcus_warneri_homd_HMT_076 GCA_030225585.1 HMT-046 UMB750A.1 Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum UMB750A.1 268 1675671 30.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/225/585/GCA_030225585.1_ASM3022558v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJNA970254 29391 SAMN35153986 ASM3022558v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:08.440 USA: Maywood, IL bladder urine Illumina NextSeq Loyola University Chicago 9.9x 97.81 94.35 2.78 95.16 3.48 GCF_030225585.1 JASOZM01 1483 1542 1542 26 2 30 1 Gemella_morbillorum_homd_HMT_046 GCA_030225625.1 HMT-046 UMB750B.1 Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum UMB750B.1 106 1711998 30.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/225/625/GCA_030225625.1_ASM3022562v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJNA970254 29391 SAMN35153988 ASM3022562v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:08.463 USA: Maywood, IL bladder urine Illumina NextSeq Loyola University Chicago 11.9x 97.82 98.42 1.15 99.97 0.81 GCF_030225625.1 JASOZK01 1552 1614 1614 27 2 32 1 Gemella_morbillorum_homd_HMT_046 GCA_030226005.1 HMT-644 UMB9934 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius UMB9934 36 1906605 37.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/226/005/GCA_030226005.1_ASM3022600v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA970254 1338 SAMN34998707 ASM3022600v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:08.403 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 214.8x 98.37 99.88 0 100 0.25 GCF_030226005.1 JASOXC01 1817 1899 1899 34 3 44 1 Streptococcus_intermedius_homd_HMT_644 GCA_030226025.1 HMT-198 UMB9969 Named Cultivated Oral (Abundance: Scarce) HMT-198 Alloscardovia omnicolens UMB9969 31 1787092 46.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/226/025/GCA_030226025.1_ASM3022602v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia;s__Alloscardovia omnicolens PRJNA970254 419015 SAMN34998709 ASM3022602v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:08.427 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 334.8x 98.62 99.94 0.23 96.89 0.04 GCF_030226025.1 JASOXA01 1498 1559 1559 11 2 47 1 Alloscardovia_omnicolens_homd_HMT_198 GCA_030226275.1 HMT-682 UMB7973B Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa UMB7973B 204 2524525 51.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/226/275/GCA_030226275.1_ASM3022627v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa PRJNA970254 488 SAMN34998693 ASM3022627v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:08.243 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 521.2x 99.68 0.56 100 0.08 GCF_030226275.1 JASOXQ01 2231 2303 2303 17 3 51 1 Neisseria_mucosa_homd_HMT_682 GCA_030227185.1 HMT-019 MSK077 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK077 52 2463636 59.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/227/185/GCA_030227185.1_ASM3022718v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346712 ASM3022718v1 Contig SPAdes v. 3.15.3 2023-05-24T14:12:05.927 USA: Durham, NC nasal swab Illumina NovaSeq Duke University 102.0x 96.85 99.78 0.22 100 0.02 GCF_030227185.1 JASPIU01 2284 2346 2346 7 3 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_030227205.1 HMT-060 MSK127 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK127 11 2384363 55.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/227/205/GCA_030227205.1_ASM3022720v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346741 ASM3022720v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.217 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 106.0x 96.01 99.67 0 100 0.13 GCF_030227205.1 JASPHR01 2152 2212 2212 6 4 49 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030227215.1 HMT-328 MSK081 Named Cultivated Skin (Abundance: Scarce) HMT-328 Corynebacterium mastitidis MSK081 19 2368744 68.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/227/215/GCA_030227215.1_ASM3022721v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium mastitidis PRJNA804245 161890 SAMN35346716 ASM3022721v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.967 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 106.0x 96.79 99.89 0.62 99.99 0.06 GCF_030227215.1 JASPIQ01 2257 2322 2322 10 3 51 1 Corynebacterium_mastitidis_homd_HMT_328 GCA_030227275.1 HMT-019 MSK075 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK075 28 2510014 59.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/227/275/GCA_030227275.1_ASM3022727v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346710 ASM3022727v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.907 USA: Durham, NC nasal swab Illumina NovaSeq Duke University 100.0x 96.56 99.78 0 99.99 0.2 GCF_030227275.1 JASPIW01 2310 2378 2378 7 6 54 1 Corynebacterium_accolens_homd_HMT_019 GCA_030227325.1 HMT-060 MSK080 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK080 37 2255576 55.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/227/325/GCA_030227325.1_ASM3022732v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346715 ASM3022732v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.957 USA: Durham, NC nasal swab Illumina NovaSeq Duke University 112.0x 98.33 99.67 0.11 100 0.3 GCF_030227325.1 JASPIR01 2011 2068 2068 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030227545.1 HMT-843 UMB12087A.2 Named Cultivated Vaginal (Abundance: Medium) HMT-843 Dialister micraerophilus UMB12087A.2 104 1407888 35.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/227/545/GCA_030227545.1_ASM3022754v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister micraerophilus PRJNA970254 309120 SAMN35153980 ASM3022754v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:08.380 USA: Maywood, IL bladder urine Illumina NextSeq Loyola University Chicago 18.1x 98.76 99.91 1.41 98.51 0.21 GCF_030227545.1 JASOZS01 1299 1372 1372 29 0 43 1 Dialister_micraerophilus_homd_HMT_843 GCA_030227555.1 HMT-542 UMB10161.3 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius UMB10161.3 76 1992791 35.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/227/555/GCA_030227555.1_ASM3022755v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJNA970254 1261 SAMN35153971 ASM3022755v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:08.290 USA: Maywood, IL bladder urine Illumina NextSeq Loyola University Chicago 206.7x 99.16 100 0 100 0.07 GCF_030227555.1 JASPAB01 1797 1848 1848 34 2 14 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_030228345.1 HMT-076 UMB0030B Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri UMB0030B 22 2468379 32.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/345/GCA_030228345.1_ASM3022834v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA970254 1292 SAMN35153945 ASM3022834v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:07.993 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 143.9x 96.02 99.73 0 100 0.06 GCF_030228345.1 JASPBB01 2363 2459 2459 49 4 42 1 Staphylococcus_warneri_homd_HMT_076 GCA_030228465.1 HMT-073 UMB5615B Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis UMB5615B 15 1898495 42.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/465/GCA_030228465.1_ASM3022846v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA970254 2589788 SAMN35153930 ASM3022846v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:07.756 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 274.2x 96.01 99.66 0.34 99.97 0 GCF_030228465.1 JASPBQ01 1836 1911 1911 35 2 37 1 Streptococcus_australis_homd_HMT_073 GCA_030228535.1 HMT-843 UMB10230B.1 Named Cultivated Vaginal (Abundance: Medium) HMT-843 Dialister micraerophilus UMB10230B.1 35 1226292 35.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/535/GCA_030228535.1_ASM3022853v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister micraerophilus PRJNA970254 309120 SAMN35153976 ASM3022853v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:08.340 USA: Maywood, IL bladder urine Illumina NextSeq Loyola University Chicago 54.9x 98.94 99.91 0.66 99.92 0.63 GCF_030228535.1 JASOZW01 1130 1195 1195 20 0 44 1 Dialister_micraerophilus_homd_HMT_843 GCA_030228605.1 HMT-836 UMB10230B.2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-836 Peptoniphilus lacrimalis UMB10230B.2 74 1799428 30.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/605/GCA_030228605.1_ASM3022860v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacrimalis PRJNA970254 33031 SAMN35153974 ASM3022860v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:08.320 USA: Maywood, IL bladder urine Illumina NextSeq Loyola University Chicago 160.1x 98.47 99.3 0 99.78 0.81 GCF_030228605.1 JASOZY01 1665 1731 1731 24 5 36 1 Peptoniphilus_lacrimalis_homd_HMT_836 GCA_030228685.1 HMT-128 UMB10323 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis UMB10323 56 2546921 33.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/685/GCA_030228685.1_ASM3022868v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA970254 28035 SAMN34998654 ASM3022868v1 Contig SPAdes v. v3.14.1 2023-05-08T14:01:07.777 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 91.3x 99.42 99.61 0.04 100 0.05 GCF_030228685.1 JASOZB01 2374 2522 2522 85 4 58 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_030228805.1 HMT-060 MSK283 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK283 24 2334058 55.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/805/GCA_030228805.1_ASM3022880v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346778 ASM3022880v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.667 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 108.0x 96.24 99.67 0 100 0.02 GCF_030228805.1 JASPGG01 2103 2162 2162 6 3 49 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030228865.1 HMT-019 MSK079 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK079 64 2526505 59.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/865/GCA_030228865.1_ASM3022886v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346714 ASM3022886v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.947 USA: Durham, NC nasal swab Illumina NovaSeq Duke University 100.0x 97.02 99.78 0 99.99 0.08 GCF_030228865.1 JASPIS01 2347 2409 2409 7 3 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_030228895.1 HMT-019 MSK076 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK076 44 2462267 59.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/895/GCA_030228895.1_ASM3022889v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346711 ASM3022889v1 Contig SPAdes v. 3.15.3 2023-05-24T14:12:05.917 USA: Durham, NC nasal swab Illumina NovaSeq Duke University 102.0x 96.85 99.78 0 100 0.02 GCF_030228895.1 JASPIV01 2283 2345 2345 7 3 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_030228925.1 HMT-783 MSK194 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii MSK194 19 2438596 58.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/925/GCA_030228925.1_ASM3022892v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA804245 3377093 SAMN35346764 ASM3022892v1 Contig SPAdes v. 3.15.3 2023-05-24T14:12:06.460 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 103.0x 99.78 0 100 0.04 GCF_030228925.1 JASPGU01 2301 2366 2366 9 4 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_030228935.1 HMT-059 MSK124 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum MSK124 34 2442739 56.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/935/GCA_030228935.1_ASM3022893v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA804245 43769 SAMN35346739 ASM3022893v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.197 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 103.0x 97.46 99.67 0 99.99 0.05 GCF_030228935.1 JASPHT01 2196 2253 2253 6 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030228965.1 HMT-019 MSK091 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK091 44 2484696 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/965/GCA_030228965.1_ASM3022896v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346722 ASM3022896v1 Contig SPAdes v. 3.15.3 2023-05-24T14:12:06.027 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 101.0x 97.04 99.78 0 99.99 0.02 GCF_030228965.1 JASPIK01 2292 2354 2354 7 3 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_030229005.1 HMT-341 MSK104 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-341 Corynebacterium coyleae MSK104 72 2405598 61.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/005/GCA_030229005.1_ASM3022900v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium coyleae PRJNA804245 53374 SAMN35346730 ASM3022900v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.110 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 105.0x 97.55 97.94 0.31 99.99 0.02 GCF_030229005.1 JASPIC01 2263 2328 2328 8 4 52 1 Corynebacterium_coyleae_homd_HMT_341 GCA_030229025.1 HMT-019 MSK121 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK121 39 2506669 59.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/025/GCA_030229025.1_ASM3022902v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346736 ASM3022902v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.167 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 100.0x 96.53 99.78 0 99.98 0.3 GCF_030229025.1 JASPHW01 2310 2374 2374 7 3 53 1 Corynebacterium_accolens_homd_HMT_019 GCA_030229035.1 HMT-060 MSK305 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK305 27 2297976 55.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/035/GCA_030229035.1_ASM3022903v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346783 ASM3022903v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.713 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 110.0x 98.46 99.67 0.11 100 0.45 GCF_030229035.1 JASPGB01 2064 2123 2123 6 4 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229065.1 HMT-019 MSK161 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK161 29 2482201 59.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/065/GCA_030229065.1_ASM3022906v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346750 ASM3022906v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.307 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 101.0x 96.59 99.78 0 99.99 0.04 GCF_030229065.1 JASPHI01 2265 2330 2330 7 5 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030229105.1 HMT-059 MSK146 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum MSK146 30 2429658 56.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/105/GCA_030229105.1_ASM3022910v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA804245 43769 SAMN35346745 ASM3022910v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.257 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 104.0x 97.5 99.78 0 99.98 0.05 GCF_030229105.1 JASPHN01 2189 2247 2247 7 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030229145.1 HMT-060 MSK300 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK300 22 2425046 55.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/145/GCA_030229145.1_ASM3022914v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346782 ASM3022914v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.707 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 104.0x 96.08 99.67 0.89 100 0.15 GCF_030229145.1 JASPGC01 2217 2275 2275 6 3 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229165.1 HMT-060 MSK223 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK223 14 2343960 55.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/165/GCA_030229165.1_ASM3022916v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346773 ASM3022916v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.610 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 107.0x 96.08 99.67 0 100 0.02 GCF_030229165.1 JASPGL01 2094 2153 2153 6 3 49 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229185.1 HMT-060 MSK238 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK238 23 2346921 55.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/185/GCA_030229185.1_ASM3022918v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346774 ASM3022918v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.620 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 107.0x 96.14 99.52 0 100 0.02 GCF_030229185.1 JASPGK01 2115 2176 2176 6 5 49 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229195.1 HMT-060 MSK172 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK172 28 2405178 55.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/195/GCA_030229195.1_ASM3022919v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346755 ASM3022919v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.363 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 105.0x 96.02 99.67 0 100 0.08 GCF_030229195.1 JASPHD01 2166 2225 2225 6 4 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229285.1 HMT-019 MSK270 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK270 26 2509738 59.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/285/GCA_030229285.1_ASM3022928v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346775 ASM3022928v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.630 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 100.0x 96.51 99.78 0 99.99 0.05 GCF_030229285.1 JASPGJ01 2324 2390 2390 7 5 53 1 Corynebacterium_accolens_homd_HMT_019 GCA_030229305.1 HMT-060 MSK092 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK092 32 2278645 55.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/305/GCA_030229305.1_ASM3022930v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346723 ASM3022930v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.037 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 110.0x 98.44 99.67 0 99.99 0.01 GCF_030229305.1 JASPIJ01 2045 2103 2103 6 4 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229315.1 HMT-783 MSK163 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii MSK163 24 2445630 58.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/315/GCA_030229315.1_ASM3022931v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA804245 3377091 SAMN35346751 ASM3022931v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.316 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 103.0x 99.78 0 100 0.03 GCF_030229315.1 JASPHH01 2320 2385 2385 10 3 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_030229415.1 HMT-060 MSK168 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK168 29 2348004 55.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/415/GCA_030229415.1_ASM3022941v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346754 ASM3022941v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.353 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 107.0x 96.14 99.52 0 100 0.02 GCF_030229415.1 JASPHE01 2114 2174 2174 6 4 49 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229425.1 HMT-060 MSK188 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK188 16 2447609 55.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/425/GCA_030229425.1_ASM3022942v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346761 ASM3022942v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.427 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 103.0x 96.28 99.67 0 100 0.03 GCF_030229425.1 JASPGX01 2266 2324 2324 6 3 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229485.1 HMT-060 MSK141 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK141 20 2343838 55.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/485/GCA_030229485.1_ASM3022948v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346743 ASM3022948v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.237 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 107.0x 96.07 99.52 0 100 0.03 GCF_030229485.1 JASPHP01 2101 2159 2159 6 3 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229515.1 HMT-060 MSK184 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK184 18 2390091 55.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/515/GCA_030229515.1_ASM3022951v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346759 ASM3022951v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.407 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 105.0x 96.16 99.67 0 100 0.1 GCF_030229515.1 JASPGZ01 2159 2218 2218 6 3 49 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229545.1 HMT-033 MSK095 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-033 Corynebacterium appendicis MSK095 55 2155492 64.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/545/GCA_030229545.1_ASM3022954v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium appendicis PRJNA804245 163202 SAMN35346725 ASM3022954v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.057 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 117.0x 97.85 99.34 0.35 99.98 0.06 GCF_030229545.1 JASPIH01 2018 2086 2086 11 2 54 1 Corynebacterium_appendicis_homd_HMT_033 GCA_030229605.1 HMT-019 MSK125 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK125 89 2539945 59.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/605/GCA_030229605.1_ASM3022960v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346740 ASM3022960v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.207 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 99.0x 96.81 99.78 0 99.99 0.18 GCF_030229605.1 JASPHS01 2372 2435 2435 7 4 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_030229625.1 HMT-019 MSK099 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK099 91 2544134 59.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/625/GCA_030229625.1_ASM3022962v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346729 ASM3022962v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.100 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 99.0x 96.81 99.78 0 99.99 0.18 GCF_030229625.1 JASPID01 2383 2448 2448 7 4 53 1 Corynebacterium_accolens_homd_HMT_019 GCA_030229665.1 HMT-060 MSK110 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK110 29 2331903 55.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/665/GCA_030229665.1_ASM3022966v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346734 ASM3022966v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.147 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 108.0x 95.94 99.67 0 100 0.01 GCF_030229665.1 JASPHY01 2117 2175 2175 6 4 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229685.1 HMT-019 MSK109 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK109 60 2406417 59.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/685/GCA_030229685.1_ASM3022968v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346733 ASM3022968v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.137 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 105.0x 96.83 99.78 0 100 0.02 GCF_030229685.1 JASPHZ01 2220 2285 2285 7 6 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_030229765.1 HMT-783 MSK185 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii MSK185 31 2426866 58.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/765/GCA_030229765.1_ASM3022976v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA804245 3377092 SAMN35346760 ASM3022976v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.416 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 104.0x 99.71 0 99.99 0.18 GCF_030229765.1 JASPGY01 2320 2385 2385 10 3 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_030229785.1 HMT-060 MSK202 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK202 13 2308373 55.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/785/GCA_030229785.1_ASM3022978v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346767 ASM3022978v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.507 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 109.0x 96.1 99.67 0 99.99 0.02 GCF_030229785.1 JASPGR01 2103 2160 2160 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229805.1 HMT-019 MSK273 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK273 40 2479472 59.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/805/GCA_030229805.1_ASM3022980v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346776 ASM3022980v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.640 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 102.0x 97.11 99.78 0 99.99 0 GCF_030229805.1 JASPGI01 2279 2342 2342 7 3 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030229835.1 HMT-060 MSK198 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK198 20 2373608 55.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/835/GCA_030229835.1_ASM3022983v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346766 ASM3022983v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.483 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 106.0x 96.18 99.67 0 100 0.03 GCF_030229835.1 JASPGS01 2132 2192 2192 6 4 49 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030229925.1 HMT-059 MSK290 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum MSK290 25 2444083 56.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/925/GCA_030229925.1_ASM3022992v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA804245 43769 SAMN35346779 ASM3022992v1 Contig SPAdes v. 3.15.3 2023-05-24T14:12:06.677 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 103.0x 97.52 99.67 0.15 99.98 0.04 GCF_030229925.1 JASPGF01 2186 2243 2243 6 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030230405.1 HMT-128 UMB7933 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis UMB7933 34 2458711 33.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/230/405/GCA_030230405.1_ASM3023040v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJNA970254 28035 SAMN35153897 ASM3023040v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:07.390 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 39.4x 99.44 96.73 0 99.98 0.05 GCF_030230405.1 JASPCX01 2305 2419 2419 80 4 29 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_030230475.1 HMT-198 UMB1308A Named Cultivated Oral (Abundance: Scarce) HMT-198 Alloscardovia omnicolens UMB1308A 11 1799614 46.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/230/475/GCA_030230475.1_ASM3023047v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia;s__Alloscardovia omnicolens PRJNA970254 419015 SAMN35153877 ASM3023047v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:07.166 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 381.8x 98.57 100 0 97.52 0.07 GCF_030230475.1 JASPDP01 1490 1546 1546 10 0 45 1 Alloscardovia_omnicolens_homd_HMT_198 GCA_030230485.1 HMT-116 UMB6688.2 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis UMB6688.2 23 2500385 32.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/230/485/GCA_030230485.1_ASM3023048v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJNA970254 29388 SAMN35153889 ASM3023048v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:07.303 USA: Maywood, IL bladder urine Illumina NextSeq Loyola University Chicago 26.7x 98.9 99.81 0.36 100 0.5 GCF_030230485.1 JASPDF01 2374 2474 2474 50 4 45 1 Staphylococcus_capitis_homd_HMT_116 GCA_030230925.1 HMT-076 UMB0046.C Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri UMB0046.C 27 2556987 32.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/230/925/GCA_030230925.1_ASM3023092v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA970254 1292 SAMN35153866 ASM3023092v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:07.043 USA: Maywood, IL urine Illumina NextSeq Loyola University Chicago 19.9x 99.57 99.72 0.06 99.99 0.24 GCF_030230925.1 JASPEA01 2499 2585 2585 49 2 34 1 Staphylococcus_warneri_homd_HMT_076 GCA_030231045.1 HMT-072 MSK002 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum MSK002 140 2934008 59.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/231/045/GCA_030231045.1_ASM3023104v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA804245 43770 SAMN35346677 ASM3023104v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.557 USA: Durham, NC blood Illumina NovaSeq Duke University 86.0x 98.67 99.23 0.53 99.99 0.2 GCF_030231045.1 JASPKC01 2676 2746 2746 10 3 56 1 Corynebacterium_striatum_homd_HMT_072 GCA_030232045.1 HMT-060 MSK311 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK311 10 2307781 55.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/045/GCA_030232045.1_ASM3023204v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346786 ASM3023204v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.743 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 109.0x 96.1 99.67 0 99.99 0.02 GCF_030232045.1 JASPFY01 2102 2159 2159 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030232105.1 HMT-072 MSK065 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum MSK065 156 2977329 59.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/105/GCA_030232105.1_ASM3023210v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA804245 43770 SAMN35346703 ASM3023210v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.833 USA: Durham, NC Endotracheal aspirate Illumina NovaSeq Duke University 84.0x 98.75 99.67 0.79 99.99 1.79 GCF_030232105.1 JASPJD01 2800 2869 2869 9 3 56 1 Corynebacterium_striatum_homd_HMT_072 GCA_030232125.1 HMT-783 MSK071 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii MSK071 81 2509550 58.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/125/GCA_030232125.1_ASM3023212v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA804245 3377090 SAMN35346706 ASM3023212v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.866 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 100.0x 99.78 0.44 99.99 0.32 GCF_030232125.1 JASPJA01 2416 2482 2482 9 4 52 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_030232145.1 HMT-019 MSK070 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK070 27 2451769 59.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/145/GCA_030232145.1_ASM3023214v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346705 ASM3023214v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.853 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 103.0x 96.71 99.78 0 100 0.03 GCF_030232145.1 JASPJB01 2237 2301 2301 7 4 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030232165.1 HMT-072 MSK060 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum MSK060 165 2913468 59.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/165/GCA_030232165.1_ASM3023216v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA804245 43770 SAMN35346701 ASM3023216v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.813 USA: Durham, NC skin Illumina NovaSeq Duke University 86.0x 98.72 99.67 0.66 99.98 0.1 GCF_030232165.1 JASPJF01 2680 2751 2751 9 6 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_030232205.1 HMT-072 MSK064 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum MSK064 136 2893056 59.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/205/GCA_030232205.1_ASM3023220v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA804245 43770 SAMN35346702 ASM3023220v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.823 USA: Durham, NC bronchoalveolar lavage Illumina NovaSeq Duke University 87.0x 98.66 99.34 0.12 99.99 0.26 GCF_030232205.1 JASPJE01 2654 2722 2722 9 3 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_030232215.1 HMT-072 MSK059 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum MSK059 86 2636129 59.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/215/GCA_030232215.1_ASM3023221v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA804245 43770 SAMN35346700 ASM3023221v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.803 USA: Durham, NC Synovial fluid Illumina NovaSeq Duke University 95.0x 98.05 99.67 0.31 99.98 0.19 GCF_030232215.1 JASPJG01 2439 2505 2505 8 3 54 1 Corynebacterium_striatum_homd_HMT_072 GCA_030232245.1 HMT-072 MSK050 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum MSK050 83 2686098 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/245/GCA_030232245.1_ASM3023224v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA804245 43770 SAMN35346699 ASM3023224v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.793 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 94.0x 98.21 99.67 0.31 99.98 0.29 GCF_030232245.1 JASPJH01 2502 2568 2568 8 4 53 1 Corynebacterium_striatum_homd_HMT_072 GCA_030232305.1 HMT-341 MSK033 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-341 Corynebacterium coyleae MSK033 73 2452523 61.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/305/GCA_030232305.1_ASM3023230v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium coyleae PRJNA804245 53374 SAMN35346690 ASM3023230v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.690 USA: Durham, NC urine Illumina NovaSeq Duke University 103.0x 97.42 97.8 0 99.97 0.18 GCF_030232305.1 JASPJQ01 2301 2366 2366 8 4 52 1 Corynebacterium_coyleae_homd_HMT_341 GCA_030232325.1 HMT-031 MSK038 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum MSK038 23 2520567 58.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/325/GCA_030232325.1_ASM3023232v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJNA804245 43765 SAMN35346694 ASM3023232v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.740 USA: Durham, NC urine Illumina NovaSeq Duke University 100.0x 98.82 100 0 100 0.1 GCF_030232325.1 JASPJM01 2183 2257 2257 14 4 55 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_030232395.1 HMT-341 MSK028 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-341 Corynebacterium coyleae MSK028 73 2404989 61.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/395/GCA_030232395.1_ASM3023239v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium coyleae PRJNA804245 53374 SAMN35346688 ASM3023239v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.670 USA: Durham, NC urine Illumina NovaSeq Duke University 105.0x 97.55 97.94 0.09 99.99 0.02 GCF_030232395.1 JASPJS01 2260 2325 2325 8 4 52 1 Corynebacterium_coyleae_homd_HMT_341 GCA_030232485.1 HMT-072 MSK005 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum MSK005 154 2818014 59.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/485/GCA_030232485.1_ASM3023248v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA804245 43770 SAMN35346680 ASM3023248v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.593 USA: Durham, NC blood Illumina NovaSeq Duke University 89.0x 98.7 99.67 0.53 99.98 0.03 GCF_030232485.1 JASPKA01 2586 2657 2657 10 4 56 1 Corynebacterium_striatum_homd_HMT_072 GCA_030232565.1 HMT-060 MSK037 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK037 33 2272229 55.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/565/GCA_030232565.1_ASM3023256v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346693 ASM3023256v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.727 USA: Durham, NC Endotracheal aspirate Illumina NovaSeq Duke University 111.0x 98.51 99.67 0.33 100 0.33 GCF_030232565.1 JASPJN01 2041 2100 2100 6 5 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030232605.1 HMT-060 MSK314 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK314 21 2344324 55.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/605/GCA_030232605.1_ASM3023260v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346787 ASM3023260v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.753 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 107.0x 96.07 99.52 0 100 0.03 GCF_030232605.1 JASPFX01 2097 2156 2156 6 4 48 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030232685.1 HMT-060 MSK164 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK164 14 2364133 55.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/685/GCA_030232685.1_ASM3023268v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346752 ASM3023268v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.327 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 106.0x 95.99 99.67 0 100 0.06 GCF_030232685.1 JASPHG01 2139 2196 2196 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030232755.1 HMT-019 MSK096 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens MSK096 41 2485091 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/755/GCA_030232755.1_ASM3023275v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA804245 38284 SAMN35346726 ASM3023275v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.067 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 101.0x 97.03 99.78 0 99.99 0.02 GCF_030232755.1 JASPIG01 2294 2358 2358 7 3 53 1 Corynebacterium_accolens_homd_HMT_019 GCA_030232785.1 HMT-060 MSK118 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK118 13 2307282 55.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/785/GCA_030232785.1_ASM3023278v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346735 ASM3023278v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.157 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 109.0x 96.1 99.67 0 99.99 0.02 GCF_030232785.1 JASPHX01 2101 2158 2158 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030232805.1 HMT-072 MSK067 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum MSK067 144 2837292 59.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/805/GCA_030232805.1_ASM3023280v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA804245 43770 SAMN35346704 ASM3023280v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:05.843 USA: Durham, NC Endotracheal aspirate Illumina NovaSeq Duke University 89.0x 98.66 99.67 0.09 100 0.11 GCF_030232805.1 JASPJC01 2614 2682 2682 8 4 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_030232845.1 HMT-060 MSK166 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum MSK166 29 2360727 55.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/845/GCA_030232845.1_ASM3023284v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA804245 37637 SAMN35346753 ASM3023284v1 Scaffold SPAdes v. 3.15.3 2023-05-24T14:12:06.340 Botswana: Gaborone nasopharyngeal swab Illumina NovaSeq Duke University 107.0x 96.16 99.22 0 100 0.05 GCF_030232845.1 JASPHF01 2167 2224 2224 6 3 47 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030233945.1 HMT-073 UMB5615A Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis UMB5615A 15 1899335 42.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/233/945/GCA_030233945.1_ASM3023394v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus xiaochunlingii PRJNA970254 2589788 SAMN35153887 ASM3023394v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:07.280 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 86.8x 96.01 99.66 0.34 99.97 0 GCF_030233945.1 JASPDH01 1836 1920 1920 36 4 43 1 Streptococcus_australis_homd_HMT_073 GCA_030234045.1 HMT-354 UMB6473-AN360BR Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis UMB6473-AN360BR 46 2424716 62.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/234/045/GCA_030234045.1_ASM3023404v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJNA970254 36740 SAMN35153853 ASM3023404v1 Contig SPAdes v. v3.14.1 2023-05-18T09:46:06.886 USA: Maywood, IL Illumina NextSeq Loyola University Chicago 260.3x 95.44 94.15 0.29 99.98 0.47 GCF_030234045.1 JASPEM01 2135 2194 2194 7 4 47 1 Dermabacter_hominis_homd_HMT_354 GCA_030236405.1 HMT-791 OGSA_21 Named Cultivated Skin (Abundance: Medium) HMT-791 Cutibacterium namnetense OGSA_21 13 2374308 60.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/236/405/GCA_030236405.1_ASM3023640v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium namnetense PRJNA939515 1574624 SAMN33482205 ASM3023640v1 Contig SPAdes v. 3.7 2023-02-28T09:00:17.596 Italy: Milan Forehead healthy skin Illumina HiSeq IRCCS Ospedale Galeazzi - SantAmbrogio 30.0x 99.98 99.01 0 99.99 0.1 GCF_030236405.1 JARJOC01 2185 2260 2260 22 3 49 1 Cutibacterium_namnetense_homd_HMT_791 GCA_030238465.1 HMT-837 CCUG 42621 Named Cultivated Vaginal (Abundance: Medium) HMT-837 Sneathia sanguinegens CCUG 42621 48 1334124 27.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/238/465/GCA_030238465.1_ASM3023846v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia;s__Sneathia sanguinegens PRJNA46877 40543 SAMN35559070 ASM3023846v1 Scaffold Newbler v. 2.8 2023-06-01T15:17:05.278 Sweden: Goteborg Human amniotic fluid 454 Virginia Commonwealth University 20.0x 98.18 98.88 0.16 91.69 1.22 GCF_030238465.1 JASSPP01 1379 1434 1434 9 7 38 1 Sneathia_sanguinegens_homd_HMT_837 GCA_030238485.1 HMT-844 CCUG 52976 Named Cultivated Vaginal (Abundance: Medium) HMT-844 Sneathia vaginalis CCUG 52976 80 1311068 28.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/238/485/GCA_030238485.1_ASM3023848v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia;s__Sneathia vaginalis PRJNA46877 187101 SAMN35558468 ASM3023848v1 Scaffold Newbler v. 2.8 2023-06-01T15:01:05.711 France: Strasbourg human blood 454 Virginia Commonwealth University 14.0x 98.33 95.51 0 91.84 1.28 GCF_030238485.1 JASSPO01 1437 1494 1494 14 3 39 1 Sneathia_vaginalis_homd_HMT_844 GCA_030239395.1 HMT-791 OGSA_30 Named Cultivated Skin (Abundance: Medium) HMT-791 Cutibacterium namnetense OGSA_30 20 2397796 60.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/239/395/GCA_030239395.1_ASM3023939v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium namnetense PRJNA939515 1574624 SAMN33482214 ASM3023939v1 Contig SPAdes v. 3.7 2023-02-28T09:00:17.716 Italy: Milan Forehead healthy skin Illumina HiSeq IRCCS Ospedale Galeazzi - SantAmbrogio 30.0x 99.43 99.01 0 99.99 0.13 GCF_030239395.1 JARJNT01 2217 2293 2293 23 3 49 1 Cutibacterium_namnetense_homd_HMT_791 GCA_030239425.1 HMT-791 OGSA_28 Named Cultivated Skin (Abundance: Medium) HMT-791 Cutibacterium namnetense OGSA_28 21 2399123 60.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/239/425/GCA_030239425.1_ASM3023942v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium namnetense PRJNA939515 1574624 SAMN33482212 ASM3023942v1 Contig SPAdes v. 3.7 2023-02-28T09:00:17.683 Italy: Milan Forehead healthy skin Illumina HiSeq IRCCS Ospedale Galeazzi - SantAmbrogio 30.0x 99.44 99.01 0 99.99 0.12 GCF_030239425.1 JARJNV01 2217 2293 2293 23 3 49 1 Cutibacterium_namnetense_homd_HMT_791 GCA_030252365.1 HMT-619 LyEC02 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis LyEC02 1 2406591 48.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/252/365/GCA_030252365.1_ASM3025236v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA978971 837 SAMN35563277 ASM3025236v1 Complete Genome SOAPdenovo v. JAN-2023 2023-06-02T02:21:03.380 China: Luoyang tissue: esophageal cancer patient Illumina NovaSeq; PacBio Sequel Henan University of Science and Technology Affiliated First Hospital 100.0x 98.42 99.92 0 99.99 0.04 GCF_030252365.1 2023 2097 2097 11 11 51 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_030253495.1 HMT-645 F0345 Named Cultivated Oral (Abundance: Low) HMT-645 Actinomyces israelii F0345 1 3980311 71.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/253/495/GCA_030253495.1_ASM3025349v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces israelii PRJNA957798 1659 SAMN34266293 ASM3025349v1 Complete Genome Trycycler v. unknown; SPAdes v. unknown 2023-04-20T15:27:03.677 missing human oral cavity Illumina; Oxford Nanopore MinION University of Washington, Mougous Lab 66.0x 98.52 100 1.72 100 0.83 GCF_030253495.1 3248 3330 3330 18 6 57 1 Actinomyces_israelii_homd_HMT_645 GCA_030253515.1 HMT-488 ML1 Unnamed Cultivated Oral (Abundance: Low) HMT-488 Nanosynbacter fur ML1 1 823929 51.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/253/515/GCA_030253515.1_ASM3025351v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter;s__Nanosynbacter lyticus_A PRJNA957798 2093824 SAMN34266292 ASM3025351v1 Complete Genome Trycycler v. unknown; SPAdes v. unknown 2023-04-20T15:27:03.663 USA: Seattle Human dental plaque Illumina; Oxford Nanopore MinION University of Washington, Mougous Lab 5.0x 63.68 0.85 99.63 0.13 GCF_030253515.1 850 900 900 4 3 43 0 Nanosynbacter_fur_homd_HMT_488 GCA_030253535.1 HMT-349 ML1 Phylotype Uncultivated Oral (Abundance: Medium) HMT-349 Saccharimonas sp. HMT-349 ML1 1 864133 49.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/253/535/GCA_030253535.1_ASM3025353v1 d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas;s__Saccharimonas sp905371715 PRJNA957798 3043284 SAMN34266291 ASM3025353v1 Complete Genome 2023-04-20T15:27:03.646 USA: Seattle Human dental plaque University of Washington, Mougous Lab 65.43 0.93 98.94 0.63 GCF_030253535.1 856 909 909 3 3 47 0 Saccharimonas_sp_HMT_349_homd_HMT_349 GCA_030264095.1 HMT-120 M1691_10 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus M1691_10 3 2471657 32.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/264/095/GCA_030264095.1_ASM3026409v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA980142 1283 SAMN35621247 ASM3026409v1 Complete Genome Unicycler v. 0.4.8 2023-06-05T10:19:04.430 Switzerland milk Illumina NovaSeq; Oxford Nanopore MinION University of Bern 75.0x 97.38 99.62 0.08 99.99 0.02 GCF_030264095.1 2394 2555 2555 78 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_030272855.1 HMT-578 SC1 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus SC1 11 1973970 42.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/272/855/GCA_030272855.1_ASM3027285v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp030272855 PRJNA917188 3018031 SAMN32527081 ASM3027285v1 Contig SPAdes v. 3.13.0 2023-01-01T16:58:03.417 Germany Illumina MiSeq University Hospital Dresden 48.0x 100 0 99.99 0.09 GCF_030272855.1 JAQCMU01 1898 1978 1978 32 5 42 1 Streptococcus_cristatus_homd_HMT_578 GCA_030284685.1 HMT-755 VTCC 12812 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius VTCC 12812 29 2156728 39.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/284/685/GCA_030284685.1_ASM3028468v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus raffinosi PRJNA981656 3053355 SAMN35682239 ASM3028468v1 Scaffold SPAdes v. 3.15.3 2023-06-09T01:22:19.073 Viet Nam: Ha Noi Breast milk Illumina NovaSeq VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi 460.0x 99.88 0.19 100 0.01 GCF_030284685.1 JASUZV01 1987 2096 2096 66 3 39 1 Streptococcus_salivarius_homd_HMT_755 GCA_030294905.1 HMT-686 LP13 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans LP13 1 2094589 36.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/294/905/GCA_030294905.1_ASM3029490v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJDB1573 1441364 SAMD00000013 ASM3029490v1 Complete Genome newbler v. 2.6 2023-02-03T01:00:47.103 Japan School of Dentistry at Matsudo 54.0x 99.28 100 0 100 0.12 GCF_030294905.1 1956 2064 2064 27 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_030295285.1 HMT-114 TP-CG7 Named Cultivated Skin (Abundance: High) HMT-114 Cutibacterium granulosum TP-CG7 2 2179712 64.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/295/285/GCA_030295285.1_ASM3029528v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium granulosum PRJDB14093 33011 SAMD00517775 ASM3029528v1 Complete Genome Unicycler v. 0.4.7 2023-02-03T01:01:22.206 Japan:Tokyo Acne pustule DNBSEQ-G400; GridION Department of Clinical Microbiology, Tokyo University of Pharmacy and Life Sciences 1633.0x 97.01 99.01 0.99 98.75 0.23 GCF_030295285.1 1838 1911 1911 19 6 47 1 Cutibacterium_granulosum_homd_HMT_114 GCA_030295305.1 HMT-530 TP-CU426 Named Cultivated Nasal (Abundance: High) HMT-530 Cutibacterium acnes TP-CU426 2 2526071 60.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/295/305/GCA_030295305.1_ASM3029530v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes PRJDB14092 1747 SAMD00517774 ASM3029530v1 Complete Genome Unicycler v. 0.4.7 2023-02-03T01:01:21.420 Japan:Tokyo Acne pustule DNBSEQ-G400; GridION Department of Clinical Microbiology, Tokyo University of Pharmacy and Life Sciences 1403.0x 99.51 98.94 0.25 99.99 0.13 GCF_030295305.1 2327 2407 2407 23 9 46 2 Cutibacterium_acnes_homd_HMT_530 GCA_030296035.1 HMT-552 TP-CV302 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum TP-CV302 1 2575722 63.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/296/035/GCA_030296035.1_ASM3029603v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJDB15193 33010 SAMD00577072 ASM3029603v1 Complete Genome Flye v. 2.9.1-b1780 2023-03-11T01:01:29.357 Japan Sequel IIe Tokyo University of Pharmacy and Life Sciences 120.0x 99.03 100 0 100 0.18 GCF_030296035.1 2318 2398 2398 23 9 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_030316785.1 HMT-755 VTCC 12813 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius VTCC 12813 31 2123229 39.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/316/785/GCA_030316785.1_ASM3031678v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus raffinosi PRJNA981656 3053355 SAMN35710776 ASM3031678v1 Scaffold SPAdes v. 3.15.3 2023-06-11T23:24:05.160 Viet Nam: Ha Noi Breast milk Illumina NovaSeq VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi 375.0x 99.87 99.88 0 100 0.1 GCF_030316785.1 JASZXY01 1949 2061 2061 65 3 43 1 Streptococcus_salivarius_homd_HMT_755 GCA_030323545.1 HMT-812 BS06 Named Cultivated Gastrointestinal Tract (Abundance: Low) HMT-812 Helicobacter pylori BS06 1 1607314 38.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/323/545/GCA_030323545.1_ASM3032354v1 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori_CO PRJNA924083 210 SAMN34043893 ASM3032354v1 Complete Genome SPAdes v. 2021-08-01T00:00:00 2023-04-03T00:27:04.403 Thailand stomach Oxford Nanopore MiniION Mahidol University 1037.0x 94.93 99.62 0 99.99 0.01 GCF_030323545.1 1518 1570 1570 11 4 36 1 Helicobacter_pylori_homd_HMT_812 GCA_030360715.1 HMT-076 TOM.1367 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri TOM.1367 30 2571938 32.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/360/715/GCA_030360715.1_ASM3036071v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJNA984730 1292 SAMN35776907 ASM3036071v1 Contig SPAdes v. 3.15.4 2023-06-16T16:19:04.590 Russia: Altai shubat Illumina Research Center of Biotechnology RAS 500.0x 99.62 99.73 0.67 100 0.08 GCF_030360715.1 JAUCBF01 2489 2585 2585 49 4 42 1 Staphylococcus_warneri_homd_HMT_076 GCA_030371665.1 HMT-169 ET81 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 ET81 37 3006394 68.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/371/665/GCA_030371665.1_ASM3037166v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA377666 1656 SAMN34359484 ASM3037166v1 Contig SPAdes v. 3.11 2023-04-25T06:32:09.417 not applicable caecum Illumina MiSeq Veterinary Research Institute 124.0x 88.31 100 0.95 100 0.14 GCF_030371665.1 JAUDBR01 2450 2520 2520 13 3 53 1 Actinomyces_oris_clade_169_homd_HMT_169 GCA_030371665.1 HMT-169 ET81 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 ET81 37 3006394 68.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/371/665/GCA_030371665.1_ASM3037166v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA377666 1656 SAMN34359484 ASM3037166v1 Contig SPAdes v. 3.11 2023-04-25T06:32:09.417 not applicable caecum Illumina MiSeq Veterinary Research Institute 124.0x 88.31 100 0.95 100 0.14 GCF_030371665.1 JAUDBR01 2450 2520 2520 13 3 53 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_030403525.1 HMT-344 WAC2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-344 Pseudomonas luteola WAC2 18 5019075 55.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/403/525/GCA_030403525.1_ASM3040352v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B;s__Pseudomonas_B luteola PRJNA983803 3055057 SAMN35736752 ASM3040352v1 Contig SPAdes v. v3.13.0 2023-06-14T19:49:07.503 Algeria: Gara Djebilet West crushed rocks in Gara Djebilet Iron Mine Illumina NovaSeq University of New Hampshire 210.8x 99.3 0.43 100 0.09 GCF_030403525.1 JAUEPD01 4615 4730 4730 53 3 58 1 Pseudomonas_luteola_homd_HMT_344 GCA_030403625.1 HMT-197 ZSM2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-197 Kocuria rhizophila ZSM2 31 2645906 70.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/403/625/GCA_030403625.1_ASM3040362v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria rhizophila PRJNA983803 72000 SAMN35736757 ASM3040362v1 Contig SPAdes v. 3.14.0 2023-06-14T19:49:07.550 Algeria: Gara Djebilet Mine crushed rocks in Gara Djebilet Iron Mine Illumina NovaSeq University of New Hampshire 441.1x 97.34 99.34 0 99.99 0.1 GCF_030403625.1 JAUEPG01 2276 2353 2353 17 7 52 1 Kocuria_rhizophila_homd_HMT_197 GCA_030405845.1 HMT-718 SZY H51 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae SZY H51 72 2155846 39.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/405/845/GCA_030405845.1_ASM3040584v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp030405845 PRJNA954267 3041427 SAMN34146969 ASM3040584v1 Contig SPAdes v. 3.15.5 2023-04-11T22:35:04.687 China: Guangzhou Illumina NovaSeq Guangdong Provincial Hospital of Traditional Chinese Medicine 250.0x 99.82 0.31 100 0.13 GCF_030405845.1 JASGBG01 2107 2196 2196 38 3 47 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_030408355.1 HMT-030 DSM 44280 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-030 Corynebacterium afermentans DSM 44280 1 2375453 64.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/355/GCA_030408355.1_ASM3040835v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium afermentans PRJNA417151 144183 SAMN07977566 ASM3040835v1 Complete Genome Newbler v. 2.8 2017-11-04T11:17:02.857 Canada blood culture Illumina MiSeq Bielefeld University 64.6x 99.99 97.32 0 99.86 0.03 GCF_030408355.1 2169 2246 2246 8 12 56 1 Corynebacterium_afermentans_homd_HMT_030 GCA_030408415.1 HMT-033 CIP 107643 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-033 Corynebacterium appendicis CIP 107643 1 2284440 64.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/415/GCA_030408415.1_ASM3040841v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium appendicis PRJNA290985 1161099 SAMN03938400 ASM3040841v1 Complete Genome Newbler v. 2.8 2015-07-26T18:25:17.000 missing abdominal swab of a patient with appendicitis accompanied with abscess formation Illumina MiSeq Bielefeld University 72.3x 99.99 99.34 0.54 100 1.42 GCF_030408415.1 2176 2251 2251 11 9 54 1 Corynebacterium_appendicis_homd_HMT_033 GCA_030408555.1 HMT-034 DSM 44532 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 DSM 44532 2 2740104 60.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/555/GCA_030408555.1_ASM3040855v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA433401 169292 SAMN13404510 ASM3040855v1 Complete Genome Newbler v. 2.8 2019-11-27T05:40:30.366 Germany clinical material Illumina MiSeq Bielefeld University 90.7x 99.99 99.12 0 100 0.09 GCF_030408555.1 2546 2618 2618 7 12 52 1 Corynebacterium_aurimucosum_clade_034_homd_HMT_034 GCA_030408555.1 HMT-034 DSM 44532 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-034 Corynebacterium aurimucosum clade-034 DSM 44532 2 2740104 60.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/555/GCA_030408555.1_ASM3040855v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium aurimucosum PRJNA433401 169292 SAMN13404510 ASM3040855v1 Complete Genome Newbler v. 2.8 2019-11-27T05:40:30.366 Germany clinical material Illumina MiSeq Bielefeld University 90.7x 99.99 99.12 0 100 0.09 GCF_030408555.1 2546 2618 2618 7 12 52 1 Corynebacterium_aurimucosum_HMT_034_450 GCA_030408615.1 HMT-208 DSM 20582 Named Cultivated Nasal (Abundance: Scarce) HMT-208 Corynebacterium bovis DSM 20582 2 2652582 72.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/615/GCA_030408615.1_ASM3040861v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium bovis PRJNA454022 927655 SAMN13404512 ASM3040861v1 Complete Genome Newbler v. 2.8; canu v. 1.8 2019-11-27T05:40:30.406 missing milk Illumina MiSeq; Oxford Nanopore Bielefeld University 104.4x 99.98 99.32 0.45 99.89 0 GCF_030408615.1 2092 2171 2171 9 9 59 2 Corynebacterium_bovis_homd_HMT_208 GCA_030408635.1 HMT-341 DSM 44184 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-341 Corynebacterium coyleae DSM 44184 1 2508772 61.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/635/GCA_030408635.1_ASM3040863v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium coyleae PRJNA354156 53374 SAMN06041731 ASM3040863v1 Complete Genome Newbler v. 2.8 2016-11-19T19:02:05.013 Switzerland: Zurich University Human blood culture Illumina MiSeq Bielefeld University 32.6x 99.99 97.5 0.18 99.92 0.01 GCF_030408635.1 2356 2430 2430 9 12 52 1 Corynebacterium_coyleae_homd_HMT_341 GCA_030408675.1 HMT-595 DSM 45333 Named Cultivated Oral (Abundance: High) HMT-595 Corynebacterium durum DSM 45333 1 2786863 57.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/675/GCA_030408675.1_ASM3040867v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium durum PRJNA289546 61592 SAMN03854665 ASM3040867v1 Complete Genome Newbler v. 2.8 2015-07-10T18:50:05.000 France: Institute of Bacteriol sputum Illumina MiSeq Bielefeld University 71.0x 99.99 99.55 0.45 99.98 0.09 GCF_030408675.1 2569 2646 2646 15 10 51 1 Corynebacterium_durum_homd_HMT_595 GCA_030408695.1 HMT-591 DSM 44123 Named Cultivated Pathogen (Abundance: Scarce) HMT-591 Corynebacterium diphtheriae DSM 44123 1 2405729 53.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/695/GCA_030408695.1_ASM3040869v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae PRJNA516158 1717 SAMN13404519 ASM3040869v1 Complete Genome Newbler v. 2.8; canu v. 1.8 2019-11-27T05:40:30.536 USA: New York throat of a patient with diphtheria Illumina MiSeq; Oxford Nanopore GridION Bielefeld University 120.6x 99.99 99.45 0 99.99 0.71 GCF_030408695.1 2256 2335 2335 10 15 53 1 Corynebacterium_diphtheriae_homd_HMT_591 GCA_030408875.1 HMT-207 DSM 108986 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense DSM 108986 1 2612809 65.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/875/GCA_030408875.1_ASM3040887v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA515398 2041036 SAMN13404526 ASM3040887v1 Complete Genome Newbler v. 2.8; canu v. 1.8 2019-11-27T05:40:30.700 Germany: Goettingen blood of a patient with bacteraemia of unknown origin Illumina MiSeq; Oxford Nanopore GridION Bielefeld University 76.5x 99.96 99.34 0.22 100 0.02 GCF_030408875.1 2341 2419 2419 10 12 55 1 Corynebacterium_gottingense_homd_HMT_207 GCA_030408895.1 HMT-207 DSM 108039 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense DSM 108039 1 2596253 65.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/895/GCA_030408895.1_ASM3040889v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA591911 2041036 SAMN13404527 ASM3040889v1 Complete Genome Newbler v. 2.8; canu v. 1.8 2019-11-27T05:40:30.720 Germany: Goettingen blood of a patient with bacteraemia of unknown origin Illumina MiSeq; Oxford Nanopore GridION Uni Bielefeld 118.6x 99.85 99.34 0 100 0.05 GCF_030408895.1 2329 2407 2407 10 12 55 1 Corynebacterium_gottingense_homd_HMT_207 GCA_030418255.1 HMT-834 NK1 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-834 Pseudomonas otitidis NK1 33 6031849 67.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/418/255/GCA_030418255.1_NK1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas;s__Metapseudomonas otitidis PRJNA941464 319939 SAMN33607704 NK1 Contig SPAdes v. 3.13 2023-03-07T01:23:04.590 Malaysia: Selangor missing Illumina NovaSeq Universiti Putra Malaysia 0.9x 98.22 99.59 0.76 100 0.01 GCF_030418255.1 JARGCP01 5499 5652 5652 78 3 71 1 Pseudomonas_otitidis_homd_HMT_834 GCA_030435155.1 HMT-614 PWPW_T2 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-614 Lysinibacillus fusiformis PWPW_T2 18 4820104 37.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/435/155/GCA_030435155.1_ASM3043515v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus;s__Lysinibacillus fusiformis PRJNA991757 28031 SAMN36317136 ASM3043515v1 Scaffold Velvet v. 1.2.10 2023-07-06T05:11:03.363 Nigeria: Lagos deteriorating pineapple Illumina NextSeq North West University 66.0x 97.32 99.34 2.32 100 0.3 GCF_030435155.1 JAUIZN01 4891 5024 5024 91 5 36 1 Lysinibacillus_fusiformis_homd_HMT_614 GCA_030435855.1 HMT-120 CCSH-121 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus CCSH-121 3 2490837 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/435/855/GCA_030435855.1_ASM3043585v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA498007 1283 SAMN36269253 ASM3043585v1 Complete Genome Prokka v. v1.14.6 2023-07-02T21:58:05.547 South Korea: Chungcheong Nasal cavity Oxford Nanopore MinION; Illumina iSeq Chung-Ang University 513.0x 99.11 99.62 0 99.98 0.19 GCF_030435855.1 2403 2570 2570 84 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_030435915.1 HMT-601 CKFA-393 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis CKFA-393 4 2453845 32.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/435/915/GCA_030435915.1_ASM3043591v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA498007 1282 SAMN36269254 ASM3043591v1 Complete Genome Prokka v. v1.14.6 2023-07-02T22:03:06.825 South Korea: Gyeongsang cloaca Oxford Nanopore MinION; Illumina iSeq Chung-Ang University 484.0x 99.56 99.81 0 100 0.03 GCF_030435915.1 2224 2384 2384 80 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_030435935.1 HMT-120 CJFE-402M Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus CJFE-402M 3 2610080 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/435/935/GCA_030435935.1_ASM3043593v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA498007 1283 SAMN36269255 ASM3043593v1 Complete Genome Prokka v. v1.14.6 2023-07-02T22:06:05.715 South Korea: Jeolla Fence Oxford Nanopore MinION; Illumina iSeq Chung-Ang University 495.0x 97.72 99.62 0.16 100 0.25 GCF_030435935.1 2494 2651 2651 75 19 62 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_030435975.1 HMT-601 CCSH-141 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis CCSH-141 2 2537768 32.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/435/975/GCA_030435975.1_ASM3043597v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJNA498007 1282 SAMN36269256 ASM3043597v1 Complete Genome Prokka v. v1.14.6 2023-07-02T22:10:06.548 South Korea: Chungcheong Nasal cavity Oxford Nanopore MinION; Illumina iSeq Chung-Ang University 453.0x 97.21 99.67 0 99.99 0.48 GCF_030435975.1 2307 2464 2464 77 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_030436145.1 HMT-805 L2 Named Cultivated Pathogen (Abundance: Scarce) HMT-805 Treponema pallidum L2 1 1132489 52.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/436/145/GCA_030436145.1_ASM3043614v1 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema;s__Treponema pallidum PRJNA606433 53435 SAMN14091211 ASM3043614v1 Complete Genome IDBA_UD v. JAN-2018 2020-02-13T05:09:05.290 Sweden skin ulcer Illumina MiSeq Veterinary Research Institute 900.0x 99.92 99.19 0 98.64 0 GCF_030436145.1 973 1027 1027 2 6 45 1 Treponema_pallidum_homd_HMT_805 GCA_030439925.1 HMT-622 SG2 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii SG2 9 2156808 40.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/439/925/GCA_030439925.1_ASM3043992v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA917188 3018244 SAMN32527085 ASM3043992v1 Contig SPAdes v. 3.13.0 2023-01-01T17:51:03.550 Germany sputum Illumina MiSeq University Hospital Dresden 75.0x 100 0 100 0.09 GCF_030439925.1 JAQFJD01 2038 2105 2105 28 4 34 1 Streptococcus_gordonii_homd_HMT_622 GCA_030439935.1 HMT-622 SG1 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii SG1 18 2187339 40.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/439/935/GCA_030439935.1_ASM3043993v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJNA917188 3018243 SAMN32527084 ASM3043993v1 Contig SPAdes v. 3.13.0 2023-01-01T17:07:03.953 Germany sputum Illumina MiSeq University Hospital Dresden 51.0x 100 0 100 0.1 GCF_030439935.1 JAQFJC01 2078 2157 2157 28 4 46 1 Streptococcus_gordonii_homd_HMT_622 GCA_030439945.1 HMT-644 SI1 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius SI1 10 1948549 37.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/439/945/GCA_030439945.1_ASM3043994v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA917188 3018245 SAMN32527096 ASM3043994v1 Contig SPAdes v. 3.13.0 2023-01-01T17:57:03.760 Germany sputum Illumina MiSeq University Hospital Dresden 83.0x 99.65 0 100 0.2 GCF_030439945.1 JAQFJE01 1870 1958 1958 37 5 45 1 Streptococcus_intermedius_homd_HMT_644 GCA_030440045.1 HMT-411 SP8 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis SP8 28 2224732 41.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/045/GCA_030440045.1_ASM3044004v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_I PRJNA917188 3018252 SAMN32531164 ASM3044004v1 Contig SPAdes v. 3.13.0 2023-01-02T06:03:05.090 Germany sputum Illumina MiSeq University Hospital Dresden 29.0x 100 0.58 99.99 0 GCF_030440045.1 JAQFJL01 2143 2235 2235 37 4 50 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_030440055.1 HMT-431 SO4 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 SO4 35 2062892 39.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/055/GCA_030440055.1_ASM3044005v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_F PRJNA917188 3018249 SAMN32530616 ASM3044005v1 Contig SPAdes v. 3.13.0 2023-01-02T05:36:12.293 Germany sputum Illumina MiSeq University Hospital Dresden 25.0x 99.96 0.24 100 0.02 GCF_030440055.1 JAQFJI01 1934 2025 2025 44 4 42 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_030440055.1 HMT-431 SO4 Named Cultivated Oral (Abundance: High) HMT-431 Streptococcus infantis clade-431 SO4 35 2062892 39.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/055/GCA_030440055.1_ASM3044005v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_F PRJNA917188 3018249 SAMN32530616 ASM3044005v1 Contig SPAdes v. 3.13.0 2023-01-02T05:36:12.293 Germany sputum Illumina MiSeq University Hospital Dresden 25.0x 99.96 0.24 100 0.02 GCF_030440055.1 JAQFJI01 1934 2025 2025 44 4 42 1 Streptococcus_infantis_clade_431_homd_HMT_431 GCA_030440125.1 HMT-755 SS4 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius SS4 20 2392142 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/125/GCA_030440125.1_ASM3044012v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJNA917188 3018253 SAMN32531404 ASM3044012v1 Contig SPAdes v. 3.13.0 2023-01-02T07:13:04.347 Germany sputum Illumina MiSeq University Hospital Dresden 19.0x 99.54 0.39 100 0.05 GCF_030440125.1 JAQFJM01 2175 2264 2264 39 5 44 1 Streptococcus_salivarius_homd_HMT_755 GCA_030440175.1 HMT-755 SV2 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius SV2 34 2090545 39.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/175/GCA_030440175.1_ASM3044017v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus raffinosi PRJNA917188 3018257 SAMN32531545 ASM3044017v1 Contig SPAdes v. 3.13.0 2023-01-02T07:27:09.773 Germany sputum Illumina MiSeq University Hospital Dresden 24.0x 99.88 0 100 0.09 GCF_030440175.1 JAQFJQ01 1912 2024 2024 57 5 49 1 Streptococcus_salivarius_homd_HMT_755 GCA_030440305.1 HMT-207 DSM 105365 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-207 Corynebacterium gottingense DSM 105365 1 2736752 64.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/305/GCA_030440305.1_ASM3044030v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium gottingense PRJNA454157 2026255 SAMN13404529 ASM3044030v1 Complete Genome Newbler v. 2.8; canu v. 1.8 2019-11-27T05:40:30.753 Pacific Ocean: New Britain Tre hadopelagic water Illumina MiSeq; Oxford Nanopore GridION Bielefeld University 101.2x 99.99 99.34 0.27 99.99 0.47 GCF_030440305.1 2465 2544 2544 9 12 57 1 Corynebacterium_gottingense_homd_HMT_207 GCA_030440475.1 HMT-619 yellow Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis yellow 1 2515718 48.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/475/GCA_030440475.1_ASM3044047v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA847540 837 SAMN28956760 ASM3044047v1 Complete Genome CLC NGS Cell v. 12 2022-06-10T09:16:03.977 Netherlands patient with periodontitis Illumina MiSeq universitair medish centrum groningen 72.0x 98.44 99.92 0.1 99.99 0.1 GCF_030440475.1 2141 2228 2228 21 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_030440495.1 HMT-619 grey Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis grey 1 2515721 48.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/495/GCA_030440495.1_ASM3044049v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA847540 837 SAMN28956759 ASM3044049v1 Complete Genome CLC NGS Cell v. 12 2022-06-10T09:16:03.957 Netherlands patient with periodontitis Illumina MiSeq universitair medish centrum groningen 76.0x 98.43 99.92 0.1 99.99 0.1 GCF_030440495.1 2143 2230 2230 21 12 53 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_030444115.1 HMT-021 SVE8 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis SVE8 40 1894186 39.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/444/115/GCA_030444115.1_ASM3044411v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJNA989765 1343 SAMN36190549 ASM3044411v1 Contig SPAdes v. 3.1.0 2023-07-01T06:13:03.327 China saliva PacBio sichuan University 100.0x 97.58 100 0.15 99.98 0.07 GCF_030444115.1 JAUJGC01 1833 1933 1933 50 5 44 1 Streptococcus_vestibularis_homd_HMT_021 GCA_030450025.1 HMT-862 XZM1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-862 Bifidobacterium longum XZM1 1 2528511 60.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/450/025/GCA_030450025.1_ASM3045002v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum PRJNA892248 216816 SAMN31373089 ASM3045002v1 Complete Genome HGAP v. 2.3 2022-10-20T01:42:04.697 China:Xuzhou, Jiangsu PacBio RSII Jiangsu Key Laboratory of Immunity and Metabolism, Xuzhou Medical University 401.0x 98.92 100 0.12 99.99 0.13 GCF_030450025.1 2110 2187 2187 12 8 56 1 Bifidobacterium_longum_homd_HMT_862 GCA_030450175.1 HMT-077 CTNIH10 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum CTNIH10 1 2448195 59.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/450/175/GCA_030450175.1_ASM3045017v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_D PRJNA854648 38304 SAMN18605692 ASM3045017v1 Complete Genome canu v. 2.1 2021-04-02T15:45:07.043 USA skin PacBio Sequel II NHGRI/NIH 253.0x 94.91 99.6 0 99.99 0.12 GCF_030450175.1 2312 2387 2387 10 12 52 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_030466425.1 HMT-638 9.1(2021) Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 9.1(2021) 7 1798038 39.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/466/425/GCA_030466425.1_ASM3046642v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_M PRJNA721535 2825889 SAMN18720203 ASM3046642v1 Contig SPAdes v. 3.12 2021-04-13T00:35:04.757 United Kingdom: Liverpool sputum Illumina HiSeq Wenzhou-Kean University: Kean University - Wenzhou Campus 2450.0x 100 0.34 100 0.11 GCF_030466425.1 JAGQFU01 1707 1812 1812 50 5 49 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_030466425.1 HMT-638 9.1(2021) Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 9.1(2021) 7 1798038 39.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/466/425/GCA_030466425.1_ASM3046642v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_M PRJNA721535 2825889 SAMN18720203 ASM3046642v1 Contig SPAdes v. 3.12 2021-04-13T00:35:04.757 United Kingdom: Liverpool sputum Illumina HiSeq Wenzhou-Kean University: Kean University - Wenzhou Campus 2450.0x 100 0.34 100 0.11 GCF_030466425.1 JAGQFU01 1707 1812 1812 50 5 49 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_030480485.1 HMT-883 LB-1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-883 Lactiplantibacillus pentosus LB-1 9 3796630 46.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/480/485/GCA_030480485.1_ASM3048048v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus PRJNA990461 1589 SAMN36267732 ASM3048048v1 Complete Genome Unicycler v. v0.5.0 2023-07-02T10:01:05.897 China:Nanjing Dairy Oxford Nanopore; Illumina Nanjing University of Science and Technology 275.0x 99.99 99.38 2.16 100 1.81 GCF_030480485.1 3460 3594 3594 45 16 72 1 Lactiplantibacillus_pentosus_homd_HMT_883 GCA_030486605.1 HMT-835 P14_F4 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-835 Corynebacterium mucifaciens P14_F4 29 2114939 65.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/486/605/GCA_030486605.1_ASM3048660v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium mucifaciens PRJNA991496 401472 SAMN36295139 ASM3048660v1 Contig SPAdes v. v3.15.2 2023-07-05T10:57:03.870 Denmark: Aarhus skin swab forehead Illumina MiSeq Aarhus University 136.0x 97.21 98.79 0 99.95 0.02 GCF_030486605.1 JAUKFN01 2032 2101 2101 9 5 54 1 Corynebacterium_mucifaciens_homd_HMT_835 GCA_030486705.1 HMT-077 P5_F2 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum P5_F2 30 2303461 59.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/486/705/GCA_030486705.1_ASM3048670v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_D PRJNA991496 38304 SAMN36295145 ASM3048670v1 Contig SPAdes v. v3.15.2 2023-07-05T10:57:03.930 Denmark: Aarhus skin swab forehead Illumina MiSeq Aarhus University 176.0x 94.76 99.16 0 99.98 0.07 GCF_030486705.1 JAUKFT01 2153 2220 2220 9 6 51 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_030486785.1 HMT-783 P5_C4 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii P5_C4 35 2509220 58.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/486/785/GCA_030486785.1_ASM3048678v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA991496 1979527 SAMN36295136 ASM3048678v1 Contig SPAdes v. v3.15.2 2023-07-05T10:57:03.827 Denmark: Aarhus skin swab cheek Illumina MiSeq Aarhus University 156.0x 96.04 99.71 0 100 0.04 GCF_030486785.1 JAUKFK01 2383 2449 2449 8 5 52 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_030486815.1 HMT-835 P4_C2 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-835 Corynebacterium mucifaciens P4_C2 16 2037780 65.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/486/815/GCA_030486815.1_ASM3048681v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium mucifaciens PRJNA991496 401472 SAMN36295143 ASM3048681v1 Contig SPAdes v. v3.15.2 2023-07-05T10:57:03.910 Denmark: Aarhus skin swab cheek Illumina MiSeq Aarhus University 216.0x 96.91 98.64 0.44 99.96 0.21 GCF_030486815.1 JAUKFR01 1971 2038 2038 9 3 54 1 Corynebacterium_mucifaciens_homd_HMT_835 GCA_030486845.1 HMT-783 P7_F1 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii P7_F1 14 2409602 58.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/486/845/GCA_030486845.1_ASM3048684v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA991496 1979527 SAMN36295138 ASM3048684v1 Contig SPAdes v. v3.15.2 2023-07-05T10:57:03.860 Denmark: Aarhus skin swab forehead Illumina MiSeq Aarhus University 172.0x 96.2 99.71 0 99.99 0.01 GCF_030486845.1 JAUKFM01 2282 2348 2348 9 5 51 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_030486885.1 HMT-783 P7_C1 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii P7_C1 104 2402275 58.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/486/885/GCA_030486885.1_ASM3048688v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA991496 1979527 SAMN36295137 ASM3048688v1 Contig SPAdes v. v3.15.2 2023-07-05T10:57:03.843 Denmark: Aarhus skin swab cheek Illumina MiSeq Aarhus University 51.0x 96.21 99.41 0.09 99.77 0.15 GCF_030486885.1 JAUKFL01 2324 2389 2389 9 5 50 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_030503475.1 HMT-127 CONS_ST78 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis CONS_ST78 34 2174186 31.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/503/475/GCA_030503475.1_ASM3050347v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA980213 1290 SAMN36373916 ASM3050347v1 Contig SPAdes v. 3.15.5 2023-07-08T14:47:05.866 South Africa stool Illumina Stellenbosch University 227.0x 99.08 99.38 0.57 99.96 0.05 GCF_030503475.1 JAUKOZ01 2116 2220 2220 53 4 46 1 Staphylococcus_hominis_homd_HMT_127 GCA_030503485.1 HMT-127 CONS_83 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis CONS_83 25 2160289 31.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/503/485/GCA_030503485.1_ASM3050348v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA980213 1290 SAMN36373919 ASM3050348v1 Contig SPAdes v. 3.15.5 2023-07-08T14:47:05.906 South Africa stool Illumina Stellenbosch University 247.0x 99.1 99.38 0.57 99.99 0.39 GCF_030503485.1 JAUKOW01 2055 2155 2155 53 3 43 1 Staphylococcus_hominis_homd_HMT_127 GCA_030503545.1 HMT-127 CONS_84 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis CONS_84 21 2161998 31.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/503/545/GCA_030503545.1_ASM3050354v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA980213 1290 SAMN36373920 ASM3050354v1 Contig SPAdes v. 3.15.5 2023-07-08T14:47:05.913 South Africa stool Illumina Stellenbosch University 212.0x 99.19 99.38 0.57 99.99 0.03 GCF_030503545.1 JAUKOV01 2068 2164 2164 52 5 38 1 Staphylococcus_hominis_homd_HMT_127 GCA_030503715.1 HMT-077 CTNIH12 Named Cultivated Nasal (Abundance: High) HMT-077 Corynebacterium tuberculostearicum CTNIH12 2 2387299 59.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/503/715/GCA_030503715.1_ASM3050371v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium tuberculostearicum_D PRJNA854648 38304 SAMN18605693 ASM3050371v1 Complete Genome canu v. 2.1 2021-04-02T15:45:07.063 USA skin PacBio Sequel II NHGRI/NIH 225.0x 94.98 99.6 0.22 99.96 0.19 GCF_030503715.1 2220 2297 2297 11 12 53 1 Corynebacterium_tuberculostearicum_homd_HMT_077 GCA_030503795.1 HMT-241 DH-B18 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-241 Brochothrix thermosphacta DH-B18 1 2558019 36.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/503/795/GCA_030503795.1_ASM3050379v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta PRJNA993613 2756 SAMN36404986 ASM3050379v1 Complete Genome Flye v. 2.9.1 2023-07-11T10:26:06.377 Germany: in the city of Bonn raw sausage Oxford Nanopore MinION University of Bonn 62.0x 99.16 99.31 0 99.28 0.25 GCF_030503795.1 2464 2633 2633 55 28 85 1 Brochothrix_thermosphacta_homd_HMT_241 GCA_030503915.1 HMT-209 C33 Named NVP Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-209 Acidovorax ebreus C33 1 3674978 66.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/503/915/GCA_030503915.1_ASM3050391v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter;s__Diaphorobacter nitroreducens PRJNA992658 3060154 SAMN36368427 ASM3050391v1 Complete Genome HGAP v. 3.0 2023-07-08T05:27:41.873 South Korea PacBio RSII; Illumina Chungbuk National University 228.0x 99.9 0.15 100 0.06 GCF_030503915.1 3366 3453 3453 20 9 57 1 Acidovorax_ebreus_homd_HMT_209 GCA_030515635.1 HMT-059 CP11 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum CP11 1 2487883 56.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/635/GCA_030515635.1_ASM3051563v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842591 43769 SAMN28690445 ASM3051563v1 Complete Genome SPAdes v. 3.13.1 2022-05-27T05:21:05.926 Hungary: Budapest Illumina MiSeq Semmelweis University 3697750.0x 97.23 99.67 0 99.99 0.1 GCF_030515635.1 2247 2306 2306 7 5 46 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030515655.1 HMT-060 CP10 Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum CP10 1 2304546 55.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/655/GCA_030515655.1_ASM3051565v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842591 37637 SAMN28690444 ASM3051565v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.916 Hungary: Budapest Illumina MiSeq Semmelweis University 3670700.0x 98.32 99.67 0 99.99 0.02 GCF_030515655.1 2083 2141 2141 6 6 45 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030515675.1 HMT-059 CP9 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum CP9 1 2538112 56.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/675/GCA_030515675.1_ASM3051567v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842591 43769 SAMN28690443 ASM3051567v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.903 Hungary: Budapest Illumina MiSeq Semmelweis University 3367620.0x 97.22 99.56 0 99.91 0.05 GCF_030515675.1 2302 2362 2362 7 6 46 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030515695.1 HMT-059 CP8 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum CP8 1 2525881 56.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/695/GCA_030515695.1_ASM3051569v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842591 43769 SAMN28690442 ASM3051569v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.893 Hungary: Budapest Illumina MiSeq Semmelweis University 4081210.0x 97.37 99.78 0 99.99 0.03 GCF_030515695.1 2281 2341 2341 7 6 46 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030515715.1 HMT-059 CP7 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum CP7 1 2538849 56.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/715/GCA_030515715.1_ASM3051571v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842591 43769 SAMN28690441 ASM3051571v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.880 Hungary: Budapest Illumina MiSeq Semmelweis University 3324590.0x 97.22 99.78 0 99.92 0.05 GCF_030515715.1 2313 2373 2373 7 6 46 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030515735.1 HMT-059 CP6 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum CP6 1 2539107 56.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/735/GCA_030515735.1_ASM3051573v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842591 43769 SAMN28690440 ASM3051573v1 Complete Genome SPAdes v. 3.13.1 2022-05-27T05:21:05.870 Hungary: Budapest Illumina MiSeq Semmelweis University 3580250.0x 97.22 99.56 0 99.92 0.05 GCF_030515735.1 2310 2370 2370 7 6 46 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030515755.1 HMT-059 CP5 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum CP5 1 2526008 56.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/755/GCA_030515755.1_ASM3051575v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842591 43769 SAMN28690439 ASM3051575v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.860 Hungary: Budapest Illumina MiSeq Semmelweis University 3440220.0x 97.38 99.78 0 99.99 0.06 GCF_030515755.1 2271 2331 2331 7 6 46 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030515775.1 HMT-059 CP4 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum CP4 1 2530919 56.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/775/GCA_030515775.1_ASM3051577v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842591 43769 SAMN28690438 ASM3051577v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.846 Hungary: Budapest Illumina MiSeq Semmelweis University 3704430.0x 97.23 99.56 0 99.9 0.06 GCF_030515775.1 2304 2364 2364 7 6 46 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030515795.1 HMT-059 CP3 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum CP3 1 2504442 56.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/795/GCA_030515795.1_ASM3051579v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842591 43769 SAMN28690437 ASM3051579v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.836 Hungary: Budapest Illumina MiSeq Semmelweis University 3496550.0x 97.73 99.67 0 99.98 0.06 GCF_030515795.1 2252 2308 2308 6 3 46 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030515815.1 HMT-059 CP2 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum CP2 1 2531501 56.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/815/GCA_030515815.1_ASM3051581v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842591 43769 SAMN28690436 ASM3051581v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.816 Hungary: Budapest Illumina MiSeq Semmelweis University 3476450.0x 97.24 99.56 0 99.87 0.06 GCF_030515815.1 2297 2357 2357 7 6 46 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030515835.1 HMT-059 CP1 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum CP1 1 2592346 56.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/835/GCA_030515835.1_ASM3051583v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJNA842591 43769 SAMN28690435 ASM3051583v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.803 Hungary: Budapest Illumina MiSeq Semmelweis University 3961750.0x 97.57 99.78 0 99.95 0.07 GCF_030515835.1 2372 2430 2430 7 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_030515855.1 HMT-060 CPD Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum CPD 1 2304556 55.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/855/GCA_030515855.1_ASM3051585v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJNA842591 37637 SAMN28690434 ASM3051585v1 Complete Genome SPAdes v. 3.13.1 2022-05-27T05:21:05.793 Hungary: Budapest Illumina MiSeq Semmelweis University 3818170.0x 98.32 99.67 0 99.98 0.02 GCF_030515855.1 2074 2133 2133 6 6 46 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_030515875.1 HMT-783 CT Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii CT 1 2482927 58.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/875/GCA_030515875.1_ASM3051587v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJNA842591 38304 SAMN28690433 ASM3051587v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.780 Hungary: Budapest Illumina MiSeq Semmelweis University 3600180.0x 88.92 99.78 0 100 0.04 GCF_030515875.1 2350 2419 2419 10 6 52 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_030515895.1 HMT-019 CA9 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens CA9 1 2552066 59.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/895/GCA_030515895.1_ASM3051589v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842591 38284 SAMN28690432 ASM3051589v1 Complete Genome SPAdes v. 3.13.1 2022-05-27T05:21:05.770 Hungary: Budapest Illumina MiSeq Semmelweis University 4225740.0x 96.78 99.78 0 100 0.38 GCF_030515895.1 2413 2481 2481 7 6 53 2 Corynebacterium_accolens_homd_HMT_019 GCA_030515925.1 HMT-019 CA8 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens CA8 1 2539699 59.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/515/925/GCA_030515925.1_ASM3051592v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842591 38284 SAMN28690431 ASM3051592v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.756 Hungary: Budapest Illumina MiSeq Semmelweis University 3913090.0x 96.92 99.34 0 99.99 0.07 GCF_030515925.1 2367 2432 2432 7 6 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_030516055.1 HMT-019 CA6 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens CA6 1 2479006 59.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/516/055/GCA_030516055.1_ASM3051605v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842591 38284 SAMN28690429 ASM3051605v1 Complete Genome SPAdes v. 3.13.1 2022-05-27T05:21:05.733 Hungary: Budapest Illumina MiSeq Semmelweis University 3562920.0x 97.01 99.78 0 99.99 0.03 GCF_030516055.1 2290 2356 2356 7 6 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030516125.1 HMT-019 CA5 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens CA5 1 2393717 59.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/516/125/GCA_030516125.1_ASM3051612v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842591 38284 SAMN28690428 ASM3051612v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.723 Hungary: Budapest Illumina MiSeq Semmelweis University 3526650.0x 96.95 99.78 0 100 0.06 GCF_030516125.1 2227 2291 2291 7 5 51 1 Corynebacterium_accolens_homd_HMT_019 GCA_030516155.1 HMT-019 CA4 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens CA4 1 2501729 59.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/516/155/GCA_030516155.1_ASM3051615v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842591 38284 SAMN28690427 ASM3051615v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.713 Hungary: Budapest Illumina MiSeq Semmelweis University 3182220.0x 96.91 99.78 0 99.99 0.03 GCF_030516155.1 2329 2396 2396 7 7 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030516175.1 HMT-019 CA3 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens CA3 1 2548138 59.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/516/175/GCA_030516175.1_ASM3051617v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842591 38284 SAMN28690426 ASM3051617v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.700 Hungary: Budapest Illumina MiSeq Semmelweis University 3193430.0x 96.77 99.78 0 100 0.11 GCF_030516175.1 2396 2461 2461 7 5 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030516195.1 HMT-019 CA2 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens CA2 1 2552612 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/516/195/GCA_030516195.1_ASM3051619v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842591 38284 SAMN28690425 ASM3051619v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.690 Hungary: Budapest Illumina MiSeq Semmelweis University 2898390.0x 96.77 99.56 0.15 100 0.21 GCF_030516195.1 2406 2471 2471 7 5 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030516215.1 HMT-019 CA1 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens CA1 1 2552168 59.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/516/215/GCA_030516215.1_ASM3051621v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJNA842591 38284 SAMN28690424 ASM3051621v1 Chromosome SPAdes v. 3.13.1 2022-05-27T05:21:05.676 Hungary: Budapest Illumina MiSeq Semmelweis University 2648850.0x 96.77 99.78 0.15 100 0.21 GCF_030516215.1 2398 2463 2463 7 5 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_030518775.1 HMT-544 MWF001 Named Cultivated Pathogen (Abundance: Scarce) HMT-544 Brucella anthropi MWF001 2 5111417 56.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/518/775/GCA_030518775.1_ASM3051877v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Brucella;s__Brucella anthropi PRJNA991498 529 SAMN36295337 ASM3051877v1 Complete Genome Canu v. 2.2; Racon v. 1.5.0; Polypolish v. 0.5.0 2023-07-05T11:08:05.677 United Kingdom: Melton Mowbray Metal working fluids PacBio; Illumina University of Lausanne 167.0x 97.55 100 0 100 2.14 GCF_030518775.1 4850 4974 4974 51 12 60 1 Brucella_anthropi_homd_HMT_544 GCA_030527835.1 HMT-213 S18M_Sa_5 Named Cultivated Oral (Abundance: Medium) HMT-213 Leptotrichia hongkongensis S18M_Sa_5 45 2004496 29.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/527/835/GCA_030527835.1_ASM3052783v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia hongkongensis PRJNA983076 554406 SAMN36400167 ASM3052783v1 Scaffold SPAdes v. 3.15.4 2023-07-11T04:00:15.160 Germany: Zoo Saarbruecken saliva Illumina NovaSeq Center for Bioinformatics 32.8x 97.82 92.05 0.57 84.66 0.05 JAUMZZ01 1842 1875 1875 15 0 17 1 Leptotrichia_hongkongensis_homd_HMT_213 GCA_030527845.1 HMT-194 S18M_Sa_6 Named Cultivated Oral (Abundance: High) HMT-194 Arachnia rubra S18M_Sa_6 49 3183181 64.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/527/845/GCA_030527845.1_ASM3052784v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia rubra PRJNA983076 2021380 SAMN36400168 ASM3052784v1 Scaffold SPAdes v. 3.15.4 2023-07-11T04:00:15.176 Germany: Zoo Saarbruecken saliva Illumina NovaSeq Center for Bioinformatics 58.7x 96.95 2.79 100 1.76 JAUNAA01 2892 2963 2963 18 0 51 2 Arachnia_rubra_homd_HMT_194 GCA_030527985.1 HMT-169 S18M_Sa_13 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 S18M_Sa_13 47 2998464 68.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/527/985/GCA_030527985.1_ASM3052798v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA983076 29317 SAMN36400161 ASM3052798v1 Scaffold SPAdes v. 3.15.4 2023-07-11T04:00:15.063 Germany: Zoo Saarbruecken saliva Illumina NovaSeq Center for Bioinformatics 85.4x 98.07 0.47 99.99 0.25 GCF_030527985.1 JAUMZT01 2500 2562 2562 13 0 48 1 Actinomyces_oris_clade_169_homd_HMT_169 GCA_030527985.1 HMT-169 S18M_Sa_13 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 S18M_Sa_13 47 2998464 68.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/527/985/GCA_030527985.1_ASM3052798v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA983076 29317 SAMN36400161 ASM3052798v1 Scaffold SPAdes v. 3.15.4 2023-07-11T04:00:15.063 Germany: Zoo Saarbruecken saliva Illumina NovaSeq Center for Bioinformatics 85.4x 98.07 0.47 99.99 0.25 GCF_030527985.1 JAUMZT01 2500 2562 2562 13 0 48 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_030528005.1 HMT-595 S18M_Sa_12 Named Cultivated Oral (Abundance: High) HMT-595 Corynebacterium durum S18M_Sa_12 31 2819628 57.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/528/005/GCA_030528005.1_ASM3052800v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium durum PRJNA983076 61592 SAMN36400160 ASM3052800v1 Scaffold SPAdes v. 3.15.4 2023-07-11T04:00:15.043 Germany: Zoo Saarbruecken saliva Illumina NovaSeq Center for Bioinformatics 10.4x 96.88 99.55 0.45 100 0.08 GCF_030528005.1 JAUMZS01 2637 2699 2699 15 0 46 1 Corynebacterium_durum_homd_HMT_595 GCA_030530435.1 HMT-873 S12M_Sa_6 Phylotype Uncultivated Oral (Abundance: Scarce) HMT-873 Patescibacteria [C1 O1 F1 G2] bacterium HMT-873 S12M_Sa_6 38 922080 36.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/530/435/GCA_030530435.1_ASM3053043v1 d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__BD1-5;f__UBA2023;g__GN02-873;s__GN02-873 sp003260345 PRJNA983076 2044595 SAMN36400032 ASM3053043v1 Scaffold SPAdes v. 3.15.4 2023-07-11T04:00:13.330 Germany: Zoo Saarbruecken saliva Illumina NovaSeq Center for Bioinformatics 10.8x 73.83 1.12 86.02 0.14 JAUMUZ01 1238 1270 1270 1 0 31 0 Patescibacteria__C1_O1_F1_G2__bacterium_HMT_873_homd_HMT_873 GCA_030530555.1 HMT-188 S12M_Sa_16 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria S12M_Sa_16 34 2429980 57.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/530/555/GCA_030530555.1_ASM3053055v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJNA983076 1885016 SAMN36400025 ASM3053055v1 Scaffold SPAdes v. 3.15.4 2023-07-11T04:00:13.250 Germany: Zoo Saarbruecken saliva Illumina NovaSeq Center for Bioinformatics 14.1x 96.8 0 99.98 0.07 GCF_030530555.1 JAUMUS01 2104 2155 2155 12 2 36 1 Rothia_aeria_homd_HMT_188 GCA_030540895.1 HMT-127 G15S1 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis G15S1 13 2216911 31.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/540/895/GCA_030540895.1_ASM3054089v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJNA955416 1290 SAMN34177315 ASM3054089v1 Contig SPAdes v. 3.13.0 2023-04-14T03:50:04.613 Turkey:Van City Illumina HiSeq Van Yuzuncu Yil University 160.0x 99.24 99.38 0.07 100 0.01 GCF_030540895.1 JARWBN01 2157 2279 2279 52 9 60 1 Staphylococcus_hominis_homd_HMT_127 GCA_030545605.1 HMT-638 GP0477 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 GP0477 17 1768524 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/545/605/GCA_030545605.1_ASM3054560v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_J PRJNA833080 68892 SAMN36496299 ASM3054560v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.783 USA: New Hampshire transcending colon brush Illumina NextSeq University of New Hampshire 769.8x 93.85 99.92 0.11 100 0.09 GCF_030545605.1 JAUOMI01 1702 1782 1782 34 4 41 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_030545605.1 HMT-638 GP0477 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 GP0477 17 1768524 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/545/605/GCA_030545605.1_ASM3054560v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_J PRJNA833080 68892 SAMN36496299 ASM3054560v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.783 USA: New Hampshire transcending colon brush Illumina NextSeq University of New Hampshire 769.8x 93.85 99.92 0.11 100 0.09 GCF_030545605.1 JAUOMI01 1702 1782 1782 34 4 41 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_030545615.1 HMT-411 GP0470 Named Cultivated Oral (Abundance: Scarce) HMT-411 Streptococcus parasanguinis GP0470 35 2139427 41.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/545/615/GCA_030545615.1_ASM3054561v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis_Z PRJNA833080 1318 SAMN36496298 ASM3054561v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.773 USA: New Hampshire transcending colon brush Illumina NextSeq University of New Hampshire 896.6x 94.14 100 0.07 100 0.03 GCF_030545615.1 JAUOMJ01 1979 2061 2061 35 3 43 1 Streptococcus_parasanguinis_homd_HMT_411 GCA_030546225.1 HMT-707 GP0053 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis GP0053 24 2073577 40.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/546/225/GCA_030546225.1_ASM3054622v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA833080 1303 SAMN36496265 ASM3054622v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.443 USA: New Hampshire small bowel brush Illumina NextSeq University of New Hampshire 921.1x 94.63 99.87 0.4 100 0.05 GCF_030546225.1 JAUONO01 2001 2091 2091 43 3 43 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_030546225.1 HMT-707 GP0053 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis GP0053 24 2073577 40.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/546/225/GCA_030546225.1_ASM3054622v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA833080 1303 SAMN36496265 ASM3054622v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.443 USA: New Hampshire small bowel brush Illumina NextSeq University of New Hampshire 921.1x 94.63 99.87 0.4 100 0.05 GCF_030546225.1 JAUONO01 2001 2091 2091 43 3 43 1 Streptococcus_oralis_HMT_071_398_707 GCA_030546245.1 HMT-707 GP0025 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis GP0025 24 2071804 40.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/546/245/GCA_030546245.1_ASM3054624v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA833080 1303 SAMN36496263 ASM3054624v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.426 USA: New Hampshire esophagus brush Illumina NextSeq University of New Hampshire 753.3x 94.64 99.87 0.4 100 0.05 GCF_030546245.1 JAUONP01 2001 2091 2091 43 3 43 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_030546245.1 HMT-707 GP0025 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis GP0025 24 2071804 40.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/546/245/GCA_030546245.1_ASM3054624v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA833080 1303 SAMN36496263 ASM3054624v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.426 USA: New Hampshire esophagus brush Illumina NextSeq University of New Hampshire 753.3x 94.64 99.87 0.4 100 0.05 GCF_030546245.1 JAUONP01 2001 2091 2091 43 3 43 1 Streptococcus_oralis_HMT_071_398_707 GCA_030546285.1 HMT-707 GP0012 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis GP0012 24 2049680 41.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/546/285/GCA_030546285.1_ASM3054628v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA833080 1303 SAMN36496262 ASM3054628v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.416 USA: New Hampshire esophagus aspirate Illumina NextSeq University of New Hampshire 708.0x 94.64 99.87 0.4 100 0.06 GCF_030546285.1 JAUONQ01 1979 2067 2067 41 3 43 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_030546285.1 HMT-707 GP0012 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis GP0012 24 2049680 41.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/546/285/GCA_030546285.1_ASM3054628v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_S PRJNA833080 1303 SAMN36496262 ASM3054628v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.416 USA: New Hampshire esophagus aspirate Illumina NextSeq University of New Hampshire 708.0x 94.64 99.87 0.4 100 0.06 GCF_030546285.1 JAUONQ01 1979 2067 2067 41 3 43 1 Streptococcus_oralis_HMT_071_398_707 GCA_030546305.1 HMT-707 GP0011 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis GP0011 20 2109804 40.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/546/305/GCA_030546305.1_ASM3054630v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp030546305 PRJNA833080 3063751 SAMN36496261 ASM3054630v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.406 USA: New Hampshire esophagus aspirate Illumina NextSeq University of New Hampshire 828.1x 99.87 0.2 100 0.06 GCF_030546305.1 JAUONR01 2005 2094 2094 43 3 42 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_030546305.1 HMT-707 GP0011 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis GP0011 20 2109804 40.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/546/305/GCA_030546305.1_ASM3054630v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp030546305 PRJNA833080 3063751 SAMN36496261 ASM3054630v1 Contig SPAdes v. 3.13 2023-07-17T13:43:06.406 USA: New Hampshire esophagus aspirate Illumina NextSeq University of New Hampshire 828.1x 99.87 0.2 100 0.06 GCF_030546305.1 JAUONR01 2005 2094 2094 43 3 42 1 Streptococcus_oralis_HMT_071_398_707 GCA_030583585.1 HMT-597 K07G-Be Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-597 Bradyrhizobium elkanii K07G-Be 2 9809455 63.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/583/585/GCA_030583585.1_ASM3058358v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii PRJNA962160 29448 SAMN34405180 ASM3058358v1 Complete Genome HGAP4 v. 7.0.1 2023-04-27T14:36:17.070 USA: Delaware root nodule PacBio RSII VEIL Bradyrhizobium group 64.6x 99.53 99.89 0.2 100 4.3 GCF_030583585.1 9372 9494 9494 64 3 54 1 Bradyrhizobium_elkanii_homd_HMT_597 GCA_030584725.1 HMT-597 K03I-Be Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-597 Bradyrhizobium elkanii K03I-Be 1 9249796 63.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/584/725/GCA_030584725.1_ASM3058472v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii PRJNA962161 29448 SAMN34405179 ASM3058472v1 Complete Genome HGAP3 v. 2.3.0 2023-04-27T14:36:17.060 USA: Delaware root nodule PacBio RSII VEIL Bradyrhizobium group 84.1x 96.31 99.01 0.1 100 2.53 GCF_030584725.1 8709 8834 8834 68 3 53 1 Bradyrhizobium_elkanii_homd_HMT_597 GCA_030584765.1 HMT-597 S07J-Be Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-597 Bradyrhizobium elkanii S07J-Be 1 9563136 63.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/584/765/GCA_030584765.1_ASM3058476v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii PRJNA962168 29448 SAMN34405182 ASM3058476v1 Complete Genome HGAP4 v. 7.0.1 2023-04-27T14:36:17.093 USA: Delaware root nodule PacBio RSII VEIL Bradyrhizobium group 60.1x 99.83 100 0.3 100 3.24 GCF_030584765.1 9126 9245 9245 59 3 56 1 Bradyrhizobium_elkanii_homd_HMT_597 GCA_030585185.1 HMT-597 K03D-Be Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-597 Bradyrhizobium elkanii K03D-Be 3 9982772 63.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/585/185/GCA_030585185.1_ASM3058518v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii PRJNA962162 29448 SAMN34405178 ASM3058518v1 Complete Genome HGAP4 v. 7.0.1 2023-04-27T14:36:17.050 USA: Delaware root nodule PacBio RSII VEIL Bradyrhizobium group 170.1x 96.32 99.96 0.25 100 4.16 GCF_030585185.1 9353 9488 9488 76 3 55 1 Bradyrhizobium_elkanii_homd_HMT_597 GCA_030585205.1 HMT-597 S05J-Be Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-597 Bradyrhizobium elkanii S05J-Be 2 9644547 63.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/585/205/GCA_030585205.1_ASM3058520v1 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium;s__Bradyrhizobium elkanii PRJNA962169 29448 SAMN34405181 ASM3058520v1 Complete Genome HGAP4 v. 7.0.1 2023-04-27T14:36:17.080 USA: Delaware root nodule PacBio RSII VEIL Bradyrhizobium group 132.5x 99.46 100 0.3 100 1.93 GCF_030585205.1 9054 9169 9169 60 3 51 1 Bradyrhizobium_elkanii_homd_HMT_597 GCA_030585585.1 HMT-818 NL02 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-818 Limosilactobacillus reuteri NL02 3 2111986 38.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/585/585/GCA_030585585.1_ASM3058558v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus reuteri_E PRJNA766345 1598 SAMN21843240 ASM3058558v1 Complete Genome flye v. v2.5; canu v. v1.7.1 2021-09-26T07:46:05.562 China: hohhot Illumina NovaSeq; PacBio Sequel Inner Mongolia 617.7x 96.87 99.46 0 99.99 0.22 GCF_030585585.1 2046 2179 2179 45 18 69 1 Limosilactobacillus_reuteri_homd_HMT_818 GCA_030586545.1 HMT-686 P28C7 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans P28C7 23 2010966 36.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/586/545/GCA_030586545.1_ASM3058654v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA997996 1309 SAMN36694945 ASM3058654v1 Scaffold SPAdes v. ABR-2022 2023-07-24T12:40:16.913 Colombia:Medellin, Antioquia dental Illumina NovaSeq Universidad de Antioquia 1.0x 99.1 100 0.56 100 0.17 GCF_030586545.1 JAUQWG01 1899 1993 1993 40 5 48 1 Streptococcus_mutans_homd_HMT_686 GCA_030586725.1 HMT-767 SSSC01 Named Cultivated Oral (Abundance: Scarce) HMT-767 Streptococcus sinensis SSSC01 50 2134166 42.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/586/725/GCA_030586725.1_ASM3058672v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sinensis PRJNA975723 176090 SAMN35344470 ASM3058672v1 Contig SPAdes v. 3.15.4 2023-05-24T04:51:04.743 China Illumina NovaSeq Genoxor Medicial&Science Technology 50.0x 96.99 99.63 0.12 100 0.16 GCF_030586725.1 JASKOR01 2016 2093 2093 35 3 38 1 Streptococcus_sinensis_homd_HMT_767 GCA_030644185.1 HMT-852 F0489 Named** Cultivated Oral (Abundance: High) HMT-852 Actinomyces massiliensis F0489 1 3476513 67.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/185/GCA_030644185.1_ASM3064418v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces massiliensis PRJNA282954 461393 SAMN35884266 ASM3064418v1 Complete Genome Pacbio MA v. 10.1.0.119588 2023-06-24T09:47:06.477 USA: Boston, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 141.0x 98.17 99.96 2.07 99.99 0.77 GCF_030644185.1 2939 3023 3023 21 9 53 1 Actinomyces_massiliensis_homd_HMT_852 GCA_030644205.1 HMT-691 ATCC 700924 Named Cultivated Oral (Abundance: Low) HMT-691 Mogibacterium neglectum ATCC 700924 3 1747241 40.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/205/GCA_030644205.1_ASM3064420v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium neglectum PRJNA282954 114528 SAMN35884268 ASM3064420v1 Complete Genome Pacbio MA v. 10.1.0.119588 2023-06-24T09:56:04.763 Sweden: Umea human oral cavity PacBio Sequel The Forsyth Institute 263.0x 99.29 0 99.26 0.24 GCF_030644205.1 1609 1672 1672 13 6 43 1 GCA_030644225.1 HMT-139 ATCC 43527 Named Cultivated Oral (Abundance: Low) HMT-139 Selenomonas dianae ATCC 43527 1 2391311 56.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/225/GCA_030644225.1_ASM3064422v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda dianae PRJNA282954 135079 SAMN35889122 ASM3064422v1 Complete Genome Pacbio MA v. 10.1.0.119588 2023-06-24T10:14:06.787 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 300.0x 99.99 99.65 0.05 99.87 0.4 GCF_030644225.1 2206 2299 2299 23 12 57 1 GCA_030644245.1 HMT-120 F0718 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus F0718 1 2497780 32.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/245/GCA_030644245.1_ASM3064424v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJNA282954 1283 SAMN35889141 ASM3064424v1 Complete Genome Pacbio MA v. 10.1.0.119588 2023-06-24T10:17:06.030 USA: Cambridge, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 229.0x 99.12 99.5 0 99.92 0.1 GCF_030644245.1 2397 2572 2572 92 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_030644325.1 HMT-225 HMT-225 Unnamed Cultivated Oral (Abundance: Medium) HMT-225 Leptotrichia sp. HMT-225 HMT-225 1 2452811 29.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/325/GCA_030644325.1_ASM3064432v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia massiliensis PRJNA282954 3058373 SAMN35884267 ASM3064432v1 Complete Genome Pacbio MA v. 10.1.0.119588 2023-06-24T09:52:06.386 USA: Boston, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 455.0x 100 1.7 99.99 0.3 GCF_030644325.1 2272 2348 2348 14 15 46 1 Leptotrichia_sp_HMT_225_homd_HMT_225 GCA_030644345.1 HMT-178 F0543 Named Cultivated Oral (Abundance: Low) HMT-178 Schaalia hongkongensis F0543 1 2728238 70.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/345/GCA_030644345.1_ASM3064434v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia hongkongensis PRJNA282954 3059029 SAMN35889121 ASM3064434v1 Complete Genome Pacbio MA v. 10.1.0.119588 2023-06-24T10:09:05.730 USA: Boston, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 314.0x 100 0.47 99.94 0.12 2290 2358 2358 7 6 54 1 Schaalia_hongkongensis_homd_HMT_178 GCA_030644365.1 HMT-172 F0311 Unnamed Cultivated Oral (Abundance: High) HMT-172 Schaalia sp. HMT-172 F0311 1 2533704 66.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/365/GCA_030644365.1_ASM3064436v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000466265 PRJNA282954 3059028 SAMN35889120 ASM3064436v1 Complete Genome Pacbio MA v. 10.1.0.119588 2023-06-24T10:04:05.690 USA: Blacksberg, Virginia human oral cavity PacBio Sequel The Forsyth Institute 262.0x 100 0.47 99.99 0.06 GCF_030644365.1 2063 2132 2132 9 9 50 1 Schaalia_sp_HMT_172_homd_HMT_172 GCA_030644385.1 HMT-097 F0698 Unnamed Cultivated Oral (Abundance: Medium) HMT-097 Moryella sp. HMT-097 F0698 1 2151431 55.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/385/GCA_030644385.1_ASM3064438v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Moryella;s__Moryella sp030644385 PRJNA282954 3059030 SAMN35889517 ASM3064438v1 Complete Genome Pacbio MA v. 10.1.0.119588 2023-06-24T11:03:06.510 USA: Cambridge, Massachusetts human oral cavity PacBio Sequel The Forsyth Institute 488.0x 98.73 0.63 100 0.79 GCF_030644385.1 1854 1931 1931 10 15 51 1 GCA_030644965.1 HMT-621 NJ1914215 Named Cultivated Pathogen (Abundance: Scarce) HMT-621 Neisseria gonorrhoeae NJ1914215 1 2216433 52.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/965/GCA_030644965.1_ASM3064496v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria gonorrhoeae PRJNA916595 485 SAMN32487322 ASM3064496v1 Complete Genome FALCON v. 0.3.0 2022-12-28T23:57:04.696 China: Nanjing urethral discharge PacBio Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College 648.0x 99.34 99.82 0.21 99.99 0.13 GCF_030644965.1 2214 2304 2304 21 12 56 1 Neisseria_gonorrhoeae_homd_HMT_621 GCA_030675975.1 HMT-619 yellow_1 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis yellow_1 104 2376358 48.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/675/975/GCA_030675975.1_ASM3067597v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA847540 837 SAMN28937641 ASM3067597v1 Scaffold CLC NGS Cell v. 12 2022-06-09T10:58:03.980 Netherlands oral cavity from patient with periodontitis Illumina MiSeq universitair medish centrum groningen 72.0x 98.46 99.92 0.1 100 0.05 GCF_030675975.1 JAMZRC01 2012 2084 2084 21 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_030676125.1 HMT-619 grey_1 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis grey_1 119 2358334 48.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/676/125/GCA_030676125.1_ASM3067612v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJNA847540 837 SAMN28937640 ASM3067612v1 Scaffold CLC NGS Cell v. 12 2022-06-09T10:58:03.967 Netherlands oral cavity from patient with periodontitis Illumina MiSeq universitair medish centrum groningen 76.0x 98.48 99.92 0.1 99.99 0.04 GCF_030676125.1 JAMZRD01 2003 2076 2076 21 4 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_030676575.1 HMT-644 SMC7156 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius SMC7156 11 1978687 37.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/676/575/GCA_030676575.1_ASM3067657v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJNA994491 1338 SAMN36787851 ASM3067657v1 Contig SPAdes v. v3.13.0 2023-08-01T15:26:04.255 USA: NH Illumina NovaSeq Dartmouth College 855.0x 98.35 99.88 0 100 0.27 GCF_030676575.1 JAUUIL01 1881 1967 1967 36 5 44 1 Streptococcus_intermedius_homd_HMT_644 GCA_030676655.1 HMT-576 SMC7155 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus SMC7155 37 1826913 37.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/676/655/GCA_030676655.1_ASM3067665v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJNA994491 76860 SAMN36787849 ASM3067665v1 Contig SPAdes v. v3.13.0 2023-08-01T15:26:04.232 USA: NH Illumina NovaSeq Dartmouth College 908.0x 99.99 98.64 0.35 99.99 0.11 GCF_030676655.1 JAUUIN01 1744 1862 1862 72 5 40 1 Streptococcus_constellatus_homd_HMT_576 GCA_030676835.1 HMT-543 SMC5342 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus SMC5342 46 2186043 38.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/676/835/GCA_030676835.1_ASM3067683v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus whileyi PRJNA994491 1328 SAMN36787850 ASM3067683v1 Contig SPAdes v. v3.13.0 2023-08-01T15:26:04.244 USA: NH Illumina NovaSeq Dartmouth College 702.0x 99.57 99.29 0.47 99.96 0.49 GCF_030676835.1 JAUUIM01 2143 2243 2243 50 5 44 1 Streptococcus_anginosus_homd_HMT_543 GCA_030721705.1 HMT-818 RE225 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-818 Limosilactobacillus reuteri RE225 2 2280129 38.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/721/705/GCA_030721705.1_ASM3072170v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus reuteri_G PRJNA995515 1598 SAMN36470972 ASM3072170v1 Complete Genome HGAP v. v4; CANU v. v1.7.1; pilon v. v1.18 2023-07-17T08:12:04.323 China:Ningbo gastrointestinal tract Illumina NovaSeq; Oxford Nanopore Ningbo University 616.0x 96.47 98.09 0.55 99.89 0.21 GCF_030721705.1 2192 2376 2376 95 18 70 1 Limosilactobacillus_reuteri_homd_HMT_818 GCA_030739475.1 HMT-686 P21S6 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans P21S6 18 1972578 36.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/739/475/GCA_030739475.1_ASM3073947v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA961197 1309 SAMN34395302 ASM3073947v1 Contig SPAdes v. APRIL 2022 2023-04-27T07:34:24.470 Colombia: Medellin teeth Illumina NovaSeq Universidad de Antioquia 256.3x 99.29 100 0 100 0.07 GCF_030739475.1 JASAUL01 1835 1936 1936 42 6 52 1 Streptococcus_mutans_homd_HMT_686 GCA_030739515.1 HMT-686 P20MB6 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans P20MB6 20 1981669 36.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/739/515/GCA_030739515.1_ASM3073951v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA961197 1309 SAMN34403670 ASM3073951v1 Contig SPAdes v. APR-2022 2023-04-27T12:39:29.040 Colombia: Medellin teeth Illumina NovaSeq Universidad de Antioquia 181.4x 99.3 100 0 100 0.09 GCF_030739515.1 JASCPY01 1844 1929 1929 28 6 50 1 Streptococcus_mutans_homd_HMT_686 GCA_030739525.1 HMT-686 P18C3 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans P18C3 21 1981793 36.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/739/525/GCA_030739525.1_ASM3073952v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA961197 1309 SAMN34403493 ASM3073952v1 Scaffold SPAdes v. APR-2022 2023-04-27T12:20:05.146 Colombia: Medellin teeth Illumina NovaSeq Universidad de Antioquia 227.8x 99.09 100 0.37 100 0.1 GCF_030739525.1 JASCPX01 1850 1946 1946 43 4 48 1 Streptococcus_mutans_homd_HMT_686 GCA_030739555.1 HMT-686 P28MB7 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans P28MB7 31 2026624 36.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/739/555/GCA_030739555.1_ASM3073955v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJNA961197 1309 SAMN34403517 ASM3073955v1 Scaffold SPAdes v. APR-2022 2023-04-27T12:20:22.756 Colombia: Medellin teeth Illumina NovaSeq Universidad de Antioquia 187.8x 99.1 100 0.45 100 0.05 GCF_030739555.1 JASCPW01 1895 2013 2013 64 5 48 1 Streptococcus_mutans_homd_HMT_686 GCA_030770265.1 HMT-568 NCIMB 15471 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-568 Lacticaseibacillus casei NCIMB 15471 1 3055873 48.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/770/265/GCA_030770265.1_ASM3077026v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus casei PRJNA1002950 3068305 SAMN36868838 ASM3077026v1 Complete Genome flye v. 2.9; Newbler v. 2.8 2023-08-07T09:12:04.820 Austria grass silage Oxford Nanopore GridION; Illumina MiSeq Bielefeld University 502.4x 99.46 1.18 99.99 0.38 GCF_030770265.1 2792 2895 2895 28 15 59 1 Lacticaseibacillus_casei_homd_HMT_568 GCA_030770295.1 HMT-568 NCIMB 15473 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-568 Lacticaseibacillus casei NCIMB 15473 1 3134053 47.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/770/295/GCA_030770295.1_ASM3077029v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus casei PRJNA1002952 3068306 SAMN36868840 ASM3077029v1 Complete Genome flye v. 2.9; Newbler v. 2.8 2023-08-07T09:12:06.520 Austria corn silage Oxford Nanopore GridION; Illumina MiSeq Bielefeld University 372.4x 99.46 1.72 99.93 0.18 GCF_030770295.1 2906 3010 3010 28 15 60 1 Lacticaseibacillus_casei_homd_HMT_568 GCA_030811115.1 HMT-806 DSM 13989 Named Cultivated Oral (Abundance: Scarce) HMT-806 Olsenella profusa DSM 13989 1 2616809 64.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/811/115/GCA_030811115.1_ASM3081111v1 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_F;s__Olsenella_F profusa PRJNA708479 997349 SAMN18242992 ASM3081111v1 Contig HGAP v. 4 (1.0) 2021-03-10T12:24:05.043 United Kingdom:Guys Hospital, missing PacBio DOE Joint Genome Institute 369.0x 100 0 99.96 0.64 GCF_030811115.1 JAUSQK01 2401 2469 2469 15 3 50 0 Olsenella_profusa_homd_HMT_806 GCA_030812115.1 HMT-717 DS3943 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-717 Variovorax paradoxus DS3943 30 7076942 66.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/812/115/GCA_030812115.1_ASM3081211v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax;s__Variovorax paradoxus_C PRJNA709192 436515 SAMN18243415 ASM3081211v1 Contig SPAdes v. 3.14.1 2021-03-10T12:43:31.606 missing missing Illumina DOE Joint Genome Institute 212.0x 87.96 100 0.56 100 0.6 GCF_030812115.1 JAUSSC01 6489 6588 6588 31 3 64 1 Variovorax_paradoxus_homd_HMT_717 GCA_030815625.1 HMT-717 CRF3-Va-1 W1I1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-717 Variovorax paradoxus CRF3-Va-1 W1I1 1 7065066 66.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/815/625/GCA_030815625.1_ASM3081562v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax;s__Variovorax paradoxus_C PRJNA958319 3042309 SAMN35085406 ASM3081562v1 Contig Flye v. 2.8.3 2023-05-15T11:48:12.386 USA: Washington, Lind Dryland missing PacBio DOE Joint Genome Institute 22.0x 100 0.23 100 0.24 GCF_030815625.1 JAUSWZ01 6427 6523 6523 31 6 58 1 Variovorax_paradoxus_homd_HMT_717 GCA_030824905.1 HMT-022 RAGGC_297 Named Cultivated Oral (Abundance: High) HMT-022 Lautropia mirabilis RAGGC_297 152 3187093 65.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/824/905/GCA_030824905.1_ASM3082490v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia mirabilis PRJNA872116 47671 SAMN31428382 ASM3082490v1 Scaffold SPAdes v. 3.15 2022-10-24T13:21:05.706 USA human skin Illumina NovaSeq NHGRI/NIH 17.4x 96.38 95.1 0 94.74 0.1 JAPJQY01 2631 2689 2689 12 0 46 0 Lautropia_mirabilis_homd_HMT_022 GCA_030825185.1 HMT-593 RAGGC_219 Named Cultivated Oral (Abundance: Medium) HMT-593 Mogibacterium diversum RAGGC_219 102 1546418 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/825/185/GCA_030825185.1_ASM3082518v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium diversum PRJNA872116 114527 SAMN31428367 ASM3082518v1 Scaffold SPAdes v. 3.15 2022-10-24T13:21:05.546 USA human gut Illumina NovaSeq NHGRI/NIH 9.4x 96.88 95.74 0.47 91.48 0.18 GCF_030825185.1 JAPJQJ01 1366 1400 1400 12 0 21 1 Mogibacterium_diversum_homd_HMT_593 GCA_030825475.1 HMT-017 RAGGC_152 Named Cultivated Skin (Abundance: High) HMT-017 Anaerococcus octavius RAGGC_152 76 1719998 30.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/825/475/GCA_030825475.1_ASM3082547v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus octavius PRJNA872116 54007 SAMN31428354 ASM3082547v1 Scaffold SPAdes v. 3.15 2022-10-24T13:21:05.420 USA human skin Illumina NovaSeq NHGRI/NIH 73.0x 97.79 98.78 0.91 92.92 0.09 GCF_030825475.1 JAPJPW01 1630 1681 1681 19 0 31 1 Anaerococcus_octavius_homd_HMT_017 GCA_030825925.1 HMT-427 RAGGC_103 Unnamed Cultivated Oral (Abundance: Medium) HMT-427 Abiotrophia sp. HMT-427 RAGGC_103 45 1825944 46.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/825/925/GCA_030825925.1_ASM3082592v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;s__Abiotrophia sp001815865 PRJNA872116 76631 SAMN31428331 ASM3082592v1 Scaffold SPAdes v. 3.15 2022-10-24T13:21:05.183 USA human skin Illumina NovaSeq NHGRI/NIH 12.8x 97.78 0 98.68 0.49 GCF_030825925.1 JAPJOZ01 1667 1706 1706 19 0 19 1 Abiotrophia_sp_HMT_427_homd_HMT_427 GCA_030826125.1 HMT-299 RAGGC_60 Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis RAGGC_60 30 2440093 38.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/826/125/GCA_030826125.1_ASM3082612v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJNA872116 425941 SAMN31428321 ASM3082612v1 Scaffold SPAdes v. 3.15 2022-10-24T13:21:05.073 USA human skin Illumina NovaSeq NHGRI/NIH 20.7x 96.84 99.32 0 99.91 0.02 GCF_030826125.1 JAPJOP01 1870 1916 1916 5 0 40 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_030826365.1 HMT-114 RAGGC_41 Named Cultivated Skin (Abundance: High) HMT-114 Cutibacterium granulosum RAGGC_41 49 2090058 64.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/826/365/GCA_030826365.1_ASM3082636v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium granulosum PRJNA872116 33011 SAMN31428310 ASM3082636v1 Scaffold SPAdes v. 3.15 2022-10-24T13:21:04.940 USA human skin Illumina NovaSeq NHGRI/NIH 13.7x 96.56 98.79 0 98.35 0.71 GCF_030826365.1 JAPJOE01 1759 1828 1828 22 0 46 1 Cutibacterium_granulosum_homd_HMT_114 GCA_030826425.1 HMT-681 RAGGC_32 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 RAGGC_32 59 2308735 59.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/826/425/GCA_030826425.1_ASM3082642v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA872116 43675 SAMN31428306 ASM3082642v1 Scaffold SPAdes v. 3.15 2022-10-24T13:21:04.903 USA human skin Illumina NovaSeq NHGRI/NIH 19.5x 95.32 99.33 0 100 0.5 GCF_030826425.1 JAPJOA01 1801 1869 1869 14 4 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_030826425.1 HMT-681 RAGGC_32 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 RAGGC_32 59 2308735 59.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/826/425/GCA_030826425.1_ASM3082642v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJNA872116 43675 SAMN31428306 ASM3082642v1 Scaffold SPAdes v. 3.15 2022-10-24T13:21:04.903 USA human skin Illumina NovaSeq NHGRI/NIH 19.5x 95.32 99.33 0 100 0.5 GCF_030826425.1 JAPJOA01 1801 1869 1869 14 4 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_030826605.1 HMT-710 RAGGC_15 Named NVP Cultivated Oral (Abundance: Medium) HMT-710 Schaalia dentiphila RAGGC_15 229 2113814 65.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/826/605/GCA_030826605.1_ASM3082660v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia dentiphila PRJNA872116 2953801 SAMN31428298 ASM3082660v1 Scaffold SPAdes v. 3.15 2022-10-24T13:21:04.820 USA human skin Illumina NovaSeq NHGRI/NIH 13.8x 87.22 1.67 90.6 0.45 JAPJNS01 1849 1893 1893 9 0 34 1 Schaalia_dentiphila_homd_HMT_710 GCA_030839305.1 HMT-118 N1156.8 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus N1156.8 10 1805260 45.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/839/305/GCA_030839305.1_ASM3083930v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA970820 218538 SAMN36703652 ASM3083930v1 Contig metaSPAdes v. 3.15.5 2023-07-25T14:43:04.676 USA feces Illumina University of Illinois at Urbana Champaign 97.8 98.1 0.63 100 0.18 GCF_030839305.1 JAUUMQ01 1688 1791 1791 53 0 49 1 Dialister_invisus_homd_HMT_118 GCA_030842425.1 HMT-118 N1170.8 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus N1170.8 24 1791249 45.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/842/425/GCA_030842425.1_ASM3084242v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA970820 218538 SAMN36703783 ASM3084242v1 Contig metaSPAdes v. 3.15.5 2023-07-25T14:43:06.150 USA feces Illumina University of Illinois at Urbana Champaign 97.75 98.1 0.63 99.86 0.12 GCF_030842425.1 JAUURR01 1719 1798 1798 29 0 49 1 Dialister_invisus_homd_HMT_118 GCA_030843135.1 HMT-118 N1167.7 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus N1167.7 24 1807687 45.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/843/135/GCA_030843135.1_ASM3084313v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJNA970820 218538 SAMN36703742 ASM3084313v1 Contig metaSPAdes v. 3.15.5 2023-07-25T14:43:05.660 USA feces Illumina University of Illinois at Urbana Champaign 97.68 98.1 1.92 99.97 2.21 GCF_030843135.1 JAUUQC01 1706 1789 1789 24 2 56 1 Dialister_invisus_homd_HMT_118 GCA_030843185.1 HMT-560 N1167.1 Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae N1167.1 74 3035637 51.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/843/185/GCA_030843185.1_ASM3084318v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJNA970820 28126 SAMN36703741 ASM3084318v1 Contig metaSPAdes v. 3.15.5 2023-07-25T14:43:05.650 USA feces Illumina University of Illinois at Urbana Champaign 98.66 98.64 0.34 99.81 0.02 GCF_030843185.1 JAUUQB01 2443 2497 2497 7 0 46 1 Segatella_buccae_homd_HMT_560 GCA_030844905.1 HMT-072 821F Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 821F 4 2808886 59.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/844/905/GCA_030844905.1_ASM3084490v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA962523 43770 SAMN34403531 ASM3084490v1 Scaffold SPAdes v. 3.13.1 2023-04-27T12:33:24.947 United Kingdom: Newcastle upon Tissue Illumina NextSeq Northumbria University 82.0x 98.61 99.23 0.83 99.98 0.9 GCF_030844905.1 JASNML01 2571 2643 2643 9 8 54 1 Corynebacterium_striatum_homd_HMT_072 GCA_030844935.1 HMT-072 821A Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 821A 3 2993035 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/844/935/GCA_030844935.1_ASM3084493v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA962523 43770 SAMN34403532 ASM3084493v1 Scaffold SPAdes v. 3.13.1 2023-04-27T12:33:24.960 United Kingdom: Newcastle upon Sphenoid swab Illumina NextSeq Northumbria University 102.0x 98.64 99.23 0.92 100 0.98 GCF_030844935.1 JASNMM01 2771 2843 2843 11 5 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_030844955.1 HMT-072 640X Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 640X 2 2868045 59.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/844/955/GCA_030844955.1_ASM3084495v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA962523 43770 SAMN34403529 ASM3084495v1 Scaffold SPAdes v. 3.13.1 2023-04-27T12:33:24.927 United Kingdom: Newcastle upon Corneal Scrape Illumina NextSeq Northumbria University 74.0x 97.72 99.23 0.26 99.99 0.21 GCF_030844955.1 JASNMJ01 2633 2704 2704 8 6 56 1 Corynebacterium_striatum_homd_HMT_072 GCA_030844975.1 HMT-072 719S Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 719S 5 2980774 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/844/975/GCA_030844975.1_ASM3084497v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA962523 43770 SAMN34403530 ASM3084497v1 Scaffold SPAdes v. 3.13.1 2023-04-27T12:33:24.937 United Kingdom: Newcastle upon Pacing wires Illumina NextSeq Northumbria University 69.0x 98.61 99.23 0.79 100 1.78 GCF_030844975.1 JASNMK01 2798 2871 2871 9 6 57 1 Corynebacterium_striatum_homd_HMT_072 GCA_030844995.1 HMT-072 391E Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 391E 5 2998855 59.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/844/995/GCA_030844995.1_ASM3084499v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA962523 43770 SAMN34403533 ASM3084499v1 Scaffold SPAdes v. 3.13.1 2023-04-27T12:33:24.970 United Kingdom: Newcastle upon urine Illumina NextSeq Northumbria University 85.0x 98.64 99.67 0.92 100 0.98 GCF_030844995.1 JASNMN01 2782 2854 2854 11 5 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_030845015.1 HMT-072 824M Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 824M 4 2933916 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/845/015/GCA_030845015.1_ASM3084501v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA962523 43770 SAMN34403527 ASM3084501v1 Scaffold SPAdes v. 3.13.1 2023-04-27T12:33:24.903 United Kingdom: Newcastle upon blood Illumina NextSeq Northumbria University 105.0x 98.65 99.23 0.65 99.96 0.89 GCF_030845015.1 JASNMH01 2741 2817 2817 10 8 57 1 Corynebacterium_striatum_homd_HMT_072 GCA_030845035.1 HMT-072 600M Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 600M 2 2921682 59.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/845/035/GCA_030845035.1_ASM3084503v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA962523 43770 SAMN34403528 ASM3084503v1 Scaffold SPAdes v. 3.13.1 2023-04-27T12:33:24.917 United Kingdom: Newcastle upon bone Illumina NextSeq Northumbria University 81.0x 98.63 99.67 0.79 99.99 0.9 GCF_030845035.1 JASNMI01 2716 2787 2787 9 6 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_030845055.1 HMT-072 708C Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 708C 4 2921848 59.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/845/055/GCA_030845055.1_ASM3084505v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJNA962523 43770 SAMN34403526 ASM3084505v1 Scaffold SPAdes v. 3.13.1 2023-04-27T12:33:24.890 United Kingdom: Newcastle upon Joint fluid Illumina NextSeq Northumbria University 88.0x 98.63 99.23 0.79 99.99 0.88 GCF_030845055.1 JASNMG01 2708 2779 2779 9 6 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_030846755.1 HMT-152 CICC 20372 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-152 Streptococcus thermophilus CICC 20372 1 1852351 39.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/846/755/GCA_030846755.1_ASM3084675v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus PRJNA1005081 1308 SAMN36973155 ASM3084675v1 Complete Genome SOAPdenovo v. V2.04 OR JULY-2022 2023-08-14T04:45:05.590 China: Inner Mongolia fermented milk products Illumina HiSeq; PacBio Institute of Microbiology, Chinese Academy of Sciences 492.0x 98.7 99.89 0.15 99.98 0.32 GCF_030846755.1 1938 2089 2089 78 15 57 1 Streptococcus_thermophilus_homd_HMT_152 GCA_030848285.1 HMT-963 MmAkkUCB1 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-963 Akkermansia muciniphila MmAkkUCB1 1 2742000 55.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/848/285/GCA_030848285.1_ASM3084828v1 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila PRJNA913185 239935 SAMN32279753 ASM3084828v1 Complete Genome Flye v. 2.7.1 2022-12-16T17:23:07.840 USA: Berkeley, California Mouse feces PacBio Sequel Duke University 176.0x 99.06 97.96 0.68 99.98 0.23 GCF_030848285.1 2283 2353 2353 6 9 54 1 Akkermansia_muciniphila_homd_HMT_963 GCA_030875795.1 HMT-973 GP102 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-973 Parabacteroides distasonis GP102 1 5387833 44.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/875/795/GCA_030875795.1_ASM3087579v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis PRJNA1002373 823 SAMN36841965 ASM3087579v1 Complete Genome Unicycler v. 0.4.8 2023-08-04T15:49:04.060 USA Illumina MiSeq; Oxford Nanopore MinION NCTR/FDA 119.0x 97.65 99.23 0.51 100 0.67 GCF_030875795.1 4597 4727 4727 24 21 84 1 Parabacteroides_distasonis_homd_HMT_973 GCA_030913345.1 HMT-282 A22 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-282 Acinetobacter junii A22 2 3536196 38.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/913/345/GCA_030913345.1_ASM3091334v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter junii PRJNA1003222 1204684 SAMN36883922 ASM3091334v1 Complete Genome Canu v. version 2.04 2023-08-07T22:49:04.086 China: Longyan antimony mine Oxford Nanopore Fujian Agriculture and Forestry University 100.0x 100 0.27 100 0.32 GCF_030913345.1 3477 3615 3615 45 18 74 1 Acinetobacter_junii_homd_HMT_282 GCA_030938875.1 HMT-945 OHS0002 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus OHS0002 267 1847273 40.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/938/875/GCA_030938875.1_ASM3093887v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus PRJNA717815 735 SAMN34352703 ASM3093887v1 Contig SPAdes v. 3.15.3 2023-04-24T12:33:05.847 Brazil: Amazonas, Manaus oral cavity Illumina HiSeq Amazonas State University 17.0x 95.79 97.84 2.01 99.58 2.5 GCF_030938875.1 JAUPSI01 1665 1727 1727 21 1 40 0 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_031082435.1 HMT-893 CNGBCC1803727 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 CNGBCC1803727 39 3159402 68.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/082/435/GCA_031082435.1_ASM3108243v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA853867 544580 SAMN29406500 ASM3108243v1 Contig assembly-scan v. 0.4.1; Shovill v. 1.1.0 2022-06-28T23:29:03.453 China: Shenzhen healthy feces BGISEQ China National GeneBank 634.0x 96.38 100 0.95 100 0.12 GCF_031082435.1 JAMZMF01 2587 2661 2661 16 4 53 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_031082435.1 HMT-893 CNGBCC1803727 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 CNGBCC1803727 39 3159402 68.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/082/435/GCA_031082435.1_ASM3108243v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA853867 544580 SAMN29406500 ASM3108243v1 Contig assembly-scan v. 0.4.1; Shovill v. 1.1.0 2022-06-28T23:29:03.453 China: Shenzhen healthy feces BGISEQ China National GeneBank 634.0x 96.38 100 0.95 100 0.12 GCF_031082435.1 JAMZMF01 2587 2661 2661 16 4 53 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_031082475.1 HMT-169 CNGBCC1804106 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 CNGBCC1804106 33 3003454 68.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/082/475/GCA_031082475.1_ASM3108247v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA853867 544580 SAMN29406501 ASM3108247v1 Contig assembly-scan v. 0.4.1; Shovill v. 1.1.0 2022-06-28T23:29:03.463 China: Shenzhen healthy feces BGISEQ China National GeneBank 953.0x 95.18 100 0.95 100 0.2 GCF_031082475.1 JAMZMG01 2460 2531 2531 13 3 54 1 Actinomyces_oris_clade_169_homd_HMT_169 GCA_031082475.1 HMT-169 CNGBCC1804106 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 CNGBCC1804106 33 3003454 68.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/082/475/GCA_031082475.1_ASM3108247v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJNA853867 544580 SAMN29406501 ASM3108247v1 Contig assembly-scan v. 0.4.1; Shovill v. 1.1.0 2022-06-28T23:29:03.463 China: Shenzhen healthy feces BGISEQ China National GeneBank 953.0x 95.18 100 0.95 100 0.2 GCF_031082475.1 JAMZMG01 2460 2531 2531 13 3 54 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_031142805.1 HMT-758 IsoGale022 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis IsoGale022 50 2349329 43.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/142/805/GCA_031142805.1_ASM3114280v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_A PRJNA813203 2923524 SAMN26455294 ASM3114280v1 Contig Unicycler v. 0.4.8 2022-03-06T05:18:04.643 Germany bile duct of patients with Primary sclerosing cholangitis (PSC) Illumina NovaSeq Helmholtz Centre for Infection Research, HZI 55.0x 100 0.12 99.96 0.09 GCF_031142805.1 JAKZJI01 2271 2374 2374 55 3 44 1 Streptococcus_sanguinis_homd_HMT_758 GCA_031158355.1 HMT-552 OUH_B21_954616 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum OUH_B21_954616 185 2525795 63.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/158/355/GCA_031158355.1_ASM3115835v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA1009783 33010 SAMN37160329 ASM3115835v1 Contig SPAdes v. 3.15.5 2023-08-28T07:53:04.870 Denmark blood Illumina MiSeq Odense University Hospital 50.0x 98.45 99.34 0.33 100 0.13 GCF_031158355.1 JAVIFC01 2330 2403 2403 23 4 45 1 Cutibacterium_avidum_homd_HMT_552 GCA_031158565.1 HMT-552 OUH_B21_961998 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum OUH_B21_961998 173 2481605 63.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/158/565/GCA_031158565.1_ASM3115856v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA1009783 33010 SAMN37160328 ASM3115856v1 Contig SPAdes v. 3.15.5 2023-08-28T07:53:04.850 Denmark blood Illumina MiSeq Odense University Hospital 50.0x 98.49 100 0.33 100 0.15 GCF_031158565.1 JAVIFB01 2266 2338 2338 23 3 45 1 Cutibacterium_avidum_homd_HMT_552 GCA_031158635.1 HMT-552 OUH_B20_847533 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum OUH_B20_847533 159 2485617 63.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/158/635/GCA_031158635.1_ASM3115863v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA1009783 33010 SAMN37160331 ASM3115863v1 Contig SPAdes v. 3.15.5 2023-08-28T07:53:04.890 Denmark blood Illumina MiSeq Odense University Hospital 50.0x 98.74 98.68 0 99.99 0.12 GCF_031158635.1 JAVIFE01 2285 2355 2355 21 3 45 1 Cutibacterium_avidum_homd_HMT_552 GCA_031158775.1 HMT-552 EB23_41501 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum EB23_41501 61 2547762 63.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/158/775/GCA_031158775.1_ASM3115877v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJNA1009783 33010 SAMN37160330 ASM3115877v1 Contig SPAdes v. 3.15.5 2023-08-28T07:53:04.880 Denmark blood Illumina HiSeq Odense University Hospital 50.0x 98.45 100 0 100 0.13 GCF_031158775.1 JAVIFD01 2355 2429 2429 23 3 47 1 Cutibacterium_avidum_homd_HMT_552 GCA_031190635.1 HMT-476 LMG 5313 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava LMG 5313 1 2195884 49.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/190/635/GCA_031190635.1_ASM3119063v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJNA1009867 28449 SAMN37162767 ASM3119063v1 Complete Genome Flye v. 2.8.1-b1676 2023-08-28T19:05:04.227 USA PacBio Sequel IIe Zymo Research Corporation 1.0x 99.99 99.92 0.34 100 0.44 GCF_031190635.1 2047 2151 2151 35 12 56 1 Neisseria_subflava_homd_HMT_476 GCA_031190775.1 HMT-161 DSM 2007 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula DSM 2007 1 2181623 38.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/190/775/GCA_031190775.1_ASM3119077v1 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJNA1009868 29466 SAMN37162768 ASM3119077v1 Complete Genome Flye v. 2.8.1-b1676 2023-08-28T19:10:03.963 USA PacBio Sequel IIe Zymo Research Corporation 1.0x 99.99 100 0.6 99.99 0.19 GCF_031190775.1 1938 2021 2021 22 12 48 1 Veillonella_parvula_homd_HMT_161 GCA_031191185.1 HMT-693 DSM 13386 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens DSM 13386 6 2684891 42.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/191/185/GCA_031191185.1_ASM3119118v1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJNA1009869 28133 SAMN37162769 ASM3119118v1 Complete Genome Flye v. 2.8.1-b1676 2023-08-28T19:17:03.960 USA PacBio Sequel IIe Zymo Research Corporation 1.0x 99.99 99.31 0 99.95 0.13 GCF_031191185.1 2279 2347 2347 7 12 48 1 Prevotella_nigrescens_homd_HMT_693 GCA_031191205.1 HMT-718 DSM 8978 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae DSM 8978 1 2141689 39.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/191/205/GCA_031191205.1_ASM3119120v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJNA1009870 888828 SAMN37162770 ASM3119120v1 Complete Genome Flye v. 2.8.1-b1676 2023-08-28T19:21:03.890 USA PacBio Sequel IIe Zymo Research Corporation 1.0x 99.99 99.89 0.23 100 1.38 GCF_031191205.1 1975 2107 2107 55 19 57 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_031191225.1 HMT-677 LMG 14557 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis LMG 14557 1 1868860 40.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/191/225/GCA_031191225.1_ASM3119122v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJNA1009871 28037 SAMN37162771 ASM3119122v1 Complete Genome Flye v. 2.8.1-b1676 2023-08-28T19:26:03.670 USA PacBio Sequel IIe Zymo Research Corporation 1.0x 99.99 99.42 0.2 99.99 0.01 GCF_031191225.1 1721 1843 1843 48 12 61 1 Streptococcus_mitis_homd_HMT_677 GCA_031191545.1 HMT-701 LMG 18080 Named Cultivated Oral (Abundance: High) HMT-701 Schaalia odontolytica LMG 18080 1 2455831 64.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/191/545/GCA_031191545.1_ASM3119154v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia odontolytica PRJNA1009872 1660 SAMN37162772 ASM3119154v1 Complete Genome Flye v. 2.8.1-b1676 2023-08-28T19:29:03.607 USA PacBio Sequel IIe Zymo Research Corporation 1.0x 99.99 100 0.47 99.99 0.1 GCF_031191545.1 2057 2126 2126 8 9 51 1 Schaalia_odontolytica_homd_HMT_701 GCA_031191775.1 HMT-587 B-8017 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa B-8017 1 2462892 53.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/191/775/GCA_031191775.1_ASM3119177v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJNA1009873 2047 SAMN37162773 ASM3119177v1 Complete Genome Flye v. 2.8.1-b1676 2023-08-28T19:33:04.423 USA PacBio Sequel IIe Zymo Research Corporation 1.0x 99.99 99.34 0 100 0.1 GCF_031191775.1 2101 2173 2173 14 8 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_031191795.1 HMT-698 LMG 13131 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto LMG 13131 1 2181492 27.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/191/795/GCA_031191795.1_ASM3119179v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA1009874 851 SAMN37162774 ASM3119179v1 Complete Genome Flye v. 2.8.1-b1676 2023-08-28T19:36:03.897 USA PacBio Sequel IIe Zymo Research Corporation 1.0x 99.99 100 0 100 0.09 GCF_031191795.1 2013 2094 2094 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_031192325.1 HMT-755 LMG 11489 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius LMG 11489 1 2195702 40.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/192/325/GCA_031192325.1_ASM3119232v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJNA1009877 1304 SAMN37162776 ASM3119232v1 Complete Genome Flye v. 2.8.1-b1676 2023-08-28T19:42:04.067 USA PacBio Sequel IIe Zymo Research Corporation 1.0x 99.99 99.46 0.15 99.99 0.02 GCF_031192325.1 1993 2108 2108 32 15 67 1 Streptococcus_salivarius_homd_HMT_755 GCA_031203395.1 HMT-537 BCJB3344 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-537 Streptococcus agalactiae BCJB3344 1 2222638 35.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/203/395/GCA_031203395.1_ASM3120339v1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae PRJNA862189 1311 SAMN29959622 ASM3120339v1 Complete Genome Unicycler v. 0.4.6 2022-07-25T19:51:12.517 USA:Texas bone Illumina MiSeq; Oxford Nanopore GridION UTHSC/McGovern Medical School 550.0x 99.01 100 0.18 100 0.49 GCF_031203395.1 2157 2324 2324 65 21 80 1 Streptococcus_agalactiae_homd_HMT_537 GCA_031292905.1 HMT-893 WVU371 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 WVU371 167 3094922 68.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/292/905/GCA_031292905.1_ASM3129290v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA976213 544580 SAMN35360573 ASM3129290v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.820 not applicable Illumina HiSeq University of Malaya 378.0x 96.64 99.53 1.42 99.97 0.62 GCF_031292905.1 JASPEQ01 2597 2670 2670 14 4 54 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_031292905.1 HMT-893 WVU371 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 WVU371 167 3094922 68.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/292/905/GCA_031292905.1_ASM3129290v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA976213 544580 SAMN35360573 ASM3129290v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.820 not applicable Illumina HiSeq University of Malaya 378.0x 96.64 99.53 1.42 99.97 0.62 GCF_031292905.1 JASPEQ01 2597 2670 2670 14 4 54 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_031296445.1 HMT-701 NCTC 9935 Named Cultivated Oral (Abundance: High) HMT-701 Schaalia odontolytica NCTC 9935 23 2435089 64.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/445/GCA_031296445.1_ASM3129644v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia odontolytica PRJNA976213 1660 SAMN35360571 ASM3129644v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.673 not applicable Illumina HiSeq University of Malaya 482.0x 99.99 100 0.47 99.99 0.24 GCF_031296445.1 JASPES01 2057 2120 2120 8 3 51 1 Schaalia_odontolytica_homd_HMT_701 GCA_031296455.1 HMT-893 T14V Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 T14V 40 3163776 68.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/455/GCA_031296455.1_ASM3129645v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA976213 544580 SAMN35360570 ASM3129645v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.610 not applicable Illumina HiSeq University of Malaya 373.0x 99.99 100 0.47 100 0.04 GCF_031296455.1 JASPET01 2599 2671 2671 14 6 51 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_031296455.1 HMT-893 T14V Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 T14V 40 3163776 68.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/455/GCA_031296455.1_ASM3129645v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA976213 544580 SAMN35360570 ASM3129645v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.610 not applicable Illumina HiSeq University of Malaya 373.0x 99.99 100 0.47 100 0.04 GCF_031296455.1 JASPET01 2599 2671 2671 14 6 51 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_031296485.1 HMT-688 NCTC 10951 Named Cultivated Oral (Abundance: Medium) HMT-688 Actinomyces viscosus NCTC 10951 179 3303380 69.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/485/GCA_031296485.1_ASM3129648v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces viscosus PRJNA976213 1656 SAMN35360572 ASM3129648v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.746 not applicable Illumina HiSeq University of Malaya 347.0x 99.97 99.53 1.07 99.96 0.25 GCF_031296485.1 JASPER01 2744 2814 2814 14 2 53 1 Actinomyces_viscosus_homd_HMT_688 GCA_031296505.1 HMT-893 WVU626 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 WVU626 69 3114730 68.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/505/GCA_031296505.1_ASM3129650v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA976213 544580 SAMN35360569 ASM3129650v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.546 not applicable Illumina HiSeq University of Malaya 377.0x 96.6 100 0.47 100 0.13 GCF_031296505.1 JASPEU01 2563 2637 2637 14 5 54 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_031296505.1 HMT-893 WVU626 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 WVU626 69 3114730 68.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/505/GCA_031296505.1_ASM3129650v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA976213 544580 SAMN35360569 ASM3129650v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.546 not applicable Illumina HiSeq University of Malaya 377.0x 96.6 100 0.47 100 0.13 GCF_031296505.1 JASPEU01 2563 2637 2637 14 5 54 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_031296525.1 HMT-701 NCTC 9935 Named Cultivated Oral (Abundance: High) HMT-701 Schaalia odontolytica NCTC 9935 39 2430395 64.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/525/GCA_031296525.1_ASM3129652v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia odontolytica PRJNA976213 1660 SAMN35360566 ASM3129652v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.366 not applicable Illumina HiSeq University of Malaya 489.0x 99.99 100 0.47 99.99 0.24 GCF_031296525.1 JASPEX01 2059 2122 2122 8 3 51 1 Schaalia_odontolytica_homd_HMT_701 GCA_031296555.1 HMT-701 NCTC 9935 Named Cultivated Oral (Abundance: High) HMT-701 Schaalia odontolytica NCTC 9935 38 2431498 64.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/555/GCA_031296555.1_ASM3129655v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia odontolytica PRJNA976213 1660 SAMN35360567 ASM3129655v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.413 not applicable Illumina HiSeq University of Malaya 491.0x 99.99 100 0.47 99.99 0.1 GCF_031296555.1 JASPEW01 2060 2123 2123 8 3 51 1 Schaalia_odontolytica_homd_HMT_701 GCA_031296575.1 HMT-893 C16 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 C16 82 3080381 68.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/575/GCA_031296575.1_ASM3129657v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA976213 544580 SAMN35360564 ASM3129657v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.347 not applicable Illumina HiSeq University of Malaya 377.0x 96.39 100 1.9 100 0.38 GCF_031296575.1 JASPEZ01 2529 2599 2599 14 4 51 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_031296575.1 HMT-893 C16 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 C16 82 3080381 68.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/575/GCA_031296575.1_ASM3129657v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA976213 544580 SAMN35360564 ASM3129657v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.347 not applicable Illumina HiSeq University of Malaya 377.0x 96.39 100 1.9 100 0.38 GCF_031296575.1 JASPEZ01 2529 2599 2599 14 4 51 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_031296595.1 HMT-176 ATCC 12104 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii ATCC 12104 65 3123836 67.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/595/GCA_031296595.1_ASM3129659v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA976213 1655 SAMN35360563 ASM3129659v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.333 not applicable Illumina HiSeq University of Malaya 379.0x 99.98 100 0.47 99.79 0.11 GCF_031296595.1 JASPFA01 2597 2669 2669 16 4 51 1 Actinomyces_naeslundii_homd_HMT_176 GCA_031296615.1 HMT-849 CCUG 34287 Named Cultivated Oral (Abundance: Medium) HMT-849 Actinomyces johnsonii CCUG 34287 50 3344607 67.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/615/GCA_031296615.1_ASM3129661v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces johnsonii PRJNA976213 544581 SAMN35360562 ASM3129661v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.280 not applicable Illumina HiSeq University of Malaya 354.0x 99.99 100 0.95 100 0.32 GCF_031296615.1 JASPFB01 2778 2850 2850 16 3 52 1 Actinomyces_johnsonii_homd_HMT_849 GCA_031296635.1 HMT-144 VPI D163E-3 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 VPI D163E-3 106 3272606 67.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/635/GCA_031296635.1_ASM3129663v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA976213 3050225 SAMN35360561 ASM3129663v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.213 not applicable Illumina HiSeq University of Malaya 358.0x 100 0.95 100 0.05 GCF_031296635.1 JASPFC01 2654 2732 2732 14 4 59 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_031296635.1 HMT-144 VPI D163E-3 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 VPI D163E-3 106 3272606 67.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/635/GCA_031296635.1_ASM3129663v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA976213 3050225 SAMN35360561 ASM3129663v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.213 not applicable Illumina HiSeq University of Malaya 358.0x 100 0.95 100 0.05 GCF_031296635.1 JASPFC01 2654 2732 2732 14 4 59 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_031296655.1 HMT-176 NCTC 10301 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii NCTC 10301 42 3127545 67.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/655/GCA_031296655.1_ASM3129665v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA976213 1655 SAMN35360560 ASM3129665v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.153 not applicable Illumina HiSeq University of Malaya 378.0x 99.99 100 0.47 99.93 0.13 GCF_031296655.1 JASPFD01 2587 2659 2659 16 4 51 1 Actinomyces_naeslundii_homd_HMT_176 GCA_031296675.1 HMT-710 C24 Named NVP Cultivated Oral (Abundance: Medium) HMT-710 Schaalia dentiphila C24 22 2345519 65.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/675/GCA_031296675.1_ASM3129667v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia dentiphila PRJNA976213 3050226 SAMN35360565 ASM3129667v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.356 not applicable Illumina HiSeq University of Malaya 498.0x 97.43 100 0.47 100 0.51 GCF_031296675.1 JASPEY01 2000 2064 2064 9 6 48 1 Schaalia_dentiphila_homd_HMT_710 GCA_031296695.1 HMT-710 NCTC 9931 Named NVP Cultivated Oral (Abundance: Medium) HMT-710 Schaalia dentiphila NCTC 9931 36 2374847 65.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/695/GCA_031296695.1_ASM3129669v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia dentiphila PRJNA976213 3050224 SAMN35360559 ASM3129669v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.080 not applicable Illumina HiSeq University of Malaya 498.0x 99.99 100 0.47 100 0.18 GCF_031296695.1 JASPFE01 2008 2070 2070 9 3 49 1 Schaalia_dentiphila_homd_HMT_710 GCA_031296715.1 HMT-176 NCTC 10301 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii NCTC 10301 106 3119783 67.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/715/GCA_031296715.1_ASM3129671v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJNA976213 1655 SAMN35360558 ASM3129671v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:03.946 not applicable Illumina HiSeq University of Malaya 380.0x 99.99 99.53 0.95 99.9 0.22 GCF_031296715.1 JASPFF01 2618 2689 2689 16 3 51 1 Actinomyces_naeslundii_homd_HMT_176 GCA_031297525.1 HMT-893 VPIIA/6 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 VPIIA/6 56 3146087 68.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/297/525/GCA_031297525.1_ASM3129752v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA976213 544580 SAMN35360568 ASM3129752v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.477 not applicable Illumina HiSeq University of Malaya 378.0x 96.52 100 0.95 100 0.06 GCF_031297525.1 JASPEV01 2555 2625 2625 15 3 51 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_031297525.1 HMT-893 VPIIA/6 Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 VPIIA/6 56 3146087 68.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/297/525/GCA_031297525.1_ASM3129752v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJNA976213 544580 SAMN35360568 ASM3129752v1 Contig Bactopia v. v 1.7.1 2023-05-25T09:17:04.477 not applicable Illumina HiSeq University of Malaya 378.0x 96.52 100 0.95 100 0.06 GCF_031297525.1 JASPEV01 2555 2625 2625 15 3 51 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_034648895.1 HMT-144 ORNL 0101 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 ORNL 0101 2 3445169 67.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/034/648/895/GCA_034648895.1_ASM3464889v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA282954 544580 SAMN35889518 ASM3464889v1 Contig Pacbio MA v. 10.1.0.119588 2023-06-24T11:06:05.836 USA: Oak Ridge, Tennessee human oral cavity PacBio Sequel The Forsyth Institute 265.0x 92.67 100 0.95 100 0.17 GCF_034648895.1 JAXBCZ01 2789 2875 2875 16 9 60 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_034648895.1 HMT-144 ORNL 0101 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 ORNL 0101 2 3445169 67.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/034/648/895/GCA_034648895.1_ASM3464889v1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJNA282954 544580 SAMN35889518 ASM3464889v1 Contig Pacbio MA v. 10.1.0.119588 2023-06-24T11:06:05.836 USA: Oak Ridge, Tennessee human oral cavity PacBio Sequel The Forsyth Institute 265.0x 92.67 100 0.95 100 0.17 GCF_034648895.1 JAXBCZ01 2789 2875 2875 16 9 60 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_035282585.1 HMT-471 CCUG 13096 Unnamed Cultivated Oral (Abundance: Medium) HMT-471 Capnocytophaga sp. HMT-471 ATCC 700970 100 2953506 0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/035/282/585/GCA_035282585.1_ASM3528258v1/ d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sp938029845 PRJNA1055608 1017 SAMN39058926 ASM3528258v1 Contig SPAdes v. 3.15.4 2023-12-21T21:38:04.303 missing Illumina NovaSeq The University of Hong Kong 400 85.68 99.06 0.34 GCF_035282585.1 JAYKBW01 2844 8 3 47 1 Capnocytophaga_sp_HMT_471_homd_HMT_471 GCA_037577715.1 HMT-464 KCOM3157 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3157 3 2116737 27.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/577/715/GCA_037577715.1_ASM3757771v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN22215926 ASM3757771v1 Contig Microbial assembly v. 1 2021-10-11T18:25:04.443 not available oral cavity PacBio Sequel Forsyth Institute 319.0x 92.14 100 0 100 0.29 GCF_037577715.1 JAJAVO01 1967 2045 2045 15 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037577875.1 HMT-202 KCOM1254 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1254 5 2577704 26.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/577/875/GCA_037577875.1_ASM3757787v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 851 SAMN22215924 ASM3757787v1 Contig Microbial assembly v. 1 2021-10-11T18:25:04.417 not available oral cavity PacBio Sequel Forsyth Institute 2415.0x 92.4 100 0 100 0.53 JAJAVM01 2479 2565 2565 23 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037577915.1 HMT-202 KCOM1260 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1260 2 2651378 26.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/577/915/GCA_037577915.1_ASM3757791v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 851 SAMN22215925 ASM3757791v1 Contig Microbial assembly v. 1 2021-10-11T18:25:04.430 not available oral cavity PacBio Sequel Forsyth Institute 1507.0x 92.31 100 0 100 0.8 JAJAVN01 2528 2617 2617 27 15 46 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037578015.1 HMT-420 SB017 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB017 3 3001854 26.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/578/015/GCA_037578015.1_ASM3757801v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 851 SAMN22215921 ASM3757801v1 Contig Microbial assembly v. 1 2021-10-11T18:25:04.370 not available resected colorectal tumor PacBio Sequel Forsyth Institute 840.0x 91.74 100 0 100 0.99 JAJAVK01 2832 2916 2916 21 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037578025.1 HMT-420 SB067 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB067 4 2476946 27.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/578/025/GCA_037578025.1_ASM3757802v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 851 SAMN22215920 ASM3757802v1 Contig Microbial assembly v. 1 2021-10-11T18:25:04.353 not available resected colorectal tumor PacBio Sequel Forsyth Institute 580.0x 91.73 100 0 99.99 0.48 JAJAVJ01 2418 2496 2496 16 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037888955.1 HMT-420 SB018 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB018 1 2209938 27.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/888/955/GCA_037888955.1_ASM3788895v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN15202577 ASM3788895v1 Complete Genome Microbial Assembly v. 1 2020-06-10T16:59:09.453 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 206.0x 96.87 100 0.57 100 0 GCF_037888955.1 2072 2155 2155 21 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037888965.1 HMT-202 SB016 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum SB016 1 2442222 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/888/965/GCA_037888965.1_ASM3788896v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN15202576 ASM3788896v1 Complete Genome Microbial Assembly v. 1 2020-06-10T16:59:09.436 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 217.0x 96.87 100 0.56 100 0.3 GCF_037888965.1 2297 2382 2382 22 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037888975.1 HMT-420 SB014 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB014 1 2365912 27.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/888/975/GCA_037888975.1_ASM3788897v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN15202574 ASM3788897v1 Complete Genome HGAP v. 4 2020-06-10T16:59:09.400 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 528.0x 96.65 100 0 99.99 3.26 GCF_037888975.1 2152 2235 2235 20 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037888985.1 HMT-202 SB013 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum SB013 3 2527742 26.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/888/985/GCA_037888985.1_ASM3788898v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN15202573 ASM3788898v1 Complete Genome Microbial Assembly v. 1 2020-06-10T16:59:09.383 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 314.0x 97.4 90.26 0 98.33 0.46 GCF_037888985.1 2444 2520 2520 23 11 41 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037888995.1 HMT-420 SB012 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB012 4 2495286 26.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/888/995/GCA_037888995.1_ASM3788899v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN15202572 ASM3788899v1 Complete Genome Flye assembler v. 2.7 2020-06-10T16:59:09.370 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 785.0x 96.76 98.88 0 100 0.06 GCF_037888995.1 2453 2534 2534 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037889005.1 HMT-698 SB011 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto SB011 1 2238677 27.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/005/GCA_037889005.1_ASM3788900v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 76856 SAMN15202571 ASM3788900v1 Complete Genome HGAP v. 4 2020-06-10T16:59:09.353 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 637.0x 98.86 100 0 100 0.1 GCF_037889005.1 2085 2165 2165 17 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037889015.1 HMT-420 SB010 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB010 2 2278067 27.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/015/GCA_037889015.1_ASM3788901v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN15202570 ASM3788901v1 Complete Genome Microbial Assembly v. 1 2020-06-10T16:59:09.336 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 525.0x 96.87 100 0 100 0.09 GCF_037889015.1 2119 2202 2202 21 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037889025.1 HMT-202 SB005 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum SB005 1 2391569 27.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/025/GCA_037889025.1_ASM3788902v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN15202567 ASM3788902v1 Complete Genome Flye assembler v. 2.7 2020-06-10T16:59:09.290 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 727.0x 97.16 98.88 0 99.98 1.11 GCF_037889025.1 2331 2417 2417 23 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037889035.1 HMT-420 SB003 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB003 1 2286272 26.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/035/GCA_037889035.1_ASM3788903v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN15202566 ASM3788903v1 Complete Genome HGAP v. 4 2020-06-10T16:59:09.273 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 198.0x 96.7 98.86 0 100 0.03 GCF_037889035.1 2163 2245 2245 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037889045.1 HMT-420 SB001 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB001 1 2424816 27.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/045/GCA_037889045.1_ASM3788904v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN15202564 ASM3788904v1 Complete Genome Flye assembler v. 2.7 2020-06-10T16:59:09.233 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 776.0x 96.5 98.86 0 99.98 0.06 GCF_037889045.1 2350 2432 2432 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037889055.1 HMT-698 SB049 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto SB049 1 2307630 27.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/055/GCA_037889055.1_ASM3788905v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN19765496 ASM3788905v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.783 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 343.0x 98.82 100 0 100 0.3 GCF_037889055.1 2159 2240 2240 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037889065.1 HMT-464 SB048 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 SB048 1 2141381 27.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/065/GCA_037889065.1_ASM3788906v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19765495 ASM3788906v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.773 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 370.0x 92.16 100 0 100 0.15 GCF_037889065.1 2018 2097 2097 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889095.1 HMT-464 SB032 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 SB032 1 2160860 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/095/GCA_037889095.1_ASM3788909v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19765479 ASM3788909v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.580 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 447.0x 92.21 100 0 99.99 0.8 GCF_037889095.1 2012 2090 2090 15 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889105.1 HMT-464 SB030 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 SB030 1 1909786 27.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/105/GCA_037889105.1_ASM3788910v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19765477 ASM3788910v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.553 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1216.0x 92.13 100 0 99.97 0.14 GCF_037889105.1 1781 1859 1859 15 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889115.1 HMT-464 KCOM3764 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3764 1 2211312 27.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/115/GCA_037889115.1_ASM3788911v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767291 ASM3788911v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.730 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 511.0x 92.16 100 0 100 0.36 GCF_037889115.1 2086 2164 2164 15 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889125.1 HMT-698 KCOM3756 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM3756 1 2268467 27.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/125/GCA_037889125.1_ASM3788912v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN19767290 ASM3788912v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.720 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 314.0x 98.88 100 0 100 0.16 GCF_037889125.1 2143 2224 2224 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037889135.1 HMT-464 KCOM3714 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3714 1 2104048 27.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/135/GCA_037889135.1_ASM3788913v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767289 ASM3788913v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.707 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1360.0x 92.19 100 0 99.98 0.43 GCF_037889135.1 1972 2051 2051 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889145.1 HMT-464 KCOM3685 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3685 1 2052412 27.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/145/GCA_037889145.1_ASM3788914v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767288 ASM3788914v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.697 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1498.0x 92.12 100 0 100 0.33 GCF_037889145.1 1847 1925 1925 15 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889155.1 HMT-464 KCOM3503 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3503 1 2147387 26.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/155/GCA_037889155.1_ASM3788915v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767287 ASM3788915v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.683 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 375.0x 92.15 100 0 100 0.81 GCF_037889155.1 1980 2058 2058 15 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889165.1 HMT-464 KCOM3457 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3457 1 2060938 27.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/165/GCA_037889165.1_ASM3788916v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767286 ASM3788916v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.673 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 527.0x 92.23 100 0 99.99 0.21 GCF_037889165.1 1839 1918 1918 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889175.1 HMT-698 KCOM3321 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM3321 1 2372993 27.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/175/GCA_037889175.1_ASM3788917v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN19767283 ASM3788917v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.640 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 321.0x 98.92 100 0 99.98 0.27 GCF_037889175.1 2252 2333 2333 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037889185.1 HMT-464 KCOM3208 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3208 1 2107853 27.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/185/GCA_037889185.1_ASM3788918v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767282 ASM3788918v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.627 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 596.0x 92.14 100 0 100 0.6 GCF_037889185.1 1970 2048 2048 15 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889195.1 HMT-464 KCOM3205 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3205 1 2148184 27.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/195/GCA_037889195.1_ASM3788919v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767281 ASM3788919v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.613 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 678.0x 92.16 100 0 99.98 0.37 GCF_037889195.1 2040 2118 2118 15 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889205.1 HMT-464 KCOM3164 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3164 1 2142942 26.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/205/GCA_037889205.1_ASM3788920v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767280 ASM3788920v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.597 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 516.0x 92.19 100 0 100 0.45 GCF_037889205.1 1946 2025 2025 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889215.1 HMT-464 KCOM3154 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3154 1 2065444 27.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/215/GCA_037889215.1_ASM3788921v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767279 ASM3788921v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.587 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 720.0x 92.21 100 0 100 0.46 GCF_037889215.1 1911 1990 1990 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889225.1 HMT-464 KCOM2907 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM2907 1 2080509 27.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/225/GCA_037889225.1_ASM3788922v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767276 ASM3788922v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.550 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1001.0x 92.25 100 0 99.98 0.17 GCF_037889225.1 1883 1962 1962 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889235.1 HMT-698 KCOM2902 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM2902 1 2316559 27.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/235/GCA_037889235.1_ASM3788923v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN19767275 ASM3788923v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.540 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1056.0x 98.91 100 0 100 0.22 GCF_037889235.1 2151 2232 2232 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037889245.1 HMT-464 KCOM2898 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM2898 1 2108315 26.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/245/GCA_037889245.1_ASM3788924v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767274 ASM3788924v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.530 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 537.0x 92.25 100 0 100 0.71 GCF_037889245.1 1903 1982 1982 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889255.1 HMT-698 KCOM2878 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM2878 1 2131437 27.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/255/GCA_037889255.1_ASM3788925v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_K PRJNA549513 851 SAMN19767273 ASM3788925v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.517 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 273.0x 95.32 100 1.12 100 0.03 GCF_037889255.1 2009 2093 2093 20 15 48 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037889265.1 HMT-464 KCOM2847 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM2847 1 2037865 27.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/265/GCA_037889265.1_ASM3788926v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767272 ASM3788926v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.503 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 523.0x 92.12 100 0.56 99.99 0.11 GCF_037889265.1 1891 1967 1967 14 15 46 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889275.1 HMT-420 KCOM2373 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM2373 2 2539073 27.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/275/GCA_037889275.1_ASM3788927v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 851 SAMN19767269 ASM3788927v1 Complete Genome Flye v. 2.7 2021-06-17T19:04:53.470 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 231.0x 91.77 100 0 100 0.54 GCF_037889275.1 2460 2538 2538 15 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037889285.1 HMT-698 KCOM1276 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM1276 1 2465284 27.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/285/GCA_037889285.1_ASM3788928v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN19767266 ASM3788928v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.437 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 541.0x 98.92 100 0.56 99.99 0.25 GCF_037889285.1 2382 2463 2463 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037889315.1 HMT-698 KCOM3486 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM3486 1 2132317 27.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/315/GCA_037889315.1_ASM3788931v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_K PRJNA549513 851 SAMN21582347 ASM3788931v1 Complete Genome MA v. 1 2021-09-23T18:46:05.173 not available Cervico-facial PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 245.0x 95.4 100 0 100 0.19 GCF_037889315.1 1973 2055 2055 19 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037889325.1 HMT-698 KCOM1801 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM1801 1 2328800 27.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/325/GCA_037889325.1_ASM3788932v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN21582344 ASM3788932v1 Complete Genome MA v. 1 2021-09-23T18:46:05.133 not available Cervico-facial PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 421.0x 98.73 100 0 100 0.2 GCF_037889325.1 2151 2231 2231 17 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037889335.1 HMT-464 KCOM3412 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3412 2 2052086 27.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/335/GCA_037889335.1_ASM3788933v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN21582341 ASM3788933v1 Complete Genome MA v. 1 2021-09-23T18:46:05.090 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 791.0x 92.15 100 0 99.99 0.12 GCF_037889335.1 1901 1980 1980 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889345.1 HMT-464 KCOM3182 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3182 1 2038899 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/345/GCA_037889345.1_ASM3788934v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN21582340 ASM3788934v1 Complete Genome MA v. 1 2021-09-23T18:46:05.060 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 613.0x 92.13 100 0 100 0.29 GCF_037889345.1 1894 1973 1973 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889365.1 HMT-464 KCOM3758 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3758 1 2089824 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/365/GCA_037889365.1_ASM3788936v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN21582334 ASM3788936v1 Complete Genome MA v. 1 2021-09-23T18:46:04.970 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 309.0x 92.2 100 0 99.95 0.29 GCF_037889365.1 1894 1972 1972 15 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037889375.1 HMT-698 KCOM3739 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM3739 1 2326553 27.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/375/GCA_037889375.1_ASM3788937v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN21582333 ASM3788937v1 Complete Genome MA v. 1 2021-09-23T18:46:04.957 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 364.0x 98.79 100 0 100 0.28 GCF_037889375.1 2128 2208 2208 17 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037889385.1 HMT-698 KCOM3713 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM3713 1 2155951 27.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/889/385/GCA_037889385.1_ASM3788938v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_K PRJNA549513 851 SAMN21582332 ASM3788938v1 Complete Genome MA v. 1 2021-09-23T18:46:04.943 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 466.0x 95.36 100 0 100 0.03 GCF_037889385.1 2026 2107 2107 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037890135.1 HMT-698 KCOM2312 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM2312 1 2081548 27.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/890/135/GCA_037890135.1_ASM3789013v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_K PRJNA549513 851 SAMN21582308 ASM3789013v1 Complete Genome MA v. 1 2021-09-23T18:46:04.590 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 363.0x 95.38 100 1.12 100 0.12 GCF_037890135.1 1914 1998 1998 20 15 48 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037893335.1 HMT-420 SB020 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB020 1 2504786 26.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/893/335/GCA_037893335.1_ASM3789333v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN15202579 ASM3789333v1 Complete Genome Flye assembler v. 2.7 2020-06-10T16:59:09.486 not available Adjacent normal colon PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 603.0x 96.67 100 0 100 0.49 GCF_037893335.1 2456 2537 2537 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037893545.1 HMT-200 SB015 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii SB015 1 2202499 27.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/893/545/GCA_037893545.1_ASM3789354v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA549513 155615 SAMN15202575 ASM3789354v1 Complete Genome Microbial Assembly v. 1 2020-06-10T16:59:09.420 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 690.0x 97.56 100 0 99.96 0.4 GCF_037893545.1 2120 2202 2202 19 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_037893695.1 HMT-202 SB009 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum SB009 1 2447092 27.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/893/695/GCA_037893695.1_ASM3789369v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN15202569 ASM3789369v1 Complete Genome Flye assembler v. 2.7 2020-06-10T16:59:09.320 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 940.0x 97.26 98.88 0 99.72 0.16 GCF_037893695.1 2430 2517 2517 23 15 48 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037893865.1 HMT-202 SB040 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum SB040 1 2334368 27.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/893/865/GCA_037893865.1_ASM3789386v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19765487 ASM3789386v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.680 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 124.0x 97.33 100 0 100 0.09 GCF_037893865.1 2189 2277 2277 25 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037895375.1 HMT-200 SB037 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii SB037 1 2134802 27.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/895/375/GCA_037895375.1_ASM3789537v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA549513 155615 SAMN19765484 ASM3789537v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.643 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 839.0x 97.57 100 0 99.99 0.06 GCF_037895375.1 1973 2057 2057 21 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_037896705.1 HMT-420 SB035 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB035 2 2274778 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/896/705/GCA_037896705.1_ASM3789670v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 851 SAMN19765482 ASM3789670v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.617 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 830.0x 91.74 100 0 100 0.03 2117 2200 2200 21 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037897415.1 HMT-420 SB034 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB034 1 2588861 26.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/415/GCA_037897415.1_ASM3789741v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19765481 ASM3789741v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.606 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 228.0x 96.7 100 0 99.98 0.1 GCF_037897415.1 2425 2506 2506 20 14 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037897425.1 HMT-420 SB031 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB031 1 2432266 27.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/425/GCA_037897425.1_ASM3789742v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19765478 ASM3789742v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.570 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 677.0x 96.86 100 0 100 0.28 GCF_037897425.1 2268 2350 2350 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037897485.1 HMT-420 SB029 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB029 3 2439165 27.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/485/GCA_037897485.1_ASM3789748v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19765476 ASM3789748v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.543 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 560.0x 96.97 100 0 100 0.71 GCF_037897485.1 2372 2453 2453 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037897495.1 HMT-202 SB028 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum SB028 1 2470512 26.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/495/GCA_037897495.1_ASM3789749v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19765475 ASM3789749v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.530 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 606.0x 96.99 100 0 100 0.11 GCF_037897495.1 2300 2387 2387 24 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037897505.1 HMT-420 SB027 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB027 1 2188068 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/505/GCA_037897505.1_ASM3789750v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19765474 ASM3789750v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.516 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 540.0x 96.76 100 0 100 0.17 GCF_037897505.1 2019 2101 2101 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037897515.1 HMT-420 SB026 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB026 1 2438255 27.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/515/GCA_037897515.1_ASM3789751v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19765473 ASM3789751v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.500 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 789.0x 96.68 100 0.57 100 0.16 GCF_037897515.1 2254 2338 2338 22 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037897535.1 HMT-420 SB025 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB025 1 2222684 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/535/GCA_037897535.1_ASM3789753v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19765472 ASM3789753v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.486 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 816.0x 96.76 100 0 100 0.2 GCF_037897535.1 2062 2147 2147 23 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037897545.1 HMT-420 SB024 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB024 3 2778608 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/545/GCA_037897545.1_ASM3789754v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19765471 ASM3789754v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.470 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 526.0x 97.17 100 0.73 100 0.17 GCF_037897545.1 2639 2719 2719 19 15 45 1 Fusobacterium_animalis_homd_HMT_420 GCA_037897555.1 HMT-202 KCOM1281 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1281 2 2492106 26.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/555/GCA_037897555.1_ASM3789755v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19767301 ASM3789755v1 Complete Genome Flye v. 2.7 2021-06-17T19:04:53.843 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 409.0x 96.97 100 0 100 0.97 GCF_037897555.1 2337 2427 2427 27 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037897565.1 HMT-202 KCOM1278 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1278 1 2568135 26.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/565/GCA_037897565.1_ASM3789756v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19767300 ASM3789756v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.833 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 268.0x 96.19 100 1.12 100 0.28 GCF_037897565.1 2407 2496 2496 26 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037897635.1 HMT-202 KCOM1275 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1275 1 2521395 26.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/635/GCA_037897635.1_ASM3789763v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19767299 ASM3789763v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.823 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 339.0x 97.09 100 0 99.99 0.39 GCF_037897635.1 2404 2495 2495 28 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037897925.1 HMT-202 KCOM1272 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1272 3 2626081 26.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/897/925/GCA_037897925.1_ASM3789792v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19767298 ASM3789792v1 Complete Genome Flye v. 2.7 2021-06-17T19:04:53.810 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 225.0x 96.92 100 0 100 0.51 GCF_037897925.1 2494 2583 2583 26 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037898185.1 HMT-202 KCOM1271 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1271 1 2752062 26.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/898/185/GCA_037898185.1_ASM3789818v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19767297 ASM3789818v1 Complete Genome Flye v. 2.7 2021-06-17T19:04:53.800 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 182.0x 96.17 100 0 99.99 0.56 GCF_037898185.1 2705 2793 2793 24 15 48 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037899555.1 HMT-202 KCOM1250 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1250 2 2547090 26.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/899/555/GCA_037899555.1_ASM3789955v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 851 SAMN19767263 ASM3789955v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.403 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1304.0x 92.38 100 1.12 99.99 0.23 2441 2529 2529 25 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037899945.1 HMT-200 KCOM1231 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii KCOM1231 1 2044556 27.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/899/945/GCA_037899945.1_ASM3789994v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA549513 851 SAMN21582337 ASM3789994v1 Complete Genome MA v. 1 2021-09-23T18:46:05.010 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 855.0x 92.63 100 0 99.99 0.03 1873 1956 1956 20 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_037900345.1 HMT-698 ATCC 25586 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto ATCC 25586 1 2180116 27.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/900/345/GCA_037900345.1_ASM3790034v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 190304 SAMN21582564 ASM3790034v1 Complete Genome MA v. 1 2021-09-23T19:16:07.520 not available Cervico-facial PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 312.0x 99.99 100 0 100 0.09 GCF_037900345.1 2016 2097 2097 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037900625.1 HMT-202 ATCC 10953 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum ATCC 10953 3 2474009 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/900/625/GCA_037900625.1_ASM3790062v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 393480 SAMN21582562 ASM3790062v1 Complete Genome MA v. 1 2021-09-23T19:16:07.490 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 362.0x 99.99 100 0 100 0.12 GCF_037900625.1 2351 2442 2442 24 19 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037904225.1 HMT-420 SB019 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB019 1 2194667 27.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/904/225/GCA_037904225.1_ASM3790422v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 155615 SAMN15202578 ASM3790422v1 Complete Genome Microbial Assembly v. 2 2020-06-10T16:59:09.470 not available Colorectal adenocarcinoma PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1121.0x 93.11 100 1.12 100 0.04 2065 2143 2143 16 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037904495.1 HMT-202 KCOM1257 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1257 1 2501678 26.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/904/495/GCA_037904495.1_ASM3790449v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19767296 ASM3790449v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.790 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 462.0x 96.11 100 0 100 0.19 GCF_037904495.1 2368 2454 2454 23 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037904575.1 HMT-420 KCOM3774 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM3774 1 2579120 27.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/904/575/GCA_037904575.1_ASM3790457v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19767292 ASM3790457v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.743 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 617.0x 97.1 98.86 0 100 0.48 GCF_037904575.1 2412 2493 2493 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037904585.1 HMT-200 KCOM3370 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii KCOM3370 1 2149566 27.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/904/585/GCA_037904585.1_ASM3790458v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA549513 155615 SAMN19767285 ASM3790458v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.660 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1144.0x 97.45 100 0 100 0.03 GCF_037904585.1 1953 2037 2037 21 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_037904595.1 HMT-420 KCOM3367 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM3367 1 2311668 27.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/904/595/GCA_037904595.1_ASM3790459v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19767284 ASM3790459v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.650 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 849.0x 96.85 100 1.14 100 0.3 GCF_037904595.1 2168 2247 2247 17 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037904605.1 HMT-202 KCOM3036 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM3036 3 2818639 26.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/904/605/GCA_037904605.1_ASM3790460v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19767278 ASM3790460v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.573 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1790.0x 96.2 100 0 100 0.45 GCF_037904605.1 2752 2840 2840 25 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037904615.1 HMT-200 KCOM2988 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii KCOM2988 1 2128951 27.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/904/615/GCA_037904615.1_ASM3790461v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA549513 155615 SAMN19767277 ASM3790461v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.563 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 888.0x 97.61 100 1.12 100 0.03 GCF_037904615.1 1959 2042 2042 20 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_037904725.1 HMT-420 KCOM2763 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM2763 1 2322909 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/904/725/GCA_037904725.1_ASM3790472v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19767271 ASM3790472v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.493 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 453.0x 96.8 100 0 100 0.07 GCF_037904725.1 2159 2240 2240 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037904935.1 HMT-202 KCOM2500 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM2500 1 2500475 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/904/935/GCA_037904935.1_ASM3790493v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19767270 ASM3790493v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.480 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1387.0x 96.21 100 0 100 0.08 GCF_037904935.1 2402 2488 2488 23 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037905245.1 HMT-420 KCOM1280 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM1280 2 2668481 26.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/905/245/GCA_037905245.1_ASM3790524v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN19767267 ASM3790524v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.446 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 374.0x 96.68 100 0 99.99 0.26 GCF_037905245.1 2503 2589 2589 23 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037905975.1 HMT-202 KCOM1274 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1274 1 2526091 26.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/905/975/GCA_037905975.1_ASM3790597v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19767265 ASM3790597v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.426 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1051.0x 97.08 100 0 100 0.73 GCF_037905975.1 2399 2486 2486 24 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037906325.1 HMT-202 KCOM1267 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1267 2 2602652 27.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/906/325/GCA_037906325.1_ASM3790632v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN19767264 ASM3790632v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.413 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1203.0x 96.5 100 0 100 0.44 GCF_037906325.1 2560 2651 2651 26 15 49 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037906355.1 HMT-420 SB008 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB008 1 2341829 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/906/355/GCA_037906355.1_ASM3790635v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582177 ASM3790635v1 Complete Genome MA v. 1 2021-09-23T17:27:09.976 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 703.0x 96.88 100 1.28 100 2.02 GCF_037906355.1 2171 2250 2250 17 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037906365.1 HMT-202 SB004 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum SB004 1 2391664 27.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/906/365/GCA_037906365.1_ASM3790636v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN21582176 ASM3790636v1 Complete Genome MA v. 1 2021-09-23T17:27:09.963 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1218.0x 97.16 100 0 100 0.1 GCF_037906365.1 2289 2375 2375 23 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037906395.1 HMT-420 SB063 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB063 1 2187441 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/906/395/GCA_037906395.1_ASM3790639v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582178 ASM3790639v1 Complete Genome MA v. 1 2021-09-23T17:27:09.990 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 245.0x 96.72 100 0 100 0.13 GCF_037906395.1 2021 2103 2103 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037906465.1 HMT-420 SB059 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB059 1 2588850 26.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/906/465/GCA_037906465.1_ASM3790646v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582169 ASM3790646v1 Complete Genome MA v. 1 2021-09-23T17:27:09.850 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 786.0x 96.7 100 0 99.99 0.19 GCF_037906465.1 2358 2440 2440 21 14 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037907055.1 HMT-420 SB062 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB062 1 2291394 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/907/055/GCA_037907055.1_ASM3790705v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582172 ASM3790705v1 Complete Genome MA v. 1 2021-09-23T17:27:09.906 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 196.0x 96.82 100 0 100 0.24 GCF_037907055.1 2175 2255 2255 17 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037908355.1 HMT-420 SB061 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB061 1 2292958 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/908/355/GCA_037908355.1_ASM3790835v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582171 ASM3790835v1 Complete Genome MA v. 1 2021-09-23T17:27:09.883 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 431.0x 96.82 100 0 100 0.24 GCF_037908355.1 2174 2254 2254 17 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037909675.1 HMT-420 SB060 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB060 1 2142132 27.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/909/675/GCA_037909675.1_ASM3790967v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582170 ASM3790967v1 Complete Genome MA v. 1 2021-09-23T17:27:09.870 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 542.0x 96.83 100 0 100 0.04 GCF_037909675.1 1975 2057 2057 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911025.1 HMT-420 SB058 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB058 1 2489800 26.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/025/GCA_037911025.1_ASM3791102v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582168 ASM3791102v1 Complete Genome MA v. 1 2021-09-23T17:27:09.836 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 216.0x 96.65 100 0 99.99 0.36 GCF_037911025.1 2283 2365 2365 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911815.1 HMT-420 SB056 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB056 1 2134784 27.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/815/GCA_037911815.1_ASM3791181v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582167 ASM3791181v1 Complete Genome MA v. 1 2021-09-23T17:27:09.816 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 533.0x 96.83 100 0 100 0.05 GCF_037911815.1 1953 2032 2032 17 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911825.1 HMT-200 SB055 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii SB055 3 2145498 27.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/825/GCA_037911825.1_ASM3791182v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA549513 155615 SAMN21582166 ASM3791182v1 Complete Genome Flye v. 2 2021-09-23T17:27:09.800 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 359.0x 97.54 100 0 100 0.04 GCF_037911825.1 1970 2052 2052 19 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_037911835.1 HMT-200 SB054 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii SB054 1 2161381 27.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/835/GCA_037911835.1_ASM3791183v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA549513 155615 SAMN21582165 ASM3791183v1 Complete Genome Flye v. 2 2021-09-23T17:27:09.786 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 183.0x 97.73 100 0 99.98 0.02 GCF_037911835.1 2012 2091 2091 18 15 45 1 Fusobacterium_vincentii_homd_HMT_200 GCA_037911845.1 HMT-420 SB053 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB053 1 2427097 27.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/845/GCA_037911845.1_ASM3791184v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582164 ASM3791184v1 Complete Genome MA v. 1 2021-09-23T17:27:09.773 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 551.0x 96.64 100 0 100 0.41 GCF_037911845.1 2227 2308 2308 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911855.1 HMT-420 SB052 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB052 1 2328368 27.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/855/GCA_037911855.1_ASM3791185v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582163 ASM3791185v1 Complete Genome MA v. 1 2021-09-23T17:27:09.753 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 298.0x 96.59 100 0 100 0.08 GCF_037911855.1 2142 2222 2222 18 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911865.1 HMT-200 KCOM2931 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii KCOM2931 1 2087702 27.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/865/GCA_037911865.1_ASM3791186v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJNA549513 155615 SAMN21582339 ASM3791186v1 Complete Genome MA v. 1 2021-09-23T18:46:05.043 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 389.0x 97.48 100 0 99.99 0.16 GCF_037911865.1 1941 2023 2023 19 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_037911875.1 HMT-420 KCOM3645 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM3645 1 2413802 26.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/875/GCA_037911875.1_ASM3791187v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582330 ASM3791187v1 Complete Genome MA v. 1 2021-09-23T18:46:04.913 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 254.0x 96.81 100 0 100 0.38 GCF_037911875.1 2282 2364 2364 19 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911885.1 HMT-420 KCOM3229 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM3229 1 2460084 26.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/885/GCA_037911885.1_ASM3791188v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582326 ASM3791188v1 Complete Genome MA v. 1 2021-09-23T18:46:04.843 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 303.0x 96.78 100 0.16 99.95 0.04 GCF_037911885.1 2261 2346 2346 22 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911895.1 HMT-202 KCOM3210 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM3210 1 2431418 26.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/895/GCA_037911895.1_ASM3791189v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN21582325 ASM3791189v1 Complete Genome MA v. 1 2021-09-23T18:46:04.826 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 235.0x 96.98 100 0 100 0.36 GCF_037911895.1 2300 2386 2386 23 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037911905.1 HMT-420 KCOM3127 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM3127 1 2776034 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/905/GCA_037911905.1_ASM3791190v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582323 ASM3791190v1 Complete Genome MA v. 1 2021-09-23T18:46:04.786 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 249.0x 97.13 100 0.57 100 0.14 GCF_037911905.1 2625 2706 2706 18 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911915.1 HMT-420 KCOM2969 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM2969 1 2658899 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/915/GCA_037911915.1_ASM3791191v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582321 ASM3791191v1 Complete Genome MA v. 1 2021-09-23T18:46:04.760 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 393.0x 97.13 100 1.14 100 0.2 GCF_037911915.1 2485 2563 2563 18 15 44 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911925.1 HMT-420 KCOM2952 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM2952 2 2306212 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/925/GCA_037911925.1_ASM3791192v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582320 ASM3791192v1 Complete Genome MA v. 1 2021-09-23T18:46:04.746 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 221.0x 96.88 100 0 100 0.2 GCF_037911925.1 2119 2204 2204 21 15 48 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911935.1 HMT-420 KCOM2877 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM2877 1 2762399 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/935/GCA_037911935.1_ASM3791193v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582316 ASM3791193v1 Complete Genome MA v. 1 2021-09-23T18:46:04.690 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 256.0x 97.11 100 0 100 0.1 GCF_037911935.1 2552 2634 2634 20 14 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911945.1 HMT-420 KCOM2860 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM2860 1 2223019 27.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/945/GCA_037911945.1_ASM3791194v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582315 ASM3791194v1 Complete Genome MA v. 1 2021-09-23T18:46:04.680 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 263.0x 96.73 100 0 100 0.03 GCF_037911945.1 2059 2140 2140 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911955.1 HMT-420 KCOM2765 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM2765 1 2430285 27.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/955/GCA_037911955.1_ASM3791195v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582314 ASM3791195v1 Complete Genome MA v. 1 2021-09-23T18:46:04.666 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 256.0x 96.73 100 0.57 100 0.03 GCF_037911955.1 2324 2408 2408 19 15 49 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911965.1 HMT-202 KCOM2594 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM2594 1 2678339 26.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/965/GCA_037911965.1_ASM3791196v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN21582313 ASM3791196v1 Complete Genome MA v. 1 2021-09-23T18:46:04.653 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 397.0x 96.45 100 0 99.99 0.26 GCF_037911965.1 2623 2711 2711 25 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037911975.1 HMT-420 KCOM2538 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM2538 1 2336223 27.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/975/GCA_037911975.1_ASM3791197v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582312 ASM3791197v1 Complete Genome MA v. 1 2021-09-23T18:46:04.640 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 349.0x 96.73 100 0 100 0.08 GCF_037911975.1 2185 2266 2266 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037911985.1 HMT-202 KCOM2517 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM2517 2 2577327 27.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/911/985/GCA_037911985.1_ASM3791198v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN21582311 ASM3791198v1 Complete Genome MA v. 1 2021-09-23T18:46:04.626 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 287.0x 96.28 100 0 99.99 0.11 GCF_037911985.1 2462 2553 2553 27 15 48 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037912005.1 HMT-202 KCOM2446 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM2446 1 2504356 26.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/912/005/GCA_037912005.1_ASM3791200v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN21582309 ASM3791200v1 Complete Genome MA v. 1 2021-09-23T18:46:04.603 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 364.0x 97.04 100 0 99.99 0.5 GCF_037912005.1 2407 2494 2494 24 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037912015.1 HMT-202 KCOM1330 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum KCOM1330 4 2584315 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/912/015/GCA_037912015.1_ASM3791201v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJNA549513 76857 SAMN21582307 ASM3791201v1 Complete Genome MA v. 1 2021-09-23T18:46:04.576 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 527.0x 96.2 100 0 100 0.21 GCF_037912015.1 2537 2626 2626 24 15 49 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_037912025.1 HMT-420 KCOM1325 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM1325 1 2315884 27.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/912/025/GCA_037912025.1_ASM3791202v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN21582306 ASM3791202v1 Complete Genome MA v. 1 2021-09-23T18:46:04.560 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 314.0x 96.91 100 0 100 0.49 GCF_037912025.1 2190 2272 2272 19 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_037912275.1 HMT-420 KCOM1279 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis KCOM1279 1 2560460 26.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/912/275/GCA_037912275.1_ASM3791227v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJNA549513 76859 SAMN22215927 ASM3791227v1 Complete Genome Microbial assembly v. 1 2021-10-11T18:25:04.456 not available oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 755.0x 96.89 100 0 99.97 0.17 GCF_037912275.1 2393 2477 2477 22 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_037951365.1 HMT-698 KCOM2995 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM2995 1 2211334 27.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/951/365/GCA_037951365.1_ASM3795136v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN21582322 ASM3795136v1 Complete Genome MA v. 1 2021-09-23T18:46:04.773 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 365.0x 98.92 100 0 100 0.09 GCF_037951365.1 2072 2152 2152 17 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037952305.1 HMT-698 KCOM2939 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM2939 1 2254946 27.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/952/305/GCA_037952305.1_ASM3795230v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN21582319 ASM3795230v1 Complete Genome MA v. 1 2021-09-23T18:46:04.733 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 267.0x 98.91 100 0 100 0.08 GCF_037952305.1 2109 2190 2190 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037953125.1 HMT-698 KCOM2883 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM2883 1 2188825 27.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/953/125/GCA_037953125.1_ASM3795312v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN21582318 ASM3795312v1 Complete Genome MA v. 1 2021-09-23T18:46:04.720 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 462.0x 98.91 100 0 100 0.62 GCF_037953125.1 2028 2109 2109 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037953935.1 HMT-464 KCOM2013 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM2013 1 2055381 27.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/953/935/GCA_037953935.1_ASM3795393v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN19767268 ASM3795393v1 Complete Genome Microbial assembly v. 1 2021-06-17T19:04:53.460 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 358.0x 92.13 100 0.56 99.99 0.09 GCF_037953935.1 1906 1984 1984 15 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037954595.1 HMT-464 KCOM2205 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM2205 1 2075339 27.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/954/595/GCA_037954595.1_ASM3795459v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN21582338 ASM3795459v1 Complete Genome MA v. 1 2021-09-23T18:46:05.027 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 488.0x 92.15 100 0 99.99 0.3 GCF_037954595.1 1893 1972 1972 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037954885.1 HMT-464 KCOM3674 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3674 1 2100970 27.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/954/885/GCA_037954885.1_ASM3795488v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN21582331 ASM3795488v1 Complete Genome MA v. 1 2021-09-23T18:46:04.930 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 546.0x 92.25 98.88 0 100 0.72 GCF_037954885.1 1912 1991 1991 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037955165.1 HMT-464 KCOM3363 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3363 1 2146718 26.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/955/165/GCA_037955165.1_ASM3795516v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN21582329 ASM3795516v1 Complete Genome MA v. 1 2021-09-23T18:46:04.900 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 255.0x 92.23 100 0 100 0.69 GCF_037955165.1 1951 2030 2030 16 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_037955445.1 HMT-698 KCOM3240 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto KCOM3240 1 2200008 27.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/955/445/GCA_037955445.1_ASM3795544v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJNA549513 851 SAMN21582327 ASM3795544v1 Complete Genome MA v. 1 2021-09-23T18:46:04.870 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 292.0x 98.92 100 0 100 0.07 GCF_037955445.1 2059 2140 2140 18 15 47 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_037975335.1 HMT-464 KCOM3187 Named Cultivated Oral (Abundance: No Data) HMT-464 Fusobacterium sp. HMT-464 KCOM3187 1 2188487 26.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/975/335/GCA_037975335.1_ASM3797533v1 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_J PRJNA549513 851 SAMN21582324 ASM3797533v1 Complete Genome MA v. 1 2021-09-23T18:46:04.807 not available Oral cavity PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 298.0x 92.24 100 0 100 0.35 GCF_037975335.1 2016 2096 2096 17 15 47 1 Fusobacterium_watanabei_homd_HMT_464 GCA_045159905.1 HMT-420 SB033 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB033 1 2397821 27.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/045/159/905/GCA_045159905.1_ASM4515990v1 not found PRJNA549513 76859 SAMN19765480 ASM4515990v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.593 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 431.0x 96.77 GCF_045159905.1 2257 2339 2339 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_045159915.1 HMT-420 SB036 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB036 1 2588871 26.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/045/159/915/GCA_045159915.1_ASM4515991v1 not found PRJNA549513 76859 SAMN19765483 ASM4515991v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.630 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 343.0x 96.69 GCF_045159915.1 2358 2440 2440 21 14 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_045159925.1 HMT-200 SB038 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii SB038 1 2096563 27.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/045/159/925/GCA_045159925.1_ASM4515992v1 not found PRJNA549513 155615 SAMN19765485 ASM4515992v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.653 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 483.0x 97.55 GCF_045159925.1 1957 2039 2039 19 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_045159935.1 HMT-420 SB041 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB041 1 2239416 27.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/045/159/935/GCA_045159935.1_ASM4515993v1 not found PRJNA549513 76859 SAMN19765488 ASM4515993v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.690 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 1162.0x 96.81 GCF_045159935.1 2101 2179 2179 16 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_045159945.1 HMT-420 SB043 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB043 1 2558877 26.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/045/159/945/GCA_045159945.1_ASM4515994v1 not found PRJNA549513 76859 SAMN19765490 ASM4515994v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.716 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 387.0x 96.44 GCF_045159945.1 2378 2463 2463 22 15 47 1 Fusobacterium_animalis_homd_HMT_420 GCA_045159955.1 HMT-420 SB045 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB045 2 2394557 26.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/045/159/955/GCA_045159955.1_ASM4515995v1 not found PRJNA549513 76859 SAMN19765492 ASM4515995v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.740 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 428.0x 96.84 GCF_045159955.1 2277 2359 2359 20 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_045159965.1 HMT-200 SB046 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii SB046 1 2102167 27.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/045/159/965/GCA_045159965.1_ASM4515996v1 not found PRJNA549513 155615 SAMN19765493 ASM4515996v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.750 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 371.0x 97.45 GCF_045159965.1 1924 2006 2006 19 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_045159985.1 HMT-420 SB050 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis SB050 1 2341805 27.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/045/159/985/GCA_045159985.1_ASM4515998v1 not found PRJNA549513 76859 SAMN19765497 ASM4515998v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.796 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 332.0x 96.88 GCF_045159985.1 2175 2254 2254 17 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_045159995.1 HMT-202 SB051 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum SB051 3 2499187 27.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/045/159/995/GCA_045159995.1_ASM4515999v1 not found PRJNA549513 76857 SAMN19765498 ASM4515999v1 Complete Genome Microbial assembly v. 1 2021-06-17T17:35:03.806 not available resected colorectal tumor PacBio Sequel Vaccine and Infectious Disease, Fred Hutchinson Cancer Research 529.0x 97.11 GCF_045159995.1 2412 2500 2500 25 15 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_900006675.1 HMT-127 J31 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis J31 5 2324167 31.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/006/675/GCA_900006675.1_J31_HGAP2 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJEB10568 1290 SAMEA3515759 J31_HGAP2 Contig 2017-02-21T15:24:57.140 UNIVERSITY OF LIVERPOOL 200.0x 99.38 99.1 0.27 100 0.24 GCF_900006675.1 FBVO01 2231 2380 2380 55 23 70 1 Staphylococcus_hominis_homd_HMT_127 GCA_900009115.1 HMT-343 AX_NCIMB_11015_WG Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-343 Achromobacter xylosoxidans AX_NCIMB_11015_WG 1 6501194 67.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/009/115/GCA_900009115.1_BN2877 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter;s__Achromobacter xylosoxidans PRJEB11308 85698 SAMEA3610973 BN2877 Complete Genome 2019-11-17T08:11:10.920 UNIVERSITY OF LIVERPOOL 10.0x 98.67 99.53 0.47 100 0.38 GCF_900009115.1 5866 5969 5969 23 10 69 1 Achromobacter_xylosoxidans_homd_HMT_343 GCA_900033555.1 HMT-127 2842STDY5753564 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis 2842STDY5753564 20 2207040 31.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/033/555/GCA_900033555.1_12754_1_95 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJEB4909 1290 SAMEA2383020 12754_1#95 Scaffold 2014-07-17T08:09:28.120 Netherlands blood SC 100.0x 99.22 99.38 0.57 99.97 0.07 GCF_900033555.1 FDPE01 2145 2270 2270 54 8 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_900065875.1 HMT-705 SN19 Named Cultivated Oral (Abundance: Low) HMT-705 Hoylesella oralis SN19 12 2922118 44.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/065/875/GCA_900065875.1_PRJEB126981 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella phocaeensis PRJEB12698 1776388 SAMEA3869493 PRJEB126981 Scaffold 2016-02-11T12:05:55.126 URMITE 84.0x 99.29 0.36 99.38 0 GCF_900065875.1 FIZG01 2415 2525 2525 52 7 50 1 Hoylesella_oralis_homd_HMT_705 GCA_900068995.1 HMT-116 CR07 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis CR07 26 2474601 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/068/995/GCA_900068995.1_CR07 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJEB8890 29388 SAMEA3661573 CR07 Contig 2015-11-13T11:05:25.720 France genomic DNA Department of Biosecurity PCL3 31.0x 98.95 99.81 0.36 99.99 0.09 GCF_900068995.1 CZWH01 2348 2459 2459 45 4 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_900079085.1 HMT-633 CHUV0807 Named Cultivated Oral (Abundance: High) HMT-633 Cardiobacterium hominis CHUV0807 88 2646022 59.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/079/085/GCA_900079085.1_c_hominis_CHUV0807 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium hominis PRJEB13157 2718 SAMEA3920025 c_hominis_CHUV0807 Contig 2016-07-26T11:05:20.950 Switzerland Blood cultures CHUV-UNIL 306.0x 96.66 98.41 0 93.46 0.09 GCF_900079085.1 FKLO01 2431 2494 2494 13 3 46 1 Cardiobacterium_hominis_homd_HMT_633 GCA_900086555.1 HMT-092 NCTC13585 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-092 Neisseria weaveri NCTC13585 1 2188497 49.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/086/555/GCA_900086555.1_34903_D01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria weaveri PRJEB6403 28091 SAMEA3174300 34903_D01 Complete Genome 2015-04-09T08:08:24.050 SC 364.0x 98.94 100 0.43 100 0.01 GCF_900086555.1 1986 2068 2068 13 12 55 2 Neisseria_weaveri_homd_HMT_092 GCA_900086615.2 HMT-601 BPH0662 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis BPH0662 4 2854742 31.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/086/615/GCA_900086615.2_BPH0662 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJEB13975 1282 SAMEA3982825 BPH0662 Complete Genome 2016-05-12T12:05:17.836 UNIVERSITY OF MELBOURNE 76.0x 99.53 99.81 0 100 1.58 GCF_900086615.2 2708 2867 2867 82 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_900087685.2 HMT-621 WHO_Y Named Cultivated Pathogen (Abundance: Scarce) HMT-621 Neisseria gonorrhoeae WHO_Y 2 2233133 52.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/087/685/GCA_900087685.2_WHOY d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria gonorrhoeae PRJEB14020 485 SAMEA2448469 WHOY Complete Genome 2016-06-10T09:05:09.533 WTSI 186.0x 99.37 99.71 0.35 99.99 0.11 GCF_900087685.2 2243 2332 2332 20 12 56 1 Neisseria_gonorrhoeae_homd_HMT_621 GCA_900095495.1 HMT-968 V975 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-968 Bacteroides ovatus V975 1 6475296 41.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/095/495/GCA_900095495.1_B_ovatus_V975 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus PRJEB4366 1379690 SAMEA4392618 B_ovatus_V975 Complete Genome 2016-10-07T08:06:04.510 ifr 23.0x 99.99 99 0.12 99.9 0.67 GCF_900095495.1 4991 5095 5095 21 15 67 1 Bacteroides_ovatus_homd_HMT_968 GCA_900095705.1 HMT-248 Marseille-P2749 Unnamed Cultivated Oral (Abundance: High) HMT-248 Fusobacterium sp. HMT-248 Marseille-P2749 6 1809170 27.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/095/705/GCA_900095705.1_PRJEB15286 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium massiliense PRJEB15286 1852365 SAMEA4413213 PRJEB15286 Scaffold 2016-09-29T09:37:10.096 URMITE 210.0x 98.88 1.12 99.99 0.28 GCF_900095705.1 FMJA01 1649 1722 1722 15 8 48 2 Fusobacterium_sp_HMT_248_homd_HMT_248 GCA_900095835.1 HMT-413 Marseille-P2826 Unnamed Cultivated Oral (Abundance: Medium) HMT-413 Alloprevotella sp. HMT-413 Marseille-P2826 6 2771606 47.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/095/835/GCA_900095835.1_PRJEB15302 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella massiliensis PRJEB15302 1852368 SAMEA4415111 PRJEB15302 Scaffold 2016-09-29T09:38:01.130 URMITE 120.0x 97.3 1.49 96.04 1.07 GCF_900095835.1 FMIU01 2188 2286 2286 7 22 68 1 Alloprevotella_sp_HMT_413_homd_HMT_413 GCA_900095855.1 HMT-123 Marseille-P2911 Named NVP** Uncultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-123 Anaeroglobus massiliensis Marseille-P2911 2 1715864 50.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/095/855/GCA_900095855.1_PRJEB15308 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus massiliensis PRJEB15308 1852379 SAMEA4415313 PRJEB15308 Contig 2016-09-29T09:38:04.080 URMITE 148.0x 99.4 0 89.94 0.1 GCF_900095855.1 FMIY01 1609 1743 1743 74 9 50 1 Anaeroglobus_massiliensis_homd_HMT_123 GCA_900096715.1 HMT-613 UB22 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia UB22 98 3272368 47.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/096/715/GCA_900096715.1_TFUB22 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJEB15383 28112 SAMEA4441424 TFUB22 Scaffold 2016-10-01T12:07:54.233 USA sub-gingival plaque UNIVERSITY OF SHEFFIELD 160.0x 98.67 98.91 0 99.95 0.03 GCF_900096715.1 FMML01 2725 2795 2795 20 5 44 1 Tannerella_forsythia_homd_HMT_613 GCA_900096725.1 HMT-613 UB4 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia UB4 71 3233032 47.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/096/725/GCA_900096725.1_TFUB4 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJEB15383 28112 SAMEA4441422 TFUB4 Scaffold 2016-10-01T12:07:53.990 USA sub-gingival plaque UNIVERSITY OF SHEFFIELD 87.0x 98.72 98.91 0.38 99.95 0 GCF_900096725.1 FMMN01 2678 2751 2751 23 5 44 1 Tannerella_forsythia_homd_HMT_613 GCA_900096735.1 HMT-613 UB20 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia UB20 93 3252894 47.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/096/735/GCA_900096735.1_TFUB20 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJEB15383 28112 SAMEA4441423 TFUB20 Scaffold 2016-10-01T12:07:54.176 USA sub-gingival plaque UNIVERSITY OF SHEFFIELD 74.0x 98.72 98.91 0.38 99.95 0.03 GCF_900096735.1 FMMM01 2691 2771 2771 31 4 44 1 Tannerella_forsythia_homd_HMT_613 GCA_900099625.1 HMT-804 ATCC 19435 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-804 Lactococcus lactis ATCC 19435 51 2514221 35.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/099/625/GCA_900099625.1_IMG-taxon_2597490350_annotated_assembly d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis PRJEB15957 1358 SAMN02982984 IMG-taxon 2597490350 annotated Scaffold 2014-08-11T20:08:24.370 missing DOE - JOINT GENOME INSTITUTE 651.0x 99.98 99.62 0.38 100 0.54 GCF_900099625.1 FMTF01 2482 2582 2582 41 6 52 1 Lactococcus_lactis_homd_HMT_804 GCA_900099765.1 HMT-048 CGMCC 1.11012 Named NVP Uncultivated Environmental -Soil/Water (Abundance: Scarce) HMT-048 Paenibacillus typhae CGMCC 1.11012 92 6740451 51.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/099/765/GCA_900099765.1_IMG-taxon_2667527451_annotated_assembly d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus typhae PRJEB15952 1174501 SAMN05216192 IMG-taxon 2667527451 annotated Scaffold 2016-06-08T14:21:53.090 missing missing DOE - JOINT GENOME INSTITUTE 148.0x 99.8 1.08 100 0.01 GCF_900099765.1 FNDX01 5881 6104 6104 135 8 79 1 Paenibacillus_typhae_homd_HMT_048 GCA_900100745.1 HMT-047 BVI Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium BVI 23 2306230 61.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/100/745/GCA_900100745.1_CJ d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium PRJEB16021 38289 SAMEA4506857 CJ Contig 2016-10-20T08:17:21.240 Colombia CEBITEC 100.0x 95.45 100 0.68 99.45 0 GCF_900100745.1 FMTZ01 2013 2068 0 7 2 45 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_900102155.1 HMT-857 DSM 938 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-857 Rhodobacter capsulatus DSM 938 68 3864762 66.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/102/155/GCA_900102155.1_IMG-taxon_2597490355_annotated_assembly d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter;s__Rhodobacter capsulatus PRJEB15810 1061 SAMN04244550 IMG-taxon 2597490355 annotated Contig 2015-11-05T18:38:13.883 missing DOE - JOINT GENOME INSTITUTE 273.0x 98.4 98.33 0.66 100 0.67 GCF_900102155.1 FNAY01 3674 3756 3756 27 3 51 1 Rhodobacter_capsulatus_homd_HMT_857 GCA_900104195.1 HMT-422 DSM 15886 Named NVP Uncultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-422 Cloacibacterium normanense DSM 15886 43 2736266 33.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/104/195/GCA_900104195.1_IMG-taxon_2634166320_annotated_assembly d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Cloacibacterium;s__Cloacibacterium normanense PRJEB16271 237258 SAMN04489756 IMG-taxon 2634166320 annotated Scaffold 2016-02-12T06:25:03.000 missing DOE - JOINT GENOME INSTITUTE 588.0x 99.99 100 0.25 99.97 0.07 GCF_900104195.1 FNJE01 2498 2574 2574 30 6 39 1 Cloacibacterium_normanense_homd_HMT_422 GCA_900104395.1 HMT-690 ATCC 25286 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum ATCC 25286 87 2550375 34.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/104/395/GCA_900104395.1_IMG-taxon_2597490366_annotated_assembly d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJEB16277 859 SAMN02983009 IMG-taxon 2597490366 annotated Scaffold 2014-08-11T20:16:26.880 missing DOE - JOINT GENOME INSTITUTE 448.0x 97.5 100 0 100 0.71 GCF_900104395.1 FMXX01 2260 2328 2328 15 6 46 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_900104625.1 HMT-225 Marseille-P3007 Unnamed Cultivated Oral (Abundance: Medium) HMT-225 Leptotrichia sp. HMT-225 Marseille-P3007 5 2538645 29.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/104/625/GCA_900104625.1_PRJEB16350 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia massiliensis PRJEB16350 1852388 SAMEA4519251 PRJEB16350 Contig 2016-10-20T08:17:43.256 URMITE 193.0x 100 1.7 99.97 0.36 GCF_900104625.1 FNVZ01 2394 2462 2462 14 11 42 1 Leptotrichia_sp_HMT_225_homd_HMT_225 GCA_900104835.1 HMT-862 DSM 20219 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-862 Bifidobacterium longum DSM 20219 6 2449019 60.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/104/835/GCA_900104835.1_IMG-taxon_2634166334_annotated_assembly d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum PRJEB16393 216816 SAMN04489748 IMG-taxon 2634166334 annotated Contig 2016-02-12T05:35:03.000 missing DOE - JOINT GENOME INSTITUTE 522.0x 99.99 100 0.92 99.89 1.93 GCF_900104835.1 FNRW01 2005 2104 2104 13 8 77 1 Bifidobacterium_longum_homd_HMT_862 GCA_900105015.1 HMT-671 DSM 20733 Named Cultivated Oral (Abundance: Low) HMT-671 Schaalia meyeri DSM 20733 15 2026407 65.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/105/015/GCA_900105015.1_IMG-taxon_2634166153_annotated_assembly d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia meyeri PRJEB16398 52773 SAMN04489715 IMG-taxon 2634166153 annotated Contig 2016-02-12T01:46:03.000 missing DOE - JOINT GENOME INSTITUTE 790.0x 99.99 97.63 2.18 99.91 1.2 GCF_900105015.1 FNLK01 1748 1814 1814 7 10 48 1 Schaalia_meyeri_homd_HMT_671 GCA_900105405.1 HMT-829 DSM 4944 Named Cultivated Vaginal (Abundance: High) HMT-829 Gardnerella vaginalis DSM 4944 1 1684415 41.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/105/405/GCA_900105405.1_IMG-taxon_2630968301_annotated_assembly d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium vaginale PRJEB16365 2702 SAMN04488545 IMG-taxon 2630968301 annotated Chromosome 2016-02-11T19:40:03.000 missing DOE - JOINT GENOME INSTITUTE 1165.0x 99.99 99.55 0.91 99.99 0.9 GCF_900105405.1 1285 1352 1352 15 6 45 1 Gardnerella_vaginalis_homd_HMT_829 GCA_900105505.1 HMT-341 DSM 44184 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-341 Corynebacterium coyleae DSM 44184 2 2568936 61.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/105/505/GCA_900105505.1_IMG-taxon_2634166170_annotated_assembly d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium coyleae PRJEB16385 53374 SAMN04488531 IMG-taxon 2634166170 annotated Contig 2016-02-11T18:36:49.000 missing DOE - JOINT GENOME INSTITUTE 1084.0x 99.99 97.94 1.94 99.84 0.87 GCF_900105505.1 FNRU01 2403 2477 2477 9 12 52 1 Corynebacterium_coyleae_homd_HMT_341 GCA_900105745.1 HMT-588 DSM 20436 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-588 Bifidobacterium dentium DSM 20436 2 2668067 58.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/105/745/GCA_900105745.1_IMG-taxon_2634166294_annotated_assembly d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium PRJEB16375 1150423 SAMN05192536 IMG-taxon 2634166294 annotated Contig 2016-05-31T17:46:17.273 missing DOE - JOINT GENOME INSTITUTE 681.0x 99.99 100 2.12 99.99 3.24 GCF_900105745.1 FNSE01 2173 2248 2248 9 9 56 1 Bifidobacterium_dentium_homd_HMT_588 GCA_900105895.1 HMT-674 DSM 20586 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-674 Atopobium minutum DSM 20586 3 1779562 48.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/105/895/GCA_900105895.1_IMG-taxon_2634166360_annotated_assembly d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium;s__Atopobium minutum PRJEB16473 1381 SAMN04489746 IMG-taxon 2634166360 annotated Contig 2016-02-12T05:16:02.000 missing DOE - JOINT GENOME INSTITUTE 1100.0x 99.98 100 0 99.68 1.02 GCF_900105895.1 FNSH01 1657 1718 1718 9 6 45 1 Atopobium_minutum_homd_HMT_674 GCA_900106515.1 HMT-784 EL1 Named Cultivated Nasal (Abundance: High) HMT-784 Peptoniphilus lacydonensis EL1 3 1845182 29.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/106/515/GCA_900106515.1_PRJEB16530 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacydonensis PRJEB16530 1673725 SAMEA4521260 PRJEB16530 Contig 2016-10-21T11:05:24.913 URMITE 232.0x 98.95 0 99.98 0.6 GCF_900106515.1 FNWF01 1746 1819 1819 31 7 34 1 Peptoniphilus_lacydonensis_homd_HMT_784 GCA_900106575.1 HMT-325 DSM 11449 Named Cultivated Oral (Abundance: Medium) HMT-325 Capnocytophaga granulosa DSM 11449 44 2723453 41.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/106/575/GCA_900106575.1_IMG-taxon_2693429885_annotated_assembly d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga granulosa PRJEB16575 45242 SAMN05444420 IMG-taxon 2693429885 annotated Scaffold 2016-07-26T23:07:33.053 missing missing DOE - JOINT GENOME INSTITUTE 366.0x 99.99 100 0.5 99.61 0.13 GCF_900106575.1 FNND01 2452 2511 2511 10 3 45 1 Capnocytophaga_granulosa_homd_HMT_325 GCA_900109315.1 HMT-821 ATCC 33940 Named Cultivated Pathogen (Abundance: Scarce) HMT-821 Haemophilus ducreyi ATCC 33940 18 1576562 37.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/109/315/GCA_900109315.1_IMG-taxon_2597490374_annotated_assembly d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B;s__Haemophilus_B ducreyi PRJEB16819 730 SAMN02983000 IMG-taxon 2597490374 annotated Contig 2014-08-11T20:13:14.933 missing DOE - JOINT GENOME INSTITUTE 1183.0x 99.99 99.6 0 100 0.13 GCF_900109315.1 FOJC01 1544 1608 1608 17 8 38 1 Haemophilus_ducreyi_homd_HMT_821 GCA_900109865.1 HMT-127 NFPP34 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis NFPP34 34 2219443 31.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/109/865/GCA_900109865.1_IMG-taxon_2599185353_annotated_assembly d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJEB16878 1290 SAMN03159421 IMG-taxon 2599185353 annotated Contig 2014-11-03T06:47:01.697 missing DOE - JOINT GENOME INSTITUTE 528.0x 99.11 99.38 0.57 99.97 0.03 GCF_900109865.1 FOBP01 2152 2256 2256 62 4 37 1 Staphylococcus_hominis_homd_HMT_127 GCA_900110795.1 HMT-344 LMG 21974 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-344 Pseudomonas luteola LMG 21974 53 5421602 55.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/110/795/GCA_900110795.1_IMG-taxon_2663762783_annotated_assembly d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B;s__Pseudomonas_B luteola PRJEB16962 243924 SAMN05216409 IMG-taxon 2663762783 annotated Contig 2016-06-08T14:31:18.156 missing missing DOE - JOINT GENOME INSTITUTE 211.0x 80.2 99.62 1.07 100 0.9 GCF_900110795.1 FOEV01 5128 5248 5248 56 9 54 1 Pseudomonas_luteola_homd_HMT_344 GCA_900111835.1 HMT-834 DSM 17224 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-834 Pseudomonas otitidis DSM 17224 50 6344741 66.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/111/835/GCA_900111835.1_IMG-taxon_2663762781_annotated_assembly d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas;s__Metapseudomonas otitidis PRJEB17072 319939 SAMN05216263 IMG-taxon 2663762781 annotated Scaffold 2016-06-08T14:26:11.346 missing missing DOE - JOINT GENOME INSTITUTE 105.0x 99.59 0.76 100 0.1 GCF_900111835.1 FOJP01 5734 5885 5885 80 5 65 1 Pseudomonas_otitidis_homd_HMT_834 GCA_900111845.1 HMT-646 ATCC 23330 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae ATCC 23330 59 1953889 46.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/111/845/GCA_900111845.1_PRJEB17081 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB17081 887327 SAMEA4526462 PRJEB17081 Contig 2016-10-29T08:48:34.970 URMITE 179.0x 99.99 98.87 0.23 100 0.09 GCF_900111845.1 FOJK01 1962 2025 2025 11 3 48 1 Kingella_kingae_homd_HMT_646 GCA_900113545.1 HMT-598 ATCC 25295 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata ATCC 25295 23 2360727 53.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/113/545/GCA_900113545.1_IMG-taxon_2675903696_annotated_assembly d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJEB17337 214482 SAMN05421815 IMG-taxon 2675903696 annotated Scaffold 2016-07-20T20:53:55.380 missing missing DOE - JOINT GENOME INSTITUTE 628.0x 99.99 99.9 0.23 99.99 0.01 GCF_900113545.1 FOPS01 2209 2276 2276 12 3 51 1 Neisseria_elongata_homd_HMT_598 GCA_900115025.1 HMT-542 C Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius C 60 2116810 35.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/115/025/GCA_900115025.1_IMG-taxon_2593339272_annotated_assembly d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJEB17122 1261 SAMN05660467 IMG-taxon 2593339272 annotated Scaffold 2016-08-25T14:31:26.957 missing missing DOE - JOINT GENOME INSTITUTE 603.0x 99.98 100 0 99.96 0.68 GCF_900115025.1 FOVA01 1935 2054 2054 60 5 53 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_900115315.1 HMT-627 DSM 11385 Named Cultivated Oral (Abundance: Scarce) HMT-627 Capnocytophaga haemolytica DSM 11385 39 2655673 44.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/115/315/GCA_900115315.1_IMG-taxon_2693429878_annotated_assembly d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga haemolytica PRJEB17163 45243 SAMN05444369 IMG-taxon 2693429878 annotated Contig 2016-07-26T23:04:22.696 missing missing DOE - JOINT GENOME INSTITUTE 417.0x 99.99 100 1.43 99.94 1.43 GCF_900115315.1 FOVX01 2396 2445 2445 3 2 43 1 Capnocytophaga_haemolytica_homd_HMT_627 GCA_900116825.1 HMT-211 R-24608 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-211 Paenacidovorax caeni R-24608 115 4152335 65.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/116/825/GCA_900116825.1_IMG-taxon_2634166357_annotated_assembly d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenacidovorax;s__Paenacidovorax caeni PRJEB17605 343013 SAMN04489707 IMG-taxon 2634166357 annotated Contig 2016-02-12T01:41:04.000 missing DOE - JOINT GENOME INSTITUTE 259.0x 99.99 99.38 0.75 100 0.35 GCF_900116825.1 FPBX01 3786 3868 3868 25 5 51 1 Paenacidovorax_caeni_homd_HMT_211 GCA_900120125.1 HMT-928 Marseille-P3249 Named** Cultivated Oral (Abundance: Scarce) HMT-928 Gemella massiliensis Marseille-P3249 7 1804814 30.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/120/125/GCA_900120125.1_PRJEB18020 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella massiliensis PRJEB18020 1909670 SAMEA4555189 PRJEB18020 Scaffold 2016-11-26T12:10:17.543 URMITE 189.0x 98.28 0 99.99 0.08 GCF_900120125.1 FQLS01 1678 1753 1753 24 9 41 1 Gemella_massiliensis_homd_HMT_928 GCA_900120335.1 HMT-812 HE147/09 Named Cultivated Gastrointestinal Tract (Abundance: Low) HMT-812 Helicobacter pylori HE147/09 1 1667712 39.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/120/335/GCA_900120335.1_HE147_09 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori_BU PRJEB17945 210 SAMEA4554838 HE147_09 Complete Genome 2017-07-01T16:09:13.443 Institute of Medical Microbiology and Hospital Epidemiology 137.0x 94.13 99.57 0 99.99 0.01 GCF_900120335.1 1581 1633 1633 11 4 36 1 Helicobacter_pylori_homd_HMT_812 GCA_900120385.1 HMT-809 Marseille-P2936 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-809 Olsenella phocaeensis Marseille-P2936 37 2276769 66.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/120/385/GCA_900120385.1_PRJEB18030 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_I;s__Olsenella_I phocaeensis PRJEB18030 1852385 SAMEA4555318 PRJEB18030 Scaffold 2016-11-26T12:10:18.316 URMITE 254.0x 93.63 0.51 95.25 3.32 GCF_900120385.1 FPLI01 2153 2218 2218 10 3 52 0 Olsenella_phocaeensis_homd_HMT_809 GCA_900128465.1 HMT-404 Marseille-P2825 Unnamed Cultivated Oral (Abundance: No Data) HMT-404 Schaalia sp. HMT-404 Marseille-P2825 31 2300105 63.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/128/465/GCA_900128465.1_PRJEB18045 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia bouchesdurhonensis PRJEB18045 1852361 SAMEA4555840 PRJEB18045 Scaffold 2016-11-26T12:10:18.890 URMITE 120.0x 86.71 2.31 84.27 2.35 GCF_900128465.1 FQSA01 2111 2181 2181 11 7 51 1 Schaalia_sp_HMT_404_homd_HMT_404 GCA_900129435.1 HMT-705 DSM 20702 Named Cultivated Oral (Abundance: Low) HMT-705 Hoylesella oralis DSM 20702 17 2812609 44.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/129/435/GCA_900129435.1_IMG-taxon_2695421016_annotated_assembly d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella phocaeensis PRJEB18195 28134 SAMN05444288 IMG-taxon 2695421016 annotated Contig 2016-07-26T23:01:39.160 missing missing DOE - JOINT GENOME INSTITUTE 317.0x 99.99 99.29 0.36 99.1 0 GCF_900129435.1 FQVS01 2325 2397 2397 18 4 49 1 Hoylesella_oralis_homd_HMT_705 GCA_900129535.1 HMT-885 DSM 22613 Named Cultivated Oral (Abundance: Medium) HMT-885 Prevotella scopos DSM 22613 82 3209893 40.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/129/535/GCA_900129535.1_IMG-taxon_2695420955_annotated_assembly d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella scopos PRJEB18205 1236518 SAMN05444364 IMG-taxon 2695420955 annotated Scaffold 2016-07-26T23:04:14.986 United Kingdom missing DOE - JOINT GENOME INSTITUTE 305.0x 99.98 99.32 0.17 99.88 0.16 GCF_900129535.1 FQWA01 2544 2608 2608 14 3 46 1 Prevotella_scopos_homd_HMT_885 GCA_900141925.1 HMT-344 KACC 15471 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-344 Pseudomonas luteola KACC 15471 33 5339831 55.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/141/925/GCA_900141925.1_IMG-taxon_2663762797_annotated_assembly d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B;s__Pseudomonas_B luteola PRJEB18301 1076620 SAMN05216295 IMG-taxon 2663762797 annotated Scaffold 2016-06-08T14:27:01.360 missing missing DOE - JOINT GENOME INSTITUTE 202.0x 99.62 1.08 100 0.38 GCF_900141925.1 FQYS01 5023 5145 5145 57 8 56 1 Pseudomonas_luteola_homd_HMT_344 GCA_900143035.1 HMT-755 ATCC 7073 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius ATCC 7073 18 2162983 40.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/143/035/GCA_900143035.1_IMG-taxon_2687453658_annotated_assembly d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJEB18413 1304 SAMN05421814 IMG-taxon 2687453658 annotated Scaffold 2016-07-20T20:53:53.993 missing missing DOE - JOINT GENOME INSTITUTE 695.0x 99.96 99.46 0.15 99.99 0 GCF_900143035.1 FRCU01 1982 2052 2052 32 3 34 1 Streptococcus_salivarius_homd_HMT_755 GCA_900155925.1 HMT-374 3bp Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-374 Cellulosimicrobium funkei 3bp 14 4317712 74.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/155/925/GCA_900155925.1_IMG-taxon_2681812868_annotated_assembly d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium;s__Cellulosimicrobium funkei PRJEB18885 1612203 SAMN05518682 IMG-taxon 2681812868 annotated Contig 2016-08-06T01:21:39.536 missing missing DOE - JOINT GENOME INSTITUTE 199.0x 99.42 0.67 100 0.26 GCF_900155925.1 FTMI01 3776 3866 3866 26 3 60 1 Cellulosimicrobium_funkei_homd_HMT_374 GCA_900156035.1 HMT-030 DSM 44280 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-030 Corynebacterium afermentans DSM 44280 45 2326687 64.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/156/035/GCA_900156035.1_IMG-taxon_2681813557_annotated_assembly d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium afermentans PRJEB18848 38286 SAMN05421802 IMG-taxon 2681813557 annotated Contig 2016-07-20T20:53:34.353 missing missing DOE - JOINT GENOME INSTITUTE 373.0x 99.99 97.32 0 99.82 0.03 GCF_900156035.1 FTMH01 2144 2213 2213 8 5 55 1 Corynebacterium_afermentans_homd_HMT_030 GCA_900156665.1 HMT-033 DSM 44531 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-033 Corynebacterium appendicis DSM 44531 32 2248056 64.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/156/665/GCA_900156665.1_IMG-taxon_2681813517_annotated_assembly d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium appendicis PRJEB18828 1161099 SAMN05444817 IMG-taxon 2681813517 annotated Contig 2016-07-26T23:26:29.030 missing missing DOE - JOINT GENOME INSTITUTE 369.0x 99.99 99.34 0.54 100 1.45 GCF_900156665.1 FTOF01 2138 2207 2207 11 3 54 1 Corynebacterium_appendicis_homd_HMT_033 GCA_900157215.1 HMT-619 3_3 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 3_3 72 2312663 48.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/215/GCA_900157215.1_Strain_3-3 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505341 Strain 3-3 Scaffold 2017-01-20T08:05:23.230 USA Subgingival plaque Melbourne Dental School, University of Melbourne 100.0x 99.45 99.61 0 99.98 0.04 GCF_900157215.1 FUFB01 1934 2005 2005 20 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900157225.1 HMT-619 7BTORR Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 7BTORR 72 2248982 48.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/225/GCA_900157225.1_7BTORR d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505343 7BTORR Scaffold 2017-01-20T08:05:23.726 USA Subgingival plaque Melbourne Dental School, University of Melbourne 100.0x 98.43 99.92 0 99.95 0.01 GCF_900157225.1 FUFD01 1890 1954 1954 13 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900157235.1 HMT-619 SU60 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis SU60 53 2257351 48.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/235/GCA_900157235.1_YH522 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505351 YH522 Scaffold 2017-01-20T08:05:24.366 Japan not collected Melbourne Dental School, University of Melbourne 100.0x 98.46 99.76 0 99.99 0.03 GCF_900157235.1 FUFI01 1914 1978 1978 15 3 45 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900157245.1 HMT-619 15_9 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 15_9 68 2252483 48.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/245/GCA_900157245.1_15-9 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505346 15-9 Scaffold 2017-01-20T08:05:23.983 Romania Subgingival plaque, from a periodontal pocket at least 6mm deep Melbourne Dental School, University of Melbourne 100.0x 98.56 99.86 0 99.98 0.03 GCF_900157245.1 FUGF01 1895 1965 1965 18 4 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900157255.1 HMT-619 ATCC 49417 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis ATCC 49417 77 2424225 48.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/255/GCA_900157255.1_ATCC49417 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505348 ATCC49417 Scaffold 2017-01-20T08:05:24.140 Canada Periodontal pocket Melbourne Dental School, University of Melbourne 100.0x 98.63 98.8 0.08 99.97 0.08 GCF_900157255.1 FUFH01 2113 2183 2183 19 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900157265.1 HMT-619 A7A1_28 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis A7A1_28 22 2222676 48.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/265/GCA_900157265.1_A7A1-28 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505349 A7A1-28 Scaffold 2017-01-20T08:05:24.226 USA Subgingival plaque, from a 9mm deep periodontal pocket Melbourne Dental School, University of Melbourne 100.0x 98.39 99.92 0 99.98 0.02 GCF_900157265.1 FUFF01 1882 1953 1953 20 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900157275.1 HMT-619 84_3 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 84_3 50 2325183 48.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/275/GCA_900157275.1_84-3 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505347 84-3 Scaffold 2017-01-20T08:05:24.066 Sudan Subgingival plaque, from a periodontal pocket at least 6mm deep Melbourne Dental School, University of Melbourne 100.0x 98.45 99.29 0 99.98 0.05 GCF_900157275.1 FUFG01 1989 2051 2051 11 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900157285.1 HMT-619 13_1 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 13_1 68 2341110 48.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/285/GCA_900157285.1_13-1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505345 13-1 Scaffold 2017-01-20T08:05:23.893 Sudan Subgingival plaque, from a periodontal pocket at least 6mm deep Melbourne Dental School, University of Melbourne 100.0x 98.41 99.92 0 99.98 0.03 GCF_900157285.1 FUGG01 1990 2063 2063 23 3 46 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900157295.1 HMT-619 11A Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 11A 89 2304118 48.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/295/GCA_900157295.1_11A d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505344 11A Scaffold 2017-01-20T08:05:23.803 Romania Subgingival plaque, from a periodontal pocket at least 6mm deep Melbourne Dental School, University of Melbourne 100.0x 98.49 99.92 0 99.99 0.06 GCF_900157295.1 FUFE01 1937 2000 2000 12 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900157325.1 HMT-619 3A1 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis 3A1 56 2343280 48.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/325/GCA_900157325.1_3A1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505342 3A1 Contig 2017-01-20T08:05:23.646 Norway Subgingival plaque, from a periodontal pocket at least 6mm deep Melbourne Dental School, University of Melbourne 100.0x 98.42 99.92 0 100 0.12 GCF_900157325.1 FUFC01 2003 2071 2071 17 3 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900157345.1 HMT-619 AFR5B1 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis AFR5B1 88 2290524 48.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/345/GCA_900157345.1_AFR-5B1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB10280 837 SAMEA3505350 AFR-5B1 Scaffold 2017-01-20T08:05:24.300 Sudan Subgingival plaque, from a periodontal pocket at least 6mm deep Melbourne Dental School, University of Melbourne 100.0x 98.55 99.54 0 99.99 0.1 GCF_900157345.1 FUFJ01 1925 1987 1987 12 2 47 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_900167215.1 HMT-796 ATCC 43714 Named Cultivated Oral (Abundance: No Data) HMT-796 Peptoanaerobacter margaretiae ATCC 43714 41 2553999 32.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/167/215/GCA_900167215.1_IMG-taxon_2585428116_annotated_assembly d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter;s__Peptoanaerobacter yurii PRJEB19559 39498 SAMN02745115 IMG-taxon 2585428116 annotated Scaffold 2014-05-05T22:26:22.113 USA:Maryland, USA DOE - JOINT GENOME INSTITUTE 482.0x 99.3 0.7 98.08 0.16 GCF_900167215.1 FUZS01 2130 0 0 40 4 42 1 Peptoanaerobacter_margaretiae_homd_HMT_796 GCA_900167385.1 HMT-288 ATCC 43324 Named Cultivated Oral (Abundance: Medium) HMT-288 Segatella oulorum ATCC 43324 63 2840943 46.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/167/385/GCA_900167385.1_IMG-taxon_2585428083_annotated_assembly d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oulorum PRJEB19556 28136 SAMN02745202 IMG-taxon 2585428083 annotated Scaffold 2014-05-05T22:55:21.576 United Kingdom DOE - JOINT GENOME INSTITUTE 363.0x 99.94 98.58 0 99.68 0.1 GCF_900167385.1 FUXK01 2503 2565 2565 9 2 50 1 Segatella_oulorum_homd_HMT_288 GCA_900169325.1 HMT-582 GC77 Named Cultivated Oral (Abundance: Medium) HMT-582 Kingella denitrificans GC77 80 2030828 54.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/169/325/GCA_900169325.1_GC77_g1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_A;s__Kingella_A denitrificans PRJEB19887 502 SAMEA103894054 GC77 g1 Contig 2017-03-16T17:07:39.603 LSHTM 47.0x 96.22 98.13 0 99.88 0 GCF_900169325.1 FZRL01 2017 2078 2078 6 3 51 1 Kingella_denitrificans_homd_HMT_582 GCA_900176115.1 HMT-548 DSM 20463 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-548 Peptoniphilus asaccharolyticus DSM 20463 17 2232586 32.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/176/115/GCA_900176115.1_IMG-taxon_2503982046_annotated_assembly d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus;s__Peptoniphilus asaccharolyticus PRJEB20240 573058 SAMN00017477 IMG-taxon 2503982046 annotated Contig 2010-07-23T07:46:03.803 DOE - JOINT GENOME INSTITUTE 272.0x 99.98 98.95 0 100 1.65 GCF_900176115.1 FWWR01 2283 2344 2344 29 3 28 1 Peptoniphilus_asaccharolyticus_homd_HMT_548 GCA_900176385.1 HMT-339 CGMCC 1.12511 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-339 Janibacter indicus CGMCC 1.12511 29 3419539 71.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/176/385/GCA_900176385.1_IMG-taxon_2718217638_annotated_assembly d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter;s__Janibacter indicus PRJEB20331 857417 SAMN06296429 IMG-taxon 2718217638 annotated Scaffold 2017-02-03T21:31:07.813 missing missing DOE - JOINT GENOME INSTITUTE 260.0x 99.82 0.54 100 0.8 GCF_900176385.1 FWXN01 3298 3374 3374 22 3 50 1 Janibacter_indicus_homd_HMT_339 GCA_900176625.1 HMT-929 Marseille-P2986 Unnamed Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-929 Peptoniphilaceae [G3] bacterium HMT-929 Marseille-P2986 15 1873678 34.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/176/625/GCA_900176625.1_PRJEB20365 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria;s__Fenollaria massiliensis PRJEB20365 1852391 SAMEA103970041 PRJEB20365 Scaffold 2017-04-11T11:07:00.450 URMITE 181.0x 97.55 0 99.95 0.35 GCF_900176625.1 FWYJ01 1866 1955 1955 28 12 48 1 Fenollaria_massiliensis_homd_HMT_929 GCA_900177895.1 HMT-405 SW7208426 Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis SW7208426 12 2187398 45.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/177/895/GCA_900177895.1_PRJEB20479 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJEB20479 1522312 SAMEA103981412 PRJEB20479 Scaffold 2017-04-19T11:05:04.650 URMITE 192.0x 91.76 0.68 100 0.06 GCF_900177895.1 FXBH01 2225 2300 2300 14 7 53 1 Kingella_negevensis_homd_HMT_405 GCA_900182485.2 HMT-405 kingella_eburonensis Named Cultivated Oral (Abundance: Medium) HMT-405 Kingella negevensis kingella_eburonensis 108 2109050 45.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/182/485/GCA_900182485.2_keburonensis d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C;s__Kingella_C negevensis PRJEB20493 1522312 SAMEA104034067 keburonensis Contig 2017-08-22T08:10:39.940 CHUV-UNIL 350.0x 91.99 0.23 100 0.03 GCF_900182485.2 FXUV02 2112 2179 2179 11 3 52 1 Kingella_negevensis_homd_HMT_405 GCA_900186465.1 HMT-136 Marseille-P3560 Named NVP** Cultivated Oral (Abundance: Medium) HMT-136 Selenomonas felix Marseille-P3560 17 2403152 56.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/186/465/GCA_900186465.1_PRJEB21319 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda felix PRJEB21319 1944634 SAMEA104125947 PRJEB21319 Scaffold 2017-12-05T13:06:01.690 URMITE 259.0x 98.89 0.05 100 0.47 GCF_900186465.1 FYCJ01 2228 2311 2311 19 6 57 1 Selenomonas_felix_homd_HMT_136 GCA_900186865.1 HMT-663 NCTC10257 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-663 Stenotrophomonas maltophilia NCTC10257 1 5004261 66.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/186/865/GCA_900186865.1_49243_F02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas maltophilia PRJEB6403 40324 SAMEA4076705 49243_F02 Complete Genome 2016-11-26T12:08:13.793 Mouth SC 156.0x 99.9 100 0.34 100 0.02 GCF_900186865.1 4562 4698 4698 42 13 80 1 Stenotrophomonas_maltophilia_homd_HMT_663 GCA_900186885.1 HMT-161 NCTC11810 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula NCTC11810 1 2132142 38.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/186/885/GCA_900186885.1_48903_D01 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula PRJEB6403 29466 SAMEA4063028 48903_D01 Complete Genome 2016-11-03T11:15:59.570 Intestinal tract SC 387.0x 99.99 100 0 100 0.09 GCF_900186885.1 1863 1944 1944 20 12 48 1 Veillonella_parvula_homd_HMT_161 GCA_900186935.1 HMT-621 NCTC13799 Named Cultivated Pathogen (Abundance: Scarce) HMT-621 Neisseria gonorrhoeae NCTC13799 1 2172222 52.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/186/935/GCA_900186935.1_49677_G01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria gonorrhoeae PRJEB6403 485 SAMEA4076765 49677_G01 Complete Genome 2016-12-21T09:11:38.216 United Kingdom throat swab SC 172.0x 99.33 99.82 0.21 100 0.11 GCF_900186935.1 2160 2250 2250 20 12 57 1 Neisseria_gonorrhoeae_homd_HMT_621 GCA_900186975.1 HMT-114 NCTC11865 Named Cultivated Skin (Abundance: High) HMT-114 Cutibacterium granulosum NCTC11865 1 2175244 64.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/186/975/GCA_900186975.1_50569_F01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium granulosum PRJEB6403 33011 SAMEA4412665 50569_F01 Complete Genome 2017-01-25T12:05:50.430 SC 400.0x 99.99 98.79 0 99.75 0.33 GCF_900186975.1 1806 1883 1883 22 6 48 1 Cutibacterium_granulosum_homd_HMT_114 GCA_900186995.1 HMT-946 NCTC13334 Named Cultivated Oral (Abundance: Medium) HMT-946 Haemophilus pittmaniae NCTC13334 1 2181355 42.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/186/995/GCA_900186995.1_50465_A02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D pittmaniae PRJEB6403 249188 SAMEA4384241 50465_A02 Complete Genome 2017-01-19T14:06:50.956 Brazil blood SC 537.0x 99.92 99.58 0.36 100 0.34 GCF_900186995.1 1982 2062 0 0 20 59 1 Haemophilus_pittmaniae_homd_HMT_946 GCA_900187105.1 HMT-577 NCTC10596 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens NCTC10596 1 2192577 55.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/187/105/GCA_900187105.1_50618_F01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJEB6403 539 SAMEA4412678 50618_F01 Complete Genome 2017-01-25T12:05:51.190 Norway sputum SC 147.0x 99.99 96.26 0.56 99.99 0.16 GCF_900187105.1 2091 2167 2167 10 12 53 1 Eikenella_corrodens_homd_HMT_577 GCA_900187225.1 HMT-825 NCTC10357 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-825 Listeria monocytogenes NCTC10357 1 2864663 38.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/187/225/GCA_900187225.1_51881_G01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes PRJEB6403 1639 SAMEA44515918 51881_G01 Complete Genome 2017-04-14T12:07:28.196 SC 241.0x 99.99 99.45 0.27 100 0.52 GCF_900187225.1 2777 2991 2991 128 18 67 1 Listeria_monocytogenes_homd_HMT_825 GCA_900187235.1 HMT-853 NCTC12011 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-853 Corynebacterium urealyticum NCTC12011 1 2377532 64.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/187/235/GCA_900187235.1_52184_D01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium urealyticum PRJEB6403 43771 SAMEA4530651 52184_D01 Complete Genome 2017-04-26T14:12:36.626 SC 264.0x 99.99 100 0 99.99 0.29 GCF_900187235.1 2004 2074 2074 8 9 52 1 Corynebacterium_urealyticum_homd_HMT_853 GCA_900187255.1 HMT-627 NCTC12947 Named Cultivated Oral (Abundance: Scarce) HMT-627 Capnocytophaga haemolytica NCTC12947 1 2688499 44.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/187/255/GCA_900187255.1_51184_F02 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga haemolytica PRJEB6403 45243 SAMEA44541418 51184_F02 Complete Genome 2017-03-03T16:12:14.476 Supragingival dental plaque SC 129.0x 99.99 100 1.43 99.93 1.43 GCF_900187255.1 2415 2476 2476 3 8 49 1 Capnocytophaga_haemolytica_homd_HMT_627 GCA_900187995.1 HMT-313 DSM 26989 Named Cultivated Oral (Abundance: High) HMT-313 Prevotella jejuni DSM 26989 92 3646938 41.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/187/995/GCA_900187995.1_IMG-taxon_2724679806_annotated_assembly d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella jejuni PRJEB21399 1177574 SAMN06265364 IMG-taxon 2724679806 annotated Scaffold 2017-01-25T05:48:52.653 missing missing DOE - JOINT GENOME INSTITUTE 286.0x 99.32 0 99.99 0.04 GCF_900187995.1 FZNZ01 2898 2955 2955 8 2 46 1 Prevotella_jejuni_homd_HMT_313 GCA_900215245.1 HMT-612 ATCC 13525 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-612 Pseudomonas fluorescens ATCC 13525 1 6511547 59.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/215/245/GCA_900215245.1_IMG-taxon_2617270901_annotated_assembly d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E fluorescens PRJEB22404 294 SAMN04488487 IMG-taxon 2617270901 annotated Chromosome 2016-02-11T18:31:03.000 missing DOE - JOINT GENOME INSTITUTE 37.0x 99.99 99.86 0.52 100 0.02 GCF_900215245.1 5879 6077 6077 109 19 69 1 Pseudomonas_fluorescens_homd_HMT_612 GCA_900232945.1 HMT-375 Marseille-P3926 Named** Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-375 Urinicoccus timonensis Marseille-P3926 13 1978908 41.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/232/945/GCA_900232945.1_PRJEB22715 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Urinicoccus;s__Urinicoccus timonensis PRJEB22715 2024205 SAMEA104351714 PRJEB22715 Contig 2017-10-18T08:06:29.413 stool URMITE 40.0x 99.3 0.7 98.57 0.61 GCF_900232945.1 OCTU01 1858 1954 1954 40 8 47 1 Urinicoccus_timonensis_homd_HMT_375 GCA_900240155.1 HMT-127 Staphylococcus hominis J11 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis Staphylococcus hominis J11 1 2236788 31.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/240/155/GCA_900240155.1_J11 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJEB22856 1290 SAMEA104410607 J11 Chromosome 2018-04-01T08:06:49.773 UNIVERSITY OF LIVERPOOL 1036.0x 99.36 99.1 0.12 100 0.13 GCF_900240155.1 2195 2305 2305 54 3 52 1 Staphylococcus_hominis_homd_HMT_127 GCA_900240185.1 HMT-127 Staphylococcus hominis J6 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis Staphylococcus hominis J6 1 2235839 31.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/240/185/GCA_900240185.1_J6 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJEB22856 1290 SAMEA104410608 J6 Chromosome 2018-04-01T08:06:49.800 UNIVERSITY OF LIVERPOOL 883.0x 99.36 99.1 0.02 100 0.13 GCF_900240185.1 2196 2304 2304 54 3 50 1 Staphylococcus_hominis_homd_HMT_127 GCA_900240195.1 HMT-120 Staphylococcus haemolyticus K8 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus Staphylococcus haemolyticus K8 1 2426012 32.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/240/195/GCA_900240195.1_haemolyticus d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJEB22856 1283 SAMEA104410614 haemolyticus Chromosome 2018-04-01T08:06:49.926 UNIVERSITY OF LIVERPOOL 195.0x 99.17 99.62 0.23 99.94 0.11 GCF_900240195.1 2382 2509 2509 67 3 56 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_900240305.1 HMT-894 Marseille-P4747 Unnamed Cultivated Oral (Abundance: Medium) HMT-894 Ottowia sp. HMT-894 Marseille-P4747 19 2830551 63.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/240/305/GCA_900240305.1_PRJEB23089 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ottowia;s__Ottowia massiliensis PRJEB23089 2045302 SAMEA104415770 PRJEB23089 Scaffold 2017-12-06T15:06:16.400 stool URMITE 34.0x 99.02 0.47 99.99 0.11 GCF_900240305.1 OEQA01 2446 2513 2513 11 6 49 1 Ottowia_sp_HMT_894_homd_HMT_894 GCA_900289035.1 HMT-815 M2 CSUR P5920 Named Cultivated Oral (Abundance: Scarce) HMT-815 Methanobrevibacter oralis M2 CSUR P5920 106 2124480 27.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/289/035/GCA_900289035.1_PRJEB24872 d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanocatella;s__Methanocatella oralis PRJEB24872 66851 SAMEA104570764 PRJEB24872 Scaffold 2018-02-09T08:13:01.596 Human colostrum URMITE 15.0x 99.98 100 0 99.76 0.53 GCF_900289035.1 OKQL01 1974 2009 2009 3 2 30 0 Methanobrevibacter_oralis_homd_HMT_815 GCA_900323545.1 HMT-403 Marseille-P3109 Unnamed Cultivated Oral (Abundance: No Data) HMT-403 Actinomyces sp. HMT-403 Marseille-P3109 8 3149233 68.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/323/545/GCA_900323545.1_PRJEB18270 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp900323545 PRJEB18270 2083009 SAMEA104717236 PRJEB18270 Contig 2018-03-24T12:05:10.876 sputum URMITE 189.0x 100 0 99.98 0.26 GCF_900323545.1 OOHN01 2571 2650 2650 15 9 54 1 Actinomyces_sp_HMT_403_homd_HMT_403 GCA_900324215.1 HMT-550 3_LA_115 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 3_LA_115 1 2891669 33.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/324/215/GCA_900324215.1_3_LA_115 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJEB25220 1280 SAMEA104710487 3_LA_115 Complete Genome 2018-07-20T09:05:51.563 Germany human University Hospital Munster 81.0x 97.73 99.51 0.08 100 0.45 GCF_900324215.1 2692 2884 2884 111 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_900324315.1 HMT-550 12_LA_293 Named Cultivated Nasal (Abundance: High) HMT-550 Staphylococcus aureus 12_LA_293 1 2910878 32.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/324/315/GCA_900324315.1_12_LA_293 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus PRJEB25220 1280 SAMEA104710496 12_LA_293 Complete Genome 2018-07-20T09:05:52.030 Germany human University Hospital Munster 87.0x 97.74 99.51 0.08 100 0.31 GCF_900324315.1 2744 2941 2941 116 19 61 1 Staphylococcus_aureus_homd_HMT_550 GCA_900332045.1 HMT-241 CD 337 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-241 Brochothrix thermosphacta CD 337 1 2594377 36.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/332/045/GCA_900332045.1_Brochothrix_thermosphacta_CD_337 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta PRJEB25018 2756 SAMEA104710648 Brochothrix thermosphacta CD 3 Complete Genome 2018-07-03T16:42:16.320 France shrimp INRA - Oniris 526.0x 99.19 99.45 0 99.9 0.27 GCF_900332045.1 2440 2604 2604 50 28 85 1 Brochothrix_thermosphacta_homd_HMT_241 GCA_900343115.1 HMT-791 Marseille-P4323 Named Cultivated Skin (Abundance: Medium) HMT-791 Cutibacterium namnetense Marseille-P4323 41 2373264 60.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/343/115/GCA_900343115.1_PRJEB25661 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium namnetense PRJEB25661 1574624 SAMEA4587991 PRJEB25661 Contig 2018-04-17T08:05:57.330 skin URMITE 11.0x 99.49 99.67 0.22 99.97 0.13 GCF_900343115.1 OPYJ01 2220 2294 2294 21 3 49 1 Cutibacterium_namnetense_homd_HMT_791 GCA_900407385.1 HMT-535 PTHi-10983 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius PTHi-10983 44 1826166 37.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/407/385/GCA_900407385.1_PTHi-10983 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB26586 727 SAMEA4643468 PTHi-10983 Contig 2018-07-03T16:46:41.446 Portugal CSF NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE 37.0x 97.43 99.62 0.04 100 0.52 GCF_900407385.1 UETX01 1731 1826 1826 33 10 51 1 Haemophilus_aegyptius_homd_HMT_535 GCA_900444855.1 HMT-297 NCTC10308 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-297 Acinetobacter johnsonii NCTC10308 6 3655558 41.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/444/855/GCA_900444855.1_46338_D01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter johnsonii PRJEB6403 40214 SAMEA3936795 46338_D01 Contig 2016-07-20T09:10:43.140 Duodenum SC 100.0x 99.99 100 0.27 100 0.12 GCF_900444855.1 UFRV01 3578 3732 3732 41 21 91 1 Acinetobacter_johnsonii_homd_HMT_297 GCA_900444865.1 HMT-282 NCTC12153 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-282 Acinetobacter junii NCTC12153 4 3344648 38.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/444/865/GCA_900444865.1_57566_G02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter junii PRJEB6403 40215 SAMEA104210755 57566_G02 Contig 2018-01-10T08:06:10.200 urine SC 100.0x 99.99 100 0.27 100 0.07 GCF_900444865.1 UFRL01 3151 3274 3274 20 24 78 1 Acinetobacter_junii_homd_HMT_282 GCA_900444875.1 HMT-282 NCTC10307 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-282 Acinetobacter junii NCTC10307 2 3361057 38.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/444/875/GCA_900444875.1_46338_C01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter junii PRJEB6403 40215 SAMEA3936794 46338_C01 Contig 2016-07-20T09:10:43.053 urine SC 100.0x 99.99 100 0.55 100 0.1 GCF_900444875.1 UFRZ01 3168 3280 3280 20 18 73 1 Acinetobacter_junii_homd_HMT_282 GCA_900445025.1 HMT-701 NCTC 9935 Named Cultivated Oral (Abundance: High) HMT-701 Schaalia odontolytica NCTC 9935 26 2454426 64.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/025/GCA_900445025.1_51670_G01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia odontolytica PRJEB6403 1660 SAMEA4504037 51670_G01 Contig 2017-03-30T12:18:18.960 Dental caries SC 100.0x 99.99 99.76 0.95 99.98 0.13 GCF_900445025.1 UAPR01 2063 2131 2131 8 8 51 1 Schaalia_odontolytica_homd_HMT_701 GCA_900445095.1 HMT-312 NCTC8251 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-312 Aerococcus viridans NCTC8251 3 2265362 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/095/GCA_900445095.1_48290_F02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;s__Aerococcus viridans PRJEB6403 1377 SAMEA4040026 48290_F02 Contig 2016-10-06T12:12:42.183 Air of an occupied school room SC 100.0x 99.99 98.9 4.73 99.95 1.99 GCF_900445095.1 UFSK01 2085 2219 2219 37 24 71 2 Aerococcus_viridans_homd_HMT_312 GCA_900445105.1 HMT-312 NCTC7595 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-312 Aerococcus viridans NCTC7595 51 2315448 40.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/105/GCA_900445105.1_58706_E02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;s__Aerococcus viridans PRJEB6403 1377 SAMEA104338366 58706_E02 Contig 2018-02-28T08:07:11.116 United Kingdom: London Air sample SC 100.0x 97.59 98.9 3.75 99.74 3.07 GCF_900445105.1 UAPS01 2114 2237 2237 44 21 57 1 Aerococcus_viridans_homd_HMT_312 GCA_900445165.1 HMT-531 NCTC9709 Named Cultivated Oral (Abundance: Scarce) HMT-531 Aggregatibacter actinomycetemcomitans NCTC9709 3 2089682 44.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/165/GCA_900445165.1_55433_A01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans PRJEB6403 714 SAMEA104062577 55433_A01 Contig 2017-09-30T08:08:53.266 Denmark: Copenhagen Abscess SC 100.0x 99.89 99.89 0.45 100 0 GCF_900445165.1 UFSG01 1959 2106 2106 56 27 63 1 Aggregatibacter_actinomycetemcomitans_homd_HMT_531 GCA_900445195.1 HMT-545 NCTC5908 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus NCTC5908 6 2332869 42.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/195/GCA_900445195.1_52313_B01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJEB6403 732 SAMEA4552887 52313_B01 Contig 2017-05-05T08:08:07.746 United Kingdom: London not available: to be reported later SC 100.0x 99.92 97.04 0.44 93.22 3.27 GCF_900445195.1 UFSP01 2659 2802 2802 58 25 59 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_900445205.1 HMT-831 NCTC13840 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-831 Alloiococcus otitis NCTC13840 4 1875153 44.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/205/GCA_900445205.1_52223_B01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alloiococcus;s__Alloiococcus otitis PRJEB6403 1652 SAMEA4535746 52223_B01 Contig 2017-05-05T08:08:06.926 Ear fluid SC 100.0x 99.99 97.28 1.09 97 0.75 GCF_900445205.1 UFSN01 1732 1860 1860 59 14 54 1 Alloiococcus_otitis_homd_HMT_831 GCA_900445265.1 HMT-017 NCTC9810 Named Cultivated Skin (Abundance: High) HMT-017 Anaerococcus octavius NCTC9810 2 1914290 30.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/265/GCA_900445265.1_51765_E01 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus octavius PRJEB6403 54007 SAMEA4521463 51765_E01 Contig 2017-04-06T14:06:56.260 Nose SC 100.0x 99.09 0.91 99.59 0.61 GCF_900445265.1 UFTA01 1774 1860 1860 27 12 46 1 Anaerococcus_octavius_homd_HMT_017 GCA_900445275.1 HMT-811 NCTC9697 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-811 Arcanobacterium haemolyticum NCTC9697 44 1888729 53.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/275/GCA_900445275.1_55685_C01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Arcanobacterium;s__Arcanobacterium haemolyticum PRJEB6403 28264 SAMEA104016178 55685_C01 Contig 2017-10-03T08:07:00.456 not available: to be reported later SC 100.0x 98.76 96.26 0 99.57 0.54 GCF_900445275.1 UAPW01 1760 1831 1831 8 10 52 1 Arcanobacterium_haemolyticum_homd_HMT_811 GCA_900445285.1 HMT-738 NCTC11806 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-738 Anaerococcus prevotii NCTC11806 2 2004977 35.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/285/GCA_900445285.1_49888_A01 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus prevotii PRJEB6403 33034 SAMEA44529418 49888_A01 Contig 2017-01-19T14:07:44.110 human plasma SC 100.0x 99.99 99.39 0 99.19 0.23 GCF_900445285.1 UFSY01 1829 1916 1916 26 12 48 1 Anaerococcus_prevotii_homd_HMT_738 GCA_900445305.1 HMT-814 NCTC13935 Named Cultivated Vaginal (Abundance: High) HMT-814 Fannyhessea vaginae NCTC13935 2 1451822 42.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/305/GCA_900445305.1_58174_B01 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Fannyhessea;s__Fannyhessea vaginae PRJEB6403 82135 SAMEA104307699 58174_B01 Contig 2018-01-31T08:06:30.130 Sweden Vagina SC 100.0x 99.99 100 0 99.25 0.27 GCF_900445305.1 UFSV01 1164 1224 1224 8 6 45 1 Fannyhessea_vaginae_homd_HMT_814 GCA_900445495.1 HMT-974 NCTC13052 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-974 Parabacteroides merdae NCTC13052 3 4403124 45.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/495/GCA_900445495.1_52683_B04 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae PRJEB6403 46503 SAMEA48404668 52683_B04 Contig 2017-09-20T08:06:35.253 not available: to be reported later SC 100.0x 99.98 99.62 0 99.97 0.43 GCF_900445495.1 UFTK01 3636 3749 3749 14 19 79 1 Parabacteroides_merdae_homd_HMT_974 GCA_900445575.1 HMT-787 NCTC11853 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-787 Bacteroides pyogenes NCTC11853 4 3495913 46.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/575/GCA_900445575.1_51470_C02 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes_A PRJEB6403 310300 SAMEA4504047 51470_C02 Contig 2017-03-30T12:15:02.246 Abscess SC 100.0x 99.99 98.87 0.56 99.99 0.01 GCF_900445575.1 UFTB01 2873 2988 2988 30 15 69 1 Bacteroides_pyogenes_homd_HMT_787 GCA_900445725.1 HMT-828 NCTC452 Named Cultivated Pathogen (Abundance: Scarce) HMT-828 Bordetella pertussis NCTC452 2 5173845 68.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/725/GCA_900445725.1_46338_F01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella;s__Bordetella pertussis PRJEB6403 518 SAMEA53434168 46338_F01 Contig 2017-02-01T09:06:49.946 Lungs SC 100.0x 99.99 99.21 0.47 100 0.64 GCF_900445725.1 UFTS01 4794 4893 4893 18 12 68 1 Bordetella_pertussis_homd_HMT_828 GCA_900445765.1 HMT-642 NCTC12937 Named Cultivated Oral (Abundance: Scarce) HMT-642 Scardovia inopinata NCTC12937 7 1830728 48.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/765/GCA_900445765.1_53618_F01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia inopinata PRJEB6403 78259 SAMEA101158168 53618_F01 Contig 2017-09-20T08:06:36.830 Dental caries SC 100.0x 99.99 99.3 2.1 96.86 1.91 GCF_900445765.1 UFTI01 1498 1562 1562 13 4 46 1 Scardovia_inopinata_homd_HMT_642 GCA_900445785.1 HMT-828 NCTC5952 Named Cultivated Pathogen (Abundance: Scarce) HMT-828 Bordetella pertussis NCTC5952 2 4775492 68.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/785/GCA_900445785.1_52451_D01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella;s__Bordetella pertussis PRJEB6403 519 SAMEA24553918 52451_D01 Contig 2017-09-20T08:06:33.806 not available: to be reported later SC 100.0x 99.99 100 0 100 0.4 GCF_900445785.1 UFUC01 4509 4603 4603 18 9 66 1 Bordetella_pertussis_homd_HMT_828 GCA_900445915.1 HMT-590 NCTC11164 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-590 Brevundimonas diminuta NCTC11164 12 3408470 67.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/915/GCA_900445915.1_58529_A01 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__Brevundimonas diminuta PRJEB6403 293 SAMEA104338351 58529_A01 Contig 2018-02-15T08:08:02.406 cerebrospinal fluid SC 100.0x 99.65 99.86 0 100 0.1 GCF_900445915.1 UAQN01 3296 3367 3367 13 6 52 0 Brevundimonas_diminuta_homd_HMT_590 GCA_900445995.1 HMT-590 NCTC8545 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-590 Brevundimonas diminuta NCTC8545 2 3438815 67.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/995/GCA_900445995.1_48290_B02 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__Brevundimonas diminuta PRJEB6403 293 SAMEA4040024 48290_B02 Contig 2016-10-06T12:12:42.013 freshwater SC 100.0x 99.99 100 0.48 100 0.14 GCF_900445995.1 UIGE01 3353 3425 3425 14 6 52 0 Brevundimonas_diminuta_homd_HMT_590 GCA_900446175.1 HMT-571 NCTC10743 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-571 Burkholderia cepacia NCTC10743 13 8554913 66.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/446/175/GCA_900446175.1_52223_E01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia cepacia PRJEB6403 292 SAMEA4535749 52223_E01 Contig 2017-05-05T08:08:06.986 not available: to be reported later SC 100.0x 99.99 99.87 0.2 100 0.09 GCF_900446175.1 UAQW01 7710 7868 7868 59 18 80 1 Burkholderia_cepacia_homd_HMT_571 GCA_900446335.1 HMT-623 NCTC12738 Named Cultivated Oral (Abundance: High) HMT-623 Campylobacter gracilis NCTC12738 2 2268496 46.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/446/335/GCA_900446335.1_53205_B01 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B gracilis PRJEB6403 824 SAMEA80446918 53205_B01 Contig 2017-09-20T08:06:36.036 USA Gingival sulcus SC 100.0x 99.99 96.73 0.43 99.91 0.11 GCF_900446335.1 UFUN01 2124 2176 2176 4 5 42 1 Campylobacter_gracilis_homd_HMT_623 GCA_900446595.1 HMT-776 NCTC12474 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-776 Campylobacter sputorum NCTC12474 2 1767425 29.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/446/595/GCA_900446595.1_56931_D02 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F;s__Campylobacter_F sputorum PRJEB6403 32023 SAMEA104167200 56931_D02 Contig 2017-11-24T10:21:10.670 not available: to be reported later SC 100.0x 99.98 99.09 0.18 99.98 0 GCF_900446595.1 UFVG01 1767 1828 1828 5 8 47 1 Campylobacter_sputorum_homd_HMT_776 GCA_900446675.1 HMT-325 NCTC12948 Named Cultivated Oral (Abundance: Medium) HMT-325 Capnocytophaga granulosa NCTC12948 3 2843797 41.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/446/675/GCA_900446675.1_51334_C01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga granulosa PRJEB6403 45242 SAMEA44542168 51334_C01 Contig 2017-03-16T17:07:36.626 Supragingival dental plaque SC 100.0x 99.99 100 2.41 99.45 2.13 GCF_900446675.1 UFVE01 2569 2643 2643 10 9 54 1 Capnocytophaga_granulosa_homd_HMT_325 GCA_900446685.1 HMT-842 NCTC12015 Named Cultivated Skin (Abundance: Medium) HMT-842 Campylobacter ureolyticus NCTC12015 4 1589092 29.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/446/685/GCA_900446685.1_57530_E01 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B ureolyticus PRJEB6403 827 SAMEA104167216 57530_E01 Contig 2018-01-10T08:06:09.850 urethra SC 100.0x 95.91 98.95 1.11 99.99 0.19 GCF_900446685.1 UFVL01 1606 1662 1662 5 6 44 1 Campylobacter_ureolyticus_homd_HMT_842 GCA_900446695.1 HMT-775 NCTC11653 Named Cultivated Oral (Abundance: Medium) HMT-775 Capnocytophaga sputigena NCTC11653 11 3053418 38.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/446/695/GCA_900446695.1_48903_C01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena PRJEB6403 1019 SAMEA4063027 48903_C01 Contig 2016-11-03T11:15:59.500 Periodontal lesion SC 100.0x 99.52 0 99.91 0.31 GCF_900446695.1 UAVP01 2742 2809 2809 7 14 45 1 Capnocytophaga_sputigena_homd_HMT_775 GCA_900446705.1 HMT-700 NCTC11546 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea NCTC11546 44 2946791 39.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/446/705/GCA_900446705.1_57572_F01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJEB6403 1018 SAMEA104210786 57572_F01 Contig 2018-01-10T08:06:10.360 not available: to be reported later SC 100.0x 96.35 100 4.41 99.93 1.93 GCF_900446705.1 UARG01 2612 2684 2684 10 14 47 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_900447395.1 HMT-753 NCTC11467 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-753 Cronobacter sakazakii NCTC11467 11 4691673 56.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/447/395/GCA_900447395.1_28237_B02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter;s__Cronobacter sakazakii PRJEB6403 28141 SAMEA2548138 28237_B02 Contig 2014-08-21T08:06:49.720 not available: to be reported later SC 100.0x 99.96 98.32 0.28 99.13 1.56 GCF_900447395.1 UARI01 4939 5179 5179 123 28 88 1 Cronobacter_sakazakii_homd_HMT_753 GCA_900447475.1 HMT-053 NCTC10289 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-053 Corynebacterium minutissimum NCTC10289 2 2736326 59.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/447/475/GCA_900447475.1_55064_H01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium minutissimum_B PRJEB6403 38301 SAMEA104016176 55064_H01 Contig 2017-09-20T08:06:38.496 not available: to be reported later SC 100.0x 93.61 99.78 0.15 99.99 0.17 GCF_900447475.1 UFXP01 2574 2647 2647 8 12 51 2 Corynebacterium_minutissimum_homd_HMT_053 GCA_900447555.1 HMT-666 NCTC10254 Named Cultivated Oral (Abundance: High) HMT-666 Corynebacterium matruchotii NCTC10254 36 2854659 57.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/447/555/GCA_900447555.1_51470_A02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium matruchotii PRJEB6403 43768 SAMEA4504044 51470_A02 Contig 2017-03-30T12:15:02.050 Oral calculus SC 100.0x 99.99 98.3 0 99.98 0.21 GCF_900447555.1 UARK01 2558 2634 2634 8 14 53 1 Corynebacterium_matruchotii_homd_HMT_666 GCA_900447625.1 HMT-072 NCTC9755 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum NCTC9755 2 2784006 59.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/447/625/GCA_900447625.1_55064_G01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJEB6403 43770 SAMEA104016175 55064_G01 Contig 2017-09-20T08:06:38.473 not available: to be reported later SC 100.0x 98.92 99.67 0.63 99.99 0.75 GCF_900447625.1 UFYO01 2576 2650 2650 8 12 53 1 Corynebacterium_striatum_homd_HMT_072 GCA_900447665.1 HMT-801 NCTC12361 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-801 Enterococcus casseliflavus NCTC12361 4 3555408 42.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/447/665/GCA_900447665.1_44927_C01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D;s__Enterococcus_D casseliflavus PRJEB6403 37734 SAMEA3881059 44927_C01 Contig 2016-05-18T12:09:42.276 not available: to be reported later SC 100.0x 99.99 99.25 0.38 100 1.03 GCF_900447665.1 UGJD01 3388 3527 3527 63 15 60 1 Enterococcus_casseliflavus_homd_HMT_801 GCA_900447675.1 HMT-072 NCTC764 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum NCTC764 3 2924414 59.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/447/675/GCA_900447675.1_51765_E02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJEB6403 43770 SAMEA4521472 51765_E02 Contig 2017-04-06T14:06:56.890 not available: to be reported later SC 100.0x 99.99 99.23 0.75 99.98 1.75 GCF_900447675.1 UFXV01 2728 2806 2806 8 12 57 1 Corynebacterium_striatum_homd_HMT_072 GCA_900450455.1 HMT-105 NCTC12940 Named Cultivated Oral (Abundance: Low) "HMT-105 Peptostreptococcaceae [G1 ""Eubacterium""] infirmum NCTC12940" 2 1906995 40.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/455/GCA_900450455.1_52683_A04 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B infirmum PRJEB6403 56774 SAMEA48403918 52683_A04 Contig 2017-09-20T08:06:35.230 Periodontal pockets SC 100.0x 100 0.71 99.61 0.02 GCF_900450455.1 UGGN01 1744 1821 1821 29 6 41 1 Anaerovoracaceae__G1__infirmum_homd_HMT_105 GCA_900450465.1 HMT-830 NCTC11819 Named Cultivated Vaginal (Abundance: Scarce) HMT-830 Mobiluncus mulieris NCTC11819 8 2510813 55.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/465/GCA_900450465.1_49888_C01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus mulieris PRJEB6403 2052 SAMEA44530918 49888_C01 Contig 2017-01-19T14:07:44.263 Vagina SC 100.0x 98.92 99.53 0.95 99.93 1.67 GCF_900450465.1 UGGQ01 2191 2251 2251 6 7 45 2 Mobiluncus_mulieris_homd_HMT_830 GCA_900450505.1 HMT-602 NCTC12994 Named Cultivated Oral (Abundance: Scarce) HMT-602 Slackia exigua NCTC12994 2 2102748 62.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/505/GCA_900450505.1_51765_F02 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia;s__Slackia exigua PRJEB6403 84109 SAMEA4521473 51765_F02 Contig 2017-04-06T14:06:56.983 Necrotic pulp samples SC 100.0x 99.99 100 0 98.82 1.18 GCF_900450505.1 UGGM01 1722 1792 1792 11 9 49 1 Slackia_exigua_homd_HMT_602 GCA_900450675.1 HMT-945 NCTC 8479 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus NCTC 8479 2 2096197 40.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/675/GCA_900450675.1_53694_G01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus PRJEB6403 1095744 SAMEA87363418 53694_G01 Contig 2017-09-20T08:06:36.660 USA: S.Carolina Chronic pulmonary infection SC 100.0x 99.99 99.43 0.3 100 0.01 GCF_900450675.1 UGHI01 1955 2060 2060 26 18 60 1 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_900450755.1 HMT-535 NCTC8135 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius NCTC8135 3 1922958 38.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/755/GCA_900450755.1_46514_C02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB6403 197575 SAMEA4557826 46514_C02 Contig 2016-12-07T13:09:33.370 not available: to be reported later SC 100.0x 97.71 99.77 0 100 0.29 GCF_900450755.1 UGHG01 1854 1982 1982 36 27 64 1 Haemophilus_aegyptius_homd_HMT_535 GCA_900450795.1 HMT-200 NCTC11326 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii NCTC11326 3 2129752 27.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/795/GCA_900450795.1_50569_D01 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJEB6403 155615 SAMEA4412663 50569_D01 Contig 2017-01-25T12:05:50.206 France: Lille Upper Jaw SC 100.0x 97.61 100 1.5 99.99 0.15 GCF_900450795.1 UGGX01 1972 2055 2055 17 18 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_900450845.1 HMT-718 NCTC 7857 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae NCTC 7857 2 2148353 39.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/845/GCA_900450845.1_45473_E02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJEB6403 888828 SAMEA53433418 45473_E02 Contig 2017-02-01T09:06:49.846 not available: to be reported later SC 100.0x 99.99 99.89 0.23 100 1.31 GCF_900450845.1 UGHU01 1983 2113 2113 55 19 55 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_900450865.1 HMT-946 NCTC13335 Named Cultivated Oral (Abundance: Medium) HMT-946 Haemophilus pittmaniae NCTC13335 5 2244325 42.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/865/GCA_900450865.1_57675_F01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D pittmaniae PRJEB6403 249188 SAMEA104210807 57675_F01 Contig 2018-01-10T08:06:10.710 Denmark urine SC 100.0x 98.47 99.58 1.27 100 1.18 GCF_900450865.1 UGHS01 2045 2134 0 0 26 62 1 Haemophilus_pittmaniae_homd_HMT_946 GCA_900450875.1 HMT-945 NCTC10794 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus NCTC10794 3 2163754 40.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/875/GCA_900450875.1_33922_E01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus PRJEB6403 735 SAMEA3207626 33922_E01 Contig 2015-02-25T11:25:14.210 not available: to be reported later SC 100.0x 95.99 99.23 0.23 99.9 0.86 GCF_900450875.1 UGHH01 2167 2273 2273 26 19 60 1 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_900450995.1 HMT-718 NCTC10672 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae NCTC10672 2 2236386 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/995/GCA_900450995.1_33922_D01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_O PRJEB6403 729 SAMEA3207621 33922_D01 Contig 2015-02-25T11:25:13.906 not available: to be reported later SC 100.0x 93.14 99.83 0 100 0.39 GCF_900450995.1 UGHY01 2262 2409 2409 69 19 58 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_900451065.1 HMT-035 NCTC10671 Named Cultivated Oral (Abundance: High) HMT-035 Haemophilus paraphrohaemolyticus NCTC10671 3 2138467 40.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/451/065/GCA_900451065.1_45473_G02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A paraphrohaemolyticus PRJEB6403 736 SAMEA3905386 45473_G02 Contig 2016-06-15T09:07:30.960 sputum SC 100.0x 99.99 99.43 0.34 100 0 GCF_900451065.1 UGHT01 2036 2146 2146 30 19 60 1 Haemophilus_paraphrohaemolyticus_homd_HMT_035 GCA_900451155.1 HMT-646 NCTC10746 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae NCTC10746 5 2092391 46.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/451/155/GCA_900451155.1_54669_F01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB6403 504 SAMEA103924409 54669_F01 Contig 2017-09-20T08:06:37.900 blood SC 100.0x 98.41 98.87 1.08 100 1.28 GCF_900451155.1 UGJI01 2172 2254 2254 13 12 56 1 Kingella_kingae_homd_HMT_646 GCA_900451365.1 HMT-582 NCTC10995 Named Cultivated Oral (Abundance: Medium) HMT-582 Kingella denitrificans NCTC10995 2 2243142 54.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/451/365/GCA_900451365.1_50569_C01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_A;s__Kingella_A denitrificans PRJEB6403 502 SAMEA4412662 50569_C01 Contig 2017-01-21T17:05:29.993 USA: Atlanta, GA Pharynx SC 100.0x 99.99 99.5 0.68 99.97 0.72 GCF_900451365.1 UGJL01 2192 2269 2269 8 12 56 1 Kingella_denitrificans_homd_HMT_582 GCA_900452265.1 HMT-865 NCTC9737 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-865 Kluyvera ascorbata NCTC9737 5 5126625 54.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/452/265/GCA_900452265.1_54949_C01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera;s__Kluyvera ascorbata PRJEB6403 51288 SAMEA103980416 54949_C01 Contig 2017-09-20T08:06:38.046 Uruguay: Montevideo urine SC 100.0x 99.97 99.69 0.67 100 0.01 GCF_900452265.1 UGNM01 4801 5062 5062 146 25 89 1 Kluyvera_ascorbata_homd_HMT_865 GCA_900452355.1 HMT-615 NCTC13722 Named Cultivated Vaginal (Abundance: High) HMT-615 Lactobacillus gasseri NCTC13722 3 1899682 35.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/452/355/GCA_900452355.1_44087_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus gasseri PRJEB6403 1596 SAMEA3856682 44087_F01 Contig 2016-04-20T10:27:01.276 United Kingdom: Reading not available: to be reported later SC 100.0x 99.99 98.45 0.43 99.98 1.56 GCF_900452355.1 UGNT01 1794 1923 1923 34 18 76 1 Lactobacillus_gasseri_homd_HMT_615 GCA_900452405.1 HMT-855 NCTC11040 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-855 Kytococcus sedentarius NCTC11040 2 2803893 71.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/452/405/GCA_900452405.1_49508_H02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Kytococcus;s__Kytococcus sedentarius PRJEB6403 1276 SAMEA4076716 49508_H02 Contig 2016-12-21T09:11:35.350 Sea Water SC 100.0x 99.99 94.68 0 99.97 0.34 GCF_900452405.1 UGNQ01 2644 2726 2726 24 6 51 1 Kytococcus_sedentarius_homd_HMT_855 GCA_900452585.1 HMT-861 NCTC13644 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-861 Lactiplantibacillus plantarum NCTC13644 12 3249549 44.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/452/585/GCA_900452585.1_55064_C01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum PRJEB6403 337330 SAMEA104016171 55064_C01 Contig 2017-09-20T08:06:38.390 Pickled cabbage SC 100.0x 99.96 98.25 2.16 99.76 2.54 UASU01 3349 3434 0 0 17 67 1 Lactiplantibacillus_plantarum_homd_HMT_861 GCA_900453095.1 HMT-833 NCTC3622 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis NCTC3622 8 2026608 41.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/453/095/GCA_900453095.1_52347_C01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJEB6403 480 SAMEA4552895 52347_C01 Contig 2017-09-20T08:06:33.316 throat SC 100.0x 95.81 98.99 0.7 100 0.57 GCF_900453095.1 UGPU01 1874 1951 1951 7 15 54 1 Moraxella_catarrhalis_homd_HMT_833 GCA_900453115.1 HMT-711 NCTC10465 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-711 Moraxella osloensis NCTC10465 6 2691416 43.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/453/115/GCA_900453115.1_50450_C01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella_A;s__Moraxella_A osloensis PRJEB6403 34062 SAMEA4384066 50450_C01 Contig 2017-01-19T14:06:50.680 USA: Atlanta, GA cerebrospinal fluid SC 100.0x 99.99 99.71 0 100 0.09 GCF_900453115.1 UGPY01 2372 2533 2533 100 12 48 1 Moraxella_osloensis_homd_HMT_711 GCA_900453215.1 HMT-830 NCTC11658 Named Cultivated Vaginal (Abundance: Scarce) HMT-830 Mobiluncus mulieris NCTC11658 12 2529093 55.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/453/215/GCA_900453215.1_50861_D01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus mulieris PRJEB6403 2052 SAMEA4434523 50861_D01 Contig 2017-02-09T08:08:15.300 Vaginal discharge SC 100.0x 99.99 99.53 1.9 99.92 2.46 GCF_900453215.1 UASV01 2213 2272 2272 6 6 45 2 Mobiluncus_mulieris_homd_HMT_830 GCA_900453275.1 HMT-830 NCTC11497 Named Cultivated Vaginal (Abundance: Scarce) HMT-830 Mobiluncus mulieris NCTC11497 7 2661365 54.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/453/275/GCA_900453275.1_57792_B02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus mulieris PRJEB6403 2052 SAMEA104224798 57792_B02 Contig 2018-01-26T11:05:28.473 United Kingdom: Newcastle High vaginal swab SC 100.0x 98.59 99.53 2.37 99.98 3.84 GCF_900453275.1 UGPX01 2334 2393 2393 7 6 45 1 Mobiluncus_mulieris_homd_HMT_830 GCA_900453805.1 HMT-610 NCTC8263 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens NCTC8263 4 2291788 49.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/453/805/GCA_900453805.1_46338_A01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens PRJEB6403 484 SAMEA3936792 46338_A01 Contig 2016-07-20T09:10:42.813 not available: to be reported later SC 100.0x 99.99 99.62 0.34 100 0.13 GCF_900453805.1 UGQV01 2250 2349 2349 20 12 66 1 Neisseria_flavescens_homd_HMT_610 GCA_900453895.1 HMT-598 NCTC10660 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata NCTC10660 2 2406516 53.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/453/895/GCA_900453895.1_42925_E01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJEB6403 495 SAMEA3672883 42925_E01 Contig 2016-02-22T12:05:55.490 Pharynx SC 100.0x 99.99 99.9 0.23 99.99 0 GCF_900453895.1 UGQW01 2228 2319 2319 12 15 63 1 Neisseria_elongata_homd_HMT_598 GCA_900453905.1 HMT-610 NCTC9388 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens NCTC9388 39 2283263 49.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/453/905/GCA_900453905.1_58075_B01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens PRJEB6403 487 SAMEA104307671 58075_B01 Contig 2018-01-26T11:05:30.960 USA: Chicago not available: to be reported later SC 100.0x 89.32 99.51 0.48 100 0.34 GCF_900453905.1 UATC01 2307 2402 2402 19 11 64 1 Neisseria_flavescens_homd_HMT_610 GCA_900454015.1 HMT-610 NCTC9390 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens NCTC9390 10 2284162 49.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/015/GCA_900454015.1_58075_C01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens PRJEB6403 487 SAMEA104307672 58075_C01 Contig 2018-01-26T11:05:30.980 USA: Chicago not available: to be reported later SC 100.0x 89.3 99.7 0.45 100 0.07 GCF_900454015.1 UATE01 2246 2353 2353 19 18 69 1 Neisseria_flavescens_homd_HMT_610 GCA_900454095.1 HMT-649 NCTC10618 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica NCTC10618 2 2106061 52.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/095/GCA_900454095.1_34576_G01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJEB6403 486 SAMEA3174296 34576_G01 Contig 2015-04-01T08:07:03.130 not available: to be reported later SC 100.0x 97.43 99.92 0 100 0.14 GCF_900454095.1 UGRN01 1937 2044 2044 27 12 67 1 Neisseria_lactamica_homd_HMT_649 GCA_900454145.1 HMT-649 NCTC10616 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica NCTC10616 3 2185892 52.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/145/GCA_900454145.1_54949_A01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJEB6403 486 SAMEA103980413 54949_A01 Contig 2017-09-20T08:06:37.996 USA: Los Angeles, CA Spinal fluid SC 100.0x 97.67 99.92 1.35 100 1.21 GCF_900454145.1 UGRO01 1955 2056 2056 21 15 64 1 Neisseria_lactamica_homd_HMT_649 GCA_900454235.1 HMT-544 NCTC12168 Named Cultivated Pathogen (Abundance: Scarce) HMT-544 Brucella anthropi NCTC12168 5 5239764 56.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/235/GCA_900454235.1_34576_A02 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Brucella;s__Brucella anthropi PRJEB6403 529 SAMEA3146533 34576_A02 Contig 2015-04-01T08:07:03.036 not available: to be reported later SC 100.0x 99.99 100 0 100 0.53 GCF_900454235.1 UGSA01 5117 5269 5269 77 12 62 1 Brucella_anthropi_homd_HMT_544 GCA_900454435.1 HMT-682 NCTC 10774 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa NCTC 10774 6 2654294 51.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/435/GCA_900454435.1_55147_F01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJEB6403 488 SAMEA104062571 55147_F01 Contig 2017-09-20T08:06:38.683 Pharyngeal mucosa SC 100.0x 99.7 0.23 100 0.31 GCF_900454435.1 UGRT01 2471 2564 2564 16 15 61 1 Neisseria_mucosa_homd_HMT_682 GCA_900454605.1 HMT-542 NCTC11460 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius NCTC11460 5 2256756 35.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/605/GCA_900454605.1_51470_H02 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJEB6403 1261 SAMEA4504051 51470_H02 Contig 2017-03-30T12:15:02.480 not available: to be reported later SC 100.0x 99.99 100 0 99.88 0.68 GCF_900454605.1 UGTB01 2070 2230 2230 80 18 61 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_900454665.1 HMT-840 NCTC11088 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-840 Peptoniphilus indolicus NCTC11088 4 2247968 31.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/665/GCA_900454665.1_51765_G01 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus;s__Peptoniphilus indolicus PRJEB6403 33030 SAMEA4521465 51765_G01 Contig 2017-04-06T14:06:56.436 not available: to be reported later SC 100.0x 99.86 99.65 0 100 1.93 GCF_900454665.1 UGTH01 2149 2238 2238 36 10 42 1 GCA_900454685.1 HMT-109 NCTC13076 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-109 Peptoniphilus harei NCTC13076 36 2168934 33.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/685/GCA_900454685.1_52278_A01 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A harei PRJEB6403 54005 SAMEA4535753 52278_A01 Contig 2017-05-05T08:08:07.126 United Kingdom Pus from sacral sore SC 100.0x 99.98 99.3 4.2 99.78 3.52 GCF_900454685.1 UATM01 2140 2245 2245 54 9 41 1 Peptoniphilus_harei_homd_HMT_109 GCA_900454715.1 HMT-836 NCTC13149 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-836 Peptoniphilus lacrimalis NCTC13149 2 1883562 30.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/715/GCA_900454715.1_52700_C01 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacrimalis PRJEB6403 33031 SAMEA48406918 52700_C01 Contig 2017-09-20T08:06:35.320 eye SC 100.0x 99.97 99.3 1.4 99.51 0.69 GCF_900454715.1 UGSZ01 1755 1852 1852 42 9 45 1 Peptoniphilus_lacrimalis_homd_HMT_836 GCA_900454815.1 HMT-273 NCTC13058 Named Cultivated Oral (Abundance: High) HMT-273 Porphyromonas endodontalis NCTC13058 2 2111739 47.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/815/GCA_900454815.1_52278_C01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas endodontalis PRJEB6403 28124 SAMEA4535757 52278_C01 Contig 2017-05-05T08:08:07.193 Root canal SC 100.0x 99.99 99.61 0 98.61 0.26 GCF_900454815.1 UGTE01 1788 1863 1863 9 13 52 1 Porphyromonas_endodontalis_homd_HMT_273 GCA_900454835.1 HMT-291 NCTC13067 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola NCTC13067 3 3171703 49.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/835/GCA_900454835.1_52295_A01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJEB6403 28129 SAMEA4535751 52295_A01 Contig 2017-05-05T08:08:07.046 Oral Cavity SC 100.0x 99.99 99.21 0 99.98 0.94 GCF_900454835.1 UGTM01 2570 2645 2645 8 14 52 1 Prevotella_denticola_homd_HMT_291 GCA_900454855.1 HMT-560 NCTC13063 Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae NCTC13063 3 3122366 51.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/855/GCA_900454855.1_57800_F01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJEB6403 28126 SAMEA104224811 57800_F01 Contig 2018-01-26T11:05:28.733 Dental plaque SC 100.0x 98.67 99.31 0.34 99.97 0.01 GCF_900454855.1 UGTJ01 2527 2606 2606 6 15 57 1 Segatella_buccae_homd_HMT_560 GCA_900454935.1 HMT-714 NCTC13043 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens NCTC13043 7 3108714 37.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/935/GCA_900454935.1_57800_C01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJEB6403 60133 SAMEA104224808 57800_C01 Contig 2018-01-26T11:05:28.673 Oral cavity SC 100.0x 98.25 99.66 0 99.89 0.3 GCF_900454935.1 UGTP01 2573 2650 2650 10 17 49 1 Prevotella_pallens_homd_HMT_714 GCA_900454985.1 HMT-693 NCTC9336 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens NCTC9336 5 2715986 42.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/985/GCA_900454985.1_53750_E01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJEB6403 28133 SAMEA103899859 53750_E01 Contig 2017-09-20T08:06:37.466 United Kingdom: London Vincents gingivitis SC 100.0x 99.99 99.31 0 99.98 0.14 GCF_900454985.1 UGTN01 2318 2386 2386 7 12 48 1 Prevotella_nigrescens_homd_HMT_693 GCA_900455005.1 HMT-643 NCTC13070 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia NCTC13070 2 2607163 43.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/455/005/GCA_900455005.1_50624_A01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJEB6403 28131 SAMEA4412688 50624_A01 Contig 2017-01-25T12:05:51.840 not available: to be reported later SC 100.0x 99.99 99.32 0 99.93 0.04 GCF_900455005.1 UGTO01 2196 2269 2269 11 13 48 1 Prevotella_intermedia_homd_HMT_643 GCA_900455515.1 HMT-344 NCTC11842 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-344 Pseudomonas luteola NCTC11842 16 6089776 54.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/455/515/GCA_900455515.1_43251_F01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B;s__Pseudomonas_B luteola PRJEB6403 47886 SAMEA3711441 43251_F01 Contig 2016-03-15T10:08:34.903 Gall Bladder SC 100.0x 98.03 99.3 2.06 100 1.66 GCF_900455515.1 UAUF01 5843 6003 6003 63 24 72 1 Pseudomonas_luteola_homd_HMT_344 GCA_900455615.1 HMT-740 NCTC10692 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-740 Pseudomonas oleovorans NCTC10692 5 5049026 61.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/455/615/GCA_900455615.1_44343_C01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E oleovorans PRJEB6403 301 SAMEA3871776 44343_C01 Contig 2016-04-27T09:12:16.800 not available: to be reported later SC 100.0x 99.99 99.84 3.22 100 2.5 GCF_900455615.1 UGUV01 4838 5107 5107 187 12 69 1 Pseudomonas_oleovorans_homd_HMT_740 GCA_900455835.1 HMT-854 NCTC11149 Named Cultivated Oral (Abundance: Scarce) HMT-854 Ralstonia pickettii NCTC11149 5 4810167 63.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/455/835/GCA_900455835.1_51699_E01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;s__Ralstonia pickettii PRJEB6403 329 SAMEA4504058 51699_E01 Contig 2017-04-06T14:06:55.413 USA: California (State) not available: to be reported later SC 100.0x 99.99 99.94 0.01 99.98 0.4 GCF_900455835.1 UGVF01 4434 4535 4535 30 11 59 1 Ralstonia_pickettii_homd_HMT_854 GCA_900455895.1 HMT-587 NCTC10917 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa NCTC10917 2 2490333 53.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/455/895/GCA_900455895.1_49699_C02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJEB6403 2047 SAMEA44521918 49699_C02 Contig 2017-01-19T14:07:43.850 Carious teeth SC 100.0x 99.99 99.34 0.66 100 0.24 GCF_900455895.1 UGVM01 2146 2218 2218 14 8 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_900455935.1 HMT-245 NCTC13291 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-245 Roseomonas mucosa NCTC13291 4 5000569 70.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/455/935/GCA_900455935.1_50624_C01 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas;s__Roseomonas mucosa PRJEB6403 207340 SAMEA4412690 50624_C01 Contig 2017-01-25T12:05:51.963 USA: Houston, TX blood SC 100.0x 99.99 100 0.5 100 0.51 GCF_900455935.1 UGVN01 4525 4636 4636 24 15 71 1 Roseomonas_mucosa_homd_HMT_245 GCA_900458255.1 HMT-117 NCTC11041 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-117 Staphylococcus cohnii NCTC11041 2 2694244 32.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/255/GCA_900458255.1_44343_D01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus cohnii PRJEB6403 29382 SAMEA3871778 44343_D01 Contig 2016-04-27T09:12:16.860 USA skin SC 100.0x 99.95 98.9 0 99.99 0.17 GCF_900458255.1 UHDA01 2623 2754 2754 51 19 60 1 Staphylococcus_cohnii_homd_HMT_117 GCA_900458385.1 HMT-567 NCTC12196 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-567 Staphylococcus caprae NCTC12196 6 2652349 33.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/385/GCA_900458385.1_35910_C02 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus caprae PRJEB6403 29380 SAMEA3233549 35910_C02 Contig 2015-05-13T13:09:24.020 not available: to be reported later SC 100.0x 99.99 99.8 0 99.94 0.12 GCF_900458385.1 UHCW01 2535 2695 2695 80 19 60 1 Staphylococcus_caprae_homd_HMT_567 GCA_900458595.1 HMT-120 NCTC11042 Named Cultivated Nasal (Abundance: Low) HMT-120 Staphylococcus haemolyticus NCTC11042 4 2569468 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/595/GCA_900458595.1_36734_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus haemolyticus PRJEB6403 1283 SAMEA3233544 36734_F01 Contig 2015-05-13T13:09:23.760 not available: to be reported later SC 100.0x 99.98 99.39 0 99.99 0.05 GCF_900458595.1 UHDN01 2444 2527 0 0 19 63 1 Staphylococcus_haemolyticus_homd_HMT_120 GCA_900458605.1 HMT-601 NCTC11047 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis NCTC11047 5 2538008 32.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/605/GCA_900458605.1_35910_G02 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJEB6403 1282 SAMEA3233545 35910_G02 Contig 2015-05-13T13:09:23.810 Czechoslovakia not available: to be reported later SC 100.0x 99.99 99.7 0.67 99.98 0.78 GCF_900458605.1 UHDF01 2364 2528 2528 84 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_900458635.1 HMT-127 NCTC 11320 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis NCTC 11320 2 2257110 31.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/635/GCA_900458635.1_41665_G01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJEB6403 1290 SAMEA3539708 41665_G01 Contig 2015-12-09T08:06:58.746 skin SC 100.0x 99.94 99.24 0.59 99.99 0.06 GCF_900458635.1 UHDM01 2173 2308 2308 53 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_900458715.1 HMT-076 NCTC10518 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NCTC10518 2 2498415 32.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/715/GCA_900458715.1_41594_E01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJEB6403 1292 SAMEA3539701 41594_E01 Contig 2015-12-02T09:23:55.566 United Kingdom: Bedford Hot Water SC 100.0x 99.83 99.73 0.28 100 0.13 GCF_900458715.1 UHEK01 2359 2441 0 0 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_900458745.1 HMT-127 NCTC 7802 Named Cultivated Skin (Abundance: High) HMT-127 Staphylococcus hominis NCTC 7802 2 2251523 31.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/745/GCA_900458745.1_40871_D01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis PRJEB6403 1290 SAMEA3500276 40871_D01 Contig 2015-11-05T08:10:54.946 Nail (Handler of pressed Beef) SC 100.0x 98.78 99.38 1.74 99.99 0.31 GCF_900458745.1 UHDX01 2170 2300 2300 48 19 62 1 Staphylococcus_hominis_homd_HMT_127 GCA_900458815.1 HMT-789 NCTC11807 Named Cultivated Skin (Abundance: Medium) HMT-789 Staphylococcus saccharolyticus NCTC11807 2 2366437 32.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/815/GCA_900458815.1_49699_H02 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus saccharolyticus PRJEB6403 33028 SAMEA44527168 49699_H02 Contig 2017-01-21T17:05:45.553 not available: to be reported later SC 100.0x 99.99 96.43 1.26 99.24 0.03 GCF_900458815.1 UHDZ01 2650 2778 2778 52 16 59 1 Staphylococcus_saccharolyticus_homd_HMT_789 GCA_900458845.1 HMT-117 NCTC7623 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-117 Staphylococcus cohnii NCTC7623 2 2672175 32.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/845/GCA_900458845.1_53750_H01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus cohnii PRJEB6403 29382 SAMEA101174668 53750_H01 Contig 2017-09-20T08:06:37.250 United Kingdom ice cream SC 100.0x 99.78 98.9 0 99.99 0.26 GCF_900458845.1 UHEC01 2585 2712 2712 46 19 61 1 Staphylococcus_cohnii_homd_HMT_117 GCA_900458895.2 HMT-233 NCTC12218 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-233 Staphylococcus schleiferi NCTC12218 1 2522243 36.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/895/GCA_900458895.2_GCA_900458895 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus schleiferi PRJEB6403 1295 SAMEA3221103 GCA_900458895 Complete Genome 2015-03-18T08:09:22.090 not available: to be reported later SC 100.0x 99.98 GCF_900458895.1 2437 2630 2630 114 19 59 1 Staphylococcus_schleiferi_homd_HMT_233 GCA_900458965.1 HMT-537 NCTC8181 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-537 Streptococcus agalactiae NCTC8181 12 2448053 35.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/458/965/GCA_900458965.1_43188_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae PRJEB6403 1311 SAMEA3696441 43188_F01 Contig 2016-03-15T10:08:34.256 milk SC 100.0x 99.98 99.65 0 99.99 0.43 GCF_900458965.1 UAVB01 2544 2764 2764 118 21 80 1 Streptococcus_agalactiae_homd_HMT_537 GCA_900459125.1 HMT-576 NCTC11325 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus NCTC11325 2 1906855 38.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/459/125/GCA_900459125.1_49569_C01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJEB6403 76860 SAMEA4076719 49569_C01 Contig 2016-12-21T09:11:35.603 France: Paris not available: to be reported later SC 100.0x 99.99 99 0.5 99.98 0.21 GCF_900459125.1 UHFC01 1806 1952 1952 74 12 59 1 Streptococcus_constellatus_homd_HMT_576 GCA_900459175.1 HMT-594 NCTC 11391 Named Cultivated Oral (Abundance: Scarce) HMT-594 Streptococcus downei NCTC 11391 3 2232110 43.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/459/175/GCA_900459175.1_52087_B01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus downei PRJEB6403 764290 SAMEA4534871 52087_B01 Contig 2017-04-20T08:06:46.296 United Kingdom: London Dental Plaque SC 100.0x 99.25 0.54 99.99 0.64 GCF_900459175.1 UHFA01 2066 2202 2202 47 19 69 1 Streptococcus_downei_homd_HMT_594 GCA_900459325.1 HMT-576 NCTC11063 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus NCTC11063 2 1943143 38.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/459/325/GCA_900459325.1_42042_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJEB6403 33040 SAMEA3597584 42042_F01 Contig 2016-01-20T08:08:16.393 Netherlands: Utrecht throat SC 100.0x 99.35 0.4 99.98 0.17 GCF_900459325.1 UHFT01 1846 1954 1954 36 12 59 1 Streptococcus_constellatus_homd_HMT_576 GCA_900459345.1 HMT-686 NCTC10923 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NCTC10923 2 2022743 37.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/459/345/GCA_900459345.1_36725_E02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJEB6403 1309 SAMEA3307891 36725_E02 Contig 2015-06-10T08:09:19.100 United Kingdom not available: to be reported later SC 100.0x 99.04 100 1.01 100 0.28 GCF_900459345.1 UHFQ01 1886 2017 2017 53 15 62 1 Streptococcus_mutans_homd_HMT_686 GCA_900459415.1 HMT-638 NCTC13771 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 NCTC13771 6 2023648 38.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/459/415/GCA_900459415.1_45473_C02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis PRJEB6403 68892 SAMEA3905383 45473_C02 Contig 2016-06-15T09:07:30.763 not available: to be reported later SC 100.0x 99.99 100 2.32 100 2.73 GCF_900459415.1 UHFU01 1991 2101 0 37 12 60 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_900459415.1 HMT-638 NCTC13771 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 NCTC13771 6 2023648 38.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/459/415/GCA_900459415.1_45473_C02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis PRJEB6403 68892 SAMEA3905383 45473_C02 Contig 2016-06-15T09:07:30.763 not available: to be reported later SC 100.0x 99.99 100 2.32 100 2.73 GCF_900459415.1 UHFU01 1991 2101 0 37 12 60 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_900459425.1 HMT-677 NCTC12261 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis NCTC12261 3 1879851 40.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/459/425/GCA_900459425.1_42042_B02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis PRJEB6403 28037 SAMEA3597588 42042_B02 Contig 2016-01-20T08:08:16.680 Denmark Oral Caviity SC 100.0x 99.99 99.42 0.4 99.99 0.09 GCF_900459425.1 UHFS01 1728 1858 1858 48 17 64 1 Streptococcus_mitis_homd_HMT_677 GCA_900460235.1 HMT-524 NCTC11830 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica NCTC11830 8 2107942 39.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/460/235/GCA_900460235.1_51485_B02 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJEB6403 39777 SAMEA4475705 51485_B02 Contig 2017-03-30T12:15:01.340 Mouth SC 100.0x 99.99 100 0.6 100 1.09 GCF_900460235.1 UHIF01 1958 2037 2037 19 9 50 1 Veillonella_atypica_homd_HMT_524 GCA_900460465.1 HMT-827 NCTC5923 Named Cultivated Pathogen (Abundance: Scarce) HMT-827 Yersinia pestis NCTC5923 12 4777134 47.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/460/465/GCA_900460465.1_57940_B01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;s__Yersinia pestis PRJEB6403 632 SAMEA104281628 57940_B01 Contig 2018-01-26T11:05:29.626 not available: to be reported later SC 100.0x 99.53 0.22 100 0.32 GCF_900460465.1 UAVH01 4284 4643 4643 269 19 70 1 Yersinia_pestis_homd_HMT_827 GCA_900460785.1 HMT-776 NCTC12475 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-776 Campylobacter sputorum NCTC12475 2 1767942 29.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/460/785/GCA_900460785.1_57029_G02 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F;s__Campylobacter_F sputorum PRJEB6403 32024 SAMEA104167202 57029_G02 Contig 2017-11-29T08:05:27.850 not available: to be reported later SC 100.0x 99.98 99.14 1.11 99.97 0.6 GCF_900460785.1 UFVD01 1777 1836 1836 5 6 47 1 Campylobacter_sputorum_homd_HMT_776 GCA_900460885.1 HMT-842 NCTC10941 Named Cultivated Skin (Abundance: Medium) HMT-842 Campylobacter ureolyticus NCTC10941 2 1833655 28.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/460/885/GCA_900460885.1_53694_D01 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B;s__Campylobacter_B ureolyticus PRJEB6403 827 SAMEA87358168 53694_D01 Contig 2017-09-20T08:06:36.596 Canada: Alberta amniotic fluid SC 100.0x 99.99 98.95 0 99.99 0.13 GCF_900460885.1 UFUU01 1816 1878 1878 6 8 47 1 Campylobacter_ureolyticus_homd_HMT_842 GCA_900460915.1 HMT-700 NCTC11545 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea NCTC11545 12 2809526 39.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/460/915/GCA_900460915.1_57428_A02 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJEB6403 1018 SAMEA104210763 57428_A02 Contig 2017-12-20T09:06:10.540 not available: to be reported later SC 100.0x 96.33 97.94 0 99.93 0.44 GCF_900460915.1 UAVS01 2536 2612 2612 10 15 50 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_900460955.1 HMT-540 NCTC13294 Named Cultivated Oral (Abundance: Medium) HMT-540 Cardiobacterium valvarum NCTC13294 2 2755518 57.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/460/955/GCA_900460955.1_51726_F01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium valvarum PRJEB6403 194702 SAMEA4412709 51726_F01 Contig 2017-02-01T09:06:26.066 Blood culture SC 100.0x 99.97 98.28 0 89.66 0.24 GCF_900460955.1 UFUW01 2626 2705 2705 16 9 53 1 Cardiobacterium_valvarum_homd_HMT_540 GCA_900461185.1 HMT-047 NCTC11913 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium NCTC11913 2 2526027 61.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/461/185/GCA_900461185.1_48853_B02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium PRJEB6403 38289 SAMEA4017703 48853_B02 Contig 2016-09-28T17:31:39.893 blood SC 100.0x 99.99 100 1.13 99.97 1.06 GCF_900461185.1 UFXO01 2219 2286 0 6 9 51 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_900461225.1 HMT-858 NCTC10698 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-858 Comamonas testosteroni NCTC10698 7 5523746 61.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/461/225/GCA_900461225.1_51108_F01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas testosteroni PRJEB6403 285 SAMEA4442462 51108_F01 Contig 2017-02-22T11:09:12.900 soil SC 100.0x 99.99 99.85 1.08 100 0.81 GCF_900461225.1 UFXL01 4965 5125 5125 35 20 104 1 Comamonas_testosteroni_homd_HMT_858 GCA_900461255.1 HMT-047 NCTC11917 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium NCTC11917 2 2500328 61.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/461/255/GCA_900461255.1_46983_H01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium PRJEB6403 38289 SAMEA4017710 46983_H01 Contig 2016-08-17T12:12:16.503 United Kingdom: Surrey Vagina SC 100.0x 96.9 100 0.9 99.96 0.65 GCF_900461255.1 UIGW01 2158 2228 0 7 9 53 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_900461385.1 HMT-031 NCTC7243 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum NCTC7243 6 2638280 58.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/461/385/GCA_900461385.1_52465_H02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJEB6403 43765 SAMEA26384668 52465_H02 Contig 2017-09-20T08:06:34.093 United Kingdom: Manchester Nose SC 100.0x 96.86 100 0.17 100 0.3 GCF_900461385.1 UFXE01 2274 2371 2371 14 26 56 1 Corynebacterium_amycolatum_homd_HMT_031 GCA_900474705.1 HMT-128 NCTC7990 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis NCTC7990 1 2547699 33.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/474/705/GCA_900474705.1_41236_B02 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJEB6403 28035 SAMEA3518001 41236_B02 Complete Genome 2015-11-18T09:08:12.400 United Kingdom: Liverpool Blood Culture SC 100.0x 99.43 99.49 0 100 0.03 GCF_900474705.1 2360 2522 2522 81 19 61 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_900474885.1 HMT-745 NCTC12046 Named Cultivated Pathogen (Abundance: Scarce) HMT-745 Streptococcus pyogenes NCTC12046 1 1875632 38.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/474/885/GCA_900474885.1_41851_E01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes PRJEB6403 1314 SAMEA3572427 41851_E01 Complete Genome 2015-12-16T09:08:52.520 USA not available: to be reported later SC 100.0x 98.71 99.85 0 99.99 0.08 GCF_900474885.1 1800 1934 1934 48 18 67 1 Streptococcus_pyogenes_homd_HMT_745 GCA_900475015.1 HMT-622 NCTC7865 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii NCTC7865 1 2187611 40.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/015/GCA_900475015.1_41975_E01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJEB6403 1302 SAMEA3594362 41975_E01 Complete Genome 2016-01-13T08:12:42.880 not available: to be reported later SC 100.0x 99.99 100 0 100 0.15 GCF_900475015.1 2058 2176 2176 46 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_900475045.1 HMT-758 NCTC11085 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis NCTC11085 1 2449527 42.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/045/GCA_900475045.1_42290_B02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJEB6403 1305 SAMEA3632064 42290_B02 Complete Genome 2016-01-20T08:08:20.780 Norway: Oslo throat SC 100.0x 95.37 100 0 100 0.09 GCF_900475045.1 2318 2423 2423 32 12 60 1 Streptococcus_sanguinis_homd_HMT_758 GCA_900475095.1 HMT-686 NCTC10449 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NCTC10449 1 2019343 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/095/GCA_900475095.1_42197_E01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJEB6403 1309 SAMEA3614266 42197_E01 Complete Genome 2016-01-20T08:08:18.890 Carious dentine SC 100.0x 99.99 100 0 100 0.06 GCF_900475095.1 1888 1998 1998 29 15 65 1 Streptococcus_mutans_homd_HMT_686 GCA_900475215.1 HMT-612 NCTC10038 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-612 Pseudomonas fluorescens NCTC10038 1 6515171 59.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/215/GCA_900475215.1_42727_B01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E fluorescens PRJEB6403 294 SAMEA3649026 42727_B01 Complete Genome 2016-02-10T08:07:43.286 United Kingdom: Reading Pre-filter water works SC 100.0x 99.99 99.75 0.52 100 0.19 GCF_900475215.1 5976 6173 6173 108 19 69 1 Pseudomonas_fluorescens_homd_HMT_612 GCA_900475225.1 HMT-755 NCTC7366 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius NCTC7366 1 2184782 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/225/GCA_900475225.1_42685_C01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_D PRJEB6403 1304 SAMEA3649030 42685_C01 Complete Genome 2016-02-10T08:07:43.436 United Kingdom: London not available: to be reported later SC 100.0x 95.93 99.94 0.15 100 0.16 GCF_900475225.1 1986 2110 2110 37 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_900475275.1 HMT-758 NCTC11086 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis NCTC11086 1 2331387 43.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/275/GCA_900475275.1_42685_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_N PRJEB6403 1305 SAMEA3649033 42685_F01 Complete Genome 2016-02-10T08:07:43.623 Norway: Oslo throat SC 100.0x 95.12 100 0 99.99 0.15 GCF_900475275.1 2199 2366 2366 93 12 61 1 Streptococcus_sanguinis_homd_HMT_758 GCA_900475315.1 HMT-956 NCTC10294 Named Cultivated Oral (Abundance: High) HMT-956 Neisseria cinerea NCTC10294 1 1832904 50.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/315/GCA_900475315.1_43721_G02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria cinerea PRJEB6403 483 SAMEA3714889 43721_G02 Complete Genome 2016-04-09T15:13:21.560 Germany nasopharynx SC 100.0x 99.99 98.06 0 100 0 GCF_900475315.1 1713 1811 1811 25 12 60 1 Neisseria_cinerea_homd_HMT_956 GCA_900475365.1 HMT-768 NCTC10921 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus NCTC10921 1 2145110 43.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/365/GCA_900475365.1_43908_G01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJEB6403 1310 SAMEA3729941 43908_G01 Complete Genome 2016-04-13T08:09:02.190 United Kingdom: London not available: to be reported later SC 100.0x 98.92 98.88 0.37 99.98 0.1 GCF_900475365.1 1968 2085 2085 35 18 63 1 Streptococcus_sobrinus_homd_HMT_768 GCA_900475385.1 HMT-622 NCTC3165 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii NCTC3165 1 2154796 40.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/385/GCA_900475385.1_43597_G01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJEB6403 1302 SAMEA3714881 43597_G01 Complete Genome 2016-04-02T16:29:40.676 not available: to be reported later SC 100.0x 95.56 100 0 100 0.09 GCF_900475385.1 2055 2152 2152 25 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_900475395.1 HMT-768 NCTC12279 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus NCTC12279 1 2198648 43.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/395/GCA_900475395.1_43908_H01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJEB6403 1310 SAMEA3729942 43908_H01 Complete Genome 2016-04-13T08:09:02.516 not available: to be reported later SC 100.0x 99.98 98.88 0 99.99 0.13 GCF_900475395.1 2049 2170 2170 35 18 67 1 Streptococcus_sobrinus_homd_HMT_768 GCA_900475445.1 HMT-578 NCTC12479 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus NCTC12479 1 2000351 42.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/445/GCA_900475445.1_42727_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus PRJEB6403 889201 SAMEA3649037 42727_F01 Complete Genome 2016-02-10T08:07:43.810 Oral Cavity SC 100.0x 99.98 100 0 99.98 0.03 GCF_900475445.1 1890 1997 1997 36 12 58 1 Streptococcus_cristatus_homd_HMT_578 GCA_900475505.1 HMT-758 NCTC7863 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis NCTC7863 1 2296927 43.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/505/GCA_900475505.1_42925_G01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis PRJEB6403 1305 SAMEA3672886 42925_G01 Complete Genome 2016-02-22T12:05:55.616 not available: to be reported later SC 100.0x 99.97 100 0 99.96 0.06 GCF_900475505.1 2178 2278 2278 28 12 59 1 Streptococcus_sanguinis_homd_HMT_758 GCA_900475515.1 HMT-734 NCTC13276 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae NCTC13276 1 2039982 39.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/515/GCA_900475515.1_42731_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJEB6403 1313 SAMEA3649044 42731_F01 Complete Genome 2016-02-10T08:07:44.266 not available: to be reported later SC 100.0x 98.76 99.6 0.21 100 0.08 GCF_900475515.1 1992 2142 2142 79 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_900475535.1 HMT-641 NCTC11931 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC11931 1 2044007 38.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/535/GCA_900475535.1_44310_E01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJEB6403 727 SAMEA3867450 44310_E01 Complete Genome 2016-04-27T09:12:14.980 United Kingdom: Cambridge not available: to be reported later SC 100.0x 95.28 99.56 0.44 100 0.03 GCF_900475535.1 2020 2137 2137 37 19 60 1 Haemophilus_influenzae_homd_HMT_641 GCA_900475555.1 HMT-087 NCTC2665 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-087 Micrococcus luteus NCTC2665 1 2495693 73.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/555/GCA_900475555.1_44257_B01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus;s__Micrococcus luteus PRJEB6403 465515 SAMEA3867442 44257_B01 Complete Genome 2016-04-27T09:12:14.380 United Kingdom: London not available: to be reported later SC 100.0x 99.98 98.7 0 100 0.04 GCF_900475555.1 2278 2350 2350 12 6 53 1 Micrococcus_luteus_homd_HMT_087 GCA_900475625.1 HMT-558 NCTC13768 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-558 Levilactobacillus brevis NCTC13768 1 2494328 46.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/625/GCA_900475625.1_45709_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis PRJEB6403 1580 SAMEA3919799 45709_F01 Complete Genome 2016-06-22T09:10:36.613 not available: to be reported later SC 100.0x 99.99 99.06 0.16 99.99 0.1 GCF_900475625.1 2423 2534 2534 30 15 65 1 Levilactobacillus_brevis_homd_HMT_558 GCA_900475755.1 HMT-641 NCTC11426 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC11426 1 1834484 38.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/755/GCA_900475755.1_45214_B02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJEB6403 727 SAMEA3893456 45214_B02 Complete Genome 2016-06-02T09:09:27.736 not available: to be reported later SC 100.0x 95.33 99.66 0.23 100 0.3 GCF_900475755.1 1701 1810 1810 31 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_900475805.1 HMT-734 NCTC11902 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae NCTC11902 1 2093242 39.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/805/GCA_900475805.1_46514_B03 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJEB6403 1313 SAMEA3956100 46514_B03 Complete Genome 2016-07-27T09:07:20.530 not available: to be reported later SC 100.0x 98.81 99.18 0.21 100 0.16 GCF_900475805.1 2061 2210 2210 78 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_900475815.1 HMT-598 NCTC11050 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata NCTC11050 1 2249415 54.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/815/GCA_900475815.1_46758_G01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJEB6403 88719 SAMEA53328418 46758_G01 Complete Genome 2017-02-01T09:06:49.126 Norway: Oslo throat swab SC 100.0x 99.99 99.9 0.23 99.99 0.17 GCF_900475815.1 2142 2234 2234 17 12 62 1 Neisseria_elongata_homd_HMT_598 GCA_900475885.1 HMT-535 NCTC8502 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius NCTC8502 1 1993258 38.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/885/GCA_900475885.1_49595_C01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB6403 197575 SAMEA4076725 49595_C01 Complete Genome 2016-12-21T09:11:36.523 USA: Maryland not available: to be reported later SC 100.0x 99.99 99.56 0 99.99 0.06 GCF_900475885.1 1970 2089 2089 43 19 56 1 Haemophilus_aegyptius_homd_HMT_535 GCA_900475905.1 HMT-646 NCTC10529 Named Cultivated Oral (Abundance: Scarce) HMT-646 Kingella kingae NCTC10529 1 2006553 46.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/905/GCA_900475905.1_49595_E01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella;s__Kingella kingae PRJEB6403 504 SAMEA4076727 49595_E01 Complete Genome 2016-12-21T09:11:36.710 Nose SC 100.0x 99.99 98.87 0.23 100 0.07 GCF_900475905.1 2035 2113 2113 11 12 54 1 Kingella_kingae_homd_HMT_646 GCA_900475915.1 HMT-811 NCTC8452 Named Cultivated Opportunistic Pathogen (Abundance: Scarce) HMT-811 Arcanobacterium haemolyticum NCTC8452 1 1988850 53.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/915/GCA_900475915.1_48128_H02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Arcanobacterium;s__Arcanobacterium haemolyticum PRJEB6403 28264 SAMEA4030753 48128_H02 Complete Genome 2016-09-28T17:32:50.083 not available: to be reported later SC 100.0x 99.99 97.99 0 100 0.11 GCF_900475915.1 1827 1899 1899 8 12 51 1 Arcanobacterium_haemolyticum_homd_HMT_811 GCA_900475975.1 HMT-644 NCTC11324 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius NCTC11324 1 1932951 37.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/975/GCA_900475975.1_46931_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB6403 1338 SAMEA4012327 46931_F01 Complete Genome 2016-08-10T09:11:33.316 France: Paris not available: to be reported later SC 100.0x 99.99 100 0 100 0.21 GCF_900475975.1 1839 1945 1945 32 12 61 1 Streptococcus_intermedius_homd_HMT_644 GCA_900475995.1 HMT-641 NCTC12975 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC12975 1 1850791 38.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/475/995/GCA_900475995.1_47555_F02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB6403 727 SAMEA4030739 47555_F02 Complete Genome 2016-09-28T17:32:49.190 not available: to be reported later SC 100.0x 97.81 99.77 0.23 100 0 GCF_900475995.1 1736 1848 1848 33 19 59 1 Haemophilus_influenzae_homd_HMT_641 GCA_900476035.1 HMT-762 NCTC10977 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis NCTC10977 1 2022832 42.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/476/035/GCA_900476035.1_53694_C01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis PRJEB6403 888057 SAMEA87357418 53694_C01 Complete Genome 2017-09-20T08:06:36.576 Denmark: Aarhus Dental Plaque SC 100.0x 99.99 99.89 0 100 0 GCF_900476035.1 1880 1995 1995 37 19 58 1 Aggregatibacter_segnis_homd_HMT_762 GCA_900476045.1 HMT-046 NCTC11323 Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum NCTC11323 1 1760930 30.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/476/045/GCA_900476045.1_50279_D01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJEB6403 29391 SAMEA4364208 50279_D01 Complete Genome 2017-01-12T16:14:18.393 Lung Abscess SC 100.0x 99.99 98.56 0 100 0.15 GCF_900476045.1 1657 1736 1736 24 12 42 1 Gemella_morbillorum_homd_HMT_046 GCA_900476055.1 HMT-073 NCTC13166 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis NCTC13166 1 2161464 41.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/476/055/GCA_900476055.1_53750_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus australis PRJEB6403 113107 SAMEA103899862 53750_F01 Complete Genome 2017-09-20T08:06:37.506 not available: to be reported later SC 100.0x 99.98 99.66 0 100 0.02 GCF_900476055.1 1994 2104 2104 35 12 62 1 Streptococcus_australis_homd_HMT_073 GCA_900476075.1 HMT-833 NCTC11020 Named Cultivated Nasal (Abundance: Medium) HMT-833 Moraxella catarrhalis NCTC11020 1 1907984 41.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/476/075/GCA_900476075.1_49595_F01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella;s__Moraxella catarrhalis PRJEB6403 480 SAMEA4076728 49595_F01 Complete Genome 2016-12-21T09:11:36.843 not available: to be reported later SC 100.0x 99.99 99.73 0.27 100 0.01 GCF_900476075.1 1704 1777 1777 10 12 50 1 Moraxella_catarrhalis_homd_HMT_833 GCA_900476475.1 HMT-734 4041STDY6583227 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 4041STDY6583227 1 2157682 39.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/476/475/GCA_900476475.1_49768_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJEB20737 1313 SAMEA4469815 49768_F01 Complete Genome 2017-10-06T08:06:31.783 South Africa blood SC 100.0x 98.79 99.6 0.21 100 0.14 GCF_900476475.1 2126 2280 2280 83 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_900476505.1 HMT-734 4041STDY6836166 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 4041STDY6836166 1 2200529 39.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/476/505/GCA_900476505.1_55312_C02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJEB20737 1313 SAMEA104042952 55312_C02 Complete Genome 2017-10-06T08:06:31.826 South Africa blood SC 100.0x 98.51 99.42 0.7 100 0.39 GCF_900476505.1 2179 2324 2324 74 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_900477945.1 HMT-851 NCTC10839 Named Cultivated Oral (Abundance: High) HMT-851 Haemophilus haemolyticus NCTC10839 1 1934644 38.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/477/945/GCA_900477945.1_45473_H02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus PRJEB6403 726 SAMEA3905387 45473_H02 Complete Genome 2016-06-15T09:07:31.013 Denmark: Aarhus nasopharynx SC 311.0x 95.7 99.66 0.06 100 0.02 GCF_900477945.1 1782 1916 1916 54 19 60 1 Haemophilus_haemolyticus_homd_HMT_851 GCA_900477975.1 HMT-047 NCTC11914 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-047 Corynebacterium jeikeium NCTC11914 1 2414649 61.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/477/975/GCA_900477975.1_46983_G01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium jeikeium PRJEB6403 38289 SAMEA4017709 46983_G01 Complete Genome 2016-08-17T12:12:16.440 United Kingdom: London blood SC 380.0x 96.96 100 0.68 99.93 0.33 GCF_900477975.1 2057 2123 0 6 9 50 1 Corynebacterium_jeikeium_homd_HMT_047 GCA_900478045.1 HMT-053 NCTC10288 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-053 Corynebacterium minutissimum NCTC10288 1 2695970 59.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/478/045/GCA_900478045.1_47555_C02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium minutissimum PRJEB6403 38301 SAMEA4030732 47555_C02 Complete Genome 2016-09-28T17:32:48.690 United Kingdom: London not available: to be reported later SC 111.0x 99.99 99.78 0 99.99 0.05 GCF_900478045.1 2466 2539 2539 8 12 51 2 Corynebacterium_minutissimum_homd_HMT_053 GCA_900478185.1 HMT-578 NCTC13807 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus NCTC13807 1 2176084 42.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/478/185/GCA_900478185.1_51342_H01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_B PRJEB6403 45634 SAMEA44545168 51342_H01 Complete Genome 2017-03-16T17:07:37.040 China: Beijing Dental Plaque (Non carious) SC 516.0x 99.95 99.63 0 100 0.06 GCF_900478185.1 2103 2209 2209 35 12 58 1 Streptococcus_cristatus_homd_HMT_578 GCA_900478255.1 HMT-128 NCTC12217 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-128 Staphylococcus lugdunensis NCTC12217 1 2540333 33.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/478/255/GCA_900478255.1_34211_E02 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus lugdunensis PRJEB6403 28035 SAMEA3221102 34211_E02 Complete Genome 2015-03-18T08:09:22.030 not available: to be reported later SC 209.0x 99.95 99.61 0 100 0.08 GCF_900478255.1 2346 2505 2505 83 16 59 1 Staphylococcus_lugdunensis_homd_HMT_128 GCA_900478265.1 HMT-545 NCTC11096 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus NCTC11096 1 2290909 42.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/478/265/GCA_900478265.1_33962_C02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJEB6403 732 SAMEA3207622 33962_C02 Complete Genome 2015-02-25T11:25:13.973 Blood culture SC 221.0x 98.1 99.66 0.02 100 0.12 GCF_900478265.1 2106 2238 2238 53 19 59 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_900478275.1 HMT-641 NCTC13377 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC13377 1 1890469 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/478/275/GCA_900478275.1_34211_D02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB6403 727 SAMEA3221101 34211_D02 Complete Genome 2015-03-18T08:09:21.996 not available: to be reported later SC 299.0x 97.32 99.67 0 100 0.77 GCF_900478275.1 1793 1907 1907 36 20 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_900478295.1 HMT-812 NCTC 11637 Named Cultivated Gastrointestinal Tract (Abundance: Low) HMT-812 Helicobacter pylori NCTC 11637 1 1680937 38.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/478/295/GCA_900478295.1_35377_D02 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori PRJEB6403 102618 SAMEA3178013 35377_D02 Complete Genome 2015-02-25T11:25:12.216 Australia Gastric Antrum SC 379.0x 99.99 99.36 0 99.99 0.04 GCF_900478295.1 1603 1662 1662 18 4 36 1 Helicobacter_pylori_homd_HMT_812 GCA_900478325.1 HMT-641 NCTC12194 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC12194 1 1915356 38.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/478/325/GCA_900478325.1_33962_G01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB6403 727 SAMEA3207620 33962_G01 Complete Genome 2015-02-25T11:25:13.790 Denmark nasopharynx SC 180.0x 98.05 99.77 0 100 0 GCF_900478325.1 1865 1979 1979 34 19 60 1 Haemophilus_influenzae_homd_HMT_641 GCA_900478415.1 HMT-331 NCTC12101 Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis NCTC12101 1 2216666 37.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/478/415/GCA_900478415.1_35910_E02 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJEB6403 29379 SAMEA3233547 35910_E02 Complete Genome 2015-05-13T13:09:23.930 not available: to be reported later SC 233.0x 99.99 99.45 0 99.98 0.04 GCF_900478415.1 2125 2244 2244 42 16 60 1 Staphylococcus_auricularis_homd_HMT_331 GCA_900478735.1 HMT-641 NCTC8455 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC8455 1 1865137 38.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/478/735/GCA_900478735.1_33763_D01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJEB6403 727 SAMEA2822163 33763_D01 Complete Genome 2015-02-18T13:06:16.446 not available: to be reported later SC 235.0x 95.24 99.43 0.35 100 0.27 GCF_900478735.1 1749 1854 1854 30 19 55 1 Haemophilus_influenzae_homd_HMT_641 GCA_900490715.1 HMT-644 G1552 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1552 14 1942413 37.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/715/GCA_900490715.1_G1552 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733581 G1552 Contig 2018-08-19T08:05:53.660 Abdominal abscess URMITE 12.0x 98.37 100 0 100 0.25 GCF_900490715.1 UENJ01 1876 1965 1965 35 3 50 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490725.1 HMT-644 G1565 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1565 17 1972424 37.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/725/GCA_900490725.1_G1565 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733590 G1565 Contig 2018-08-19T08:05:53.860 brain abscess URMITE 12.0x 98.37 100 0 100 0.29 GCF_900490725.1 UENG01 1897 1983 1983 33 3 49 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490735.1 HMT-644 G1563 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1563 14 1890941 37.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/735/GCA_900490735.1_G1563 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733588 G1563 Contig 2018-08-19T08:05:53.820 brain abscess URMITE 12.0x 98.27 99.88 0 100 0.24 GCF_900490735.1 UEND01 1809 1897 1897 35 4 48 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490745.1 HMT-644 G1557 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1557 14 1900046 37.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/745/GCA_900490745.1_G1557 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733586 G1557 Contig 2018-08-19T08:05:53.776 Abdominal abscess URMITE 12.0x 98.34 100 0 100 0.18 GCF_900490745.1 UENH01 1829 1927 1927 36 4 57 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490765.1 HMT-644 G1567 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1567 13 1897330 37.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/765/GCA_900490765.1_G1567 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733592 G1567 Contig 2018-08-19T08:05:53.896 brain abscess URMITE 12.0x 98.51 100 0 100 0.24 GCF_900490765.1 UENA01 1845 1934 1934 34 4 50 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490785.1 HMT-644 G1562 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1562 21 2052377 37.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/785/GCA_900490785.1_G1562 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733587 G1562 Contig 2018-08-19T08:05:53.803 brain abscess URMITE 12.0x 98.54 99.88 0.35 100 0.31 GCF_900490785.1 UENI01 1943 2032 2032 36 4 48 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490795.1 HMT-644 G1554 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1554 38 1886668 37.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/795/GCA_900490795.1_G1554 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733583 G1554 Contig 2018-08-19T08:05:53.706 Broncho-pulmonary abscess URMITE 12.0x 98.26 99.7 0.15 99.99 0.27 GCF_900490795.1 UENC01 1766 1859 1859 34 4 54 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490805.1 HMT-644 G1555 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1555 25 2003390 37.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/805/GCA_900490805.1_G1555 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733584 G1555 Contig 2018-08-19T08:05:53.730 Bone abscess URMITE 12.0x 98.37 100 0 100 0.07 GCF_900490805.1 UENE01 1963 2059 2059 37 4 54 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490815.1 HMT-644 G1564 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1564 125 1887926 37.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/815/GCA_900490815.1_G1564 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733589 G1564 Contig 2018-08-19T08:05:53.840 brain abscess URMITE 12.0x 98.27 99.47 0.66 99.98 0.5 GCF_900490815.1 UENF01 1786 1875 1875 35 3 50 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490835.1 HMT-644 G1568 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1568 14 1898090 37.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/835/GCA_900490835.1_G1568 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733593 G1568 Contig 2018-08-19T08:05:53.913 brain abscess URMITE 12.0x 98.51 100 0 100 0.24 GCF_900490835.1 UENB01 1846 1936 1936 34 5 50 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490855.1 HMT-644 G1566 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1566 10 1897154 37.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/855/GCA_900490855.1_G1566 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733591 G1566 Contig 2018-08-19T08:05:53.880 brain abscess URMITE 12.0x 98.51 100 0 100 0.24 GCF_900490855.1 UICY01 1846 1938 1938 34 4 53 1 Streptococcus_intermedius_homd_HMT_644 GCA_900490865.1 HMT-644 G1556 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1556 14 1850828 37.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/490/865/GCA_900490865.1_G1556 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA4733585 G1556 Contig 2018-08-19T08:05:53.753 Abdominal abscess URMITE 12.0x 98.41 99.88 0 100 0.29 GCF_900490865.1 UENK01 1800 1896 1896 33 6 56 1 Streptococcus_intermedius_homd_HMT_644 GCA_900497565.1 HMT-725 Marseille-2-CSURP6642 Named Cultivated Oral (Abundance: Scarce) HMT-725 Treponema pectinovorum Marseille-2-CSURP6642 119 2222979 36.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/497/565/GCA_900497565.1_PRJEB27758 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D pectinovorum PRJEB27758 164 SAMEA4788777 PRJEB27758 Contig 2019-08-08T08:06:46.873 saliva URMITE 200.0x 98.95 0.23 97.19 0.19 GCF_900497565.1 UFQJ01 1862 1913 1913 3 5 42 1 Treponema_pectinovorum_homd_HMT_725 GCA_900497585.1 HMT-725 Marseille-4-CSURP7639 Named Cultivated Oral (Abundance: Scarce) HMT-725 Treponema pectinovorum Marseille-4-CSURP7639 62 2140854 37.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/497/585/GCA_900497585.1_PRJEB27761 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D pectinovorum PRJEB27761 164 SAMEA4789891 PRJEB27761 Contig 2019-08-08T08:06:47.170 saliva URMITE 6.0x 96.5 0.7 91.86 0.06 GCF_900497585.1 UFQN01 1767 1816 1816 3 6 39 1 Treponema_pectinovorum_homd_HMT_725 GCA_900497595.1 HMT-725 Marseille-3-CSURP7641 Named Cultivated Oral (Abundance: Scarce) HMT-725 Treponema pectinovorum Marseille-3-CSURP7641 10 2224027 37.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/497/595/GCA_900497595.1_PRJEB27760 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D pectinovorum PRJEB27760 164 SAMEA4789890 PRJEB27760 Contig 2019-08-08T08:06:47.140 saliva URMITE 10.0x 98.95 0 98.85 0.09 GCF_900497595.1 UFQO01 1880 1930 1930 3 5 41 1 Treponema_pectinovorum_homd_HMT_725 GCA_900497605.1 HMT-584 Marseille-5-CSURP7640 Named Cultivated Oral (Abundance: Medium) HMT-584 Treponema denticola Marseille-5-CSURP7640 46 2795521 38.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/497/605/GCA_900497605.1_PRJEB27762 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B;s__Treponema_B denticola PRJEB27762 158 SAMEA4789892 PRJEB27762 Contig 2019-08-08T08:06:47.453 saliva URMITE 16.0x 97.38 100 0 99.51 0.25 GCF_900497605.1 UFQP01 2583 2643 2643 11 5 43 1 Treponema_denticola_homd_HMT_584 GCA_900538345.1 HMT-421 UMGS9 Named Cultivated Oral (Abundance: Medium) HMT-421 Veillonella tobetsuensis UMGS9 15 1971073 38.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/538/345/GCA_900538345.1_UMGS9 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella tobetsuensis PRJEB26432 159268 SAMEA4890718 UMGS9 Contig 2019-01-28T10:00:36.926 human gut EBI 53.0x 100 0 100 0.11 GCF_900538345.1 UPYA01 1804 1867 1867 18 0 44 1 Veillonella_tobetsuensis_homd_HMT_421 GCA_900538375.1 HMT-158 UMGS16 Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae UMGS16 19 2094981 39.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/538/375/GCA_900538375.1_UMGS16 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJEB26432 159268 SAMEA4890724 UMGS16 Contig 2019-01-28T10:00:39.846 human gut EBI 66.0x 100 0 99.98 0.15 GCF_900538375.1 UWSM01 1888 1957 1957 23 2 43 1 Veillonella_rogosae_homd_HMT_158 GCA_900538825.1 HMT-784 UMGS62 Named Cultivated Nasal (Abundance: High) HMT-784 Peptoniphilus lacydonensis UMGS62 12 1622414 29.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/538/825/GCA_900538825.1_UMGS62 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacydonensis PRJEB26432 254354 SAMEA4890764 UMGS62 Contig 2019-01-28T10:01:02.766 human gut EBI 178.0x 98.95 0 99.83 0.22 GCF_900538825.1 UPZR01 1553 1603 1603 26 1 22 1 Peptoniphilus_lacydonensis_homd_HMT_784 GCA_900539075.1 HMT-187 UMGS92 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-187 Peptoniphilus grossensis UMGS92 83 1753032 34.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/539/075/GCA_900539075.1_UMGS92 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A grossensis PRJEB26432 254354 SAMEA4890791 UMGS92 Contig 2019-01-28T10:01:17.643 human gut EBI 2.0x 98.6 0 98.72 0.36 GCF_900539075.1 UQAS01 1655 1701 1701 28 1 16 1 Peptoniphilus_grossensis_homd_HMT_187 GCA_900542205.1 HMT-837 UMGS437 Named Cultivated Vaginal (Abundance: Medium) HMT-837 Sneathia sanguinegens UMGS437 80 1366678 26.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/542/205/GCA_900542205.1_UMGS437 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia;s__Sneathia sanguinegens PRJEB26432 278067 SAMEA4891104 UMGS437 Contig 2019-01-28T10:04:07.816 human gut EBI 15.0x 97.19 0.56 93.38 1.25 GCF_900542205.1 UQMS01 1332 1363 1363 8 0 22 1 Sneathia_sanguinegens_homd_HMT_837 GCA_900543065.1 HMT-948 UMGS525 Named Cultivated Oral (Abundance: Scarce) HMT-948 Streptococcus lactarius UMGS525 77 1794265 41.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/543/065/GCA_900543065.1_UMGS525 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus lactarius PRJEB26432 83427 SAMEA4891189 UMGS525 Contig 2019-02-08T12:13:06.540 human gut EBI 16.0x 94.86 0.29 90.11 0.06 GCF_900543065.1 UQPW01 1700 1762 1762 45 0 16 1 Streptococcus_lactarius_homd_HMT_948 GCA_900543655.1 HMT-792 UMGS594 Named Cultivated Skin (Abundance: Medium) HMT-792 Anaerococcus nagyae UMGS594 47 1745397 30.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/543/655/GCA_900543655.1_UMGS594 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus nagyae PRJEB26432 293428 SAMEA4891250 UMGS594 Contig 2019-02-08T12:13:07.070 human gut EBI 201.0x 98.74 1.22 95.09 1.61 GCF_900543655.1 UQSN01 1620 1676 1676 25 3 27 1 Anaerococcus_nagyae_homd_HMT_792 GCA_900549615.1 HMT-794 UMGS1208 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-794 Hallella multisaccharivorax UMGS1208 99 2858581 48.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/549/615/GCA_900549615.1_UMGS1208 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella multisaccharivorax PRJEB26432 159272 SAMEA4891846 UMGS1208 Contig 2019-01-28T10:10:34.703 human gut EBI 11.0x 90.51 1.75 88.72 0.59 UROW01 2429 2467 2467 11 0 27 0 Hallella_multisaccharivorax_homd_HMT_794 GCA_900566195.1 HMT-725 Marseille-1-CSURP6641 Named Cultivated Oral (Abundance: Scarce) HMT-725 Treponema pectinovorum Marseille-1-CSURP6641 12 2246732 36.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/566/195/GCA_900566195.1_PRJEB27756 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D pectinovorum PRJEB27756 164 SAMEA4788772 PRJEB27756 Scaffold 2019-08-07T09:10:55.480 saliva URMITE 12.0x 98.95 0.7 98.71 0.23 GCF_900566195.1 UOUI01 1869 1922 1922 4 6 42 1 Treponema_pectinovorum_homd_HMT_725 GCA_900573895.1 HMT-725 ATCC 700769 Named Cultivated Oral (Abundance: Scarce) HMT-725 Treponema pectinovorum ATCC 700769 6 2319274 36.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/573/895/GCA_900573895.1_PRJEB29053 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D pectinovorum PRJEB29053 164 SAMEA4955080 PRJEB29053 Contig 2019-08-07T09:11:05.590 Oral cavity URMITE 11.0x 98.95 0.7 98.94 0.01 GCF_900573895.1 UPSF01 2004 2055 2055 3 5 42 1 Treponema_pectinovorum_homd_HMT_725 GCA_900573925.1 HMT-763 B32_SW Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae B32_SW 2 2308370 44.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/573/925/GCA_900573925.1_B32_SW d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae_A PRJEB17707 204 SAMEA4535846 B32_SW Contig 2018-09-29T14:06:48.300 United Kingdom Biopsy Univeristy of Aberdeen 497.0x 92.28 99.88 1.12 99.97 0.41 GCF_900573925.1 UWOL01 2303 2364 2364 5 6 49 1 Campylobacter_showae_homd_HMT_763 GCA_900573945.1 HMT-763 B91_SCBr Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae B91_SCBr 4 2138501 46.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/573/945/GCA_900573945.1_B91_SCBr d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae_D PRJEB17707 204 SAMEA4535848 B91_SCBr Scaffold 2018-09-29T14:06:48.363 United Kingdom Biopsy Univeristy of Aberdeen 104.0x 92.05 99.88 0.37 99.97 0.5 GCF_900573945.1 UWOI01 2053 2104 2104 5 2 43 1 Campylobacter_showae_homd_HMT_763 GCA_900573955.1 HMT-763 B91_TPP Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae B91_TPP 6 2149118 46.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/573/955/GCA_900573955.1_B91_TPP d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae_D PRJEB17707 204 SAMEA4535849 B91_TPP Scaffold 2018-09-29T14:06:48.380 United Kingdom Biopsy Univeristy of Aberdeen 75.0x 92.07 99.88 0.37 99.92 0.42 GCF_900573955.1 UWOJ01 2052 2105 2105 5 4 43 1 Campylobacter_showae_homd_HMT_763 GCA_900573975.1 HMT-763 129_VTPPs Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae 129_VTPPs 2 2240249 45.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/573/975/GCA_900573975.1_129_VTPPs d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae_A PRJEB17707 204 SAMEA4535852 129_VTPPs Scaffold 2018-09-29T14:06:48.456 United Kingdom Biopsy Univeristy of Aberdeen 59.0x 92.28 99.88 0.69 99.95 0.58 GCF_900573975.1 UWON01 2224 2275 2275 5 2 43 1 Campylobacter_showae_homd_HMT_763 GCA_900573985.1 HMT-763 CAM Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae CAM 3 2502981 44.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/573/985/GCA_900573985.1_CAM d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae_E PRJEB17707 204 SAMEA4960295 CAM Contig 2018-10-08T11:46:48.610 Univeristy of Aberdeen 817.0x 93.06 99.13 1.69 99.95 0.62 GCF_900573985.1 UWOK01 2395 2454 2454 5 6 47 1 Campylobacter_showae_homd_HMT_763 GCA_900573995.1 HMT-763 129_MSG Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae 129_MSG 4 2243050 44.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/573/995/GCA_900573995.1_129_MSG d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae_A PRJEB17707 204 SAMEA4535850 129_MSG Contig 2018-09-29T14:06:48.410 United Kingdom Biopsy Univeristy of Aberdeen 708.0x 92.28 99.69 0.69 99.95 0.85 GCF_900573995.1 UWOO01 2225 2284 2284 5 6 47 1 Campylobacter_showae_homd_HMT_763 GCA_900604505.1 HMT-193 Marseille-P5998 Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum Marseille-P5998 12 2619414 59.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/604/505/GCA_900604505.1_PRJEB25865 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJEB25865 2559073 SAMEA4983402 PRJEB25865 Contig 2018-10-25T15:25:19.120 vagina URMITE 50.0x 99.72 100 0 100 0.36 GCF_900604505.1 UWOQ01 2551 2626 2626 24 3 47 1 Cutibacterium_modestum_homd_HMT_193 GCA_900610365.2 HMT-173 USB-603019 Named Cultivated Nasal (Abundance: Medium) HMT-173 Lawsonella clevelandensis USB-603019 1 1877010 58.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/610/365/GCA_900610365.2_603019-18 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Lawsonella;s__Lawsonella clevelandensis PRJEB29478 1528099 SAMEA5065507 603019-18 Chromosome 2019-08-16T15:05:49.963 Switzerland abscess breast University Hospital Basel 254.0x 99.61 GCF_900610365.1 1609 1668 1668 6 6 46 1 Lawsonella_clevelandensis_homd_HMT_173 GCA_900618145.1 HMT-700 NCTC11458 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea NCTC11458 2 2694690 39.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/618/145/GCA_900618145.1_NCTC11458 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJEB6403 1018 SAMEA104210766 NCTC11458 Contig 2017-12-20T09:06:10.560 United Kingdom: Worcester SC 100.0x 96.47 100 0.48 99.99 0.01 GCF_900618145.1 UYIQ01 2270 2343 2343 8 15 49 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_900618555.1 HMT-734 947 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 947 1 2109624 39.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/618/555/GCA_900618555.1_947 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJEB29727 1313 SAMEA5092021 947 Complete Genome 2019-01-02T08:20:26.213 Australia ear Bioplatforms Australia 50.0x 98.67 99.81 0.21 100 0.13 GCF_900618555.1 2057 2204 2204 76 12 58 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_900626155.1 HMT-294 Marseille-P4512 Named** Cultivated Vaginal (Abundance: Scarce) HMT-294 Anaerococcus vaginimassiliensis Marseille-P4512 1 1836452 33.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/626/155/GCA_900626155.1_PRJEB22908 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus vaginimassiliensis PRJEB22908 2042308 SAMEA5138500 PRJEB22908 Scaffold 2018-12-02T13:11:55.210 vagina URMITE 53.0x 99.39 0 99.1 0.3 GCF_900626155.1 UZAS01 1761 0 0 28 13 49 1 Anaerococcus_vaginimassiliensis_homd_HMT_294 GCA_900626305.1 HMT-644 G1553 Named Cultivated Oral (Abundance: Medium) HMT-644 Streptococcus intermedius G1553 16 1974260 37.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/626/305/GCA_900626305.1_PRJEB27335_G1553 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus intermedius PRJEB27335 862967 SAMEA5142602 PRJEB27335_G1553 Contig 2018-12-02T13:11:55.286 Abdominal abscess URMITE 12.0x 98.35 99.88 0 99.99 0.25 GCF_900626305.1 UZBH01 1899 1996 1996 36 4 56 1 Streptococcus_intermedius_homd_HMT_644 GCA_900635155.1 HMT-758 NCTC 10904 Named Cultivated Oral (Abundance: High) HMT-758 Streptococcus sanguinis NCTC 10904 1 2360223 43.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/635/155/GCA_900635155.1_36725_F02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis_G PRJEB6403 1305 SAMEA3307890 36725_F02 Complete Genome 2015-06-10T08:09:19.016 United Kingdom Dental Plaque SC 100.0x 94.14 100 0 99.97 0.12 GCF_900635155.1 2234 2335 2335 28 12 60 1 Streptococcus_sanguinis_homd_HMT_758 GCA_900635435.1 HMT-153 NCTC10006 Named Cultivated Nasal (Abundance: Medium) HMT-153 Klebsiella aerogenes NCTC10006 13 5265473 54.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/635/435/GCA_900635435.1_28021_A02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella;s__Klebsiella aerogenes PRJEB6403 548 SAMEA2548136 28021_A02 Complete Genome 2014-08-21T08:06:49.530 not available: to be reported later SC 100.0x 99.94 97.44 0.1 95.13 2.55 GCF_900635435.1 5693 5946 5946 132 29 91 1 Klebsiella_aerogenes_homd_HMT_153 GCA_900635715.1 HMT-827 NCTC8480 Named Cultivated Pathogen (Abundance: Scarce) HMT-827 Yersinia pestis NCTC8480 1 4678752 47.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/635/715/GCA_900635715.1_32473_H02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;s__Yersinia pestis PRJEB6403 633 SAMEA2689764 32473_H02 Complete Genome 2014-11-26T08:05:34.693 not available: to be reported later SC 100.0x 99.6 99.87 0.78 100 0.2 GCF_900635715.1 3997 4306 4306 199 22 87 1 Yersinia_pestis_homd_HMT_827 GCA_900635795.1 HMT-641 NCTC11394 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC11394 1 1860106 38.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/635/795/GCA_900635795.1_33962_B02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB6403 727 SAMEA3207623 33962_B02 Complete Genome 2015-02-25T11:25:14.046 not available: to be reported later SC 100.0x 97.37 99.45 0 100 0.75 GCF_900635795.1 1760 1874 1874 36 20 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_900635805.1 HMT-641 NCTC12699 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC12699 1 1879945 38.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/635/805/GCA_900635805.1_34211_C02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_E PRJEB6403 727 SAMEA3221100 34211_C02 Complete Genome 2015-03-18T08:09:21.913 not available: to be reported later SC 100.0x 97.1 99.67 0 100 0.05 GCF_900635805.1 1762 1881 1881 42 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_900636255.1 HMT-076 NCTC4133 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NCTC4133 1 2430678 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/255/GCA_900636255.1_40295_A02 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJEB6403 1292 SAMEA3505359 40295_A02 Complete Genome 2015-10-07T11:07:11.030 USA: Chicago Sponge Cake SC 100.0x 99.31 99.73 0 100 0.07 GCF_900636255.1 2260 2388 2388 46 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_900636265.1 HMT-076 NCTC7291 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NCTC7291 1 2451975 32.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/265/GCA_900636265.1_40295_B02 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJEB6403 1292 SAMEA3505360 40295_B02 Complete Genome 2015-10-07T11:07:11.106 skin SC 100.0x 99.7 99.62 0 100 0.06 GCF_900636265.1 2324 2451 2451 45 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_900636385.1 HMT-076 NCTC11044 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri NCTC11044 1 2427576 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/385/GCA_900636385.1_41665_E01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJEB6403 1292 SAMEA3539706 41665_E01 Complete Genome 2015-12-09T08:06:58.656 skin SC 100.0x 99.99 99.03 0 99.98 0.17 GCF_900636385.1 2322 2451 2451 47 19 62 1 Staphylococcus_warneri_homd_HMT_076 GCA_900636435.1 HMT-755 NCTC8618 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius NCTC8618 1 2206150 40.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/435/GCA_900636435.1_42197_C01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJEB6403 1304 SAMEA3614264 42197_C01 Complete Genome 2016-01-20T08:08:18.796 not available: to be reported later SC 100.0x 99.99 99.46 0.15 99.99 0.03 GCF_900636435.1 2001 2120 2120 32 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_900636445.1 HMT-021 NCTC12167 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis NCTC12167 1 1950305 39.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/445/GCA_900636445.1_41965_G01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJEB6403 1343 SAMEA3594358 41965_G01 Complete Genome 2016-01-13T08:12:42.666 Oral Cavity SC 100.0x 98.19 100 0.25 99.99 0.13 GCF_900636445.1 1855 1994 1994 52 18 68 1 Streptococcus_vestibularis_homd_HMT_021 GCA_900636475.1 HMT-543 NCTC10713 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus NCTC10713 1 1953654 38.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/475/GCA_900636475.1_42197_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJEB6403 1328 SAMEA3614267 42197_F01 Complete Genome 2016-01-20T08:08:18.950 not available: to be reported later SC 100.0x 99.99 100 0 99.97 0.03 GCF_900636475.1 1866 1994 1994 56 12 59 1 Streptococcus_anginosus_homd_HMT_543 GCA_900636555.1 HMT-622 NCTC7868 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii NCTC7868 1 2196660 40.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/555/GCA_900636555.1_42731_B01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJEB6403 1302 SAMEA3649040 42731_B01 Complete Genome 2016-02-10T08:07:44.000 United Kingdom: London not available: to be reported later SC 100.0x 95.48 100 0 100 0.14 GCF_900636555.1 2052 2150 2150 26 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_900636715.1 HMT-576 NCTC10708 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus NCTC10708 1 1890902 38.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/715/GCA_900636715.1_43908_E01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJEB6403 33040 SAMEA3729939 43908_E01 Complete Genome 2016-04-13T08:09:00.836 not available: to be reported later SC 100.0x 99 0.12 99.96 0.13 GCF_900636715.1 1789 1896 1896 34 12 60 1 Streptococcus_constellatus_homd_HMT_576 GCA_900636825.1 HMT-612 NCTC9428 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-612 Pseudomonas fluorescens NCTC9428 1 6033966 58.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/825/GCA_900636825.1_44858_E01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E fluorescens_BG PRJEB6403 294 SAMEA3881054 44858_E01 Complete Genome 2016-05-18T12:09:41.810 United Kingdom: London not available: to be reported later SC 100.0x 84.04 99.8 0.11 100 0.31 GCF_900636825.1 5360 5527 5527 72 20 74 1 Pseudomonas_fluorescens_homd_HMT_612 GCA_900636835.1 HMT-686 NCTC10832 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans NCTC10832 1 2005322 36.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/835/GCA_900636835.1_44503_F02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJEB6403 1309 SAMEA3871790 44503_F02 Complete Genome 2016-05-04T11:07:25.710 United Kingdom Dental abscess SC 100.0x 99.15 100 0.75 100 0.1 GCF_900636835.1 1857 1988 1988 48 16 66 1 Streptococcus_mutans_homd_HMT_686 GCA_900636915.1 HMT-545 NCTC5906 Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus NCTC5906 1 2337153 42.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/915/GCA_900636915.1_45532_F02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJEB6403 985008 SAMEA3919800 45532_F02 Complete Genome 2016-06-15T09:07:31.900 United Kingdom: London not available: to be reported later SC 100.0x 99.99 99.89 0.02 100 0.13 GCF_900636915.1 2165 2301 2301 59 19 57 1 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_900636965.1 HMT-749 NCTC13764 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-749 Lacticaseibacillus rhamnosus NCTC13764 1 2988387 46.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/965/GCA_900636965.1_45296_G02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus PRJEB6403 47715 SAMEA3905380 45296_G02 Complete Genome 2016-06-08T12:06:52.543 not available: to be reported later SC 100.0x 99.99 99.46 0 99.96 0.06 GCF_900636965.1 2748 2859 2859 34 15 61 1 Lacticaseibacillus_rhamnosus_homd_HMT_749 GCA_900637025.1 HMT-707 NCTC11427 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis NCTC11427 1 1931548 41.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/025/GCA_900637025.1_46338_H01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJEB6403 655813 SAMEA3936797 46338_H01 Complete Genome 2016-07-20T09:10:43.313 Mouth SC 100.0x 99.99 99.47 0.2 100 0.03 GCF_900637025.1 1791 1902 1902 38 12 60 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_900637025.1 HMT-707 NCTC11427 Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis NCTC11427 1 1931548 41.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/025/GCA_900637025.1_46338_H01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis PRJEB6403 655813 SAMEA3936797 46338_H01 Complete Genome 2016-07-20T09:10:43.313 Mouth SC 100.0x 99.99 99.47 0.2 100 0.03 GCF_900637025.1 1791 1902 1902 38 12 60 1 Streptococcus_oralis_HMT_071_398_707 GCA_900637065.1 HMT-053 NCTC10285 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-053 Corynebacterium minutissimum NCTC10285 1 2696013 59.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/065/GCA_900637065.1_46941_D01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium minutissimum PRJEB6403 38301 SAMEA4017705 46941_D01 Complete Genome 2016-08-17T12:12:16.090 United Kingdom: London not available: to be reported later SC 100.0x 99.99 99.78 0 99.99 0.05 GCF_900637065.1 2467 2540 2540 8 12 51 2 Corynebacterium_minutissimum_homd_HMT_053 GCA_900637145.1 HMT-889 NCTC11815 Named Cultivated Vaginal (Abundance: Medium) HMT-889 Bifidobacterium breve NCTC11815 1 2275664 58.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/145/GCA_900637145.1_49569_E01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium breve PRJEB6403 1685 SAMEA4076721 49569_E01 Complete Genome 2016-12-21T09:11:35.896 intestine SC 100.0x 99.99 100 0 99.96 0.1 GCF_900637145.1 1927 2000 2000 12 6 54 1 Bifidobacterium_breve_homd_HMT_889 GCA_900637175.1 HMT-588 NCTC11816 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-588 Bifidobacterium dentium NCTC11816 1 2635828 58.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/175/GCA_900637175.1_49569_F01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium PRJEB6403 1689 SAMEA4076722 49569_F01 Complete Genome 2016-12-21T09:11:36.036 Dental caries SC 100.0x 99.99 100 0 99.98 0.63 GCF_900637175.1 2136 2211 2211 9 9 56 1 Bifidobacterium_dentium_homd_HMT_588 GCA_900637305.1 HMT-633 NCTC10426 Named Cultivated Oral (Abundance: High) HMT-633 Cardiobacterium hominis NCTC10426 1 2670755 59.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/305/GCA_900637305.1_50618_F02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium hominis PRJEB6403 2718 SAMEA4412685 50618_F02 Complete Genome 2017-01-25T12:05:51.643 Blood culture SC 100.0x 99.98 98.45 0 94.51 0.2 GCF_900637305.1 2410 2487 2487 14 9 53 1 Cardiobacterium_hominis_homd_HMT_633 GCA_900637315.1 HMT-821 NCTC11483 Named Cultivated Pathogen (Abundance: Scarce) HMT-821 Haemophilus ducreyi NCTC11483 1 1594261 37.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/315/GCA_900637315.1_50618_G02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B;s__Haemophilus_B ducreyi PRJEB6403 730 SAMEA4412686 50618_G02 Complete Genome 2017-01-25T12:05:51.710 United Kingdom: Sheffield not available: to be reported later SC 100.0x 99.99 99.6 0 100 0.04 GCF_900637315.1 1523 1608 1608 17 19 48 1 Haemophilus_ducreyi_homd_HMT_821 GCA_900637335.1 HMT-862 NCTC11818 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-862 Bifidobacterium longum NCTC11818 1 2385160 60.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/335/GCA_900637335.1_50618_H02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum PRJEB6403 216816 SAMEA4412687 50618_H02 Complete Genome 2017-01-25T12:05:51.776 intestine SC 100.0x 99.99 100 0 99.96 0.34 GCF_900637335.1 1944 2043 2043 13 8 77 1 Bifidobacterium_longum_homd_HMT_862 GCA_900637475.1 HMT-827 NCTC10275 Named Cultivated Pathogen (Abundance: Scarce) HMT-827 Yersinia pestis NCTC10275 1 4610200 47.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/475/GCA_900637475.1_51108_B01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;s__Yersinia pestis PRJEB6403 633 SAMEA4442458 51108_B01 Complete Genome 2017-02-22T11:09:12.603 not available: to be reported later SC 100.0x 99.99 99.87 0.6 100 0.14 GCF_900637475.1 3953 4302 4302 245 22 81 1 Yersinia_pestis_homd_HMT_827 GCA_900637515.1 HMT-160 NCTC11831 Named Cultivated Oral (Abundance: High) HMT-160 Veillonella dispar NCTC11831 1 2116915 38.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/515/GCA_900637515.1_51184_A01 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella dispar PRJEB6403 39778 SAMEA4442464 51184_A01 Complete Genome 2017-03-03T16:11:44.350 Mouth SC 100.0x 99.99 100 0 99.99 0.05 GCF_900637515.1 1936 2014 2014 17 12 48 1 Veillonella_dispar_homd_HMT_160 GCA_900637555.1 HMT-022 NCTC12852 Named Cultivated Oral (Abundance: High) HMT-022 Lautropia mirabilis NCTC12852 1 3172010 65.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/555/GCA_900637555.1_51726_E01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia mirabilis PRJEB6403 47671 SAMEA4504063 51726_E01 Complete Genome 2017-04-06T14:06:55.833 Gingival margin SC 100.0x 99.99 98.66 0 99.87 0.19 GCF_900637555.1 2527 2608 2608 12 17 50 2 Lautropia_mirabilis_homd_HMT_022 GCA_900637625.1 HMT-829 NCTC10287 Named Cultivated Vaginal (Abundance: High) HMT-829 Gardnerella vaginalis NCTC10287 1 1667383 41.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/625/GCA_900637625.1_52295_C01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium vaginale PRJEB6403 2702 SAMEA4535760 52295_C01 Complete Genome 2017-05-05T08:08:07.296 Vagina SC 100.0x 99.99 99.55 0 99.99 0.59 GCF_900637625.1 1263 1330 1330 15 6 45 1 Gardnerella_vaginalis_homd_HMT_829 GCA_900637655.1 HMT-311 NCTC13071 Named Cultivated Oral (Abundance: High) HMT-311 Segatella oris NCTC13071 1 3168212 43.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/655/GCA_900637655.1_52295_B01 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oris PRJEB6403 28135 SAMEA4535752 52295_B01 Complete Genome 2017-05-05T08:08:07.083 Gingival sulcus SC 100.0x 99.97 99.32 0.34 99.93 0.71 GCF_900637655.1 2703 2787 2787 8 15 60 1 Segatella_oris_homd_HMT_311 GCA_900637725.1 HMT-739 NCTC12967 Named Cultivated Oral (Abundance: Medium) HMT-739 Arachnia propionica NCTC12967 1 3402349 66.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/725/GCA_900637725.1_52551_C01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia propionica PRJEB6403 1750 SAMEA4475699 52551_C01 Complete Genome 2017-03-30T12:18:18.866 USA: Durham, NC not available: to be reported later SC 100.0x 99.99 97.47 1.75 100 0.6 GCF_900637725.1 3003 3084 3084 22 6 52 1 Arachnia_propionica_homd_HMT_739 GCA_900637765.1 HMT-535 NCTC8134 Named Cultivated Pathogen (Abundance: No Data) HMT-535 Haemophilus aegyptius NCTC8134 1 1993241 38.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/765/GCA_900637765.1_52579_G01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB6403 197575 SAMEA26395168 52579_G01 Complete Genome 2017-09-20T08:06:34.403 USA: Maryland not available: to be reported later SC 100.0x 99.99 99.56 0 99.99 0.06 GCF_900637765.1 1973 2092 2092 43 19 56 1 Haemophilus_aegyptius_homd_HMT_535 GCA_900637825.1 HMT-019 NCTC934 Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens NCTC934 1 2373440 59.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/825/GCA_900637825.1_52683_C03 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJEB6403 43990 SAMEA37377418 52683_C03 Complete Genome 2017-09-20T08:06:35.096 United Kingdom: London Nose SC 100.0x 99.78 0 100 0.05 GCF_900637825.1 2174 2246 2246 7 12 52 1 Corynebacterium_accolens_homd_HMT_019 GCA_900637835.1 HMT-197 NCTC8340 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-197 Kocuria rhizophila NCTC8340 1 2697831 71.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/835/GCA_900637835.1_52654_C01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;s__Kocuria rhizophila_A PRJEB6403 72000 SAMEA37372918 52654_C01 Complete Genome 2017-09-20T08:06:34.986 USA: Washington soil SC 100.0x 89.3 98.68 0 99.99 0.15 GCF_900637835.1 2313 2388 2388 15 9 49 2 Kocuria_rhizophila_homd_HMT_197 GCA_900637905.1 HMT-111 NCTC11808 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra NCTC11808 1 1677398 28.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/905/GCA_900637905.1_52756_G01 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJEB6403 33033 SAMEA48415918 52756_G01 Complete Genome 2017-09-20T08:06:35.576 not available: to be reported later SC 100.0x 99.99 98.48 0.61 99.36 0.84 GCF_900637905.1 1550 1636 1636 33 11 41 1 Parvimonas_micra_homd_HMT_111 GCA_900637975.1 HMT-688 NCTC10951 Named Cultivated Oral (Abundance: Medium) HMT-688 Actinomyces viscosus NCTC10951 1 3491241 68.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/975/GCA_900637975.1_53550_F01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces viscosus PRJEB6403 1656 SAMEA101153668 53550_F01 Complete Genome 2017-09-20T08:06:36.703 not available: to be reported later SC 100.0x 99.98 100 1.07 99.99 0.32 GCF_900637975.1 2917 2995 2995 14 9 54 1 Actinomyces_viscosus_homd_HMT_688 GCA_900637985.1 HMT-188 NCTC10207 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria NCTC10207 1 2707814 56.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/985/GCA_900637985.1_54949_H01 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJEB6403 172042 SAMEA103980422 54949_H01 Complete Genome 2017-09-20T08:06:38.160 not available: to be reported later SC 100.0x 97.53 98.34 0 100 0.04 GCF_900637985.1 2360 2431 2431 13 8 49 1 Rothia_aeria_homd_HMT_188 GCA_900638025.1 HMT-718 NCTC10665 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae NCTC10665 1 2062405 39.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/025/GCA_900638025.1_55312_D01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_J PRJEB6403 729 SAMEA104062569 55312_D01 Complete Genome 2017-09-20T08:06:38.643 saliva SC 100.0x 92.14 99.89 0.44 100 0.95 GCF_900638025.1 1967 2072 2072 26 19 59 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_900638055.1 HMT-626 NCTC10459 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 NCTC10459 1 1926227 30.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/055/GCA_900638055.1_55147_A01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans PRJEB6403 1379 SAMEA104016177 55147_A01 Complete Genome 2017-09-20T08:06:38.516 not available: to be reported later SC 100.0x 99.95 98.08 0.57 99.97 0.49 GCF_900638055.1 1687 1773 0 32 12 41 1 Gemella_haemolysans_HMT_434_626 GCA_900638055.1 HMT-626 NCTC10459 Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 NCTC10459 1 1926227 30.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/055/GCA_900638055.1_55147_A01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans PRJEB6403 1379 SAMEA104016177 55147_A01 Complete Genome 2017-09-20T08:06:38.516 not available: to be reported later SC 100.0x 99.95 98.08 0.57 99.97 0.49 GCF_900638055.1 1687 1773 0 32 12 41 1 Gemella_haemolysans_clade_626_homd_HMT_626 GCA_900638105.1 HMT-641 NCTC11873 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC11873 1 1948880 38.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/105/GCA_900638105.1_56433_A01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB6403 727 SAMEA104200675 56433_A01 Complete Genome 2017-11-01T10:09:05.970 not available: to be reported later SC 100.0x 97.08 99.34 0 100 0.33 GCF_900638105.1 1871 1995 1995 44 19 60 1 Haemophilus_influenzae_homd_HMT_641 GCA_900638125.1 HMT-775 NCTC11097 Named Cultivated Oral (Abundance: Medium) HMT-775 Capnocytophaga sputigena NCTC11097 1 2933908 38.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/125/GCA_900638125.1_56080_B02 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena PRJEB6403 1019 SAMEA104200653 56080_B02 Complete Genome 2017-10-13T08:05:50.973 United Kingdom Blood culture SC 100.0x 96.32 99.52 0 99.71 0.06 GCF_900638125.1 2668 2734 2734 6 12 47 1 Capnocytophaga_sputigena_homd_HMT_775 GCA_900638255.1 HMT-666 NCTC10206 Named Cultivated Oral (Abundance: High) HMT-666 Corynebacterium matruchotii NCTC10206 1 2878842 57.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/255/GCA_900638255.1_56931_E02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium matruchotii PRJEB6403 43768 SAMEA104167201 56931_E02 Complete Genome 2017-11-24T10:21:08.103 not available: to be reported later SC 100.0x 97.53 99.67 0 100 1.03 GCF_900638255.1 2580 2653 2653 8 12 52 1 Corynebacterium_matruchotii_homd_HMT_666 GCA_900638535.1 HMT-587 NCTC10918 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa NCTC10918 1 2501750 53.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/535/GCA_900638535.1_57792_C02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJEB6403 2047 SAMEA104224799 57792_C02 Complete Genome 2018-01-26T11:05:28.493 Carious teeth SC 100.0x 96.41 94.81 0.66 99.83 2.23 GCF_900638535.1 2478 2549 2549 13 8 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_900638555.1 HMT-669 NCTC10025 Named Cultivated Oral (Abundance: Scarce) HMT-669 Neisseria meningitidis NCTC10025 1 2186098 51.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/555/GCA_900638555.1_58116_A01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis PRJEB6403 487 SAMEA104307683 58116_A01 Complete Genome 2018-01-26T11:05:31.080 USA: Illinois Spinal fluid SC 100.0x 99.96 99.41 0.21 99.91 0 GCF_900638555.1 2076 2188 2188 37 14 60 1 Neisseria_meningitidis_homd_HMT_669 GCA_900638565.1 HMT-109 NCTC13077 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-109 Peptoniphilus harei NCTC13077 1 1739102 34.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/565/GCA_900638565.1_57800_G01 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A harei PRJEB6403 54005 SAMEA104224812 57800_G01 Complete Genome 2018-01-26T11:05:28.750 United Kingdom Pus SC 100.0x 96.94 99.3 0 99.84 0.05 GCF_900638565.1 1579 1664 1664 34 9 41 1 Peptoniphilus_harei_homd_HMT_109 GCA_900638645.1 HMT-739 NCTC11666 Named Cultivated Oral (Abundance: Medium) HMT-739 Arachnia propionica NCTC11666 1 3405117 66.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/645/GCA_900638645.1_58635_A02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia propionica PRJEB6403 1750 SAMEA104307713 58635_A02 Complete Genome 2018-04-21T08:06:00.056 eye SC 100.0x 97.43 97.47 1.57 100 1.01 GCF_900638645.1 2979 3062 3062 24 6 52 1 Arachnia_propionica_homd_HMT_739 GCA_900638685.1 HMT-092 NCTC12742 Named Cultivated Environmental -Non-Human Animal (Abundance: Scarce) HMT-092 Neisseria weaveri NCTC12742 1 2238481 49.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/685/GCA_900638685.1_58882_C02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria weaveri PRJEB6403 28091 SAMEA104338429 58882_C02 Complete Genome 2018-03-23T16:18:43.813 Sweden: Gothenberg wound SC 100.0x 99.99 100 0.43 100 0.06 GCF_900638685.1 2021 2103 2103 13 12 55 2 Neisseria_weaveri_homd_HMT_092 GCA_900638695.1 HMT-601 NCTC13924 Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis NCTC13924 1 2750807 31.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/638/695/GCA_900638695.1_59178_A02 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJEB6403 1282 SAMEA104318201 59178_A02 Complete Genome 2018-04-08T08:08:15.040 United Kingdom: Dublin Blood culture SC 100.0x 99.55 99.81 0 99.99 0.02 GCF_900638695.1 2643 2805 2805 85 16 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_900654165.1 HMT-101 N13 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava N13 34 2207472 49.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/654/165/GCA_900654165.1_PRJEB30649-R19 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJEB30649 484 SAMEA5208238 PRJEB30649-R19 Contig 2019-09-17T09:05:37.570 Semen URMITE 125.0x 94.39 99.92 0 100 0.03 GCF_900654165.1 CAABZZ01 2090 2167 2167 18 3 54 2 Neisseria_perflava_homd_HMT_101 GCA_900654175.1 HMT-682 N32 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa N32 123 2541217 51.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/654/175/GCA_900654175.1_PRJEB30649_R20 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa_A PRJEB30649 488 SAMEA5208239 PRJEB30649_R20 Contig 2019-09-17T09:05:37.600 Semen URMITE 67.0x 99.92 0.68 100 0 GCF_900654175.1 CAACAC01 2287 2362 2362 16 4 54 1 Neisseria_mucosa_homd_HMT_682 GCA_900654195.1 HMT-476 N78 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava N78 79 2194968 49.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/654/195/GCA_900654195.1_PRJEB30649_R23 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJEB30649 484 SAMEA5208241 PRJEB30649_R23 Contig 2019-09-17T09:05:37.633 Semen URMITE 73.0x 95.14 99.81 0.34 100 0.03 GCF_900654195.1 CAACAF01 2100 2206 2206 50 3 52 1 Neisseria_subflava_homd_HMT_476 GCA_900660445.2 HMT-754 NCTC10113 Named Cultivated Oral (Abundance: Medium) HMT-754 Metamycoplasma salivarium NCTC10113 1 728347 26.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/660/445/GCA_900660445.2_GCA_900660445 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma;s__Metamycoplasma salivarium PRJEB6403 2124 SAMEA4412694 GCA_900660445 Complete Genome 2017-01-25T12:05:52.196 saliva SC 100.0x 99.98 100 0 95.91 0.09 GCF_900660445.2 1304 1343 1343 2 3 33 1 Metamycoplasma_salivarium_homd_HMT_754 GCA_900660465.1 HMT-732 NCTC10119 Named Cultivated Pathogen (Abundance: Scarce) HMT-732 Mycoplasmoides pneumoniae NCTC10119 2 823017 39.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/660/465/GCA_900660465.1_50648_A01-3 d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pneumoniae PRJEB6403 2104 SAMEA4384307 50648_A01-3 Complete Genome 2017-01-25T12:05:50.126 monkey kidney tissue-culture fluids of the FH strain (Eaton Agent Virus) SC 100.0x 99.98 99.25 1.5 99.45 0.25 GCF_900660465.1 1410 1453 1453 2 3 37 1 Mycoplasmoides_pneumoniae_homd_HMT_732 GCA_900683645.1 HMT-072 3012STDY7069329 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum 3012STDY7069329 7 2916518 59.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/683/645/GCA_900683645.1_57792_F02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJEB6403 43770 SAMEA104224803 57792_F02 Contig 2018-01-26T11:05:28.570 not available SC 100.0x 98.72 99.23 0.65 100 1.87 GCF_900683645.1 CAACYF01 2725 2804 2804 9 14 55 1 Corynebacterium_striatum_homd_HMT_072 GCA_900683665.1 HMT-630 3012STDY7078512 Named Cultivated Oral (Abundance: Scarce) HMT-630 Bacteroides heparinolyticus 3012STDY7078512 7 3685643 47.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/683/665/GCA_900683665.1_57940_F02 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides heparinolyticus PRJEB6403 28113 SAMEA104281640 57940_F02 Contig 2018-01-26T11:05:29.876 not available SC 100.0x 97.3 98.33 0.74 99.87 0.33 GCF_900683665.1 CAACYH01 2993 3101 3101 31 12 64 1 Bacteroides_heparinolyticus_homd_HMT_630 GCA_900683725.1 HMT-973 Parabacteroides distasonis 82G9 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-973 Parabacteroides distasonis Parabacteroides distasonis 82G9 1 5212259 45.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/683/725/GCA_900683725.1_Parabacteroides_distasonis_82G9 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis PRJEB29940 435591 SAMEA5128828 Parabacteroides distasonis 82G Complete Genome 2019-02-08T12:13:23.493 Keio University, School of Medicine 40.0x 98.45 99.42 0.13 99.95 0.88 GCF_900683725.1 4412 4544 4544 24 21 86 1 Parabacteroides_distasonis_homd_HMT_973 GCA_900683775.1 HMT-655 Eubacterium limosum 81C1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-655 Eubacterium limosum Eubacterium limosum 81C1 1 4740532 46.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/683/775/GCA_900683775.1_ASM90068377v1 d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__Eubacterium limosum PRJEB29940 1736 SAMEA5128835 ASM90068377v1 Complete Genome 2019-01-28T10:18:46.336 Keio University, School of Medicine 40.0x 98.14 97.89 0 100 3.82 GCF_900683775.1 4483 4663 4663 103 16 60 1 Eubacterium_limosum_homd_HMT_655 GCA_900693025.1 HMT-734 2245STDY6178787 Named Cultivated Oral (Abundance: Scarce) HMT-734 Streptococcus pneumoniae 2245STDY6178787 1 2202359 39.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/693/025/GCA_900693025.1_19341_2_86-2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae PRJEB31141 1313 SAMEA3713867 19341_2#86-2 Complete Genome 2016-06-15T09:07:15.700 China clinical specimen WTSI 150.0x 98.63 99.6 0.32 100 0.37 GCF_900693025.1 2210 2350 2350 89 5 45 1 Streptococcus_pneumoniae_homd_HMT_734 GCA_900699155.1 HMT-005 NCTC5866 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-005 Acinetobacter lwoffii NCTC5866 2 3495680 43.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/699/155/GCA_900699155.1_44927_B02-4 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter lwoffii PRJEB6403 28090 SAMEA3881066 44927_B02-4 Contig 2016-05-18T12:09:42.773 not available: to be reported later SC 100.0x 99.99 99.93 0.82 99.99 1.69 GCF_900699155.1 CAADHN01 3313 3448 3448 24 21 89 1 Acinetobacter_lwoffii_homd_HMT_005 GCA_900699785.1 HMT-763 B91_SC Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae B91_SC 1 2160580 46.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/699/785/GCA_900699785.1_B91_SC d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae_D PRJEB17707 204 SAMEA4535847 B91_SC Complete Genome 2018-09-29T14:06:48.330 United Kingdom Biopsy Univeristy of Aberdeen 525.0x 92.07 99.88 1.12 99.95 1.91 GCF_900699785.1 2069 2128 2128 5 6 47 1 Campylobacter_showae_homd_HMT_763 GCA_900755465.1 HMT-681 HGM02437 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HGM02437 120 2136992 60.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/755/465/GCA_900755465.1_ERS473172_3 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJEB31003 316088 SAMEA5278419 ERS473172_3 Contig 2019-02-01T10:07:41.696 Sweden human stool DOE JGI 37.0x 97.56 0 98.38 0.26 GCF_900755465.1 CAAEGP01 1685 1753 1753 12 4 51 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_900755465.1 HMT-681 HGM02437 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 HGM02437 120 2136992 60.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/755/465/GCA_900755465.1_ERS473172_3 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJEB31003 316088 SAMEA5278419 ERS473172_3 Contig 2019-02-01T10:07:41.696 Sweden human stool DOE JGI 37.0x 97.56 0 98.38 0.26 GCF_900755465.1 CAAEGP01 1685 1753 1753 12 4 51 1 Rothia_mucilaginosa_HMT_147_681 GCA_900755475.1 HMT-948 HGM10404 Named Cultivated Oral (Abundance: Scarce) HMT-948 Streptococcus lactarius HGM10404 79 1951098 41.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/755/475/GCA_900755475.1_ERS473172_12 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus lactarius PRJEB31003 83427 SAMEA5279993 ERS473172_12 Contig 2019-02-01T10:28:07.940 Sweden human stool DOE JGI 56.0x 97.8 0.52 99.9 0.01 GCF_900755475.1 CAAEGO01 1877 1944 1944 42 1 23 1 Streptococcus_lactarius_homd_HMT_948 GCA_900759775.1 HMT-779 HGM14168 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 HGM14168 52 1901086 40.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/759/775/GCA_900759775.1_SRS001031_10 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003999875 PRJEB31003 2049049 SAMEA5279072 SRS001031_10 Contig 2019-02-01T10:16:08.950 USA human stool DOE JGI 454.0x 99.88 0 99.86 0.04 GCF_900759775.1 CAAEWP01 1646 1720 1720 30 2 41 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_901421975.1 HMT-590 NCTC9239 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-590 Brevundimonas diminuta NCTC9239 1 3383349 67.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/421/975/GCA_901421975.1_34410_D01 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__Brevundimonas diminuta PRJEB6403 1325724 SAMEA3121333 34410_D01 Complete Genome 2015-03-25T10:06:49.866 blood SC 100.0x 99.11 0.73 99.82 0.17 GCF_901421975.1 3409 3485 3485 15 6 54 1 Brevundimonas_diminuta_homd_HMT_590 GCA_901472485.1 HMT-641 NCTC8468 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae NCTC8468 1 1876886 38.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/472/485/GCA_901472485.1_35860_G01 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_D PRJEB6403 727 SAMEA3222080 35860_G01 Complete Genome 2015-05-13T13:09:23.083 Spinal fluid SC 100.0x 95.12 99.66 0.45 100 0 GCF_901472485.1 1770 1877 1877 30 19 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_901482445.1 HMT-649 NCTC10617 Named Cultivated Oral (Abundance: Scarce) HMT-649 Neisseria lactamica NCTC10617 1 2198889 52.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/482/445/GCA_901482445.1_45076_H02 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria lactamica PRJEB6403 486 SAMEA3867448 45076_H02 Complete Genome 2016-04-27T09:12:14.783 USA Nose SC 100.0x 99.98 99.92 0 100 0.14 GCF_901482445.1 1997 2090 2090 20 12 60 1 Neisseria_lactamica_homd_HMT_649 GCA_901482635.1 HMT-116 NCTC11045 Named Cultivated Skin (Abundance: High) HMT-116 Staphylococcus capitis NCTC11045 3 2485020 32.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/482/635/GCA_901482635.1_42552_C01 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus capitis PRJEB6403 29388 SAMEA3643313 42552_C01 Contig 2016-01-27T12:05:58.226 Czechoslovakia skin SC 100.0x 99.98 99.81 0.06 99.99 0.37 GCF_901482635.1 CABEEX01 2403 2540 2540 56 19 61 1 Staphylococcus_capitis_homd_HMT_116 GCA_901542355.1 HMT-622 NCTC7870 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii NCTC7870 3 2336084 40.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/542/355/GCA_901542355.1_43597_H01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJEB6403 1302 SAMEA3714882 43597_H01 Contig 2016-04-02T16:29:41.123 throat SC 100.0x 95.58 100 0.28 99.99 0.33 GCF_901542355.1 CABEIB01 2198 2299 2299 29 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_901542415.1 HMT-677 NCTC11189 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis NCTC11189 4 2155387 39.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/542/415/GCA_901542415.1_41965_E01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BL PRJEB6403 28037 SAMEA3594356 41965_E01 Contig 2016-01-13T08:12:42.556 United Kingdom: Scotland not available: not collected SC 100.0x 94.74 99.7 3.34 99.98 4.11 GCF_901542415.1 CABEHV01 2023 2151 2151 56 12 59 1 Streptococcus_mitis_homd_HMT_677 GCA_901542485.1 HMT-543 NCTC11064 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus NCTC11064 1 1904537 38.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/542/485/GCA_901542485.1_42166_C01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJEB6403 1328 SAMEA3597592 42166_C01 Complete Genome 2016-01-20T08:08:17.006 materia alba SC 100.0x 95.65 100 0 99.99 0.17 GCF_901542485.1 1874 1982 1982 36 12 59 1 Streptococcus_anginosus_homd_HMT_543 GCA_901543415.1 HMT-622 NCTC9124 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii NCTC9124 1 2223915 40.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/543/415/GCA_901543415.1_42545_E02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJEB6403 1302 SAMEA3643307 42545_E02 Complete Genome 2016-01-27T12:05:57.876 United Kingdom blood SC 100.0x 95.52 99.81 0 100 0.14 GCF_901543415.1 2103 2202 2202 27 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_901543645.1 HMT-622 NCTC7869 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii NCTC7869 4 2275545 40.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/543/645/GCA_901543645.1_42731_C01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJEB6403 1302 SAMEA3649041 42731_C01 Contig 2016-02-10T08:07:44.080 United Kingdom not available: not collected SC 100.0x 96.41 100 0.37 100 0.42 GCF_901543645.1 CABEIT01 2165 2318 2318 57 17 78 1 Streptococcus_gordonii_homd_HMT_622 GCA_901543815.1 HMT-398 NCTC10232 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani NCTC10232 2 1949061 41.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/543/815/GCA_901543815.1_42731_G02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CM PRJEB6403 1303 SAMEA3662923 42731_G02 Contig 2016-02-10T08:07:45.036 not available: not collected SC 100.0x 93.71 99.17 0.71 99.98 0.17 GCF_901543815.1 CABEIU01 1855 1966 1966 37 12 61 1 Streptococcus_oralis_subsp_dentisani_homd_HMT_398 GCA_901543815.1 HMT-398 NCTC10232 Named Cultivated Oral (Abundance: High) HMT-398 Streptococcus oralis subsp. dentisani NCTC10232 2 1949061 41.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/543/815/GCA_901543815.1_42731_G02 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CM PRJEB6403 1303 SAMEA3662923 42731_G02 Contig 2016-02-10T08:07:45.036 not available: not collected SC 100.0x 93.71 99.17 0.71 99.98 0.17 GCF_901543815.1 CABEIU01 1855 1966 1966 37 12 61 1 Streptococcus_oralis_HMT_071_398_707 GCA_901544385.1 HMT-622 NCTC10231 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii NCTC10231 1 2185555 40.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/544/385/GCA_901544385.1_42912_F01 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJEB6403 1302 SAMEA3662936 42912_F01 Complete Genome 2016-02-22T12:05:54.060 not available: not collected SC 100.0x 96.68 100 0 100 0.08 GCF_901544385.1 2039 2138 2138 27 12 59 1 Streptococcus_gordonii_homd_HMT_622 GCA_901873375.1 HMT-718 Haemophilus_parainfluenzae_BgEED17 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae Haemophilus_parainfluenzae_BgEED17 23 1943763 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/375/GCA_901873375.1_Haemophilus_parainfluenzae_BgEED17 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_O PRJEB32184 729 SAMEA5664362 Haemophilus_parainfluenzae_BgE Contig 2021-02-06T10:37:31.040 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 42.0x 93.02 99.89 0.23 100 0 GCF_901873375.1 CABFLI01 1875 1964 1964 37 4 47 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_901873385.1 HMT-764 Neisseria_sicca_BgEED21 Named Cultivated Oral (Abundance: High) HMT-764 Neisseria sicca Neisseria_sicca_BgEED21 64 2494758 51.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/385/GCA_901873385.1_Neisseria_sicca_BgEED21 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sicca_C PRJEB32184 490 SAMEA5664365 Neisseria_sicca_BgEED21 Contig 2021-02-06T10:37:29.406 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 37.0x 95.49 99.47 0 100 0.06 GCF_901873385.1 CABFLG01 2266 2418 2418 93 3 55 1 Neisseria_sicca_homd_HMT_764 GCA_901873395.1 HMT-201 Fusobacterium_periodonticum_BgEED13 Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum Fusobacterium_periodonticum_BgEED13 136 2561874 27.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/395/GCA_901873395.1_Fusobacterium_periodonticum_BgEED13 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium periodonticum_D PRJEB32184 860 SAMEA5664357 Fusobacterium_periodonticum_Bg Contig 2021-02-06T10:36:54.643 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 37.0x 93.04 98.88 1.12 100 0.59 GCF_901873395.1 CABFLP01 2435 2494 2494 19 3 36 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_901873415.1 HMT-200 Fusobacterium_nucleatum_BgEED12 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii Fusobacterium_nucleatum_BgEED12 36 2208650 27.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/415/GCA_901873415.1_Fusobacterium_nucleatum_BgEED12 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJEB32184 851 SAMEA5664356 Fusobacterium_nucleatum_BgEED1 Contig 2021-02-06T10:37:42.643 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 61.0x 92.57 100 0 99.99 0.05 GCF_901873415.1 CABFLE01 2036 2108 2108 24 3 44 1 Fusobacterium_vincentii_homd_HMT_200 GCA_901873425.1 HMT-534 Granulicatella_adiacens_BgEED15 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens Granulicatella_adiacens_BgEED15 28 1813364 37.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/425/GCA_901873425.1_Granulicatella_adiacens_BgEED15 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJEB32184 46124 SAMEA5664359 Granulicatella_adiacens_BgEED1 Contig 2021-02-06T10:37:00.286 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 59.0x 96.38 99.45 0 100 0.01 GCF_901873425.1 CABFLJ01 1717 1795 1795 32 3 42 1 Granulicatella_adiacens_homd_HMT_534 GCA_901873445.1 HMT-434 Gemella_haemolysans_BgEED14 Named Cultivated Oral (Abundance: High) HMT-434 Gemella haemolysans clade-434 Gemella_haemolysans_BgEED14 77 1922556 30.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/445/GCA_901873445.1_Gemella_haemolysans_BgEED14 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_C PRJEB32184 1379 SAMEA5664358 Gemella_haemolysans_BgEED14 Contig 2021-02-06T10:37:53.020 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 20.0x 87.84 98.37 0 99.98 0.15 GCF_901873445.1 CABFLN01 1700 1772 0 30 6 35 1 Gemella_haemolysans_clade_434_homd_HMT_434 GCA_901873445.1 HMT-434 Gemella_haemolysans_BgEED14 Named Cultivated Oral (Abundance: High) HMT-434 Gemella haemolysans clade-434 Gemella_haemolysans_BgEED14 77 1922556 30.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/445/GCA_901873445.1_Gemella_haemolysans_BgEED14 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_C PRJEB32184 1379 SAMEA5664358 Gemella_haemolysans_BgEED14 Contig 2021-02-06T10:37:53.020 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 20.0x 87.84 98.37 0 99.98 0.15 GCF_901873445.1 CABFLN01 1700 1772 0 30 6 35 1 Gemella_haemolysans_HMT_434_626 GCA_901873485.1 HMT-417 na Unnamed Cultivated Oral (Abundance: High) HMT-417 Leptotrichia sp. HMT-417 na 64 2375404 29.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/485/GCA_901873485.1_Leptotrichia_sp._BgEED20 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei_A PRJEB32184 159271 SAMEA5664364 Leptotrichia_sp._BgEED20 Contig 2021-02-06T10:37:52.233 human duodenal aspirate WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 38.0x 100 1.3 99.99 0.04 GCF_901873485.1 CABFLH01 2221 2284 2284 22 3 37 1 Leptotrichia_sp_HMT_417_homd_HMT_417 GCA_901873565.1 HMT-709 Lactobacillus_oris_BgEED19 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-709 Limosilactobacillus oris Lactobacillus_oris_BgEED19 85 2130048 49.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/565/GCA_901873565.1_Lactobacillus_oris_BgEED19 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus oris PRJEB32184 1632 SAMEA5664363 Lactobacillus_oris_BgEED19 Contig 2021-02-06T10:37:49.773 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 25.0x 99.82 99.45 0 99.99 0.51 GCF_901873565.1 CABFLO01 2060 2148 2148 25 3 59 1 Limosilactobacillus_oris_homd_HMT_709 GCA_901873715.1 HMT-169 Actinomyces_naeslundii_BgEED02 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 Actinomyces_naeslundii_BgEED02 20 3147367 68.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/715/GCA_901873715.1_Actinomyces_naeslundii_BgEED02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJEB32184 1655 SAMEA5664348 Actinomyces_naeslundii_BgEED02 Contig 2021-02-06T10:37:19.390 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 24.0x 88.72 100 0.95 100 0.07 GCF_901873715.1 CABFLV01 2561 2632 2632 14 3 53 1 Actinomyces_oris_clade_169_homd_HMT_169 GCA_901873715.1 HMT-169 Actinomyces_naeslundii_BgEED02 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 Actinomyces_naeslundii_BgEED02 20 3147367 68.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/715/GCA_901873715.1_Actinomyces_naeslundii_BgEED02 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJEB32184 1655 SAMEA5664348 Actinomyces_naeslundii_BgEED02 Contig 2021-02-06T10:37:19.390 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 24.0x 88.72 100 0.95 100 0.07 GCF_901873715.1 CABFLV01 2561 2632 2632 14 3 53 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_901873995.1 HMT-610 Neisseria_subflava_BgEED22 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens Neisseria_subflava_BgEED22 76 2211994 49.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/995/GCA_901873995.1_Neisseria_subflava_BgEED22 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens PRJEB32184 28449 SAMEA5664366 Neisseria_subflava_BgEED22 Contig 2021-02-06T10:37:40.990 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 37.0x 95.15 99.92 0.23 100 0.07 CABFLW01 2110 2182 2182 20 3 48 1 Neisseria_flavescens_homd_HMT_610 GCA_901874975.1 HMT-433 Campylobacter_concisus_BgEED07 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 Campylobacter_concisus_BgEED07 31 1990492 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/874/975/GCA_901874975.1_Campylobacter_concisus_BgEED07 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AW PRJEB32184 199 SAMEA5664352 Campylobacter_concisus_BgEED07 Contig 2021-02-06T10:37:32.530 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 40.0x 88.72 99.51 0.19 99.96 0.08 GCF_901874975.1 CABFLX01 1931 1973 1973 4 2 35 1 Campylobacter_concisus_HMT_433_575 GCA_901874975.1 HMT-433 Campylobacter_concisus_BgEED07 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 Campylobacter_concisus_BgEED07 31 1990492 39.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/874/975/GCA_901874975.1_Campylobacter_concisus_BgEED07 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AW PRJEB32184 199 SAMEA5664352 Campylobacter_concisus_BgEED07 Contig 2021-02-06T10:37:32.530 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 40.0x 88.72 99.51 0.19 99.96 0.08 GCF_901874975.1 CABFLX01 1931 1973 1973 4 2 35 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_901875295.1 HMT-714 na Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens na 151 2861587 37.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/295/GCA_901875295.1_Prevotella_sp._BgEED25 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJEB32184 159272 SAMEA5664369 Prevotella_sp._BgEED25 Contig 2021-02-06T10:37:50.583 human duodenal aspirate WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 22.0x 99.66 0.17 99.87 0.18 GCF_901875295.1 CABFMB01 2315 2370 2370 7 3 44 1 Prevotella_pallens_homd_HMT_714 GCA_901875305.1 HMT-681 Rothia_mucilaginosa_BgEED27 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 Rothia_mucilaginosa_BgEED27 9 2236411 60.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/305/GCA_901875305.1_Rothia_mucilaginosa_BgEED27 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJEB32184 43675 SAMEA5664371 Rothia_mucilaginosa_BgEED27 Contig 2021-02-06T10:37:41.870 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 40.0x 88.83 99.33 0 100 0.18 GCF_901875305.1 CABFLY01 1756 1826 1826 12 7 50 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_901875305.1 HMT-681 Rothia_mucilaginosa_BgEED27 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 Rothia_mucilaginosa_BgEED27 9 2236411 60.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/305/GCA_901875305.1_Rothia_mucilaginosa_BgEED27 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJEB32184 43675 SAMEA5664371 Rothia_mucilaginosa_BgEED27 Contig 2021-02-06T10:37:41.870 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 40.0x 88.83 99.33 0 100 0.18 GCF_901875305.1 CABFLY01 1756 1826 1826 12 7 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_901875315.1 HMT-587 Rothia_dentocariosa_BgEED26 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa Rothia_dentocariosa_BgEED26 11 2453562 53.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/315/GCA_901875315.1_Rothia_dentocariosa_BgEED26 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJEB32184 2047 SAMEA5664370 Rothia_dentocariosa_BgEED26 Contig 2021-02-06T10:37:26.190 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 27.0x 96.72 99.34 0 100 0.08 GCF_901875315.1 CABFMC01 2106 2173 2173 13 4 49 1 Rothia_dentocariosa_homd_HMT_587 GCA_901875325.1 HMT-476 Neisseria_subflava_BgEED23 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava Neisseria_subflava_BgEED23 51 2274583 49.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/325/GCA_901875325.1_Neisseria_subflava_BgEED23 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJEB32184 28449 SAMEA5664367 Neisseria_subflava_BgEED23 Contig 2021-02-06T10:37:48.236 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 35.0x 93.89 100 0.23 99.91 0.02 GCF_901875325.1 CABFLZ01 2159 2245 2245 31 3 51 1 Neisseria_subflava_homd_HMT_476 GCA_901875335.1 HMT-469 Prevotella_melaninogenica_BgEED24 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica Prevotella_melaninogenica_BgEED24 57 3192247 40.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/335/GCA_901875335.1_Prevotella_melaninogenica_BgEED24 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB32184 28132 SAMEA5664368 Prevotella_melaninogenica_BgEE Contig 2021-02-06T10:37:47.463 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 21.0x 96.1 99.32 0.17 99.93 0.01 GCF_901875335.1 CABFMA01 2540 2601 2601 10 3 47 1 Prevotella_melaninogenica_homd_HMT_469 GCA_901875535.1 HMT-524 Veillonella_atypica_BgEED38 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica Veillonella_atypica_BgEED38 60 2078559 38.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/535/GCA_901875535.1_Veillonella_atypica_BgEED38 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJEB32184 39777 SAMEA5664382 Veillonella_atypica_BgEED38 Contig 2021-02-06T10:37:12.900 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 49.0x 95.53 100 0 100 0.11 GCF_901875535.1 CABFMO01 1863 1929 1929 22 4 39 1 Veillonella_atypica_homd_HMT_524 GCA_901875545.1 HMT-543 Streptococcus_anginosus_BgEED29 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus Streptococcus_anginosus_BgEED29 49 1934591 38.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/545/GCA_901875545.1_Streptococcus_anginosus_BgEED29 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJEB32184 1328 SAMEA5664374 Streptococcus_anginosus_BgEED2 Contig 2021-02-06T10:37:10.550 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 54.0x 95.7 99.88 0.25 99.98 0.16 GCF_901875545.1 CABFME01 1912 1997 1997 37 3 44 1 Streptococcus_anginosus_homd_HMT_543 GCA_901875565.1 HMT-686 Streptococcus_mutans_BgEED33 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans Streptococcus_mutans_BgEED33 14 1980736 36.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/565/GCA_901875565.1_Streptococcus_mutans_BgEED33 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJEB32184 1309 SAMEA5664376 Streptococcus_mutans_BgEED33 Contig 2021-02-06T10:37:49.003 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 57.0x 99.16 100 0.75 100 0.1 GCF_901875565.1 CABFML01 1870 1958 1958 41 3 43 1 Streptococcus_mutans_homd_HMT_686 GCA_901876955.1 HMT-161 Veillonella_parvula_BgEED39 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula Veillonella_parvula_BgEED39 13 2125241 38.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/876/955/GCA_901876955.1_Veillonella_parvula_BgEED39 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJEB32184 29466 SAMEA5664383 Veillonella_parvula_BgEED39 Contig 2021-02-06T10:37:12.033 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES 38.0x 96.66 100 0 99.98 0.3 GCF_901876955.1 CABFMP01 1916 1981 1981 21 4 39 1 Veillonella_parvula_homd_HMT_161 GCA_902159415.1 HMT-677 4928STDY7071560 Named Cultivated Oral (Abundance: High) HMT-677 Streptococcus mitis 4928STDY7071560 11 1709483 38.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/159/415/GCA_902159415.1_25426_7_64 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mitis_BG PRJEB22252 28037 SAMEA104567666 25426_7#64 Contig 2019-06-29T08:07:48.093 United Kingdom faecal SC 175.0x 84.54 99.32 0.42 99.94 0.14 GCF_902159415.1 CABGJU01 1684 1775 1775 32 5 53 1 Streptococcus_mitis_homd_HMT_677 GCA_902167825.1 HMT-021 Streptococcus_salivarius_SS_Bg39 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis Streptococcus_salivarius_SS_Bg39 37 2029376 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/167/825/GCA_902167825.1_Streptococcus_salivarius_SS_Bg39 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJEB26419 1343 SAMEA5771516 Streptococcus_salivarius_SS_Bg Contig 2019-07-14T10:19:51.900 The Edison Family Center of Genome Sciences and Systems Biology 234.0x 96.72 99.44 0.35 99.99 0.02 GCF_902167825.1 CABHNJ01 1897 1988 1988 36 6 48 1 Streptococcus_vestibularis_homd_HMT_021 GCA_902362205.1 HMT-966 MGYG-HGUT-00003 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-966 Alistipes shahii MGYG-HGUT-00003 18 3234232 58.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/362/205/GCA_902362205.1_MGYG-HGUT-00003 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii PRJEB33885 2049048 SAMEA5849504 MGYG-HGUT-00003 Scaffold 2019-08-07T10:17:07.836 United Kingdom human gut EMG 10.0x 100 0 99.96 0.51 GCF_902362205.1 CABIWH01 2690 2758 2758 15 3 49 1 Alistipes_shahii_homd_HMT_966 GCA_902362895.1 HMT-964 MGYG-HGUT-00074 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-964 Alistipes onderdonkii MGYG-HGUT-00074 8 3215546 58.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/362/895/GCA_902362895.1_MGYG-HGUT-00074 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii PRJEB33885 2049048 SAMEA5849575 MGYG-HGUT-00074 Scaffold 2019-08-07T10:17:09.930 United Kingdom human gut EMG 10.0x 99.28 0.48 99.99 0.26 GCF_902362895.1 CABIYG01 2638 2706 2706 14 3 50 1 Alistipes_onderdonkii_homd_HMT_964 GCA_902362995.1 HMT-059 MGYG-HGUT-00081 Named Cultivated Nasal (Abundance: High) HMT-059 Corynebacterium propinquum MGYG-HGUT-00081 18 2504704 56.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/362/995/GCA_902362995.1_MGYG-HGUT-00081 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium propinquum PRJEB33885 43769 SAMEA5849582 MGYG-HGUT-00081 Scaffold 2019-08-07T10:17:10.256 United Kingdom human gut EMG 10.0x 97.87 99.67 0 99.98 0.07 GCF_902362995.1 CABIYR01 2246 2304 2304 7 3 47 1 Corynebacterium_propinquum_homd_HMT_059 GCA_902363285.1 HMT-403 MGYG-HGUT-00112 Unnamed Cultivated Oral (Abundance: No Data) HMT-403 Actinomyces sp. HMT-403 MGYG-HGUT-00112 10 3112947 68.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/363/285/GCA_902363285.1_MGYG-HGUT-00112 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp900323545 PRJEB33885 1898202 SAMEA5849613 MGYG-HGUT-00112 Contig 2019-08-07T10:17:11.256 not provided human gut EMG 10.0x 100 0.47 100 0.58 GCF_902363285.1 CABIZR01 2572 2647 2647 13 5 55 2 Actinomyces_sp_HMT_403_homd_HMT_403 GCA_902363295.1 HMT-073 MGYG-HGUT-00109 Named Cultivated Oral (Abundance: High) HMT-073 Streptococcus australis MGYG-HGUT-00109 7 2017290 42.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/363/295/GCA_902363295.1_MGYG-HGUT-00109 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp004166885 PRJEB33885 2291322 SAMEA5849610 MGYG-HGUT-00109 Scaffold 2019-08-07T10:17:11.163 not provided human gut EMG 10.0x 100 0 99.99 0.01 GCF_902363295.1 CABIZS01 1915 2016 2016 39 4 57 1 Streptococcus_australis_homd_HMT_073 GCA_902363415.1 HMT-755 MGYG-HGUT-00113 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius MGYG-HGUT-00113 26 2252077 39.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/363/415/GCA_902363415.1_MGYG-HGUT-00113 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJEB33885 1304 SAMEA5849614 MGYG-HGUT-00113 Scaffold 2019-08-07T10:17:11.290 not provided human gut EMG 10.0x 97.22 99.84 0.25 99.99 0.6 GCF_902363415.1 CABIZY01 2036 2131 2131 38 4 52 1 Streptococcus_salivarius_homd_HMT_755 GCA_902364015.1 HMT-678 MGYG-HGUT-00173 Named Cultivated Oral (Abundance: Medium) HMT-678 Solobacterium moorei MGYG-HGUT-00173 7 1989891 36.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/364/015/GCA_902364015.1_MGYG-HGUT-00173 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia;s__Bulleidia moorei PRJEB33885 102148 SAMEA5849675 MGYG-HGUT-00173 Scaffold 2019-08-07T10:17:13.146 China human gut EMG 10.0x 98.21 100 0 97.55 0.21 GCF_902364015.1 CABJCF01 1916 1993 1993 30 3 43 1 Solobacterium_moorei_homd_HMT_678 GCA_902364735.1 HMT-976 MGYG-HGUT-00243 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-976 Phocaeicola massiliensis MGYG-HGUT-00243 63 3948010 42.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/364/735/GCA_902364735.1_MGYG-HGUT-00243 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola massiliensis PRJEB33885 204516 SAMEA5849745 MGYG-HGUT-00243 Scaffold 2019-08-07T10:17:15.320 China human gut EMG 10.0x 99.28 99.26 0.19 99.93 0 GCF_902364735.1 CABJEV01 3283 3388 3388 29 3 72 1 Phocaeicola_massiliensis_homd_HMT_976 GCA_902365065.1 HMT-686 MGYG-HGUT-00277 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans MGYG-HGUT-00277 12 2020615 36.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/365/065/GCA_902365065.1_MGYG-HGUT-00277 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJEB33885 1309 SAMEA5849779 MGYG-HGUT-00277 Scaffold 2019-08-07T10:17:16.396 China human gut EMG 10.0x 99.33 100 0 100 0.05 GCF_902365065.1 CABJGC01 1910 1979 1979 29 3 36 1 Streptococcus_mutans_homd_HMT_686 GCA_902373285.1 HMT-681 MGYG-HGUT-01258 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 MGYG-HGUT-01258 51 2162110 60.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/285/GCA_902373285.1_MGYG-HGUT-01258 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJEB33885 316088 SAMEA5850761 MGYG-HGUT-01258 Contig 2019-08-07T10:17:47.616 Italy human gut EMG 10.0x 99.33 0 100 0.31 GCF_902373285.1 CABKLQ01 1691 1754 1754 12 4 46 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_902373285.1 HMT-681 MGYG-HGUT-01258 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 MGYG-HGUT-01258 51 2162110 60.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/285/GCA_902373285.1_MGYG-HGUT-01258 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJEB33885 316088 SAMEA5850761 MGYG-HGUT-01258 Contig 2019-08-07T10:17:47.616 Italy human gut EMG 10.0x 99.33 0 100 0.31 GCF_902373285.1 CABKLQ01 1691 1754 1754 12 4 46 1 Rothia_mucilaginosa_HMT_147_681 GCA_902373365.1 HMT-655 MGYG-HGUT-01276 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-655 Eubacterium limosum MGYG-HGUT-01276 62 3903827 47.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/365/GCA_902373365.1_UHGG_MGYG-HGUT-01276 d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__Eubacterium limosum PRJEB33885 165185 SAMEA5850779 UHGG_MGYG-HGUT-01276 Contig 2019-08-07T10:17:48.193 Italy human gut EMG 10.0x 89.44 0 90.27 0.27 CABKLY02 3672 3773 3773 63 1 37 0 Eubacterium_limosum_homd_HMT_655 GCA_902373445.1 HMT-681 MGYG-HGUT-01269 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 MGYG-HGUT-01269 163 2178797 59.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/445/GCA_902373445.1_MGYG-HGUT-01269 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB33885 316088 SAMEA5850772 MGYG-HGUT-01269 Contig 2019-08-07T10:17:47.976 Italy human gut EMG 10.0x 97.11 0.33 99.73 0.77 GCF_902373445.1 CABKMF01 1718 1780 1780 13 2 46 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_902373445.1 HMT-681 MGYG-HGUT-01269 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 MGYG-HGUT-01269 163 2178797 59.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/445/GCA_902373445.1_MGYG-HGUT-01269 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB33885 316088 SAMEA5850772 MGYG-HGUT-01269 Contig 2019-08-07T10:17:47.976 Italy human gut EMG 10.0x 97.11 0.33 99.73 0.77 GCF_902373445.1 CABKMF01 1718 1780 1780 13 2 46 1 Rothia_mucilaginosa_HMT_147_681 GCA_902373505.1 HMT-195 MGYG-HGUT-01283 Named Cultivated Oral (Abundance: Medium) HMT-195 Scardovia wiggsiae MGYG-HGUT-01283 17 1508369 53.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/505/GCA_902373505.1_MGYG-HGUT-01283 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia wiggsiae PRJEB33885 655654 SAMEA5850786 MGYG-HGUT-01283 Contig 2019-08-07T10:17:48.400 Italy human gut EMG 10.0x 96.45 0.06 96.22 0.09 GCF_902373505.1 CABKMK01 1219 1272 1272 7 0 45 1 Scardovia_wiggsiae_homd_HMT_195 GCA_902373555.1 HMT-662 MGYG-HGUT-01291 Named Cultivated Nasal (Abundance: Medium) HMT-662 Finegoldia magna MGYG-HGUT-01291 2 1986740 32.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/555/GCA_902373555.1_MGYG-HGUT-01291 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia;s__Finegoldia magna_H PRJEB33885 1260 SAMEA5850794 MGYG-HGUT-01291 Contig 2019-08-07T10:17:48.616 not provided human gut EMG 10.0x 91.13 99.39 0 99.96 0.25 GCF_902373555.1 CABKMR01 1842 1930 1930 26 12 49 1 Finegoldia_magna_homd_HMT_662 GCA_902373575.1 HMT-948 MGYG-HGUT-01289 Named Cultivated Oral (Abundance: Scarce) HMT-948 Streptococcus lactarius MGYG-HGUT-01289 63 1985520 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/575/GCA_902373575.1_MGYG-HGUT-01289 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus lactarius PRJEB33885 83427 SAMEA5850792 MGYG-HGUT-01289 Contig 2019-08-07T10:17:48.570 Italy human gut EMG 10.0x 97.18 0.18 95.26 0.02 GCF_902373575.1 CABKMY01 1865 1941 1941 54 2 19 1 Streptococcus_lactarius_homd_HMT_948 GCA_902373585.1 HMT-160 MGYG-HGUT-01288 Named Cultivated Oral (Abundance: High) HMT-160 Veillonella dispar MGYG-HGUT-01288 70 1882142 38.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/585/GCA_902373585.1_MGYG-HGUT-01288 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella dispar PRJEB33885 159268 SAMEA5850791 MGYG-HGUT-01288 Contig 2019-08-07T10:17:48.540 Italy human gut EMG 10.0x 100 0.6 99.99 0.09 GCF_902373585.1 CABKMU01 1712 1766 1766 16 0 37 1 Veillonella_dispar_homd_HMT_160 GCA_902373605.1 HMT-605 MGYG-HGUT-01295 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-605 Desulfovibrio fairfieldensis MGYG-HGUT-01295 3 3663932 60.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/605/GCA_902373605.1_MGYG-HGUT-01295 d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__Desulfovibrio fairfieldensis_A PRJEB33885 2049043 SAMEA5850798 MGYG-HGUT-01295 Contig 2019-08-07T10:17:48.740 not provided human gut EMG 10.0x 99.41 0 99.99 0 GCF_902373605.1 CABKMQ01 3092 3176 3176 20 9 54 1 Desulfovibrio_fairfieldensis_homd_HMT_605 GCA_902373675.1 HMT-111 MGYG-HGUT-01301 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra MGYG-HGUT-01301 16 1703872 28.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/675/GCA_902373675.1_MGYG-HGUT-01301 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJEB33885 33033 SAMEA5850804 MGYG-HGUT-01301 Scaffold 2019-08-07T10:17:48.913 not provided human gut EMG 10.0x 100 98.48 1.02 99.51 2.71 GCF_902373675.1 CABKNC01 1590 1667 1667 33 4 39 1 Parvimonas_micra_homd_HMT_111 GCA_902373685.1 HMT-961 MGYG-HGUT-01300 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-961 Faecalibacterium prausnitzii MGYG-HGUT-01300 25 3127383 56.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/685/GCA_902373685.1_MGYG-HGUT-01300 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii PRJEB33885 853 SAMEA5850803 MGYG-HGUT-01300 Scaffold 2019-08-07T10:17:48.883 not provided human gut EMG 10.0x 96.82 100 0 99.81 0.36 GCF_902373685.1 CABKNH01 2887 3009 3009 38 17 66 1 Faecalibacterium_prausnitzii_homd_HMT_961 GCA_902373695.1 HMT-965 MGYG-HGUT-01302 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-965 Alistipes putredinis MGYG-HGUT-01302 12 2550678 53.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/695/GCA_902373695.1_MGYG-HGUT-01302 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis PRJEB33885 28117 SAMEA5850805 MGYG-HGUT-01302 Scaffold 2019-08-07T10:17:48.930 not provided human gut EMG 10.0x 100 99.52 0.96 99.99 0.94 GCF_902373695.1 CABKND01 2345 2420 2420 19 7 48 1 Alistipes_putredinis_homd_HMT_965 GCA_902373855.1 HMT-420 MGYG-HGUT-01326 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis MGYG-HGUT-01326 2 2514029 26.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/855/GCA_902373855.1_MGYG-HGUT-01326 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJEB33885 851 SAMEA5850829 MGYG-HGUT-01326 Contig 2019-08-07T10:17:49.633 not provided human gut EMG 10.0x 91.69 100 0 100 0.56 GCF_902373855.1 CABKNP01 2428 2509 2509 19 15 46 1 Fusobacterium_animalis_homd_HMT_420 GCA_902373875.1 HMT-684 MGYG-HGUT-01316 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-684 Mitsuokella multacida MGYG-HGUT-01316 6 2577056 58.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/875/GCA_902373875.1_MGYG-HGUT-01316 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;s__Mitsuokella multacida PRJEB33885 52226 SAMEA5850819 MGYG-HGUT-01316 Scaffold 2019-08-07T10:17:49.350 not provided human gut EMG 10.0x 100 100 0.31 100 0.02 GCF_902373875.1 CABKNT01 2296 2469 2469 79 17 76 1 Mitsuokella_multacida_homd_HMT_684 GCA_902373895.1 HMT-860 MGYG-HGUT-01325 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-860 Fusobacterium gonidiaformans MGYG-HGUT-01325 28 1930430 35.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/895/GCA_902373895.1_MGYG-HGUT-01325 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C gonidiaformans PRJEB33885 849 SAMEA5850828 MGYG-HGUT-01325 Scaffold 2019-08-07T10:17:49.600 not provided human gut EMG 10.0x 98.74 100 0 99.92 0.35 GCF_902373895.1 CABKOB01 1881 1942 1942 13 2 45 1 Fusobacterium_gonidiaformans_homd_HMT_860 GCA_902373915.1 HMT-201 MGYG-HGUT-01324 Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum MGYG-HGUT-01324 6 2546312 30.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/373/915/GCA_902373915.1_MGYG-HGUT-01324 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium periodonticum_D PRJEB33885 860 SAMEA5850827 MGYG-HGUT-01324 Scaffold 2019-08-07T10:17:49.570 not provided human gut EMG 10.0x 92.98 100 0.56 100 0.01 GCF_902373915.1 CABKNO01 2339 2422 2422 21 11 50 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_902374055.1 HMT-161 MGYG-HGUT-01349 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula MGYG-HGUT-01349 10 2174425 38.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/055/GCA_902374055.1_MGYG-HGUT-01349 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJEB33885 29466 SAMEA5850852 MGYG-HGUT-01349 Scaffold 2019-08-07T10:17:50.490 not provided human gut EMG 10.0x 96.44 100 0 100 0.31 GCF_902374055.1 CABKOT01 1923 2001 2001 22 6 49 1 Veillonella_parvula_homd_HMT_161 GCA_902374085.1 HMT-622 MGYG-HGUT-01342 Named Cultivated Oral (Abundance: High) HMT-622 Streptococcus gordonii MGYG-HGUT-01342 5 2231411 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/085/GCA_902374085.1_MGYG-HGUT-01342 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gordonii PRJEB33885 1302 SAMEA5850845 MGYG-HGUT-01342 Scaffold 2019-08-07T10:17:50.290 not provided human gut EMG 10.0x 95.32 100 0 100 0.13 GCF_902374085.1 CABKOS01 2149 2230 2230 27 4 49 1 Streptococcus_gordonii_homd_HMT_622 GCA_902374155.1 HMT-461 MGYG-HGUT-01335 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-461 Lactobacillus ultunensis MGYG-HGUT-01335 48 2248406 38.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/155/GCA_902374155.1_MGYG-HGUT-01335 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus ultunensis PRJEB33885 227945 SAMEA5850838 MGYG-HGUT-01335 Scaffold 2019-08-07T10:17:49.900 not provided human gut EMG 10.0x 100 98.9 0 99.94 0.1 GCF_902374155.1 CABKOR01 2117 2215 2215 37 3 57 1 Lactobacillus_ultunensis_homd_HMT_461 GCA_902374185.1 HMT-588 MGYG-HGUT-01354 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-588 Bifidobacterium dentium MGYG-HGUT-01354 2 2642081 58.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/185/GCA_902374185.1_MGYG-HGUT-01354 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium PRJEB33885 1689 SAMEA5850857 MGYG-HGUT-01354 Contig 2019-08-07T10:17:50.633 not provided human gut EMG 10.0x 99.98 100 0 99.98 0.58 GCF_902374185.1 CABKPB01 2135 2210 2210 9 9 56 1 Bifidobacterium_dentium_homd_HMT_588 GCA_902374215.1 HMT-201 MGYG-HGUT-01350 Named Cultivated Oral (Abundance: High) HMT-201 Fusobacterium periodonticum MGYG-HGUT-01350 31 2479455 28.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/215/GCA_902374215.1_MGYG-HGUT-01350 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium periodonticum_B PRJEB33885 860 SAMEA5850853 MGYG-HGUT-01350 Scaffold 2019-08-07T10:17:50.523 not provided human gut EMG 10.0x 92.97 100 0 99.97 0.17 GCF_902374215.1 CABKPC01 2383 2461 2461 23 8 46 1 Fusobacterium_periodonticum_homd_HMT_201 GCA_902374235.1 HMT-307 MGYG-HGUT-01360 Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae MGYG-HGUT-01360 40 3274581 43.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/235/GCA_902374235.1_MGYG-HGUT-01360 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJEB33885 228604 SAMEA5850863 MGYG-HGUT-01360 Scaffold 2019-08-07T10:17:50.803 not provided human gut EMG 10.0x 100 98.98 0 99.87 0.18 GCF_902374235.1 CABKPN01 2662 2724 2724 9 3 49 1 Segatella_salivae_homd_HMT_307 GCA_902374285.1 HMT-543 MGYG-HGUT-01362 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus MGYG-HGUT-01362 7 1821055 38.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/285/GCA_902374285.1_MGYG-HGUT-01362 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vaginalis PRJEB33885 1328 SAMEA5850865 MGYG-HGUT-01362 Scaffold 2019-08-07T10:17:50.850 not provided human gut EMG 10.0x 95.67 100 0 99.99 0.17 GCF_902374285.1 CABKPH01 1774 1872 1872 33 3 61 1 Streptococcus_anginosus_homd_HMT_543 GCA_902374375.1 HMT-977 MGYG-HGUT-01364 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-977 Phocaeicola plebeius MGYG-HGUT-01364 19 4421924 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/375/GCA_902374375.1_MGYG-HGUT-01364 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius PRJEB33885 310297 SAMEA5850867 MGYG-HGUT-01364 Scaffold 2019-08-07T10:17:50.913 not provided human gut EMG 10.0x 100 99.25 0.68 99.96 1 GCF_902374375.1 CABKPU01 3643 3757 3757 22 14 77 1 Phocaeicola_plebeius_homd_HMT_977 GCA_902374455.1 HMT-099 MGYG-HGUT-01381 Named Cultivated Oral (Abundance: Medium) HMT-099 Neisseria macacae MGYG-HGUT-01381 66 2748368 52.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/455/GCA_902374455.1_MGYG-HGUT-01381 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria macacae PRJEB33885 496 SAMEA5850884 MGYG-HGUT-01381 Scaffold 2019-08-07T10:17:51.430 not provided human gut EMG 10.0x 100 99.45 0 100 0.53 GCF_902374455.1 CABKQF01 2453 2532 2532 19 3 56 1 Neisseria_macacae_homd_HMT_099 GCA_902374575.1 HMT-433 MGYG-HGUT-01392 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 MGYG-HGUT-01392 13 1895632 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/575/GCA_902374575.1_MGYG-HGUT-01392 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJEB33885 199 SAMEA5850895 MGYG-HGUT-01392 Scaffold 2019-08-07T10:17:51.756 not provided human gut EMG 10.0x 88.78 99.32 0 99.97 0.15 GCF_902374575.1 CABKQH01 1906 1956 1956 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_902374575.1 HMT-433 MGYG-HGUT-01392 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 MGYG-HGUT-01392 13 1895632 39.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/575/GCA_902374575.1_MGYG-HGUT-01392 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJEB33885 199 SAMEA5850895 MGYG-HGUT-01392 Scaffold 2019-08-07T10:17:51.756 not provided human gut EMG 10.0x 88.78 99.32 0 99.97 0.15 GCF_902374575.1 CABKQH01 1906 1956 1956 4 2 43 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902374745.1 HMT-181 MGYG-HGUT-01411 Named NVP Cultivated Oral (Abundance: Medium) HMT-181 Schaalia lingnae MGYG-HGUT-01411 10 1864179 56.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/374/745/GCA_902374745.1_MGYG-HGUT-01411 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000308055 PRJEB33885 1898202 SAMEA5850914 MGYG-HGUT-01411 Contig 2019-08-07T10:17:52.303 not provided human gut EMG 10.0x 99.84 0.71 99.85 0.09 GCF_902374745.1 CABKRD01 1608 1668 1668 7 4 48 1 Schaalia_lingnae_homd_HMT_181 GCA_902375045.1 HMT-552 MGYG-HGUT-01446 Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum MGYG-HGUT-01446 2 2741290 63.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/375/045/GCA_902375045.1_MGYG-HGUT-01446 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJEB33885 33010 SAMEA5850949 MGYG-HGUT-01446 Scaffold 2019-08-07T10:17:53.303 not provided human gut EMG 10.0x 96.46 99.78 0.66 99.98 0.35 GCF_902375045.1 CABKSM01 2504 2588 2588 28 5 50 1 Cutibacterium_avidum_homd_HMT_552 GCA_902375065.1 HMT-524 MGYG-HGUT-01444 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica MGYG-HGUT-01444 3 2071607 39.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/375/065/GCA_902375065.1_MGYG-HGUT-01444 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJEB33885 39777 SAMEA5850947 MGYG-HGUT-01444 Scaffold 2019-08-07T10:17:53.240 not provided human gut EMG 10.0x 96.76 100 0 100 0.05 GCF_902375065.1 CABKSO01 1854 1930 1930 18 9 48 1 Veillonella_atypica_homd_HMT_524 GCA_902375085.1 HMT-705 MGYG-HGUT-01447 Named Cultivated Oral (Abundance: Low) HMT-705 Hoylesella oralis MGYG-HGUT-01447 7 2857367 44.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/375/085/GCA_902375085.1_MGYG-HGUT-01447 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella phocaeensis PRJEB33885 28134 SAMEA5850950 MGYG-HGUT-01447 Scaffold 2019-08-07T10:17:53.336 not provided human gut EMG 10.0x 99.87 99.29 0.36 99.16 0 GCF_902375085.1 CABKSK01 2348 2421 2421 7 9 56 1 Hoylesella_oralis_homd_HMT_705 GCA_902375175.1 HMT-344 MGYG-HGUT-01457 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-344 Pseudomonas luteola MGYG-HGUT-01457 9 5701016 55.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/375/175/GCA_902375175.1_MGYG-HGUT-01457 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B;s__Pseudomonas_B luteola PRJEB33885 1914538 SAMEA5850960 MGYG-HGUT-01457 Scaffold 2019-08-07T10:17:53.600 not provided human gut EMG 10.0x 99.62 0.76 100 0.11 GCF_902375175.1 CABKSW01 5335 5474 5474 58 13 67 1 Pseudomonas_luteola_homd_HMT_344 GCA_902375195.1 HMT-698 MGYG-HGUT-01459 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto MGYG-HGUT-01459 50 2284954 28.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/375/195/GCA_902375195.1_MGYG-HGUT-01459 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJEB33885 851 SAMEA5850962 MGYG-HGUT-01459 Scaffold 2019-08-07T10:17:53.663 not provided human gut EMG 10.0x 98.87 98.88 0.72 99.99 0.57 GCF_902375195.1 CABKSX01 2088 2166 2166 18 10 49 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_902375245.1 HMT-202 MGYG-HGUT-01464 Named Cultivated Oral (Abundance: Medium) HMT-202 Fusobacterium polymorphum MGYG-HGUT-01464 13 2631404 28.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/375/245/GCA_902375245.1_MGYG-HGUT-01464 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium polymorphum PRJEB33885 851 SAMEA5850967 MGYG-HGUT-01464 Scaffold 2019-08-07T10:17:53.790 not provided human gut EMG 10.0x 92.31 100 0 100 0.58 GCF_902375245.1 CABKTD01 2432 2519 2519 23 16 47 1 Fusobacterium_polymorphum_homd_HMT_202 GCA_902376145.1 HMT-413 MGYG-HGUT-01557 Unnamed Cultivated Oral (Abundance: Medium) HMT-413 Alloprevotella sp. HMT-413 MGYG-HGUT-01557 6 2771606 47.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/376/145/GCA_902376145.1_MGYG-HGUT-01557 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella massiliensis PRJEB33885 2049047 SAMEA5851060 MGYG-HGUT-01557 Scaffold 2019-08-07T10:17:56.523 not provided human gut EMG 10.0x 97.3 1.49 96.04 1.07 GCF_902376145.1 CABKWU01 2188 2286 2286 7 22 68 1 Alloprevotella_sp_HMT_413_homd_HMT_413 GCA_902376155.1 HMT-123 MGYG-HGUT-01559 Named NVP** Uncultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-123 Anaeroglobus massiliensis MGYG-HGUT-01559 2 1715864 50.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/376/155/GCA_902376155.1_MGYG-HGUT-01559 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus massiliensis PRJEB33885 1852379 SAMEA5851062 MGYG-HGUT-01559 Contig 2019-08-07T10:17:56.586 not provided human gut EMG 10.0x 100 99.4 0 89.94 0.1 GCF_902376155.1 CABKWQ01 1609 1743 1743 74 9 50 1 Anaeroglobus_massiliensis_homd_HMT_123 GCA_902376175.1 HMT-248 MGYG-HGUT-01555 Unnamed Cultivated Oral (Abundance: High) HMT-248 Fusobacterium sp. HMT-248 MGYG-HGUT-01555 6 1809170 27.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/376/175/GCA_902376175.1_MGYG-HGUT-01555 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium massiliense PRJEB33885 1852365 SAMEA5851058 MGYG-HGUT-01555 Scaffold 2019-08-07T10:17:56.460 not provided human gut EMG 10.0x 100 98.88 1.12 99.99 0.28 GCF_902376175.1 CABKWM01 1649 1722 1722 15 8 48 2 Fusobacterium_sp_HMT_248_homd_HMT_248 GCA_902377555.1 HMT-030 MGYG-HGUT-01701 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-030 Corynebacterium afermentans MGYG-HGUT-01701 50 2240769 65.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/377/555/GCA_902377555.1_MGYG-HGUT-01701 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium afermentans PRJEB33885 38286 SAMEA5851205 MGYG-HGUT-01701 Contig 2019-08-07T10:18:00.650 not provided human gut EMG 10.0x 97.59 97.32 0 99.58 0.09 GCF_902377555.1 CABLBV01 2121 2190 2190 8 5 55 1 Corynebacterium_afermentans_homd_HMT_030 GCA_902381645.1 HMT-200 MGYG-HGUT-01347 Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii MGYG-HGUT-01347 1 2268272 27.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/381/645/GCA_902381645.1_UHGG_MGYG-HGUT-01347 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJEB33885 851 SAMEA5850850 UHGG_MGYG-HGUT-01347 Complete Genome 2019-08-07T10:17:50.430 not provided human gut EMG 10.0x 92.54 100 0 99.99 0.08 GCF_902381645.1 2156 2238 2238 19 15 47 1 Fusobacterium_vincentii_homd_HMT_200 GCA_902381725.1 HMT-354 MGYG-HGUT-01448 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-354 Dermabacter hominis MGYG-HGUT-01448 1 2377736 63.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/381/725/GCA_902381725.1_UHGG_MGYG-HGUT-01448 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermabacteraceae;g__Dermabacter;s__Dermabacter hominis PRJEB33885 1667168 SAMEA5850951 UHGG_MGYG-HGUT-01448 Chromosome 2019-08-07T10:17:53.350 not provided human gut EMG 10.0x 96.55 94.15 0.15 100 0.05 GCF_902381725.1 2133 2197 2197 6 9 48 1 Dermabacter_hominis_homd_HMT_354 GCA_902381815.1 HMT-580 MGYG-HGUT-01706 Named Cultivated Oral (Abundance: Low) HMT-580 Campylobacter curvus MGYG-HGUT-01706 1 1971264 44.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/381/815/GCA_902381815.1_UHGG_MGYG-HGUT-01706 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A curvus PRJEB33885 200 SAMEA5851210 UHGG_MGYG-HGUT-01706 Complete Genome 2019-08-07T10:18:00.790 not provided human gut EMG 10.0x 95.9 99.88 0 99.95 0.17 GCF_902381815.1 1945 2003 2003 4 6 47 1 Campylobacter_curvus_homd_HMT_580 GCA_902384065.1 HMT-815 MGYG-HGUT-02162 Named Cultivated Oral (Abundance: Scarce) HMT-815 Methanobrevibacter oralis MGYG-HGUT-02162 60 2083511 27.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/384/065/GCA_902384065.1_UHGG_MGYG-HGUT-02162 d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanocatella;s__Methanocatella oralis PRJEB33885 66851 SAMEA5851666 UHGG_MGYG-HGUT-02162 Contig 2019-08-07T10:18:16.180 not provided human gut EMG 10.0x 99.84 96.8 0 90.16 2.59 GCF_902384065.1 CABMAB01 2268 2304 2304 3 2 31 0 Methanobrevibacter_oralis_homd_HMT_815 GCA_902385235.1 HMT-792 MGYG-HGUT-02269 Named Cultivated Skin (Abundance: Medium) HMT-792 Anaerococcus nagyae MGYG-HGUT-02269 16 1825047 30.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/385/235/GCA_902385235.1_UHGG_MGYG-HGUT-02269 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus nagyae PRJEB33885 1891242 SAMEA5851773 UHGG_MGYG-HGUT-02269 Scaffold 2019-08-07T10:18:19.663 China human gut EMG 10.0x 98.78 0.61 99.46 0.91 GCF_902385235.1 CABMEQ01 1696 1779 1779 30 5 47 1 Anaerococcus_nagyae_homd_HMT_792 GCA_902385485.1 HMT-456 MGYG-HGUT-02296 Named NVP Cultivated Oral (Abundance: No Data) HMT-456 Streptococcus koreensis MGYG-HGUT-02296 8 1965871 42.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/385/485/GCA_902385485.1_UHGG_MGYG-HGUT-02296 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ilei PRJEB33885 2291322 SAMEA5851800 UHGG_MGYG-HGUT-02296 Scaffold 2019-08-07T10:18:20.616 China human gut EMG 10.0x 99.83 0 100 0.01 GCF_902385485.1 CABMFT01 1813 1894 0 31 3 46 1 Streptococcus_ilei_homd_HMT_456 GCA_902385495.1 HMT-076 MGYG-HGUT-02301 Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri MGYG-HGUT-02301 28 2673248 32.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/385/495/GCA_902385495.1_UHGG_MGYG-HGUT-02301 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJEB33885 1292 SAMEA5851805 UHGG_MGYG-HGUT-02301 Scaffold 2019-08-07T10:18:20.760 China human gut EMG 10.0x 99.62 99.73 0.1 100 0.24 GCF_902385495.1 CABMFV01 2607 2650 0 0 4 38 1 Staphylococcus_warneri_homd_HMT_076 GCA_902385605.1 HMT-021 MGYG-HGUT-02302 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis MGYG-HGUT-02302 52 1898011 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/385/605/GCA_902385605.1_UHGG_MGYG-HGUT-02302 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJEB33885 1343 SAMEA5851806 UHGG_MGYG-HGUT-02302 Scaffold 2019-08-07T10:18:20.790 China human gut EMG 10.0x 96.82 99.56 0.23 100 0.01 GCF_902385605.1 CABMFU01 1794 1876 1876 42 3 36 1 Streptococcus_vestibularis_homd_HMT_021 GCA_902385805.1 HMT-187 MGYG-HGUT-02317 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-187 Peptoniphilus grossensis MGYG-HGUT-02317 77 2029837 33.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/385/805/GCA_902385805.1_UHGG_MGYG-HGUT-02317 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A grossensis PRJEB33885 1465756 SAMEA5851821 UHGG_MGYG-HGUT-02317 Contig 2019-08-07T10:18:21.260 not provided human gut EMG 10.0x 100 99.18 0 99.3 0.12 GCF_902385805.1 CABMGS01 1980 2036 2036 27 2 26 1 Peptoniphilus_grossensis_homd_HMT_187 GCA_902385825.1 HMT-962 MGYG-HGUT-02321 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-962 Hominimerdicola aceti MGYG-HGUT-02321 2 2968500 42.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/385/825/GCA_902385825.1_UHGG_MGYG-HGUT-02321 d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola;s__Hominimerdicola aceti PRJEB33885 2485925 SAMEA5851825 UHGG_MGYG-HGUT-02321 Contig 2019-08-07T10:18:21.383 not provided human gut EMG 10.0x 98.63 0 99.95 2.83 GCF_902385825.1 CABMGW01 2745 2838 2838 24 12 56 1 Hominimerdicola_aceti_homd_HMT_962 GCA_902386295.1 HMT-690 MGYG-HGUT-02362 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum MGYG-HGUT-02362 34 2094695 35.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/386/295/GCA_902386295.1_UHGG_MGYG-HGUT-02362 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJEB33885 859 SAMEA5851866 UHGG_MGYG-HGUT-02362 Contig 2019-08-07T10:18:22.603 Spain human gut EMG 10.0x 98.62 100 0 100 0.17 GCF_902386295.1 CABMIK01 1977 2040 2040 20 3 39 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_902387015.1 HMT-575 MGYG-HGUT-02430 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 MGYG-HGUT-02430 39 1891545 37.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/387/015/GCA_902387015.1_UHGG_MGYG-HGUT-02430 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_L PRJEB33885 199 SAMEA5851935 UHGG_MGYG-HGUT-02430 Contig 2019-08-07T10:18:24.663 not provided human gut EMG 10.0x 93.95 99.82 0.37 99.91 0.05 GCF_902387015.1 CABMKP01 1901 1960 0 4 5 49 1 Campylobacter_concisus_HMT_433_575 GCA_902387015.1 HMT-575 MGYG-HGUT-02430 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 MGYG-HGUT-02430 39 1891545 37.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/387/015/GCA_902387015.1_UHGG_MGYG-HGUT-02430 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_L PRJEB33885 199 SAMEA5851935 UHGG_MGYG-HGUT-02430 Contig 2019-08-07T10:18:24.663 not provided human gut EMG 10.0x 93.95 99.82 0.37 99.91 0.05 GCF_902387015.1 CABMKP01 1901 1960 0 4 5 49 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_902387035.1 HMT-575 MGYG-HGUT-02435 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 MGYG-HGUT-02435 66 1884438 37.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/387/035/GCA_902387035.1_UHGG_MGYG-HGUT-02435 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJEB33885 199 SAMEA5851940 UHGG_MGYG-HGUT-02435 Contig 2019-08-07T10:18:24.806 Denmark human gut EMG 10.0x 99.46 99.51 0.37 99.95 0.02 GCF_902387035.1 CABMKQ01 1903 1953 1953 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_902387035.1 HMT-575 MGYG-HGUT-02435 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 MGYG-HGUT-02435 66 1884438 37.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/387/035/GCA_902387035.1_UHGG_MGYG-HGUT-02435 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJEB33885 199 SAMEA5851940 UHGG_MGYG-HGUT-02435 Contig 2019-08-07T10:18:24.806 Denmark human gut EMG 10.0x 99.46 99.51 0.37 99.95 0.02 GCF_902387035.1 CABMKQ01 1903 1953 1953 4 2 43 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_902387055.1 HMT-575 MGYG-HGUT-02428 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 MGYG-HGUT-02428 30 1937734 37.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/387/055/GCA_902387055.1_UHGG_MGYG-HGUT-02428 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_W PRJEB33885 199 SAMEA5851933 UHGG_MGYG-HGUT-02428 Contig 2019-08-07T10:18:24.616 not provided human gut EMG 10.0x 93.91 99.88 0.56 99.99 0.18 GCF_902387055.1 CABMKR01 2018 2076 0 4 4 49 1 Campylobacter_concisus_HMT_433_575 GCA_902387055.1 HMT-575 MGYG-HGUT-02428 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 MGYG-HGUT-02428 30 1937734 37.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/387/055/GCA_902387055.1_UHGG_MGYG-HGUT-02428 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_W PRJEB33885 199 SAMEA5851933 UHGG_MGYG-HGUT-02428 Contig 2019-08-07T10:18:24.616 not provided human gut EMG 10.0x 93.91 99.88 0.56 99.99 0.18 GCF_902387055.1 CABMKR01 2018 2076 0 4 4 49 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_902387355.1 HMT-895 MGYG-HGUT-02459 Named Cultivated Gastrointestinal Tract (Abundance: Scarce) HMT-895 Bifidobacterium animalis MGYG-HGUT-02459 1 1958651 60.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/387/355/GCA_902387355.1_UHGG_MGYG-HGUT-02459 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis PRJEB33885 28025 SAMEA5851964 UHGG_MGYG-HGUT-02459 Complete Genome 2019-08-07T10:18:25.556 China human gut EMG 10.0x 99.99 100 0 99.9 0.26 GCF_902387355.1 1570 1649 1649 9 16 53 1 Bifidobacterium_animalis_homd_HMT_895 GCA_902387715.1 HMT-960 MGYG-HGUT-02492 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-960 Agathobacter rectalis MGYG-HGUT-02492 1 3449685 41.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/387/715/GCA_902387715.1_UHGG_MGYG-HGUT-02492 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter;s__Agathobacter rectalis PRJEB33885 1898203 SAMEA5851997 UHGG_MGYG-HGUT-02492 Complete Genome 2019-08-07T10:18:26.570 not provided human gut EMG 10.0x 99.28 0 99.99 0.28 GCF_902387715.1 3270 3460 3460 120 10 59 1 Agathobacter_rectalis_homd_HMT_960 GCA_902387945.1 HMT-107 MGYG-HGUT-02522 Named Cultivated Oral (Abundance: Medium) HMT-107 Lachnoanaerobaculum umeaense MGYG-HGUT-02522 1 2810441 35.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/387/945/GCA_902387945.1_UHGG_MGYG-HGUT-02522 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum umeaense PRJEB33885 617123 SAMEA5852027 UHGG_MGYG-HGUT-02522 Complete Genome 2019-08-07T10:18:27.476 Sweden human gut EMG 10.0x 100 99.37 0 99.14 0.21 GCF_902387945.1 2570 2643 0 12 10 50 1 Lachnoanaerobaculum_umeaense_homd_HMT_107 GCA_902388165.1 HMT-540 MGYG-HGUT-02541 Named Cultivated Oral (Abundance: Medium) HMT-540 Cardiobacterium valvarum MGYG-HGUT-02541 198 2547857 58.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/388/165/GCA_902388165.1_UHGG_MGYG-HGUT-02541 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium valvarum PRJEB33885 194702 SAMEA5852046 UHGG_MGYG-HGUT-02541 Contig 2019-08-07T10:18:28.336 not provided human gut EMG 10.0x 96.69 97.51 0 88.51 0.83 GCF_902388165.1 CABMOK01 2512 2575 2575 13 4 45 1 Cardiobacterium_valvarum_homd_HMT_540 GCA_902388245.1 HMT-418 MGYG-HGUT-02542 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-418 Lentilactobacillus parafarraginis MGYG-HGUT-02542 212 2852137 45.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/388/245/GCA_902388245.1_UHGG_MGYG-HGUT-02542 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus parafarraginis PRJEB33885 390842 SAMEA5852047 UHGG_MGYG-HGUT-02542 Contig 2019-08-07T10:18:28.370 not provided human gut EMG 10.0x 97.56 98.94 1.46 99.62 4.27 GCF_902388245.1 CABMOW01 2864 2958 2958 47 1 45 1 Lentilactobacillus_parafarraginis_homd_HMT_418 GCA_902388305.1 HMT-035 MGYG-HGUT-02551 Named Cultivated Oral (Abundance: High) HMT-035 Haemophilus paraphrohaemolyticus MGYG-HGUT-02551 182 1748237 40.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/388/305/GCA_902388305.1_UHGG_MGYG-HGUT-02551 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A paraphrohaemolyticus PRJEB33885 237779 SAMEA5852056 UHGG_MGYG-HGUT-02551 Contig 2019-08-07T10:18:28.620 China human gut EMG 10.0x 92.73 0.23 89.94 0.8 GCF_902388305.1 CABMOT01 1619 1668 1668 26 0 22 1 Haemophilus_paraphrohaemolyticus_homd_HMT_035 GCA_902405965.1 HMT-674 MGYG-HGUT-04259 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-674 Atopobium minutum MGYG-HGUT-04259 9 1625916 48.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/405/965/GCA_902405965.1_UHGG_MGYG-HGUT-04259 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium;s__Atopobium minutum PRJEB33885 274587 SAMEA5853766 UHGG_MGYG-HGUT-04259 Contig 2019-08-07T10:19:24.243 China human gut EMG 10.0x 100 0 99.91 0.35 GCF_902405965.1 CABPBZ01 1456 1510 1510 7 0 46 1 Atopobium_minutum_homd_HMT_674 GCA_902406175.1 HMT-547 MGYG-HGUT-04267 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-547 Porphyromonas asaccharolytica MGYG-HGUT-04267 74 2088006 52.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/406/175/GCA_902406175.1_UHGG_MGYG-HGUT-04267 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas asaccharolytica PRJEB33885 159274 SAMEA5853774 UHGG_MGYG-HGUT-04267 Contig 2019-08-07T10:19:24.493 China human gut EMG 10.0x 99.92 0 99.9 0.06 GCF_902406175.1 CABPCR01 1651 1717 1717 23 0 42 1 Porphyromonas_asaccharolytica_homd_HMT_547 GCA_902406345.1 HMT-122 MGYG-HGUT-04289 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis MGYG-HGUT-04289 14 1684653 45.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/406/345/GCA_902406345.1_UHGG_MGYG-HGUT-04289 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJEB33885 165188 SAMEA5853796 UHGG_MGYG-HGUT-04289 Contig 2019-08-07T10:19:25.213 China human gut EMG 10.0x 100 0 99.49 0.31 CABPDK01 1589 1668 1668 29 0 49 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_902460335.1 HMT-578 Marseille-P5794 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus Marseille-P5794 12 2073737 42.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/335/GCA_902460335.1_P5794 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_I PRJEB29559 45634 SAMEA5743007 P5794 Contig 2019-08-29T08:11:53.590 URMITE 121.0x 95 100 0.37 99.99 0.11 GCF_902460335.1 CABPTQ01 1968 2046 2046 32 5 40 1 Streptococcus_cristatus_homd_HMT_578 GCA_902460345.1 HMT-578 Marseille-P644 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus Marseille-P644 15 2075917 42.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/345/GCA_902460345.1_P644 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp030272855 PRJEB29558 45634 SAMEA5743003 P644 Scaffold 2019-08-29T08:11:53.530 URMITE 174.0x 95.05 100 0.06 99.97 0.12 GCF_902460345.1 CABPTP01 1990 2069 2069 32 5 41 1 Streptococcus_cristatus_homd_HMT_578 GCA_902460365.1 HMT-578 Marseille-P7375 Named Cultivated Oral (Abundance: Low) HMT-578 Streptococcus cristatus Marseille-P7375 10 2230759 42.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/365/GCA_902460365.1_PRJEB29560 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus cristatus_I PRJEB29560 2487318 SAMEA5894163 PRJEB29560 Contig 2019-08-29T08:13:40.906 URMITE 60.0x 100 0 99.99 0.09 GCF_902460365.1 CABPTR01 2220 2308 2308 40 5 42 1 Streptococcus_cristatus_homd_HMT_578 GCA_902460385.1 HMT-767 Marseille-P7376 Named Cultivated Oral (Abundance: Scarce) HMT-767 Streptococcus sinensis Marseille-P7376 56 2292862 41.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/385/GCA_902460385.1_PRJEB33225 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sinensis PRJEB33225 2592044 SAMEA5894164 PRJEB33225 Contig 2019-08-29T08:13:40.936 URMITE 60.0x 100 0 100 0.12 GCF_902460385.1 CABPTS01 2198 2305 2305 66 4 36 1 Streptococcus_sinensis_homd_HMT_767 GCA_902460415.1 HMT-575 2010-112100-F Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 2010-112100-F 20 1898749 39.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/415/GCA_902460415.1_2010-112100-F d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_Y PRJEB22351 199 SAMEA5905236 2010-112100-F Scaffold 2019-08-29T09:14:01.753 Univeristy of Aberdeen 74.0x 93.92 99.88 0.63 99.97 0 GCF_902460415.1 CABPTY01 1826 1874 1874 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_902460415.1 HMT-575 2010-112100-F Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 2010-112100-F 20 1898749 39.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/415/GCA_902460415.1_2010-112100-F d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_Y PRJEB22351 199 SAMEA5905236 2010-112100-F Scaffold 2019-08-29T09:14:01.753 Univeristy of Aberdeen 74.0x 93.92 99.88 0.63 99.97 0 GCF_902460415.1 CABPTY01 1826 1874 1874 4 2 41 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_902460445.1 HMT-575 2009-42653 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 2009-42653 13 2012410 38.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/445/GCA_902460445.1_2009-42653 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_X PRJEB22351 199 SAMEA5905231 2009-42653 Scaffold 2019-08-29T09:14:01.630 Univeristy of Aberdeen 67.0x 93.93 99.75 0.12 99.88 0.05 GCF_902460445.1 CABPUD01 1978 2028 2028 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_902460445.1 HMT-575 2009-42653 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 2009-42653 13 2012410 38.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/445/GCA_902460445.1_2009-42653 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_X PRJEB22351 199 SAMEA5905231 2009-42653 Scaffold 2019-08-29T09:14:01.630 Univeristy of Aberdeen 67.0x 93.93 99.75 0.12 99.88 0.05 GCF_902460445.1 CABPUD01 1978 2028 2028 4 2 43 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_902460455.1 HMT-433 2010-112708 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-112708 47 2133743 44.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/455/GCA_902460455.1_2010-112708 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJEB22351 199 SAMEA5905238 2010-112708 Scaffold 2019-08-29T09:14:01.800 Univeristy of Aberdeen 91.0x 88.66 98.64 2.79 99.99 2.77 GCF_902460455.1 CABPUC01 1953 2006 0 4 2 46 1 Campylobacter_concisus_HMT_433_575 GCA_902460455.1 HMT-433 2010-112708 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-112708 47 2133743 44.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/455/GCA_902460455.1_2010-112708 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJEB22351 199 SAMEA5905238 2010-112708 Scaffold 2019-08-29T09:14:01.800 Univeristy of Aberdeen 91.0x 88.66 98.64 2.79 99.99 2.77 GCF_902460455.1 CABPUC01 1953 2006 0 4 2 46 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460465.1 HMT-433 2009-75775 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2009-75775 52 2145119 40.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/465/GCA_902460465.1_2009-75775 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJEB22351 199 SAMEA5905233 2009-75775 Scaffold 2019-08-29T09:14:01.676 Univeristy of Aberdeen 66.0x 88.67 99.51 0.43 99.97 0.05 GCF_902460465.1 CABPUA01 2020 2069 0 4 2 42 1 Campylobacter_concisus_HMT_433_575 GCA_902460465.1 HMT-433 2009-75775 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2009-75775 52 2145119 40.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/465/GCA_902460465.1_2009-75775 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJEB22351 199 SAMEA5905233 2009-75775 Scaffold 2019-08-29T09:14:01.676 Univeristy of Aberdeen 66.0x 88.67 99.51 0.43 99.97 0.05 GCF_902460465.1 CABPUA01 2020 2069 0 4 2 42 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460475.1 HMT-575 2009-173039 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 2009-173039 17 1903393 39.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/475/GCA_902460475.1_2009-173039 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJEB22351 199 SAMEA5905230 2009-173039 Scaffold 2019-08-29T09:14:01.596 Univeristy of Aberdeen 114.0x 99.31 99.69 0.49 99.87 0.57 GCF_902460475.1 CABPUF01 1882 1930 1930 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_902460475.1 HMT-575 2009-173039 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 2009-173039 17 1903393 39.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/475/GCA_902460475.1_2009-173039 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus PRJEB22351 199 SAMEA5905230 2009-173039 Scaffold 2019-08-29T09:14:01.596 Univeristy of Aberdeen 114.0x 99.31 99.69 0.49 99.87 0.57 GCF_902460475.1 CABPUF01 1882 1930 1930 4 2 41 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_902460505.1 HMT-433 2010-112100-O Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-112100-O 12 2030392 40.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/505/GCA_902460505.1_2010-112100-O d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJEB22351 199 SAMEA5905237 2010-112100-O Scaffold 2019-08-29T09:14:01.783 Univeristy of Aberdeen 58.0x 88.4 99.51 0.12 99.97 0.04 GCF_902460505.1 CABPTT01 1946 2000 0 4 4 45 1 Campylobacter_concisus_HMT_433_575 GCA_902460505.1 HMT-433 2010-112100-O Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-112100-O 12 2030392 40.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/505/GCA_902460505.1_2010-112100-O d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJEB22351 199 SAMEA5905237 2010-112100-O Scaffold 2019-08-29T09:14:01.783 Univeristy of Aberdeen 58.0x 88.4 99.51 0.12 99.97 0.04 GCF_902460505.1 CABPTT01 1946 2000 0 4 4 45 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460535.1 HMT-433 2010-112825 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-112825 15 1913489 40.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/535/GCA_902460535.1_2010-112825 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AS PRJEB22351 199 SAMEA5905240 2010-112825 Scaffold 2019-08-29T09:14:01.863 Univeristy of Aberdeen 77.0x 88.72 99.51 0.56 99.79 0.91 GCF_902460535.1 CABPTV01 1869 1927 0 4 6 47 1 Campylobacter_concisus_HMT_433_575 GCA_902460535.1 HMT-433 2010-112825 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-112825 15 1913489 40.4 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/535/GCA_902460535.1_2010-112825 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AS PRJEB22351 199 SAMEA5905240 2010-112825 Scaffold 2019-08-29T09:14:01.863 Univeristy of Aberdeen 77.0x 88.72 99.51 0.56 99.79 0.91 GCF_902460535.1 CABPTV01 1869 1927 0 4 6 47 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460615.1 HMT-433 2010-31374 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-31374 19 1953836 41.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/615/GCA_902460615.1_2010-31374 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJEB22351 199 SAMEA5905255 2010-31374 Scaffold 2019-08-29T09:14:02.363 Univeristy of Aberdeen 97.0x 88.4 99.51 0 99.98 0.31 GCF_902460615.1 CABPUJ01 1853 1903 1903 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_902460615.1 HMT-433 2010-31374 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-31374 19 1953836 41.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/615/GCA_902460615.1_2010-31374 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJEB22351 199 SAMEA5905255 2010-31374 Scaffold 2019-08-29T09:14:02.363 Univeristy of Aberdeen 97.0x 88.4 99.51 0 99.98 0.31 GCF_902460615.1 CABPUJ01 1853 1903 1903 4 2 43 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460635.1 HMT-433 2010-16206 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-16206 14 1997691 40.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/635/GCA_902460635.1_2010-16206 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AX PRJEB22351 199 SAMEA5905248 2010-16206 Scaffold 2019-08-29T09:14:02.160 Univeristy of Aberdeen 93.0x 88.7 99.51 0.2 99.96 0.13 GCF_902460635.1 CABPUS01 1923 1972 1972 4 2 42 1 Campylobacter_concisus_HMT_433_575 GCA_902460635.1 HMT-433 2010-16206 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-16206 14 1997691 40.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/635/GCA_902460635.1_2010-16206 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AX PRJEB22351 199 SAMEA5905248 2010-16206 Scaffold 2019-08-29T09:14:02.160 Univeristy of Aberdeen 93.0x 88.7 99.51 0.2 99.96 0.13 GCF_902460635.1 CABPUS01 1923 1972 1972 4 2 42 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460675.1 HMT-433 2010-131105 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-131105 7 2051300 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/675/GCA_902460675.1_2010-131105 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AJ PRJEB22351 199 SAMEA5905247 2010-131105 Scaffold 2019-08-29T09:14:02.130 Univeristy of Aberdeen 68.0x 88.59 99.51 0.43 99.98 0.01 GCF_902460675.1 CABPUQ01 1972 2022 0 4 2 43 1 Campylobacter_concisus_HMT_433_575 GCA_902460675.1 HMT-433 2010-131105 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-131105 7 2051300 39.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/675/GCA_902460675.1_2010-131105 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AJ PRJEB22351 199 SAMEA5905247 2010-131105 Scaffold 2019-08-29T09:14:02.130 Univeristy of Aberdeen 68.0x 88.59 99.51 0.43 99.98 0.01 GCF_902460675.1 CABPUQ01 1972 2022 0 4 2 43 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460695.1 HMT-433 2010-33561 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-33561 16 2128539 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/695/GCA_902460695.1_2010-33561 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJEB22351 199 SAMEA5905256 2010-33561 Scaffold 2019-08-29T09:14:02.393 Univeristy of Aberdeen 63.0x 88.73 99.51 0.37 99.93 0.07 GCF_902460695.1 CABPUK01 2044 2102 2102 4 4 49 1 Campylobacter_concisus_HMT_433_575 GCA_902460695.1 HMT-433 2010-33561 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-33561 16 2128539 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/695/GCA_902460695.1_2010-33561 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_T PRJEB22351 199 SAMEA5905256 2010-33561 Scaffold 2019-08-29T09:14:02.393 Univeristy of Aberdeen 63.0x 88.73 99.51 0.37 99.93 0.07 GCF_902460695.1 CABPUK01 2044 2102 2102 4 4 49 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460715.1 HMT-433 2010-113332-O Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-113332-O 7 2069805 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/715/GCA_902460715.1_2010-113332-O d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AK PRJEB22351 199 SAMEA5905242 2010-113332-O Scaffold 2019-08-29T09:14:01.940 Univeristy of Aberdeen 59.0x 88.68 99.51 0.49 99.98 0.03 GCF_902460715.1 CABPUX01 1976 2024 2024 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_902460715.1 HMT-433 2010-113332-O Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-113332-O 7 2069805 40.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/715/GCA_902460715.1_2010-113332-O d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AK PRJEB22351 199 SAMEA5905242 2010-113332-O Scaffold 2019-08-29T09:14:01.940 Univeristy of Aberdeen 59.0x 88.68 99.51 0.49 99.98 0.03 GCF_902460715.1 CABPUX01 1976 2024 2024 4 2 41 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460725.1 HMT-433 2010-113862-O Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-113862-O 18 1951669 41.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/725/GCA_902460725.1_2010-113862-O d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJEB22351 199 SAMEA5905244 2010-113862-O Scaffold 2019-08-29T09:14:02.033 Univeristy of Aberdeen 86.0x 88.84 99.14 0.49 99.96 0.44 GCF_902460725.1 CABPUN01 1947 1995 1995 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_902460725.1 HMT-433 2010-113862-O Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-113862-O 18 1951669 41.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/725/GCA_902460725.1_2010-113862-O d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_R PRJEB22351 199 SAMEA5905244 2010-113862-O Scaffold 2019-08-29T09:14:02.033 Univeristy of Aberdeen 86.0x 88.84 99.14 0.49 99.96 0.44 GCF_902460725.1 CABPUN01 1947 1995 1995 4 2 41 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460745.1 HMT-433 2010-36743 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-36743 13 2104638 40.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/745/GCA_902460745.1_2010-36743 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AW PRJEB22351 199 SAMEA5905259 2010-36743 Scaffold 2019-08-29T09:14:02.473 Univeristy of Aberdeen 71.0x 88.74 99.51 0 99.99 0 GCF_902460745.1 CABPUU01 1997 2045 0 4 2 41 1 Campylobacter_concisus_HMT_433_575 GCA_902460745.1 HMT-433 2010-36743 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2010-36743 13 2104638 40.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/745/GCA_902460745.1_2010-36743 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AW PRJEB22351 199 SAMEA5905259 2010-36743 Scaffold 2019-08-29T09:14:02.473 Univeristy of Aberdeen 71.0x 88.74 99.51 0 99.99 0 GCF_902460745.1 CABPUU01 1997 2045 0 4 2 41 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460755.1 HMT-433 2013-42088 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2013-42088 19 2051445 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/755/GCA_902460755.1_2013-42088 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJEB22351 199 SAMEA5905271 2013-42088 Scaffold 2019-08-29T09:14:02.783 Univeristy of Aberdeen 85.0x 88.51 99.14 0.86 99.99 0.17 GCF_902460755.1 CABPVT01 1957 1999 0 4 2 35 1 Campylobacter_concisus_HMT_433_575 GCA_902460755.1 HMT-433 2013-42088 Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 2013-42088 19 2051445 41.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/755/GCA_902460755.1_2013-42088 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_C PRJEB22351 199 SAMEA5905271 2013-42088 Scaffold 2019-08-29T09:14:02.783 Univeristy of Aberdeen 85.0x 88.51 99.14 0.86 99.99 0.17 GCF_902460755.1 CABPVT01 1957 1999 0 4 2 35 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460815.1 HMT-433 B124_Slimy-small Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 B124_Slimy-small 11 2090450 39.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/815/GCA_902460815.1_B124_Slimy-small d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJEB22351 199 SAMEA5905273 B124_Slimy-small Scaffold 2019-08-29T09:14:02.830 Univeristy of Aberdeen 75.0x 88.73 99.51 0 99.98 0.12 GCF_902460815.1 CABPVM01 2019 2068 2068 4 2 42 1 Campylobacter_concisus_HMT_433_575 GCA_902460815.1 HMT-433 B124_Slimy-small Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 B124_Slimy-small 11 2090450 39.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/815/GCA_902460815.1_B124_Slimy-small d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJEB22351 199 SAMEA5905273 B124_Slimy-small Scaffold 2019-08-29T09:14:02.830 Univeristy of Aberdeen 75.0x 88.73 99.51 0 99.98 0.12 GCF_902460815.1 CABPVM01 2019 2068 2068 4 2 42 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460825.1 HMT-433 B124_Slimy-large Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 B124_Slimy-large 143 2288052 42.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/825/GCA_902460825.1_B124_Slimy-large d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJEB22351 199 SAMEA5905277 B124_Slimy-large Scaffold 2019-08-29T09:14:02.926 Univeristy of Aberdeen 63.0x 88.77 98.15 0 99.9 0.24 GCF_902460825.1 CABPVN01 2075 2122 0 3 4 39 1 Campylobacter_concisus_HMT_433_575 GCA_902460825.1 HMT-433 B124_Slimy-large Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 B124_Slimy-large 143 2288052 42.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/825/GCA_902460825.1_B124_Slimy-large d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AB PRJEB22351 199 SAMEA5905277 B124_Slimy-large Scaffold 2019-08-29T09:14:02.926 Univeristy of Aberdeen 63.0x 88.77 98.15 0 99.9 0.24 GCF_902460825.1 CABPVN01 2075 2122 0 3 4 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902460845.1 HMT-575 2012-164712 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 2012-164712 16 2032479 38.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/845/GCA_902460845.1_2012-164712 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_X PRJEB22351 199 SAMEA5905266 2012-164712 Scaffold 2019-08-29T09:14:02.643 Univeristy of Aberdeen 32.0x 93.91 99.88 0.12 99.84 0.13 GCF_902460845.1 CABPVS01 2014 2063 0 4 2 42 1 Campylobacter_concisus_HMT_433_575 GCA_902460845.1 HMT-575 2012-164712 Named Cultivated Oral (Abundance: Medium) HMT-575 Campylobacter concisus clade-575 2012-164712 16 2032479 38.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/845/GCA_902460845.1_2012-164712 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_X PRJEB22351 199 SAMEA5905266 2012-164712 Scaffold 2019-08-29T09:14:02.643 Univeristy of Aberdeen 32.0x 93.91 99.88 0.12 99.84 0.13 GCF_902460845.1 CABPVS01 2014 2063 0 4 2 42 1 Campylobacter_concisus_clade_575_homd_HMT_575 GCA_902460915.1 HMT-433 B38_Tiny-mucoid Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 B38_Tiny-mucoid 5 2048069 40.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/915/GCA_902460915.1_B38_Tiny-mucoid d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJEB22351 199 SAMEA5905276 B38_Tiny-mucoid Scaffold 2019-08-29T09:14:02.910 Univeristy of Aberdeen 53.0x 88.67 99.51 0.12 99.94 0.04 GCF_902460915.1 CABPVE01 1967 2013 2013 4 2 39 1 Campylobacter_concisus_HMT_433_575 GCA_902460915.1 HMT-433 B38_Tiny-mucoid Named Cultivated Oral (Abundance: High) HMT-433 Campylobacter concisus clade-433 B38_Tiny-mucoid 5 2048069 40.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/460/915/GCA_902460915.1_B38_Tiny-mucoid d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A concisus_AU PRJEB22351 199 SAMEA5905276 B38_Tiny-mucoid Scaffold 2019-08-29T09:14:02.910 Univeristy of Aberdeen 53.0x 88.67 99.51 0.12 99.94 0.04 GCF_902460915.1 CABPVE01 1967 2013 2013 4 2 39 1 Campylobacter_concisus_clade_433_homd_HMT_433 GCA_902461015.1 HMT-542 MGYG-HGUT-00296 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius MGYG-HGUT-00296 38 1868390 35.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/015/GCA_902461015.1_UHGG-TPA_MGYG-HGUT-00296 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJEB33885 169971 SAMEA5849798 UHGG-TPA_MGYG-HGUT-00296 Contig 2019-08-07T10:17:16.976 Sweden human gut EMG 10.0x 100 0 99.72 0.03 GCF_902461015.1 CABPWA01 1644 1703 1703 36 2 20 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_902461075.1 HMT-560 MGYG-HGUT-00289 Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae MGYG-HGUT-00289 84 3001000 51.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/075/GCA_902461075.1_UHGG-TPA_MGYG-HGUT-00289 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJEB33885 159272 SAMEA5849791 UHGG-TPA_MGYG-HGUT-00289 Contig 2019-08-07T10:17:16.740 Sweden human gut EMG 10.0x 98.47 0 99.44 0 GCF_902461075.1 CABPVU01 2427 2480 2480 7 1 44 1 Segatella_buccae_homd_HMT_560 GCA_902461185.1 HMT-718 MGYG-HGUT-00317 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae MGYG-HGUT-00317 22 2151510 39.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/185/GCA_902461185.1_UHGG-TPA_MGYG-HGUT-00317 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp902461185 PRJEB33885 237779 SAMEA5849819 UHGG-TPA_MGYG-HGUT-00317 Contig 2019-08-07T10:17:17.646 Sweden human gut EMG 10.0x 98.98 0.23 100 0.15 GCF_902461185.1 CABPXD01 2003 2083 2083 26 5 48 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_902461255.1 HMT-681 MGYG-HGUT-00307 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 MGYG-HGUT-00307 186 2184222 59.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/255/GCA_902461255.1_UHGG-TPA_MGYG-HGUT-00307 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB33885 316088 SAMEA5849809 UHGG-TPA_MGYG-HGUT-00307 Contig 2019-08-07T10:17:17.350 Sweden human gut EMG 10.0x 94.67 0.67 94.38 0.21 GCF_902461255.1 CABPWP01 1755 1816 1816 12 3 45 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_902461255.1 HMT-681 MGYG-HGUT-00307 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 MGYG-HGUT-00307 186 2184222 59.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/255/GCA_902461255.1_UHGG-TPA_MGYG-HGUT-00307 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB33885 316088 SAMEA5849809 UHGG-TPA_MGYG-HGUT-00307 Contig 2019-08-07T10:17:17.350 Sweden human gut EMG 10.0x 94.67 0.67 94.38 0.21 GCF_902461255.1 CABPWP01 1755 1816 1816 12 3 45 1 Rothia_mucilaginosa_HMT_147_681 GCA_902465605.1 HMT-562 MGYG-HGUT-00760 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-562 Hoylesella buccalis MGYG-HGUT-00760 31 2818339 45.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/465/605/GCA_902465605.1_UHGG-TPA_MGYG-HGUT-00760 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp902465605 PRJEB33885 159272 SAMEA5850262 UHGG-TPA_MGYG-HGUT-00760 Contig 2019-08-07T10:17:32.350 Bangladesh human gut EMG 10.0x 99.29 0 99.99 0.01 CABQNT01 2423 2487 2487 16 0 47 1 Hoylesella_buccalis_homd_HMT_562 GCA_902468745.1 HMT-780 MGYG-HGUT-01066 Unnamed Cultivated Oral (Abundance: High) HMT-780 Veillonella sp. HMT-780 MGYG-HGUT-01066 38 1778132 39.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/468/745/GCA_902468745.1_UHGG-TPA_MGYG-HGUT-01066 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp001553345 PRJEB33885 159268 SAMEA5850569 UHGG-TPA_MGYG-HGUT-01066 Contig 2019-08-07T10:17:41.913 Sweden human gut EMG 10.0x 99.88 0.02 99.95 0.04 CABQZT01 1550 1612 1612 21 2 38 1 Veillonella_sp_HMT_780_homd_HMT_780 GCA_902468925.1 HMT-718 MGYG-HGUT-01088 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae MGYG-HGUT-01088 21 1866538 39.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/468/925/GCA_902468925.1_UHGG-TPA_MGYG-HGUT-01088 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp001811025 PRJEB33885 237779 SAMEA5850591 UHGG-TPA_MGYG-HGUT-01088 Contig 2019-08-07T10:17:42.540 Sweden human gut EMG 10.0x 99.89 0 100 0 GCF_902468925.1 CABRAL01 1764 1835 1835 22 4 44 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_902469835.1 HMT-370 MGYG-HGUT-01172 Unnamed Cultivated Oral (Abundance: Scarce) HMT-370 Fusobacterium sp. HMT-370 MGYG-HGUT-01172 97 2065216 27.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/469/835/GCA_902469835.1_UHGG-TPA_MGYG-HGUT-01172 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium sp000235465 PRJEB33885 159267 SAMEA5850675 UHGG-TPA_MGYG-HGUT-01172 Contig 2019-08-07T10:17:45.116 Austria human gut EMG 10.0x 98.88 0 99.99 0.01 GCF_902469835.1 CABRED01 1926 1988 1988 19 0 42 1 Fusobacterium_sp_HMT_370_homd_HMT_370 GCA_902470245.1 HMT-785 MGYG-HGUT-01209 Named Cultivated Vaginal (Abundance: Medium) HMT-785 Porphyromonas uenonis MGYG-HGUT-01209 45 2042909 53.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/470/245/GCA_902470245.1_UHGG-TPA_MGYG-HGUT-01209 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas uenonis_A PRJEB33885 159274 SAMEA5850712 UHGG-TPA_MGYG-HGUT-01209 Contig 2019-08-07T10:17:46.226 Austria human gut EMG 10.0x 99.29 0.31 99.49 0.08 GCF_902470245.1 CABRFO01 1660 1715 1715 11 0 43 1 Porphyromonas_uenonis_homd_HMT_785 GCA_902470875.1 HMT-357 MGYG-HGUT-01589 Named Cultivated Oral (Abundance: Scarce) HMT-357 Pyramidobacter piscolens MGYG-HGUT-01589 38 2462654 60.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/470/875/GCA_902470875.1_UHGG-TPA_MGYG-HGUT-01589 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter;s__Pyramidobacter piscolens PRJEB33885 1623495 SAMEA5851092 UHGG-TPA_MGYG-HGUT-01589 Contig 2019-08-07T10:17:57.400 China human gut EMG 10.0x 100 0 98.95 0.46 GCF_902470875.1 CABRIA01 2230 2301 2301 19 2 49 1 Pyramidobacter_piscolens_homd_HMT_357 GCA_902471235.1 HMT-736 MGYG-HGUT-01613 Named Cultivated Oral (Abundance: Medium) HMT-736 Dialister pneumosintes MGYG-HGUT-01613 11 1269637 35.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/471/235/GCA_902471235.1_UHGG-TPA_MGYG-HGUT-01613 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Allisonella;s__Allisonella pneumosinta PRJEB33885 278064 SAMEA5851116 UHGG-TPA_MGYG-HGUT-01613 Contig 2019-08-07T10:17:58.070 China human gut EMG 10.0x 96.11 0 99.03 0.4 CABRJJ01 1222 1290 1290 17 1 49 1 Dialister_pneumosintes_homd_HMT_736 GCA_902472395.1 HMT-121 MGYG-HGUT-01762 Named Cultivated Oral (Abundance: Medium) HMT-121 Anaeroglobus geminatus MGYG-HGUT-01762 28 1764081 49.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/472/395/GCA_902472395.1_UHGG-TPA_MGYG-HGUT-01762 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus geminatus PRJEB33885 413898 SAMEA5851266 UHGG-TPA_MGYG-HGUT-01762 Contig 2019-08-07T10:18:03.350 Estonia human gut EMG 10.0x 98.8 0.07 98.6 0.13 CABRNW01 1654 1725 1725 25 1 44 1 Anaeroglobus_geminatus_homd_HMT_121 GCA_902474955.1 HMT-124 MGYG-HGUT-02022 Named Cultivated Oral (Abundance: Low) HMT-124 Selenomonas artemidis MGYG-HGUT-02022 69 2160973 57.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/474/955/GCA_902474955.1_UHGG-TPA_MGYG-HGUT-02022 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda artemidis PRJEB33885 159275 SAMEA5851526 UHGG-TPA_MGYG-HGUT-02022 Contig 2019-08-07T10:18:11.946 Spain human gut EMG 10.0x 98.06 0.05 99.63 0.18 GCF_902474955.1 CABRXN01 1977 2044 2044 17 1 48 1 Selenomonas_artemidis_homd_HMT_124 GCA_902477875.1 HMT-718 MGYG-HGUT-02634 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae MGYG-HGUT-02634 16 1948050 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/477/875/GCA_902477875.1_UHGG-TPA_MGYG-HGUT-02634 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_R PRJEB33885 237779 SAMEA5852139 UHGG-TPA_MGYG-HGUT-02634 Contig 2019-08-07T10:18:31.370 China human gut EMG 10.0x 99.66 0.06 100 0 GCF_902477875.1 CABSIV01 1855 1927 1927 25 1 45 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_902477885.1 HMT-082 MGYG-HGUT-02638 Named Cultivated Oral (Abundance: Medium) HMT-082 Lachnoanaerobaculum orale MGYG-HGUT-02638 198 2571408 37.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/477/885/GCA_902477885.1_UHGG-TPA_MGYG-HGUT-02638 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum orale PRJEB33885 1662275 SAMEA5852143 UHGG-TPA_MGYG-HGUT-02638 Contig 2019-08-07T10:18:31.476 China human gut EMG 10.0x 98.04 0 89.22 1.07 CABSIY01 2356 2410 2410 14 0 39 1 Lachnoanaerobaculum_orale_homd_HMT_082 GCA_902477965.1 HMT-036 MGYG-HGUT-02639 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 MGYG-HGUT-02639 97 1663723 38.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/477/965/GCA_902477965.1_UHGG-TPA_MGYG-HGUT-02639 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJEB33885 237779 SAMEA5852144 UHGG-TPA_MGYG-HGUT-02639 Contig 2019-08-07T10:18:31.510 China human gut EMG 10.0x 94.2 0.98 90.33 1.29 GCF_902477965.1 CABSJF01 1552 1600 1600 22 1 25 0 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_902479665.1 HMT-294 MGYG-HGUT-02815 Named** Cultivated Vaginal (Abundance: Scarce) HMT-294 Anaerococcus vaginimassiliensis MGYG-HGUT-02815 18 1697277 32.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/479/665/GCA_902479665.1_UHGG-TPA_MGYG-HGUT-02815 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus vaginimassiliensis PRJEB33885 293428 SAMEA5852320 UHGG-TPA_MGYG-HGUT-02815 Contig 2019-08-07T10:18:36.870 USA human gut EMG 10.0x 99.39 0 97.48 0.11 GCF_902479665.1 CABSPS01 1569 0 0 23 0 17 1 Anaerococcus_vaginimassiliensis_homd_HMT_294 GCA_902479685.1 HMT-728 MGYG-HGUT-02822 Named Cultivated Oral (Abundance: Medium) HMT-728 Streptococcus peroris MGYG-HGUT-02822 25 976909 38.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/479/685/GCA_902479685.1_UHGG-TPA_MGYG-HGUT-02822 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus peroris PRJEB33885 83427 SAMEA5852327 UHGG-TPA_MGYG-HGUT-02822 Contig 2019-08-07T10:18:37.086 USA human gut EMG 10.0x 56.9 0 56.11 0.88 CABSPY01 925 950 950 16 0 8 1 Streptococcus_peroris_homd_HMT_728 GCA_902479845.1 HMT-421 MGYG-HGUT-02819 Named Cultivated Oral (Abundance: Medium) HMT-421 Veillonella tobetsuensis MGYG-HGUT-02819 15 1971073 38.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/479/845/GCA_902479845.1_UHGG-TPA_MGYG-HGUT-02819 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella tobetsuensis PRJEB33885 159268 SAMEA5852324 UHGG-TPA_MGYG-HGUT-02819 Contig 2019-08-07T10:18:36.993 USA human gut EMG 10.0x 100 0 100 0.11 GCF_902479845.1 CABSQG01 1804 1867 1867 18 0 44 1 Veillonella_tobetsuensis_homd_HMT_421 GCA_902480415.1 HMT-738 MGYG-HGUT-02892 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-738 Anaerococcus prevotii MGYG-HGUT-02892 227 1231601 37.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/480/415/GCA_902480415.1_UHGG-TPA_MGYG-HGUT-02892 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus prevotii PRJEB33885 293428 SAMEA5852397 UHGG-TPA_MGYG-HGUT-02892 Contig 2019-08-07T10:18:39.196 USA human gut EMG 10.0x 68.37 0 74.52 0.48 CABSSR01 1068 1096 1096 20 0 8 0 Anaerococcus_prevotii_homd_HMT_738 GCA_902480515.1 HMT-946 MGYG-HGUT-02898 Named Cultivated Oral (Abundance: Medium) HMT-946 Haemophilus pittmaniae MGYG-HGUT-02898 17 2077686 42.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/480/515/GCA_902480515.1_UHGG-TPA_MGYG-HGUT-02898 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D pittmaniae PRJEB33885 237779 SAMEA5852403 UHGG-TPA_MGYG-HGUT-02898 Contig 2019-08-07T10:18:39.370 USA human gut EMG 10.0x 97.54 0.34 99.97 0.13 GCF_902480515.1 CABSSX01 1943 2018 2018 34 3 37 1 Haemophilus_pittmaniae_homd_HMT_946 GCA_902480595.1 HMT-723 MGYG-HGUT-02908 Named Cultivated Oral (Abundance: High) HMT-723 Lancefieldella parvula MGYG-HGUT-02908 13 1338544 45.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/480/595/GCA_902480595.1_UHGG-TPA_MGYG-HGUT-02908 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__Lancefieldella parvula PRJEB33885 274587 SAMEA5852413 UHGG-TPA_MGYG-HGUT-02908 Contig 2019-08-07T10:18:39.650 USA human gut EMG 10.0x 93.55 0 88.54 1.15 CABSTI01 1198 1246 1246 8 2 38 0 Lancefieldella_parvula_homd_HMT_723 GCA_902480615.1 HMT-602 MGYG-HGUT-02910 Named Cultivated Oral (Abundance: Scarce) HMT-602 Slackia exigua MGYG-HGUT-02910 33 1892476 62.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/480/615/GCA_902480615.1_UHGG-TPA_MGYG-HGUT-02910 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia;s__Slackia exigua PRJEB33885 665903 SAMEA5852415 UHGG-TPA_MGYG-HGUT-02910 Contig 2019-08-07T10:18:39.773 USA human gut EMG 10.0x 100 0 99.88 2.39 GCF_902480615.1 CABSTJ01 1631 1682 1682 10 0 40 1 Slackia_exigua_homd_HMT_602 GCA_902480825.1 HMT-866 MGYG-HGUT-02941 Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii MGYG-HGUT-02941 86 1921862 57.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/480/825/GCA_902480825.1_UHGG-TPA_MGYG-HGUT-02941 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJEB33885 249061 SAMEA5852446 UHGG-TPA_MGYG-HGUT-02941 Contig 2019-08-07T10:18:40.820 USA human gut EMG 10.0x 92.92 1.95 87.95 2.34 CABSUF01 1567 1615 1615 9 2 35 2 Actinomyces_graevenitzii_homd_HMT_866 GCA_902481125.1 HMT-784 MGYG-HGUT-02959 Named Cultivated Nasal (Abundance: High) HMT-784 Peptoniphilus lacydonensis MGYG-HGUT-02959 12 1622414 29.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/481/125/GCA_902481125.1_UHGG-TPA_MGYG-HGUT-02959 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A lacydonensis PRJEB33885 254354 SAMEA5852464 UHGG-TPA_MGYG-HGUT-02959 Contig 2019-08-07T10:18:41.370 USA human gut EMG 10.0x 98.95 0 99.83 0.22 GCF_902481125.1 CABSVA01 1553 1603 1603 26 1 22 1 Peptoniphilus_lacydonensis_homd_HMT_784 GCA_902481245.1 HMT-415 MGYG-HGUT-02982 Named Cultivated Oral (Abundance: Medium) HMT-415 Streptococcus rubneri MGYG-HGUT-02982 197 1039311 42.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/481/245/GCA_902481245.1_UHGG-TPA_MGYG-HGUT-02982 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus rubneri PRJEB33885 83427 SAMEA5852487 UHGG-TPA_MGYG-HGUT-02982 Contig 2019-08-07T10:18:42.070 USA human gut EMG 10.0x 52.59 0 55.93 0.23 CABSWF01 952 978 978 16 0 10 0 Streptococcus_rubneri_homd_HMT_415 GCA_902481595.1 HMT-419 MGYG-HGUT-03001 Named Cultivated Oral (Abundance: Medium) HMT-419 Stomatobaculum longum MGYG-HGUT-03001 24 1905072 56.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/481/595/GCA_902481595.1_UHGG-TPA_MGYG-HGUT-03001 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Moryella;s__Moryella longum PRJEB33885 1662277 SAMEA5852506 UHGG-TPA_MGYG-HGUT-03001 Contig 2019-08-07T10:18:42.726 USA human gut EMG 10.0x 92.72 0.63 94.76 0.35 GCF_902481595.1 CABSWU01 1750 1799 1799 10 0 38 1 Stomatobaculum_longum_homd_HMT_419 GCA_902481605.1 HMT-457 MGYG-HGUT-03013 Named Cultivated Oral (Abundance: High) HMT-457 Oribacterium sinus MGYG-HGUT-03013 121 2494431 43.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/481/605/GCA_902481605.1_UHGG-TPA_MGYG-HGUT-03013 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium sinus PRJEB33885 462198 SAMEA5852518 UHGG-TPA_MGYG-HGUT-03013 Contig 2019-08-07T10:18:43.120 USA human gut EMG 10.0x 95.12 0.32 95.83 0.08 GCF_902481605.1 CABSXI01 2110 2161 2161 16 1 33 1 Oribacterium_sinus_homd_HMT_457 GCA_902481625.1 HMT-866 MGYG-HGUT-03014 Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii MGYG-HGUT-03014 66 1770918 58.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/481/625/GCA_902481625.1_UHGG-TPA_MGYG-HGUT-03014 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJEB33885 249061 SAMEA5852519 UHGG-TPA_MGYG-HGUT-03014 Contig 2019-08-07T10:18:43.150 USA human gut EMG 10.0x 91.9 0.55 87.59 0.48 CABSXG01 1447 1496 1496 8 1 39 1 Actinomyces_graevenitzii_homd_HMT_866 GCA_902482565.1 HMT-718 MGYG-HGUT-03118 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae MGYG-HGUT-03118 24 1969878 39.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/482/565/GCA_902482565.1_UHGG-TPA_MGYG-HGUT-03118 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp030405845 PRJEB33885 237779 SAMEA5852623 UHGG-TPA_MGYG-HGUT-03118 Contig 2019-08-07T10:18:46.370 USA human gut EMG 10.0x 99.66 0.03 100 0 GCF_902482565.1 CABSZY01 1884 1949 1949 29 0 35 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_902482725.1 HMT-700 MGYG-HGUT-03119 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea MGYG-HGUT-03119 112 2451559 39.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/482/725/GCA_902482725.1_UHGG-TPA_MGYG-HGUT-03119 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJEB33885 159273 SAMEA5852624 UHGG-TPA_MGYG-HGUT-03119 Contig 2019-08-07T10:18:46.400 USA human gut EMG 10.0x 96.67 0 99.09 0.12 GCF_902482725.1 CABTAG01 2053 2095 2095 5 1 35 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_902482735.1 HMT-783 MGYG-HGUT-03125 Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii MGYG-HGUT-03125 56 2294743 58.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/482/735/GCA_902482735.1_UHGG-TPA_MGYG-HGUT-03125 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJEB33885 159447 SAMEA5852630 UHGG-TPA_MGYG-HGUT-03125 Contig 2019-08-07T10:18:46.570 USA human gut EMG 10.0x 97.72 0.06 99.98 0.05 GCF_902482735.1 CABTAK01 2167 2222 2222 10 0 45 0 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_902482765.1 HMT-017 MGYG-HGUT-03129 Named Cultivated Skin (Abundance: High) HMT-017 Anaerococcus octavius MGYG-HGUT-03129 39 1715963 30.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/482/765/GCA_902482765.1_UHGG-TPA_MGYG-HGUT-03129 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus octavius PRJEB33885 293428 SAMEA5852634 UHGG-TPA_MGYG-HGUT-03129 Contig 2019-08-07T10:18:46.680 USA human gut EMG 10.0x 98.23 0.91 92.52 0.82 GCF_902482765.1 CABTAM01 1606 1647 1647 26 0 14 1 Anaerococcus_octavius_homd_HMT_017 GCA_902482785.1 HMT-718 MGYG-HGUT-03126 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae MGYG-HGUT-03126 29 1973834 39.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/482/785/GCA_902482785.1_UHGG-TPA_MGYG-HGUT-03126 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_AD PRJEB33885 237779 SAMEA5852631 UHGG-TPA_MGYG-HGUT-03126 Contig 2019-08-07T10:18:46.603 USA human gut EMG 10.0x 99.89 0 100 0.06 GCF_902482785.1 CABTAN01 1856 1925 1925 25 1 42 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_902482805.1 HMT-114 MGYG-HGUT-03135 Named Cultivated Skin (Abundance: High) HMT-114 Cutibacterium granulosum MGYG-HGUT-03135 16 2072889 64.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/482/805/GCA_902482805.1_UHGG-TPA_MGYG-HGUT-03135 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium granulosum PRJEB33885 1912223 SAMEA5852640 UHGG-TPA_MGYG-HGUT-03135 Contig 2019-08-07T10:18:46.870 USA human gut EMG 10.0x 98.79 0 97.04 0.08 GCF_902482805.1 CABTAS01 1734 1802 1802 15 3 49 1 Cutibacterium_granulosum_homd_HMT_114 GCA_902483045.1 HMT-291 MGYG-HGUT-03152 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola MGYG-HGUT-03152 27 2774939 50.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/483/045/GCA_902483045.1_UHGG-TPA_MGYG-HGUT-03152 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJEB33885 159272 SAMEA5852657 UHGG-TPA_MGYG-HGUT-03152 Contig 2019-08-07T10:18:47.480 USA human gut EMG 10.0x 97.64 0 98.4 0.28 GCF_902483045.1 CABTBH01 2237 2286 2286 8 1 39 1 Prevotella_denticola_homd_HMT_291 GCA_902483375.1 HMT-158 MGYG-HGUT-03190 Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae MGYG-HGUT-03190 19 2094981 39.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/483/375/GCA_902483375.1_UHGG-TPA_MGYG-HGUT-03190 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJEB33885 159268 SAMEA5852696 UHGG-TPA_MGYG-HGUT-03190 Contig 2019-08-07T10:18:49.070 USA human gut EMG 10.0x 100 0 99.98 0.18 GCF_902483375.1 CABTCX01 1888 1957 1957 23 2 43 1 Veillonella_rogosae_homd_HMT_158 GCA_902483385.1 HMT-160 MGYG-HGUT-03188 Named Cultivated Oral (Abundance: High) HMT-160 Veillonella dispar MGYG-HGUT-03188 12 1998872 38.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/483/385/GCA_902483385.1_UHGG-TPA_MGYG-HGUT-03188 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella dispar PRJEB33885 159268 SAMEA5852694 UHGG-TPA_MGYG-HGUT-03188 Contig 2019-08-07T10:18:49.010 USA human gut EMG 10.0x 100 0 99.99 0.05 GCF_902483385.1 CABTCQ01 1787 1849 1849 18 0 43 1 Veillonella_dispar_homd_HMT_160 GCA_902483495.1 HMT-779 MGYG-HGUT-03197 Unnamed Cultivated Oral (Abundance: Medium) HMT-779 Veillonella sp. HMT-779 MGYG-HGUT-03197 52 1901086 40.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/483/495/GCA_902483495.1_UHGG-TPA_MGYG-HGUT-03197 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp003999875 PRJEB33885 159268 SAMEA5852703 UHGG-TPA_MGYG-HGUT-03197 Contig 2019-08-07T10:18:49.273 USA human gut EMG 10.0x 99.88 0 99.86 0.04 CABTDD01 1646 1720 1720 30 2 41 1 Veillonella_sp_HMT_779_homd_HMT_779 GCA_902484395.1 HMT-469 MGYG-HGUT-03287 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica MGYG-HGUT-03287 145 3259243 40.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/484/395/GCA_902484395.1_UHGG-TPA_MGYG-HGUT-03287 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB33885 159272 SAMEA5852793 UHGG-TPA_MGYG-HGUT-03287 Contig 2019-08-07T10:18:52.070 USA human gut EMG 10.0x 96.85 0.34 99.81 0.1 GCF_902484395.1 CABTGN01 2721 2779 2779 15 0 42 1 Prevotella_melaninogenica_homd_HMT_469 GCA_902485085.1 HMT-865 MGYG-HGUT-03358 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-865 Kluyvera ascorbata MGYG-HGUT-03358 196 4968008 54.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/485/085/GCA_902485085.1_UHGG-TPA_MGYG-HGUT-03358 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera;s__Kluyvera ascorbata PRJEB33885 286549 SAMEA5852864 UHGG-TPA_MGYG-HGUT-03358 Contig 2019-08-07T10:18:54.230 USA human gut EMG 10.0x 98.11 0.83 96.41 1.51 GCF_902485085.1 CABTJS01 4651 4864 4864 132 5 76 0 Kluyvera_ascorbata_homd_HMT_865 GCA_902485115.1 HMT-556 MGYG-HGUT-03374 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-556 Prevotella bivia MGYG-HGUT-03374 73 2286602 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/485/115/GCA_902485115.1_UHGG-TPA_MGYG-HGUT-03374 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella bivia PRJEB33885 159272 SAMEA5852880 UHGG-TPA_MGYG-HGUT-03374 Contig 2019-08-07T10:18:54.730 USA human gut EMG 10.0x 99.66 0 99.99 0.07 GCF_902485115.1 CABTJR01 1905 1960 1960 9 0 45 1 Prevotella_bivia_homd_HMT_556 GCA_902485225.1 HMT-837 MGYG-HGUT-03376 Named Cultivated Vaginal (Abundance: Medium) HMT-837 Sneathia sanguinegens MGYG-HGUT-03376 19 1245505 26.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/485/225/GCA_902485225.1_UHGG-TPA_MGYG-HGUT-03376 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia;s__Sneathia sanguinegens PRJEB33885 278067 SAMEA5852882 UHGG-TPA_MGYG-HGUT-03376 Contig 2019-08-07T10:18:54.806 USA human gut EMG 10.0x 98.88 0.16 97.48 0.38 GCF_902485225.1 CABTJV01 1171 1214 1214 9 0 33 1 Sneathia_sanguinegens_homd_HMT_837 GCA_902485235.1 HMT-072 MGYG-HGUT-03375 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-072 Corynebacterium striatum MGYG-HGUT-03375 57 2788808 59.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/485/235/GCA_902485235.1_UHGG-TPA_MGYG-HGUT-03375 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium striatum PRJEB33885 159447 SAMEA5852881 UHGG-TPA_MGYG-HGUT-03375 Contig 2019-08-07T10:18:54.760 USA human gut EMG 10.0x 99.23 0.53 100 0.02 GCF_902485235.1 CABTJU01 2605 2674 2674 9 3 56 1 Corynebacterium_striatum_homd_HMT_072 GCA_902485275.1 HMT-101 MGYG-HGUT-03388 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava MGYG-HGUT-03388 16 2136685 49.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/485/275/GCA_902485275.1_UHGG-TPA_MGYG-HGUT-03388 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJEB33885 237778 SAMEA5852894 UHGG-TPA_MGYG-HGUT-03388 Contig 2019-08-07T10:18:55.213 USA human gut EMG 10.0x 99.25 0 99.52 0.02 GCF_902485275.1 CABTJX01 2027 2100 2100 19 3 50 1 Neisseria_perflava_homd_HMT_101 GCA_902485365.1 HMT-083 MGYG-HGUT-03381 Unnamed Cultivated Oral (Abundance: Medium) HMT-083 Lachnoanaerobaculum sp. HMT-083 MGYG-HGUT-03381 266 2661892 36.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/485/365/GCA_902485365.1_UHGG-TPA_MGYG-HGUT-03381 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum sp000296385 PRJEB33885 1662275 SAMEA5852887 UHGG-TPA_MGYG-HGUT-03381 Contig 2019-08-07T10:18:54.946 USA human gut EMG 10.0x 96.04 0.11 96.88 1.06 CABTKJ01 2458 2513 2513 16 1 37 1 Lachnoanaerobaculum_sp_HMT_083_homd_HMT_083 GCA_902488485.1 HMT-777 MGYG-HGUT-03722 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-777 Jonquetella anthropi MGYG-HGUT-03722 87 1614807 60.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/488/485/GCA_902488485.1_UHGG-TPA_MGYG-HGUT-03722 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Jonquetella;s__Jonquetella anthropi PRJEB33885 905009 SAMEA5853228 UHGG-TPA_MGYG-HGUT-03722 Contig 2019-08-07T10:19:06.103 not provided human gut EMG 10.0x 98.31 0 99 0.42 CABTWI01 1522 1577 1577 12 0 42 1 Jonquetella_anthropi_homd_HMT_777 GCA_902488615.1 HMT-929 MGYG-HGUT-03738 Unnamed Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-929 Peptoniphilaceae [G3] bacterium HMT-929 MGYG-HGUT-03738 84 1531797 34.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/488/615/GCA_902488615.1_UHGG-TPA_MGYG-HGUT-03738 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria;s__Fenollaria massiliensis PRJEB33885 172733 SAMEA5853244 UHGG-TPA_MGYG-HGUT-03738 Contig 2019-08-07T10:19:07.026 not provided human gut EMG 10.0x 97.55 0 99.79 0.13 CABTXA01 1416 1457 1457 17 0 23 1 Fenollaria_massiliensis_homd_HMT_929 GCA_902488655.1 HMT-071 MGYG-HGUT-03739 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus MGYG-HGUT-03739 98 1855725 41.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/488/655/GCA_902488655.1_UHGG-TPA_MGYG-HGUT-03739 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_E PRJEB33885 83427 SAMEA5853245 UHGG-TPA_MGYG-HGUT-03739 Contig 2019-08-07T10:19:07.056 not provided human gut EMG 10.0x 98.38 1.73 95.1 1.47 GCF_902488655.1 CABTXC01 1787 1848 1848 40 0 20 1 Streptococcus_oralis_subsp_tigurinus_homd_HMT_071 GCA_902488655.1 HMT-071 MGYG-HGUT-03739 Named Cultivated Oral (Abundance: Scarce) HMT-071 Streptococcus oralis subsp. tigurinus MGYG-HGUT-03739 98 1855725 41.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/488/655/GCA_902488655.1_UHGG-TPA_MGYG-HGUT-03739 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_E PRJEB33885 83427 SAMEA5853245 UHGG-TPA_MGYG-HGUT-03739 Contig 2019-08-07T10:19:07.056 not provided human gut EMG 10.0x 98.38 1.73 95.1 1.47 GCF_902488655.1 CABTXC01 1787 1848 1848 40 0 20 1 Streptococcus_oralis_HMT_071_398_707 GCA_902488665.1 HMT-562 MGYG-HGUT-03742 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Medium) HMT-562 Hoylesella buccalis MGYG-HGUT-03742 108 2540681 46.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/488/665/GCA_902488665.1_UHGG-TPA_MGYG-HGUT-03742 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp902488665 PRJEB33885 159272 SAMEA5853248 UHGG-TPA_MGYG-HGUT-03742 Contig 2019-08-07T10:19:07.166 not provided human gut EMG 10.0x 97.09 0.04 95.01 0.63 CABTXD01 2111 2157 2157 5 1 40 0 Hoylesella_buccalis_homd_HMT_562 GCA_902488705.1 HMT-559 MGYG-HGUT-03734 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-559 Afipia broomeae MGYG-HGUT-03734 233 5238503 61.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/488/705/GCA_902488705.1_UHGG-TPA_MGYG-HGUT-03734 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia;s__Afipia broomeae PRJEB33885 218203 SAMEA5853240 UHGG-TPA_MGYG-HGUT-03734 Contig 2019-08-07T10:19:06.870 not provided human gut EMG 10.0x 97.53 1.58 98.31 2.53 CABTXE01 5080 5164 5164 29 2 52 1 Afipia_broomeae_homd_HMT_559 GCA_902489065.1 HMT-859 MGYG-HGUT-03780 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-859 Anaerococcus lactolyticus MGYG-HGUT-03780 150 1433043 35.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/489/065/GCA_902489065.1_UHGG-TPA_MGYG-HGUT-03780 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus;s__Anaerococcus lactolyticus PRJEB33885 293428 SAMEA5853286 UHGG-TPA_MGYG-HGUT-03780 Contig 2019-08-07T10:19:08.340 not provided human gut EMG 10.0x 68.74 1.52 65.59 3.1 CABTYQ01 1335 1370 1370 19 0 16 0 Anaerococcus_lactolyticus_homd_HMT_859 GCA_902489165.1 HMT-785 MGYG-HGUT-03790 Named Cultivated Vaginal (Abundance: Medium) HMT-785 Porphyromonas uenonis MGYG-HGUT-03790 153 1715041 54.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/489/165/GCA_902489165.1_UHGG-TPA_MGYG-HGUT-03790 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas uenonis PRJEB33885 159274 SAMEA5853296 UHGG-TPA_MGYG-HGUT-03790 Contig 2019-08-07T10:19:08.650 not provided human gut EMG 10.0x 94.89 0 85.8 0.07 GCF_902489165.1 CABTYU01 1332 1380 1380 10 1 36 1 Porphyromonas_uenonis_homd_HMT_785 GCA_902489385.1 HMT-031 MGYG-HGUT-03811 Named Cultivated Nasal (Abundance: Scarce) HMT-031 Corynebacterium amycolatum MGYG-HGUT-03811 220 2349574 58.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/489/385/GCA_902489385.1_UHGG-TPA_MGYG-HGUT-03811 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium amycolatum PRJEB33885 159447 SAMEA5853317 UHGG-TPA_MGYG-HGUT-03811 Contig 2019-08-07T10:19:09.276 not provided human gut EMG 10.0x 93.45 0.89 94.9 0.18 GCF_902489385.1 CABTZY01 2111 2167 2167 12 1 43 0 Corynebacterium_amycolatum_homd_HMT_031 GCA_902490035.1 HMT-311 MGYG-HGUT-03878 Named Cultivated Oral (Abundance: High) HMT-311 Segatella oris MGYG-HGUT-03878 214 2959023 43.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/490/035/GCA_902490035.1_UHGG-TPA_MGYG-HGUT-03878 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oris PRJEB33885 159272 SAMEA5853384 UHGG-TPA_MGYG-HGUT-03878 Contig 2019-08-07T10:19:11.493 USA human gut EMG 10.0x 95.68 0.45 92.86 0.13 CABUCK01 2485 2518 2518 8 0 24 1 Segatella_oris_homd_HMT_311 GCA_902490215.1 HMT-794 MGYG-HGUT-03893 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-794 Hallella multisaccharivorax MGYG-HGUT-03893 133 2702422 48.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/490/215/GCA_902490215.1_UHGG-TPA_MGYG-HGUT-03893 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella multisaccharivorax PRJEB33885 159272 SAMEA5853399 UHGG-TPA_MGYG-HGUT-03893 Contig 2019-08-07T10:19:11.933 USA human gut EMG 10.0x 95.8 0.52 88.78 0.04 CABUCY01 2245 2295 2295 12 2 35 1 Hallella_multisaccharivorax_homd_HMT_794 GCA_902490295.1 HMT-160 MGYG-HGUT-03902 Named Cultivated Oral (Abundance: High) HMT-160 Veillonella dispar MGYG-HGUT-03902 28 2119735 38.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/490/295/GCA_902490295.1_UHGG-TPA_MGYG-HGUT-03902 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella dispar PRJEB33885 159268 SAMEA5853408 UHGG-TPA_MGYG-HGUT-03902 Contig 2019-08-07T10:19:12.243 China human gut EMG 10.0x 100 0 99.99 0.1 GCF_902490295.1 CABUDE01 1935 1995 1995 22 0 37 1 Veillonella_dispar_homd_HMT_160 GCA_902492845.1 HMT-118 MGYG-HGUT-04158 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus MGYG-HGUT-04158 24 1763641 45.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/492/845/GCA_902492845.1_UHGG-TPA_MGYG-HGUT-04158 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJEB33885 278064 SAMEA5853665 UHGG-TPA_MGYG-HGUT-04158 Contig 2019-08-07T10:19:20.103 United Kingdom human gut EMG 10.0x 97.47 0 99.93 0.26 GCF_902492845.1 CABUMW01 1678 1762 1762 34 0 49 1 Dialister_invisus_homd_HMT_118 GCA_902494015.1 HMT-534 MGYG-HGUT-04316 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens MGYG-HGUT-04316 91 1849304 37.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/494/015/GCA_902494015.1_UHGG-TPA_MGYG-HGUT-04316 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJEB33885 316089 SAMEA5853823 UHGG-TPA_MGYG-HGUT-04316 Contig 2019-08-07T10:19:26.790 not provided human gut EMG 10.0x 98.18 0.18 99.15 0.22 GCF_902494015.1 CABURS01 1724 1774 1774 30 2 17 1 Granulicatella_adiacens_homd_HMT_534 GCA_902494025.1 HMT-576 MGYG-HGUT-04321 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus MGYG-HGUT-04321 34 1789116 37.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/494/025/GCA_902494025.1_UHGG-TPA_MGYG-HGUT-04321 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJEB33885 83427 SAMEA5853828 UHGG-TPA_MGYG-HGUT-04321 Contig 2019-08-07T10:19:26.933 not provided human gut EMG 10.0x 96.87 0 99.63 0.13 GCF_902494025.1 CABURP01 1789 1848 1848 35 0 23 1 Streptococcus_constellatus_homd_HMT_576 GCA_902494125.1 HMT-762 MGYG-HGUT-04313 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis MGYG-HGUT-04313 12 1916258 42.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/494/125/GCA_902494125.1_UHGG-TPA_MGYG-HGUT-04313 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_B PRJEB33885 470564 SAMEA5853820 UHGG-TPA_MGYG-HGUT-04313 Contig 2019-08-07T10:19:26.700 not provided human gut EMG 10.0x 99.66 0 99.97 0.03 GCF_902494125.1 CABURO01 1770 1918 1918 97 3 47 1 Aggregatibacter_segnis_homd_HMT_762 GCA_902496035.1 HMT-844 MGYG-HGUT-04516 Named Cultivated Vaginal (Abundance: Medium) HMT-844 Sneathia vaginalis MGYG-HGUT-04516 40 1228854 28.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/496/035/GCA_902496035.1_UHGG-TPA_MGYG-HGUT-04516 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia;s__Sneathia vaginalis PRJEB33885 278067 SAMEA5854023 UHGG-TPA_MGYG-HGUT-04516 Contig 2019-08-07T10:19:33.026 not provided human gut EMG 10.0x 98.88 0 99.37 0.77 GCF_902496035.1 CABUZT01 1154 1197 1197 8 0 34 1 Sneathia_vaginalis_homd_HMT_844 GCA_902496485.1 HMT-046 MGYG-HGUT-04562 Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum MGYG-HGUT-04562 45 1790867 30.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/496/485/GCA_902496485.1_UHGG-TPA_MGYG-HGUT-04562 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJEB33885 157472 SAMEA5854069 UHGG-TPA_MGYG-HGUT-04562 Contig 2019-08-07T10:19:34.450 not provided human gut EMG 10.0x 94.35 0.29 99.96 0.15 CABVAT01 1766 1804 1804 24 0 13 1 Gemella_morbillorum_homd_HMT_046 GCA_902496525.1 HMT-112 MGYG-HGUT-04565 Named Cultivated Oral (Abundance: Medium) HMT-112 Peptostreptococcus stomatis MGYG-HGUT-04565 63 1730330 37.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/496/525/GCA_902496525.1_UHGG-TPA_MGYG-HGUT-04565 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus stomatis PRJEB33885 169971 SAMEA5854072 UHGG-TPA_MGYG-HGUT-04565 Contig 2019-08-07T10:19:34.526 not provided human gut EMG 10.0x 98.6 0 99.62 0.1 GCF_902496525.1 CABVBJ01 1542 1598 1598 32 4 19 1 Peptostreptococcus_stomatis_homd_HMT_112 GCA_902497175.1 HMT-473 MGYG-HGUT-04638 Unnamed Cultivated Oral (Abundance: High) HMT-473 Alloprevotella sp. HMT-473 MGYG-HGUT-04638 81 1864341 47.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/497/175/GCA_902497175.1_UHGG-TPA_MGYG-HGUT-04638 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella sp000318095 PRJEB33885 1283315 SAMEA5854145 UHGG-TPA_MGYG-HGUT-04638 Contig 2019-08-07T10:19:36.806 Germany human gut EMG 10.0x 68.79 0.56 69.54 0.47 CABVDX01 1424 1459 1459 6 0 29 0 Alloprevotella_sp_HMT_473_homd_HMT_473 GCA_902497265.1 HMT-693 MGYG-HGUT-04627 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens MGYG-HGUT-04627 37 2663266 42.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/497/265/GCA_902497265.1_UHGG-TPA_MGYG-HGUT-04627 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJEB33885 159272 SAMEA5854134 UHGG-TPA_MGYG-HGUT-04627 Contig 2019-08-07T10:19:36.480 Germany human gut EMG 10.0x 99.65 0 99.91 0.24 GCF_902497265.1 CABVDT01 2322 2376 2376 8 0 45 1 Prevotella_nigrescens_homd_HMT_693 GCA_902497285.1 HMT-643 MGYG-HGUT-04629 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia MGYG-HGUT-04629 68 2382499 43.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/497/285/GCA_902497285.1_UHGG-TPA_MGYG-HGUT-04629 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJEB33885 159272 SAMEA5854136 UHGG-TPA_MGYG-HGUT-04629 Contig 2019-08-07T10:19:36.526 Germany human gut EMG 10.0x 98.99 0 99.86 0.04 GCF_902497285.1 CABVDW01 1994 2050 2050 10 0 45 1 Prevotella_intermedia_homd_HMT_643 GCA_902509485.1 HMT-601 none Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis none 3 2547194 32.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/509/485/GCA_902509485.1_Se_BPH0697 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJEB35032 1282 SAMEA3712729 Se_BPH0697 Complete Genome 2016-06-09T10:05:20.560 Australia clinical UNIVERSITY OF MELBOURNE 162.0x 98.94 99.67 0 100 0.09 GCF_902509485.1 2337 2502 2502 84 19 61 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_902509495.1 HMT-601 none Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis none 2 2541041 32.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/509/495/GCA_902509495.1_Se_BPH0704 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJEB35032 1282 SAMEA3712735 Se_BPH0704 Complete Genome 2016-06-09T10:05:20.816 Australia clinical UNIVERSITY OF MELBOURNE 102.0x 97.18 99.67 0 100 0.1 GCF_902509495.1 2322 2481 2481 78 19 61 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_902509505.1 HMT-601 none Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis none 3 2581001 32.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/509/505/GCA_902509505.1_Se_BPH0736 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJEB35032 1282 SAMEA3712766 Se_BPH0736 Complete Genome 2016-06-09T10:05:22.636 Australia clinical UNIVERSITY OF MELBOURNE 60.0x 99.52 99.25 0.28 99.99 0.19 GCF_902509505.1 2376 2550 2550 94 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_902509515.1 HMT-601 none Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis none 3 2598654 32.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/509/515/GCA_902509515.1_Se_BPH0723 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJEB35032 1282 SAMEA3712754 Se_BPH0723 Complete Genome 2016-06-09T10:05:21.990 Australia clinical UNIVERSITY OF MELBOURNE 238.0x 99.61 99.81 0 99.99 0.16 GCF_902509515.1 2381 2544 2544 84 19 59 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_902509525.1 HMT-601 none Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis none 2 2646468 32.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/509/525/GCA_902509525.1_Se_RP62a_UoM d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJEB35032 1282 SAMEA3712772 Se_RP62a_UoM Complete Genome 2016-06-09T10:05:23.026 Australia clinical UNIVERSITY OF MELBOURNE 170.0x 99.36 99.81 0 100 0.13 GCF_902509525.1 2442 2603 2603 81 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_902509535.1 HMT-601 none Named Cultivated Skin (Abundance: High) HMT-601 Staphylococcus epidermidis none 3 2561733 32.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/509/535/GCA_902509535.1_Se_BPH0711 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus epidermidis PRJEB35032 1282 SAMEA3712742 Se_BPH0711 Complete Genome 2016-06-09T10:05:21.193 Australia clinical UNIVERSITY OF MELBOURNE 206.0x 99.7 99.81 0 99.99 0.04 GCF_902509535.1 2373 2539 2539 86 19 60 1 Staphylococcus_epidermidis_homd_HMT_601 GCA_902809765.1 HMT-591 NCTC11397 Named Cultivated Pathogen (Abundance: Scarce) HMT-591 Corynebacterium diphtheriae NCTC11397 1 2463666 53.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/809/765/GCA_902809765.1_NCTC11397 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae PRJEB22103 1717 SAMEA6566652 NCTC11397 Complete Genome 2020-02-25T09:15:25.633 USA INSTITUT PASTEUR 96.0x 100 99.45 0 99.99 1.11 GCF_902809765.1 2328 2409 2409 10 15 55 1 Corynebacterium_diphtheriae_homd_HMT_591 GCA_902810435.1 HMT-161 SKV38 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula SKV38 1 2146482 38.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/810/435/GCA_902810435.1_SKV38 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella sp032483415 PRJEB36442 29466 SAMEA6589604 SKV38 Complete Genome 2020-04-29T08:11:46.563 USA pediatric cohort consisted of 67 unique buccal molar plaque samples INSTITUT PASTEUR 600.0x 96.35 100 0 99.99 0.09 GCF_902810435.1 1912 1996 1996 22 12 49 1 Veillonella_parvula_homd_HMT_161 GCA_902810545.1 HMT-001 CCUG 50783 Named Cultivated Zoonotic Pathogen (Abundance: Scarce) HMT-001 Bartonella schoenbuchensis CCUG 50783 98 1576519 37.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/810/545/GCA_902810545.1_Bartonella_schoenbuchensis_CCUG50783 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Bartonella;s__Bartonella schoenbuchensis PRJEB34909 165694 SAMEA6461359 Bartonella_schoenbuchensis_CCU Scaffold 2021-03-13T10:25:45.993 Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France 54.0x 96.98 100 0.72 100 0.25 GCF_902810545.1 CADDYD01 1326 1376 1376 7 3 39 1 Bartonella_schoenbuchensis_homd_HMT_001 GCA_902825205.1 HMT-574 SC467 Named Cultivated Gastrointestinal Tract (Abundance: Medium) HMT-574 Escherichia coli SC467 1 4715938 50.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/825/205/GCA_902825205.1_SC467 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli PRJEB36951 562 SAMEA6595238 SC467 Complete Genome 2020-03-04T19:09:24.773 USA soil MASSEY UNIVERSITY 100.0x 99.31 99.85 0.14 100 0.17 GCF_902825205.1 4345 4673 4673 219 22 86 1 Escherichia_coli_homd_HMT_574 GCA_902827125.1 HMT-543 Marseille-P9010 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus Marseille-P9010 28 1850945 38.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/827/125/GCA_902827125.1_P9010 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJEB37549 2490633 SAMEA6648847 P9010 Contig 2020-04-18T18:21:23.643 URMITE 20.0x 96.38 99.88 0 99.99 0.06 GCF_902827125.1 CADEHI01 1780 1894 1894 67 5 41 1 Streptococcus_anginosus_homd_HMT_543 GCA_902850275.2 HMT-755 clinical strain from anonymous patient from Besancon hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient from Besancon hospital 1 2174336 40.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/850/275/GCA_902850275.2_Ssal_B35_v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJEB37539 1304 SAMEA6647150 Ssal_B35_v2 Scaffold 2020-04-25T09:00:33.476 France blood culture University of Oxford, Oxford, England, UK 60.0x 95.9 99.76 0.8 100 0.13 GCF_902850275.2 CADHRW02 1942 2058 2058 30 18 67 1 Streptococcus_salivarius_homd_HMT_755 GCA_902850315.1 HMT-755 clinical strain from anonymous patient of Besancon hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient of Besancon hospital 1 2288276 39.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/850/315/GCA_902850315.1_Ssal_B50 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJEB37539 1304 SAMEA6647151 Ssal_B50 Scaffold 2020-04-25T09:00:33.523 France blood culture UNIVERSITY OF OXFORD 60.0x 96.14 99.9 0.19 100 0.16 GCF_902850315.1 CADHRX01 2018 2141 2141 36 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_902850335.2 HMT-755 commensal strain from anonymous patient (individual 1) Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius commensal strain from anonymous patient (individual 1) 1 2190275 40.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/850/335/GCA_902850335.2_Ssal_F1-8_v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJEB37539 1304 SAMEA6647155 Ssal_F1-8_v2 Scaffold 2020-04-25T09:00:33.696 France feces University of Oxford, Oxford, England, UK 60.0x 95.15 99.61 0.58 99.98 0.05 GCF_902850335.2 CAJIXW02 1965 2085 2085 34 18 67 1 Streptococcus_salivarius_homd_HMT_755 GCA_902850355.2 HMT-755 clinical strain from anonymous patient of Limoges Hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient of Limoges Hospital 1 2220027 40.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/850/355/GCA_902850355.2_Ssal_L11_v2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJEB37539 1304 SAMEA6647159 Ssal_L11_v2 Scaffold 2020-04-25T09:00:33.866 France blood culture University of Oxford, Oxford, England, UK 60.0x 96.53 99.9 0.19 99.99 0.67 GCF_902850355.2 CADHSA02 1992 2110 2110 31 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_902858925.1 HMT-755 clinical strain from anonymous patient of Limoges Hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient of Limoges Hospital 1 2264732 39.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/858/925/GCA_902858925.1_Ssal_L22 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJEB37539 1304 SAMEA6647160 Ssal_L22 Scaffold 2020-04-25T09:00:33.913 France blood culture UNIVERSITY OF OXFORD 60.0x 96.18 99.96 0.15 100 0.01 GCF_902858925.1 CADIGV01 2013 2134 2134 35 18 67 1 Streptococcus_salivarius_homd_HMT_755 GCA_902858935.1 HMT-755 clinical strain from anonymous patient of Limoges Hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient of Limoges Hospital 1 2185075 40.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/858/935/GCA_902858935.1_Ssal_L25 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJEB37539 1304 SAMEA6647161 Ssal_L25 Scaffold 2020-04-25T09:00:33.960 France blood culture UNIVERSITY OF OXFORD 60.0x 96.17 99.9 0.15 100 0.16 GCF_902858935.1 CADIGW01 1934 2054 2054 33 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_902858945.1 HMT-755 clinical strain from anonymous patient of Limoges Hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient of Limoges Hospital 1 2184790 40.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/858/945/GCA_902858945.1_Ssal_L45 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJEB37539 1304 SAMEA6647162 Ssal_L45 Scaffold 2020-04-25T09:00:33.993 France blood culture UNIVERSITY OF OXFORD 60.0x 95.92 99.76 0.15 99.99 0.08 GCF_902858945.1 CADIGX01 1961 2082 2082 34 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_902858995.1 HMT-755 clinical strain from anonymous patient of Limoges Hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient of Limoges Hospital 1 2318966 42.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/858/995/GCA_902858995.1_Ssal_L60 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJEB37539 1304 SAMEA6647164 Ssal_L60 Scaffold 2020-04-25T09:00:34.040 France blood culture UNIVERSITY OF OXFORD 60.0x 95.97 99.76 0.15 100 0.25 GCF_902858995.1 CADIHA01 1999 2119 2119 33 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_902859005.1 HMT-755 clinical strain from anonymous patient of Nancy Hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient of Nancy Hospital 1 2170832 40.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/859/005/GCA_902859005.1_Ssal_N20 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJEB37539 1304 SAMEA6647168 Ssal_N20 Scaffold 2020-04-25T09:00:34.210 France abdominal fluid UNIVERSITY OF OXFORD 60.0x 96.52 99.9 0.15 99.99 0.05 GCF_902859005.1 CADIHG01 1942 2058 2058 29 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_902859025.1 HMT-755 clinical strain from anonymous patient of Limoges Hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient of Limoges Hospital 1 2285677 40.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/859/025/GCA_902859025.1_Ssal_L64 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJEB37539 1304 SAMEA6647166 Ssal_L64 Scaffold 2020-04-25T09:00:34.133 France pleural fluid UNIVERSITY OF OXFORD 60.0x 96.18 99.9 0.15 100 0.16 GCF_902859025.1 CADIHF01 2022 2145 2145 36 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_902859035.1 HMT-755 clinical strain from anonymous patient of Tours Hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient of Tours Hospital 1 2200590 40.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/859/035/GCA_902859035.1_Ssal_T93 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJEB37539 1304 SAMEA6647169 Ssal_T93 Scaffold 2020-04-25T09:00:34.260 France blood culture UNIVERSITY OF OXFORD 60.0x 97.46 99.84 0.15 100 0.01 GCF_902859035.1 CADIHE01 1981 2098 2098 30 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_902983995.1 HMT-438 Marseille-CSURQ0203 Named Cultivated Oral (Abundance: Medium) HMT-438 Treponema socranskii subsp. buccale Marseille-CSURQ0203 1 2866542 48.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/983/995/GCA_902983995.1_Q0203 d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D;s__Treponema_D buccale PRJEB38018 69713 SAMEA6803974 Q0203 Complete Genome 2020-06-27T14:06:10.546 saliva URMITE 10.0x 97.12 100 0 99.93 0.23 GCF_902983995.1 2601 2663 0 2 9 50 1 Treponema_socranskii_HMT_438_440_769 GCA_903172975.1 HMT-755 commensal strain from anonymous patient (individual 1) Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius commensal strain from anonymous patient (individual 1) 1 2214583 40.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/172/975/GCA_903172975.1_Ssal_F1-4 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJEB37539 1304 SAMEA6647154 Ssal_F1-4 Scaffold 2020-04-25T09:00:33.650 France feces UNIVERSITY OF OXFORD 60.0x 95.18 99.55 0.58 99.99 0.13 GCF_903172975.1 CAETAU01 2014 2136 2136 35 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_903797675.1 HMT-858 4 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-858 Comamonas testosteroni 4 73 5425203 61.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/797/675/GCA_903797675.1_B337 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas;s__Comamonas testosteroni PRJEB38476 1009852 SAMEA6854746 B337 Scaffold 2020-07-24T15:06:03.110 HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ. 100.0x 99.99 99.85 0.46 100 0.1 GCF_903797675.1 CAIGKA01 4873 4988 4988 35 3 76 1 Comamonas_testosteroni_homd_HMT_858 GCA_903886345.1 HMT-152 STH_CIRM_32 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-152 Streptococcus thermophilus STH_CIRM_32 1 1860069 39.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/886/345/GCA_903886345.1_Streptococcus_thermophilus_CIRM_32 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus PRJEB36851 1308 SAMEA6957292 Streptococcus_thermophilus_CIR Complete Genome 2020-06-19T19:06:05.146 France artisanal lactic starter (for Emmental cheese making) INRAE 100.0x 98.72 99.89 0.36 99.99 0.39 GCF_903886345.1 1948 2106 2106 72 18 67 1 Streptococcus_thermophilus_homd_HMT_152 GCA_903908965.1 HMT-755 clinical strain from anonymous patient from Besancon hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient from Besancon hospital 1 2174336 40.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/908/965/GCA_903908965.1_Ssal_B35_v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJEB37543 1304 SAMEA6647150 Ssal_B35_v3 Scaffold 2020-04-25T09:00:33.476 France blood culture INRA Toulouse 60.0x 95.9 99.76 0.8 100 0.13 GCF_903908965.1 CAIVTS01 1942 2058 2058 30 18 67 1 Streptococcus_salivarius_homd_HMT_755 GCA_903909965.1 HMT-755 commensal strain from anonymous patient (individual 1) Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius commensal strain from anonymous patient (individual 1) 1 2190275 40.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/909/965/GCA_903909965.1_Ssal_F1-8_v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJEB37543 1304 SAMEA6647155 Ssal_F1-8_v3 Scaffold 2020-04-25T09:00:33.696 France feces INRA Toulouse 60.0x 95.15 99.61 0.58 99.98 0.05 GCF_903909965.1 CAIVXX01 1965 2085 2085 34 18 67 1 Streptococcus_salivarius_homd_HMT_755 GCA_903910465.1 HMT-755 clinical strain from anonymous patient of Limoges Hospital Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius clinical strain from anonymous patient of Limoges Hospital 1 2220027 40.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/910/465/GCA_903910465.1_Ssal_L11_v3 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius PRJEB37543 1304 SAMEA6647159 Ssal_L11_v3 Scaffold 2020-04-25T09:00:33.866 France blood culture INRA Toulouse 60.0x 96.53 99.9 0.19 99.99 0.67 GCF_903910465.1 CAIVZS01 1992 2110 2110 31 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_904423865.1 HMT-104 Marseille-P2668 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-104 Paracoccus yeei Marseille-P2668 148 4688121 67.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/904/423/865/GCA_904423865.1_G1426 d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus yeei PRJEB40293 147645 SAMEA7297155 G1426 Contig 2020-09-12T15:06:38.840 Permafrost IHU - Mediterranee Infection 117.0x 98.53 99.62 0.76 99.99 0.89 GCF_904423865.1 CAJGAB01 4524 4608 4608 26 3 54 1 Paracoccus_yeei_homd_HMT_104 GCA_904425455.1 HMT-565 UPC1 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-565 Enterobacter cancerogenus UPC1 2 4935357 55.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/904/425/455/GCA_904425455.1_ASM90442545v1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter cancerogenus PRJEB40359 69218 SAMEA7311505 ASM90442545v1 Complete Genome 2021-01-17T10:50:25.076 Algeria activated sludge GMGM 143.0x 98.91 100 0.41 100 0.47 GCF_904425455.1 4525 4790 4790 152 25 87 1 Enterobacter_cancerogenus_homd_HMT_565 GCA_905071805.1 HMT-813 AMBR12 Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum AMBR12 32 1900920 39.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/071/805/GCA_905071805.1_AMBR12 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJEB32716 29394 SAMEA7487701 AMBR12 Scaffold 2020-10-31T14:07:08.703 UANTW 180.0x 97.53 99.18 1.9 98.97 0.54 GCF_905071805.1 CAJHJL01 1760 1858 1858 42 5 50 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_905071825.1 HMT-755 AMBR024 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius AMBR024 33 2320709 39.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/071/825/GCA_905071825.1_AMBR024 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJEB32716 1304 SAMEA7510346 AMBR024 Contig 2020-11-03T16:19:14.120 UANTW 153.0x 95.79 99.9 0.17 100 0.12 GCF_905071825.1 CAJHJQ01 2080 2170 2170 34 5 50 1 Streptococcus_salivarius_homd_HMT_755 GCA_905071845.1 HMT-755 AMBR055 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius AMBR055 31 2365112 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/071/845/GCA_905071845.1_AMBR055 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius_E PRJEB32716 1304 SAMEA7510345 AMBR055 Scaffold 2020-11-03T16:19:14.090 UANTW 175.0x 96.08 99.96 1.52 100 0.59 GCF_905071845.1 CAJHJN01 2156 2245 2245 32 6 50 1 Streptococcus_salivarius_homd_HMT_755 GCA_905187725.1 HMT-161 SRR413758-bin.8 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula SRR413758-bin.8 9 2097259 yes 38.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/187/725/GCA_905187725.1_SRR413758-mag-bin.8 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJEB37358 29466 SAMEA7848116 SRR413758-mag-bin.8 Contig 2021-01-27T11:13:51.883 China human gut EMG 10.0x 96.52 100 0 100 0.32 GCF_905187725.1 CAJJJA01 1866 1932 1932 21 1 43 1 Veillonella_parvula_homd_HMT_161 GCA_905188175.1 HMT-690 ERR414493-bin.20 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum ERR414493-bin.20 41 2236072 yes 34.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/188/175/GCA_905188175.1_ERR414493-mag-bin.20 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJEB37358 859 SAMEA7847844 ERR414493-mag-bin.20 Contig 2021-01-27T10:49:06.686 Spain human gut EMG 10.0x 99.81 100 0 100 0.2 GCF_905188175.1 CAJJKW01 2142 2188 2188 16 2 27 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_905193455.1 HMT-686 ERR1190612-bin.35 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans ERR1190612-bin.35 36 1971455 yes 36.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/193/455/GCA_905193455.1_ERR1190612-mag-bin.35 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJEB37358 1309 SAMEA7846299 ERR1190612-mag-bin.35 Contig 2021-01-27T11:25:44.160 China human gut EMG 10.0x 98.97 98.09 1.7 96.16 0.43 CAJJOR01 1841 1909 1909 49 0 18 1 Streptococcus_mutans_homd_HMT_686 GCA_905194015.1 HMT-122 ERR1190793-bin.22 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis ERR1190793-bin.22 36 1906698 yes 45.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/194/015/GCA_905194015.1_ERR1190793-mag-bin.22 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJEB37358 165188 SAMEA7846385 ERR1190793-mag-bin.22 Contig 2021-01-27T11:06:57.610 China human gut EMG 10.0x 100 0 99.1 0.34 CAJJRA01 1849 1924 1924 30 2 42 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_905194225.1 HMT-476 ERR1430404-bin.12 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava ERR1430404-bin.12 63 2198368 yes 49.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/194/225/GCA_905194225.1_ERR1430404-mag-bin.12 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJEB37358 237778 SAMEA7846603 ERR1430404-mag-bin.12 Contig 2021-01-27T11:09:38.370 China human gut EMG 10.0x 99.32 0.34 100 0.04 GCF_905194225.1 CAJJRO01 2087 2148 2148 18 0 42 1 Neisseria_subflava_homd_HMT_476 GCA_905196715.1 HMT-542 ERR414493-bin.1 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius ERR414493-bin.1 112 1853305 yes 36.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/196/715/GCA_905196715.1_ERR414493-mag-bin.1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJEB37358 169971 SAMEA7847843 ERR414493-mag-bin.1 Contig 2021-01-27T10:49:40.280 Spain human gut EMG 10.0x 100 0.37 99.38 1.91 CAJJWA01 1654 1702 1702 30 2 14 2 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_905197735.1 HMT-718 ERR1190737-bin.22 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae ERR1190737-bin.22 37 1867846 yes 39.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/197/735/GCA_905197735.1_ERR1190737-mag-bin.22 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_S PRJEB37358 237779 SAMEA7846351 ERR1190737-mag-bin.22 Contig 2021-01-27T11:26:20.190 China human gut EMG 10.0x 99.41 0.3 100 0.69 GCF_905197735.1 CAJKAD01 1790 1850 1850 23 0 36 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_905197845.1 HMT-121 ERR1190736-bin.4 Named Cultivated Oral (Abundance: Medium) HMT-121 Anaeroglobus geminatus ERR1190736-bin.4 44 1734376 yes 48.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/197/845/GCA_905197845.1_ERR1190736-mag-bin.4 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus geminatus PRJEB37358 413898 SAMEA7846349 ERR1190736-mag-bin.4 Contig 2021-01-27T11:26:29.443 China human gut EMG 10.0x 99.4 0.07 99.73 0.02 CAJKAH01 1636 1703 1703 26 1 39 1 Anaeroglobus_geminatus_homd_HMT_121 GCA_905197865.1 HMT-534 ERR1190736-bin.21 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens ERR1190736-bin.21 22 1896890 yes 37.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/197/865/GCA_905197865.1_ERR1190736-mag-bin.21 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJEB37358 316089 SAMEA7846347 ERR1190736-mag-bin.21 Contig 2021-01-27T11:08:18.313 China human gut EMG 10.0x 99.45 0 99.9 0.04 GCF_905197865.1 CAJKAL01 1784 1838 1838 32 1 20 1 Granulicatella_adiacens_homd_HMT_534 GCA_905198045.1 HMT-718 ERR1430547-bin.16 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae ERR1430547-bin.16 28 2091746 yes 39.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/198/045/GCA_905198045.1_ERR1430547-mag-bin.16 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJEB37358 237779 SAMEA7846771 ERR1430547-mag-bin.16 Contig 2021-01-27T11:04:24.953 China human gut EMG 10.0x 99.66 0 100 0.08 GCF_905198045.1 CAJKBD01 1967 2069 2069 57 3 41 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_905198105.1 HMT-111 ERR1190758-bin.22 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra ERR1190758-bin.22 47 1726992 yes 28.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/198/105/GCA_905198105.1_ERR1190758-mag-bin.22 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJEB37358 33033 SAMEA7846370 ERR1190758-mag-bin.22 Contig 2021-01-27T11:26:31.420 China human gut EMG 10.0x 97.23 98.48 0.61 99.81 0.83 CAJKBF01 1628 1703 1703 29 4 41 1 Parvimonas_micra_homd_HMT_111 GCA_905198325.1 HMT-357 ERR1190746-bin.10 Named Cultivated Oral (Abundance: Scarce) HMT-357 Pyramidobacter piscolens ERR1190746-bin.10 44 2400787 yes 60.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/198/325/GCA_905198325.1_ERR1190746-mag-bin.10 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter;s__Pyramidobacter piscolens PRJEB37358 1623495 SAMEA7846362 ERR1190746-mag-bin.10 Contig 2021-01-27T11:26:30.106 China human gut EMG 10.0x 100 0 99.63 1.1 GCF_905198325.1 CAJKCF01 2155 2226 2226 19 3 48 1 Pyramidobacter_piscolens_homd_HMT_357 GCA_905199265.1 HMT-794 ERR1430407-bin.9 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-794 Hallella multisaccharivorax ERR1430407-bin.9 55 2757047 yes 48.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/199/265/GCA_905199265.1_ERR1430407-mag-bin.9 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella multisaccharivorax PRJEB37358 159272 SAMEA7846608 ERR1430407-mag-bin.9 Contig 2021-01-27T11:10:40.836 China human gut EMG 10.0x 97.64 0 99.48 0.06 CAJKFW01 2322 2383 2383 14 0 46 1 Hallella_multisaccharivorax_homd_HMT_794 GCA_905199975.1 HMT-768 SRR7721897-bin.27 Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus SRR7721897-bin.27 74 2052412 yes 43.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/199/975/GCA_905199975.1_SRR7721897-mag-bin.27 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJEB37358 1310 SAMEA7848351 SRR7721897-mag-bin.27 Contig 2021-01-27T11:16:27.230 China human gut EMG 10.0x 99.29 96.25 3.5 95.22 2.42 CAJKIK01 1906 1948 1948 25 0 16 1 Streptococcus_sobrinus_homd_HMT_768 GCA_905201815.1 HMT-160 SRR341688-bin.4 Named Cultivated Oral (Abundance: High) HMT-160 Veillonella dispar SRR341688-bin.4 203 1939051 yes 38.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/201/815/GCA_905201815.1_SRR341688-mag-bin.4 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella dispar PRJEB37358 159268 SAMEA7847959 SRR341688-mag-bin.4 Contig 2021-01-27T10:50:57.816 China human gut EMG 10.0x 96.74 4.39 87.38 4.15 GCF_905201815.1 CAJKPW01 1746 1787 1787 17 1 22 1 Veillonella_dispar_homd_HMT_160 GCA_905202725.1 HMT-524 ERR1430548-bin.10 Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica ERR1430548-bin.10 32 2110870 yes 38.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/202/725/GCA_905202725.1_ERR1430548-mag-bin.10 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJEB37358 39777 SAMEA7846773 ERR1430548-mag-bin.10 Contig 2021-01-27T11:03:16.363 China human gut EMG 10.0x 96.42 100 0 100 0.05 CAJKSX01 1892 1962 1962 23 0 46 1 Veillonella_atypica_homd_HMT_524 GCA_905203035.1 HMT-945 ERR1600749-bin.17 Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus ERR1600749-bin.17 56 2063107 yes 40.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/203/035/GCA_905203035.1_ERR1600749-mag-bin.17 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus PRJEB37358 237779 SAMEA7847069 ERR1600749-mag-bin.17 Contig 2021-01-27T10:58:35.356 China human gut EMG 10.0x 98.62 0.12 99.23 1.11 GCF_905203035.1 CAJKUI01 1949 1990 1990 26 1 13 1 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_905203515.1 HMT-420 ERR414442-bin.5 Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis ERR414442-bin.5 202 2577276 yes 26.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/203/515/GCA_905203515.1_ERR414442-mag-bin.5 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJEB37358 851 SAMEA7847768 ERR414442-mag-bin.5 Contig 2021-01-27T10:48:24.516 Spain human gut EMG 10.0x 91.77 100 0.57 100 0.29 CAJKWE01 2595 2642 2642 18 2 26 1 Fusobacterium_animalis_homd_HMT_420 GCA_905204285.1 HMT-946 SRR5558175-bin.6 Named Cultivated Oral (Abundance: Medium) HMT-946 Haemophilus pittmaniae SRR5558175-bin.6 99 1965812 yes 42.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/204/285/GCA_905204285.1_SRR5558175-mag-bin.6 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D pittmaniae PRJEB37358 237779 SAMEA7848182 SRR5558175-mag-bin.6 Contig 2021-01-27T11:13:23.890 Spain human gut EMG 10.0x 90.68 3.11 91.02 4.05 CAJKYV01 1821 1872 1872 20 1 29 1 Haemophilus_pittmaniae_homd_HMT_946 GCA_905204445.1 HMT-860 ERR414468-bin.7 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-860 Fusobacterium gonidiaformans ERR414468-bin.7 59 1627629 yes 32.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/204/445/GCA_905204445.1_ERR414468-mag-bin.7 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C gonidiaformans PRJEB37358 849 SAMEA7847821 ERR414468-mag-bin.7 Contig 2021-01-27T10:48:22.546 Spain human gut EMG 10.0x 98.77 100 0 99.98 0.1 GCF_905204445.1 CAJKZY01 1606 1646 1646 13 3 23 1 Fusobacterium_gonidiaformans_homd_HMT_860 GCA_905204565.1 HMT-124 ERR414475-bin.32 Named Cultivated Oral (Abundance: Low) HMT-124 Selenomonas artemidis ERR414475-bin.32 117 2221702 yes 57.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/204/565/GCA_905204565.1_ERR414475-mag-bin.32 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda artemidis PRJEB37358 159275 SAMEA7847827 ERR414475-mag-bin.32 Contig 2021-01-27T10:48:13.883 Spain human gut EMG 10.0x 98.36 0.86 99.24 2.37 GCF_905204565.1 CAJLAG01 2044 2109 2109 17 3 45 0 Selenomonas_artemidis_homd_HMT_124 GCA_905205105.1 HMT-610 SRR7721899-bin.5 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens SRR7721899-bin.5 64 2265075 yes 48.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/205/105/GCA_905205105.1_SRR7721899-mag-bin.5 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJEB37358 237778 SAMEA7848358 SRR7721899-mag-bin.5 Contig 2021-01-27T11:15:35.346 China human gut EMG 10.0x 99.47 0 100 0.16 GCF_905205105.1 CAJLCH01 2117 2185 2185 24 0 43 1 Neisseria_flavescens_homd_HMT_610 GCA_905208655.1 HMT-543 ERR1430443-bin.2 Named Cultivated Oral (Abundance: High) HMT-543 Streptococcus anginosus ERR1430443-bin.2 18 1825544 yes 38.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/208/655/GCA_905208655.1_ERR1430443-mag-bin.2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus anginosus PRJEB37358 1328 SAMEA7846664 ERR1430443-mag-bin.2 Contig 2021-01-27T11:11:04.643 China human gut EMG 10.0x 96.03 99.88 0.71 99.92 0.13 CAJLPW01 1757 1863 1863 80 0 25 1 Streptococcus_anginosus_homd_HMT_543 GCA_905208875.1 HMT-421 ERR1600666-bin.80 Named Cultivated Oral (Abundance: Medium) HMT-421 Veillonella tobetsuensis ERR1600666-bin.80 134 1829495 yes 38.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/208/875/GCA_905208875.1_ERR1600666-mag-bin.80 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella tobetsuensis PRJEB37358 159268 SAMEA7846950 ERR1600666-mag-bin.80 Contig 2021-01-27T11:06:36.580 China human gut EMG 10.0x 92.71 0.75 90.03 0.19 CAJLQP01 1719 1763 1763 15 1 27 1 Veillonella_tobetsuensis_homd_HMT_421 GCA_905209855.1 HMT-021 ERR260276-bin.4 Named Cultivated Oral (Abundance: High) HMT-021 Streptococcus vestibularis ERR260276-bin.4 106 1811841 yes 39.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/209/855/GCA_905209855.1_ERR260276-mag-bin.4 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus vestibularis PRJEB37358 1343 SAMEA7847260 ERR260276-mag-bin.4 Contig 2021-01-27T11:00:21.400 Sweden human gut EMG 10.0x 98.65 98.35 0.15 99.92 0.72 GCF_905209855.1 CAJLUV01 1775 1828 1828 38 0 15 0 Streptococcus_vestibularis_homd_HMT_021 GCA_905210985.1 HMT-118 ERR414242-bin.5 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus ERR414242-bin.5 31 1661091 yes 44.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/210/985/GCA_905210985.1_ERR414242-mag-bin.5 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJEB37358 278064 SAMEA7847580 ERR414242-mag-bin.5 Contig 2021-01-27T10:54:53.010 Denmark human gut EMG 10.0x 96.11 0 99.18 0.29 GCF_905210985.1 CAJLYP01 1589 1686 1686 48 0 48 1 Dialister_invisus_homd_HMT_118 GCA_905211915.1 HMT-035 SRR413667-bin.4 Named Cultivated Oral (Abundance: High) HMT-035 Haemophilus paraphrohaemolyticus SRR413667-bin.4 198 1804185 yes 40.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/211/915/GCA_905211915.1_SRR413667-mag-bin.4 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A paraphrohaemolyticus PRJEB37358 237779 SAMEA7848014 SRR413667-mag-bin.4 Contig 2021-01-27T10:51:13.586 China human gut EMG 10.0x 92.83 0.45 92.18 0.52 GCF_905211915.1 CAJMCM01 1660 1705 1705 25 0 19 1 Haemophilus_paraphrohaemolyticus_homd_HMT_035 GCA_905212025.1 HMT-762 SRR413637-bin.17 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis SRR413637-bin.17 78 1749471 yes 42.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/212/025/GCA_905212025.1_SRR413637-mag-bin.17 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_B PRJEB37358 470564 SAMEA7848001 SRR413637-mag-bin.17 Contig 2021-01-27T10:51:05.316 China human gut EMG 10.0x 87.43 1 89.06 1.64 CAJMCP01 1620 1795 1795 152 0 23 0 Aggregatibacter_segnis_homd_HMT_762 GCA_905213095.1 HMT-123 ERR414442-bin.14 Named NVP** Uncultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-123 Anaeroglobus massiliensis ERR414442-bin.14 34 1663237 yes 50.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/213/095/GCA_905213095.1_ERR414442-mag-bin.14 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus massiliensis PRJEB37358 1852379 SAMEA7847766 ERR414442-mag-bin.14 Contig 2021-01-27T10:47:40.850 Spain human gut EMG 10.0x 98.86 97.6 0 84.3 0.03 GCF_905213095.1 CAJMGV01 1573 1704 1704 85 1 44 1 Anaeroglobus_massiliensis_homd_HMT_123 GCA_905214355.1 HMT-448 ERR1430458-bin.9 Unnamed Cultivated Oral (Abundance: Medium) HMT-448 Actinomyces sp. HMT-448 ERR1430458-bin.9 155 2692200 yes 69.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/214/355/GCA_905214355.1_ERR1430458-mag-bin.9 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp000220835 PRJEB37358 77133 SAMEA7852760 ERR1430458-mag-bin.9 Contig 2021-01-29T15:27:34.426 China human gut EMG 10.0x 95.24 1.09 94.1 0.61 CAJMMB01 2235 2294 2294 15 0 43 1 Actinomyces_sp_HMT_448_homd_HMT_448 GCA_905232535.2 HMT-634 171 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-634 Enterobacter hormaechei 171 7 5026082 54.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/232/535/GCA_905232535.2_AI2662v1_cp d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;s__Enterobacter hormaechei_C PRJEB42440 550 SAMEA7962743 AI2662v1_cp Complete Genome 2021-10-15T09:10:28.223 Spain Hospital Universitario Central de Asturias (Oviedo) CNAG-CRG 466.0x 87.97 99.77 0.34 100 0.12 4733 4971 4971 125 25 87 1 Enterobacter_hormaechei_homd_HMT_634 GCA_905369805.1 HMT-469 DRR046092-mag-bin.2 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica DRR046092-mag-bin.2 54 3181064 yes 40.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/369/805/GCA_905369805.1_DRR046092-mag-bin.2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB42319 28132 SAMEA8391432 DRR046092-mag-bin.2 Contig 2021-03-24T08:54:42.186 not provided Human saliva EMG 16.0x 96.86 98.99 0.11 99.95 0.09 GCF_905369805.1 CAJPJO01 2557 2618 2618 9 3 48 1 Prevotella_melaninogenica_homd_HMT_469 GCA_905369845.1 HMT-714 DRR046098-mag-bin.6 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens DRR046098-mag-bin.6 260 2449921 yes 37.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/369/845/GCA_905369845.1_DRR046098-mag-bin.6 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJEB42319 60133 SAMEA8391439 DRR046098-mag-bin.6 Contig 2021-03-24T08:54:42.403 not provided Human saliva EMG 7.0x 98.33 90.07 1.87 87.03 0.16 CAJPJI01 1924 1971 1971 7 1 38 1 Prevotella_pallens_homd_HMT_714 GCA_905369895.1 HMT-610 DRR046069-mag-bin.2 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens DRR046069-mag-bin.2 134 2197657 yes 48.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/369/895/GCA_905369895.1_DRR046069-mag-bin.2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJEB42319 484 SAMEA8391424 DRR046069-mag-bin.2 Contig 2021-03-24T08:54:41.936 not provided Human saliva EMG 6.0x 95.08 97.05 1.02 100 1.51 CAJPJD01 2108 2184 2184 23 0 52 1 Neisseria_flavescens_homd_HMT_610 GCA_905369905.1 HMT-681 DRR046091-mag-bin.3 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 DRR046091-mag-bin.3 26 2216574 yes 59.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/369/905/GCA_905369905.1_DRR046091-mag-bin.3 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJEB42319 43675 SAMEA8391431 DRR046091-mag-bin.3 Contig 2021-03-24T08:54:42.153 not provided Human saliva EMG 13.0x 94.34 99.33 0 99.98 0.31 GCF_905369905.1 CAJPJC01 1705 1770 1770 13 3 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_905369905.1 HMT-681 DRR046091-mag-bin.3 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 DRR046091-mag-bin.3 26 2216574 yes 59.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/369/905/GCA_905369905.1_DRR046091-mag-bin.3 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJEB42319 43675 SAMEA8391431 DRR046091-mag-bin.3 Contig 2021-03-24T08:54:42.153 not provided Human saliva EMG 13.0x 94.34 99.33 0 99.98 0.31 GCF_905369905.1 CAJPJC01 1705 1770 1770 13 3 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_905369945.1 HMT-866 DRR046100-mag-bin.3 Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii DRR046100-mag-bin.3 151 1951561 yes 57.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/369/945/GCA_905369945.1_DRR046100-mag-bin.3 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJEB42319 55565 SAMEA8391442 DRR046100-mag-bin.3 Contig 2021-03-24T08:54:42.500 not provided Human saliva EMG 6.0x 93.95 1.23 86.58 2.03 CAJPJJ01 1606 1667 1667 9 5 47 0 Actinomyces_graevenitzii_homd_HMT_866 GCA_905370215.1 HMT-476 DRR046100-mag-bin.6 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava DRR046100-mag-bin.6 117 2248233 yes 49.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/370/215/GCA_905370215.1_DRR046100-mag-bin.6 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJEB42319 28449 SAMEA8391443 DRR046100-mag-bin.6 Contig 2021-03-24T08:54:42.530 not provided Human saliva EMG 6.0x 94.71 98.39 1.14 99.99 0.49 CAJPJW01 2120 2226 2226 51 0 54 1 Neisseria_subflava_homd_HMT_476 GCA_905370285.1 HMT-476 DRR241310-mag-bin.1 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava DRR241310-mag-bin.1 194 2035777 yes 49.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/370/285/GCA_905370285.1_DRR241310-mag-bin.1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJEB43272 488 SAMEA8391525 DRR241310-mag-bin.1 Contig 2021-03-24T08:54:43.466 not provided Human saliva EMG 46.0x 96.15 0.68 95.35 0.69 CAJPKD01 2015 2077 2077 18 0 43 1 Neisseria_subflava_homd_HMT_476 GCA_905370355.1 HMT-595 DRR241310-mag-bin.2 Named Cultivated Oral (Abundance: High) HMT-595 Corynebacterium durum DRR241310-mag-bin.2 206 2294648 yes 57.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/370/355/GCA_905370355.1_DRR241310-mag-bin.2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium durum PRJEB43272 61592 SAMEA8391526 DRR241310-mag-bin.2 Contig 2021-03-24T08:54:43.500 not provided Human saliva EMG 51.0x 98.03 91.73 0.66 92.49 0.41 GCF_905370355.1 CAJPKJ01 2184 2233 2233 13 0 36 0 Corynebacterium_durum_homd_HMT_595 GCA_905370375.1 HMT-469 DRR241310-mag-bin.4 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica DRR241310-mag-bin.4 190 3187960 yes 40.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/370/375/GCA_905370375.1_DRR241310-mag-bin.4 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB43272 28132 SAMEA8391528 DRR241310-mag-bin.4 Contig 2021-03-24T08:54:43.560 not provided Human saliva EMG 49.0x 96.54 96.85 0.11 95.73 0.05 CAJPKL01 2522 2578 2578 12 1 41 2 Prevotella_melaninogenica_homd_HMT_469 GCA_905371295.1 HMT-279 SRR6059110-mag-bin.5 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri SRR6059110-mag-bin.5 178 1974985 yes 56.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/295/GCA_905371295.1_SRR6059110-mag-bin.5 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJEB43589 322095 SAMEA8394092 SRR6059110-mag-bin.5 Contig 2021-03-24T08:54:49.326 not provided Human saliva EMG 23.0x 96.27 93.21 1.26 89.98 1.01 CAJPKQ01 1488 1535 1535 7 0 39 1 Porphyromonas_pasteri_homd_HMT_279 GCA_905371345.1 HMT-714 SRR6059111-mag-bin.5 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens SRR6059111-mag-bin.5 152 2606864 yes 37.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/345/GCA_905371345.1_SRR6059111-mag-bin.5 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJEB43589 60133 SAMEA8394095 SRR6059111-mag-bin.5 Contig 2021-03-24T08:54:49.420 not provided Human saliva EMG 10.0x 98.51 99.31 0 99.84 0.19 GCF_905371345.1 CAJPLF01 2085 2119 2119 7 0 26 1 Prevotella_pallens_homd_HMT_714 GCA_905371445.1 HMT-469 SRR6059115-mag-bin.3 Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SRR6059115-mag-bin.3 99 3123098 yes 40.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/445/GCA_905371445.1_SRR6059115-mag-bin.3 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB43589 28132 SAMEA8394104 SRR6059115-mag-bin.3 Contig 2021-03-24T08:54:49.716 not provided Human saliva EMG 51.0x 96.81 98.65 0.34 99.97 0.04 GCF_905371445.1 CAJPLC01 2450 2502 2502 10 2 39 1 Prevotella_melaninogenica_homd_HMT_469 GCA_905371485.1 HMT-101 SRR6059123-mag-bin.5 Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava SRR6059123-mag-bin.5 39 2153782 yes 49.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/485/GCA_905371485.1_SRR6059123-mag-bin.5 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava_A PRJEB43589 28449 SAMEA8394112 SRR6059123-mag-bin.5 Contig 2021-03-24T08:54:49.966 not provided Human saliva EMG 23.0x 94.83 97.67 0 99.92 0.05 CAJPLL01 2050 2112 2112 21 0 40 1 Neisseria_perflava_homd_HMT_101 GCA_905371525.1 HMT-943 SRR6059123-mag-bin.4 Named Cultivated Oral (Abundance: Medium) HMT-943 Prevotella aurantiaca SRR6059123-mag-bin.4 238 2285026 yes 38.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/525/GCA_905371525.1_SRR6059123-mag-bin.4 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella aurantiaca PRJEB43589 596085 SAMEA8394111 SRR6059123-mag-bin.4 Contig 2021-03-24T08:54:49.936 not provided Human saliva EMG 11.0x 98.38 91.75 0 91.41 0.75 GCF_905371525.1 CAJPLR01 1843 1881 1881 6 0 32 0 Prevotella_aurantiaca_homd_HMT_943 GCA_905371625.1 HMT-225 SRR9217389-mag-bin.17 Unnamed Cultivated Oral (Abundance: Medium) HMT-225 Leptotrichia sp. HMT-225 SRR9217389-mag-bin.17 306 2012492 yes 29.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/625/GCA_905371625.1_SRR9217389-mag-bin.17 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia massiliensis PRJEB43277 1852388 SAMEA8395093 SRR9217389-mag-bin.17 Contig 2021-03-24T08:55:21.310 not provided not provided EMG 45.0x 96.44 89.61 1.7 82.38 0.3 CAJPMJ01 1842 1897 1897 23 0 31 1 Leptotrichia_sp_HMT_225_homd_HMT_225 GCA_905371645.1 HMT-494 SRR9217391-mag-bin.16 Named Cultivated Oral (Abundance: Medium) HMT-494 Lachnoanaerobaculum saburreum SRR9217391-mag-bin.16 243 2391254 yes 36.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/645/GCA_905371645.1_SRR9217391-mag-bin.16 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum saburreum PRJEB43277 467210 SAMEA8395101 SRR9217391-mag-bin.16 Contig 2021-03-24T08:55:21.593 not provided not provided EMG 12.0x 97.8 91.88 0 92.32 0 CAJPMC01 2182 2219 2219 15 0 22 0 Lachnoanaerobaculum_saburreum_homd_HMT_494 GCA_905371655.1 HMT-598 SRR9217389-mag-bin.9 Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata SRR9217389-mag-bin.9 137 2044086 yes 54.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/655/GCA_905371655.1_SRR9217389-mag-bin.9 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJEB43277 495 SAMEA8395091 SRR9217389-mag-bin.9 Contig 2021-03-24T08:55:21.170 not provided not provided EMG 68.0x 96.8 90.2 0.23 86.95 0.02 GCF_905371655.1 CAJPMF01 1965 2008 2008 11 0 31 1 Neisseria_elongata_homd_HMT_598 GCA_905371675.1 HMT-476 SRR9217391-mag-bin.22 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava SRR9217391-mag-bin.22 57 2245144 yes 49.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/675/GCA_905371675.1_SRR9217391-mag-bin.22 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria subflava PRJEB43277 28449 SAMEA8395104 SRR9217391-mag-bin.22 Contig 2021-03-24T08:55:21.843 not provided not provided EMG 24.0x 96.4 99.7 0 100 0.06 GCF_905371675.1 CAJPLX01 2181 2284 2284 54 0 48 1 Neisseria_subflava_homd_HMT_476 GCA_905371755.1 HMT-888 SRR9217391-mag-bin.19 Named Cultivated Oral (Abundance: High) HMT-888 Actinomyces dentalis SRR9217391-mag-bin.19 298 3326315 yes 73.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/755/GCA_905371755.1_SRR9217391-mag-bin.19 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces dentalis PRJEB43277 272548 SAMEA8395102 SRR9217391-mag-bin.19 Contig 2021-03-24T08:55:21.766 not provided not provided EMG 409.0x 98.08 91.98 3.01 89.74 2.31 GCF_905371755.1 CAJPME01 2694 2757 2757 16 1 45 1 Actinomyces_dentalis_homd_HMT_888 GCA_905371775.1 HMT-046 SRR9217391-mag-bin.6 Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum SRR9217391-mag-bin.6 115 1570595 yes 30.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/775/GCA_905371775.1_SRR9217391-mag-bin.6 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJEB43277 29391 SAMEA8395096 SRR9217391-mag-bin.6 Contig 2021-03-24T08:55:21.420 not provided not provided EMG 28.0x 96.7 97.22 0.57 99.96 0.09 GCF_905371775.1 CAJPMP01 1489 1529 1529 19 0 20 1 Gemella_morbillorum_homd_HMT_046 GCA_905371815.1 HMT-130 SRR9217391-mag-bin.9 Named Cultivated Oral (Abundance: Medium) HMT-130 Selenomonas noxia SRR9217391-mag-bin.9 18 1988923 yes 56.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/815/GCA_905371815.1_SRR9217391-mag-bin.9 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda noxia PRJEB43277 135083 SAMEA8395098 SRR9217391-mag-bin.9 Contig 2021-03-24T08:55:21.483 not provided not provided EMG 54.0x 98.68 99.65 0 99.99 0.16 GCF_905371815.1 CAJPMT01 1865 1941 1941 18 3 54 1 Selenomonas_noxia_homd_HMT_130 GCA_905371825.1 HMT-686 SRR9217392-mag-bin.12 Named Cultivated Oral (Abundance: Medium) HMT-686 Streptococcus mutans SRR9217392-mag-bin.12 45 1976835 yes 36.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/825/GCA_905371825.1_SRR9217392-mag-bin.12 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus mutans PRJEB43277 1309 SAMEA8395115 SRR9217392-mag-bin.12 Contig 2021-03-24T08:55:22.233 not provided not provided EMG 125.0x 99.13 98.88 0 99.99 0.07 CAJPMU01 1886 1955 1955 44 0 24 1 Streptococcus_mutans_homd_HMT_686 GCA_905371835.1 HMT-723 SRR9217392-mag-bin.20 Named Cultivated Oral (Abundance: High) HMT-723 Lancefieldella parvula SRR9217392-mag-bin.20 188 1047741 yes 46.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/835/GCA_905371835.1_SRR9217392-mag-bin.20 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__Lancefieldella parvula PRJEB43277 521095 SAMEA8395122 SRR9217392-mag-bin.20 Contig 2021-03-24T08:55:22.470 not provided not provided EMG 17.0x 96.47 74.84 0.88 65.85 2.14 CAJPNB01 918 958 958 5 2 33 0 Lancefieldella_parvula_homd_HMT_723 GCA_905371855.1 HMT-161 SRR9217392-mag-bin.10 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula SRR9217392-mag-bin.10 19 2064386 yes 38.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/855/GCA_905371855.1_SRR9217392-mag-bin.10 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_H PRJEB43277 29466 SAMEA8395113 SRR9217392-mag-bin.10 Contig 2021-03-24T08:55:22.156 not provided not provided EMG 113.0x 96.07 100 0 99.99 0.25 GCF_905371855.1 CAJPMQ01 1902 1969 1969 22 0 44 1 Veillonella_parvula_homd_HMT_161 GCA_905371905.1 HMT-807 SRR9217392-mag-bin.5 Unnamed Cultivated Oral (Abundance: Medium) HMT-807 Olsenella sp. HMT-807 SRR9217392-mag-bin.5 126 2803860 yes 61.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/905/GCA_905371905.1_SRR9217392-mag-bin.5 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_F;s__Olsenella_F sp001189515 PRJEB43277 712411 SAMEA8395108 SRR9217392-mag-bin.5 Contig 2021-03-24T08:55:21.983 not provided not provided EMG 36.0x 100 1.21 98.88 0.47 CAJPMW01 2483 2538 2538 9 0 45 1 Olsenella_sp_HMT_807_homd_HMT_807 GCA_905371915.1 HMT-180 SRR9217392-mag-bin.16 Unnamed Cultivated Oral (Abundance: Medium) HMT-180 Schaalia sp. HMT-180 SRR9217392-mag-bin.16 100 2368306 yes 66.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/915/GCA_905371915.1_SRR9217392-mag-bin.16 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000185285 PRJEB43277 651609 SAMEA8395119 SRR9217392-mag-bin.16 Contig 2021-03-24T08:55:22.373 not provided not provided EMG 36.0x 99.05 0.47 100 0.19 CAJPMV01 2081 2138 2138 10 0 46 1 Schaalia_sp_HMT_180_homd_HMT_180 GCA_905371925.1 HMT-891 SRR9217392-mag-bin.14 Named Cultivated Vaginal (Abundance: Medium) HMT-891 Bifidobacterium scardovii SRR9217392-mag-bin.14 119 3023256 yes 64.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/925/GCA_905371925.1_SRR9217392-mag-bin.14 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium scardovii PRJEB43277 158787 SAMEA8395117 SRR9217392-mag-bin.14 Contig 2021-03-24T08:55:22.296 not provided not provided EMG 18.0x 99.21 99.27 2.15 99.43 0.51 GCF_905371925.1 CAJPMS01 2423 2490 2490 13 0 53 1 Bifidobacterium_scardovii_homd_HMT_891 GCA_905371935.1 HMT-338 SRR9217392-mag-bin.11 Unnamed Cultivated Oral (Abundance: Medium) HMT-338 Capnocytophaga sp. HMT-338 SRR9217392-mag-bin.11 265 1632811 yes 37.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/935/GCA_905371935.1_SRR9217392-mag-bin.11 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sp000192225 PRJEB43277 710239 SAMEA8395114 SRR9217392-mag-bin.11 Contig 2021-03-24T08:55:22.203 not provided not provided EMG 9.0x 76.33 0 70.81 0.1 CAJPNH01 1432 1457 1457 4 0 20 1 Capnocytophaga_sp_HMT_338_homd_HMT_338 GCA_905371945.1 HMT-136 SRR9217392-mag-bin.7 Named NVP** Cultivated Oral (Abundance: Medium) HMT-136 Selenomonas felix SRR9217392-mag-bin.7 83 2494191 yes 56.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/945/GCA_905371945.1_SRR9217392-mag-bin.7 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda felix PRJEB43277 1944634 SAMEA8395110 SRR9217392-mag-bin.7 Contig 2021-03-24T08:55:22.060 not provided not provided EMG 85.0x 97.78 98.84 0.74 99.92 1.08 GCF_905371945.1 CAJPMR01 2345 2414 2414 19 2 47 1 Selenomonas_felix_homd_HMT_136 GCA_905371955.1 HMT-586 SRR9217392-mag-bin.18 Named Cultivated Oral (Abundance: Scarce) HMT-586 Parascardovia denticolens SRR9217392-mag-bin.18 22 1849033 yes 58.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/955/GCA_905371955.1_SRR9217392-mag-bin.18 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia denticolens PRJEB43277 78258 SAMEA8395121 SRR9217392-mag-bin.18 Contig 2021-03-24T08:55:22.436 not provided not provided EMG 76.0x 99.02 99.24 0 99.9 0.16 CAJPMY01 1499 1571 1571 6 0 65 1 Parascardovia_denticolens_homd_HMT_586 GCA_905371985.1 HMT-700 SRR9217392-mag-bin.8 Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea SRR9217392-mag-bin.8 149 2549426 yes 39.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/371/985/GCA_905371985.1_SRR9217392-mag-bin.8 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJEB43277 1018 SAMEA8395111 SRR9217392-mag-bin.8 Contig 2021-03-24T08:55:22.093 not provided not provided EMG 20.0x 96.55 98.57 0 99.98 0.02 GCF_905371985.1 CAJPNJ01 2151 2196 2196 9 0 35 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_905372005.1 HMT-363 SRR9217393-mag-bin.4 Named Cultivated Oral (Abundance: Low) HMT-363 Fretibacterium fastidiosum SRR9217393-mag-bin.4 311 1870214 yes 64.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/005/GCA_905372005.1_SRR9217393-mag-bin.4 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Aminobacteriaceae;g__Fretibacterium;s__Fretibacterium fastidiosum PRJEB43277 651822 SAMEA8395124 SRR9217393-mag-bin.4 Contig 2021-03-24T08:55:22.546 not provided not provided EMG 18.0x 98.36 73.68 0.85 72.58 0.37 CAJPNY01 1680 1718 1718 11 0 27 0 Fretibacterium_fastidiosum_homd_HMT_363 GCA_905372015.1 HMT-694 SRR9217393-mag-bin.6 Named Cultivated Oral (Abundance: Medium) HMT-694 Hornefia nodatum SRR9217393-mag-bin.6 94 1840341 yes 38.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/015/GCA_905372015.1_SRR9217393-mag-bin.6 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Hornefia;s__Hornefia nodata PRJEB43277 35518 SAMEA8395125 SRR9217393-mag-bin.6 Contig 2021-03-24T08:55:22.593 not provided not provided EMG 41.0x 98.94 0.71 98.12 4.66 CAJPNO01 1671 1718 1718 22 1 23 1 Hornefia_nodatum_homd_HMT_694 GCA_905372045.1 HMT-303 SRR9217394-mag-bin.6 Named Cultivated Oral (Abundance: Medium) HMT-303 Hoylesella pleuritidis SRR9217394-mag-bin.6 77 2394927 yes 45.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/045/GCA_905372045.1_SRR9217394-mag-bin.6 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pleuritidis PRJEB43277 407975 SAMEA8395132 SRR9217394-mag-bin.6 Contig 2021-03-24T08:55:22.843 not provided not provided EMG 15.0x 98.77 98.2 0 99.98 0.04 GCF_905372045.1 CAJPNV01 1988 2039 2039 5 0 45 1 Hoylesella_pleuritidis_homd_HMT_303 GCA_905372065.1 HMT-619 SRR9217400-mag-bin.3 Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis SRR9217400-mag-bin.3 73 2180850 yes 48.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/065/GCA_905372065.1_SRR9217400-mag-bin.3 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB43277 837 SAMEA8395139 SRR9217400-mag-bin.3 Contig 2021-03-24T08:55:23.110 not provided not provided EMG 119.0x 98.64 99.92 0 99.98 0.02 CAJPNQ01 1833 1891 1891 10 2 45 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_905372075.1 HMT-587 SRR9217400-mag-bin.11 Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa SRR9217400-mag-bin.11 63 2480934 yes 53.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/075/GCA_905372075.1_SRR9217400-mag-bin.11 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJEB43277 2047 SAMEA8395142 SRR9217400-mag-bin.11 Contig 2021-03-24T08:55:23.203 not provided not provided EMG 28.0x 96.66 98.9 1.77 99.98 0.61 GCF_905372075.1 CAJPNU01 2100 2158 2158 12 2 43 1 Rothia_dentocariosa_homd_HMT_587 GCA_905372085.1 HMT-439 SRR9217393-mag-bin.14 Unnamed Cultivated Oral (Abundance: Scarce) HMT-439 Anaerolineae [G1] bacterium HMT-439 SRR9217393-mag-bin.14 229 2554535 yes 55.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/085/GCA_905372085.1_SRR9217393-mag-bin.14 d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Flexilinea;s__Flexilinea sp001717545 PRJEB43277 1889813 SAMEA8395129 SRR9217393-mag-bin.14 Contig 2021-03-24T08:55:22.720 not provided not provided EMG 26.0x 92.42 1.9 91.84 0.25 CAJPNW01 2207 2260 2260 8 0 44 1 Anaerolineae__G1__bacterium_HMT_439_homd_HMT_439 GCA_905372125.1 HMT-273 SRR9217394-mag-bin.3 Named Cultivated Oral (Abundance: High) HMT-273 Porphyromonas endodontalis SRR9217394-mag-bin.3 35 1949330 yes 47.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/125/GCA_905372125.1_SRR9217394-mag-bin.3 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas endodontalis PRJEB43277 28124 SAMEA8395131 SRR9217394-mag-bin.3 Contig 2021-03-24T08:55:22.796 not provided not provided EMG 16.0x 96.32 99.14 0 97.07 0.1 GCF_905372125.1 CAJPNL01 1613 1665 1665 8 0 43 1 Porphyromonas_endodontalis_homd_HMT_273 GCA_905372145.1 HMT-595 SRR9217399-mag-bin.13 Named Cultivated Oral (Abundance: High) HMT-595 Corynebacterium durum SRR9217399-mag-bin.13 221 2182802 yes 57.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/145/GCA_905372145.1_SRR9217399-mag-bin.13 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium durum PRJEB43277 61592 SAMEA8395137 SRR9217399-mag-bin.13 Contig 2021-03-24T08:55:23.030 not provided not provided EMG 41.0x 98.8 86.38 0.68 86.77 0.1 CAJPOA01 2119 2163 2163 12 0 31 1 Corynebacterium_durum_homd_HMT_595 GCA_905372215.1 HMT-682 SRR9217402-mag-bin.1 Named Cultivated Oral (Abundance: High) HMT-682 Neisseria mucosa SRR9217402-mag-bin.1 161 2431597 yes 51.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/215/GCA_905372215.1_SRR9217402-mag-bin.1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria mucosa PRJEB43277 1581124 SAMEA8395145 SRR9217402-mag-bin.1 Contig 2021-03-24T08:55:23.310 not provided not provided EMG 62.0x 96.81 0 99.97 0 CAJPOI01 2226 2286 2286 17 0 42 1 Neisseria_mucosa_homd_HMT_682 GCA_905372245.1 HMT-291 SRR9217404-mag-bin.10 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola SRR9217404-mag-bin.10 202 2600842 yes 51.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/245/GCA_905372245.1_SRR9217404-mag-bin.10 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJEB43277 28129 SAMEA8395152 SRR9217404-mag-bin.10 Contig 2021-03-24T08:55:23.560 not provided not provided EMG 10.0x 98.26 95.53 0.62 90.65 0.13 GCF_905372245.1 CAJPOG01 2068 2105 2105 9 0 28 0 Prevotella_denticola_homd_HMT_291 GCA_905372255.1 HMT-643 SRR9217404-mag-bin.8 Named Cultivated Oral (Abundance: High) HMT-643 Prevotella intermedia SRR9217404-mag-bin.8 75 2550728 yes 43.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/255/GCA_905372255.1_SRR9217404-mag-bin.8 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella intermedia PRJEB43277 28131 SAMEA8395150 SRR9217404-mag-bin.8 Contig 2021-03-24T08:55:23.500 not provided not provided EMG 42.0x 96.47 99.32 0 99.94 0.08 CAJPOK01 2171 2224 2224 10 0 42 1 Prevotella_intermedia_homd_HMT_643 GCA_905372295.1 HMT-759 SRR9217404-mag-bin.16 Named Cultivated Oral (Abundance: Scarce) "HMT-759 Peptostreptococcaceae [G5 ""Eubacterium""] saphenum SRR9217404-mag-bin.16" 111 577738 yes 41.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/295/GCA_905372295.1_SRR9217404-mag-bin.16 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_N;s__Eubacterium_N saphenum PRJEB43277 51123 SAMEA8395154 SRR9217404-mag-bin.16 Contig 2021-03-24T08:55:23.623 not provided not provided EMG 7.0x 56.94 0.71 57.72 0.16 CAJPOO01 506 523 523 7 0 9 1 Anaerovoracaceae__G5__saphenum_homd_HMT_759 GCA_905372315.1 HMT-726 SRR9217414-mag-bin.16 Named Cultivated Oral (Abundance: Low) HMT-726 Centipeda periodontii SRR9217414-mag-bin.16 173 2403355 yes 56.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/315/GCA_905372315.1_SRR9217414-mag-bin.16 Undefined PRJEB43277 82203 SAMEA8395170 SRR9217414-mag-bin.16 Contig 2021-03-24T08:55:24.203 not provided not provided EMG 57.0x 98.23 GCF_905372315.1 CAJPOY01 2266 2315 2315 20 0 28 1 Centipeda_periodontii_homd_HMT_726 GCA_905372325.1 HMT-279 SRR9217406-mag-bin.1 Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri SRR9217406-mag-bin.1 157 2168486 yes 55.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/325/GCA_905372325.1_SRR9217406-mag-bin.1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJEB43277 322095 SAMEA8395156 SRR9217406-mag-bin.1 Contig 2021-03-24T08:55:23.720 not provided not provided EMG 27.0x 79.98 97.62 0 99.8 0.12 CAJPOX01 1651 1705 1705 9 0 44 1 Porphyromonas_pasteri_homd_HMT_279 GCA_905372375.1 HMT-317 SRR9217414-mag-bin.19 Unnamed Cultivated Oral (Abundance: High) HMT-317 Hoylesella sp. HMT-317 SRR9217414-mag-bin.19 256 3132726 yes 47.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/375/GCA_905372375.1_SRR9217414-mag-bin.19 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella conceptionensis PRJEB43277 340486 SAMEA8395172 SRR9217414-mag-bin.19 Contig 2021-03-24T08:55:24.280 not provided not provided EMG 79.0x 92.09 0.34 86.17 0.63 CAJPPB01 2471 2509 2509 7 0 30 1 Hoylesella_sp_HMT_317_homd_HMT_317 GCA_905372395.1 HMT-121 SRR9217414-mag-bin.3 Named Cultivated Oral (Abundance: Medium) HMT-121 Anaeroglobus geminatus SRR9217414-mag-bin.3 30 1760181 yes 48.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/395/GCA_905372395.1_SRR9217414-mag-bin.3 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus geminatus PRJEB43277 156456 SAMEA8395163 SRR9217414-mag-bin.3 Contig 2021-03-24T08:55:23.970 not provided not provided EMG 119.0x 100 0.07 99.86 0.03 CAJPOR01 1643 1714 1714 25 0 45 1 Anaeroglobus_geminatus_homd_HMT_121 GCA_905372415.1 HMT-539 SRR9217404-mag-bin.5 Named Cultivated Oral (Abundance: Medium) HMT-539 Filifactor alocis SRR9217404-mag-bin.5 212 1790812 yes 35.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/415/GCA_905372415.1_SRR9217404-mag-bin.5 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Filifactor;s__Filifactor alocis PRJEB43277 143361 SAMEA8395147 SRR9217404-mag-bin.5 Contig 2021-03-24T08:55:23.390 not provided not provided EMG 15.0x 97.87 91.55 0.35 85.12 0.51 GCF_905372415.1 CAJPOV01 1612 1649 1649 27 0 9 1 Filifactor_alocis_homd_HMT_539 GCA_905372425.1 HMT-289 SRR9217414-mag-bin.15 Named Cultivated Oral (Abundance: Medium) HMT-289 Segatella maculosa SRR9217414-mag-bin.15 165 2693241 yes 48.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/425/GCA_905372425.1_SRR9217414-mag-bin.15 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella maculosa PRJEB43277 439703 SAMEA8395169 SRR9217414-mag-bin.15 Contig 2021-03-24T08:55:24.140 not provided not provided EMG 16.0x 97.59 97.02 0 92.65 0 GCF_905372425.1 CAJPPA01 2191 2229 2229 6 0 31 1 Segatella_maculosa_homd_HMT_289 GCA_905372435.1 HMT-466 SRR9217408-mag-bin.13 Named Cultivated Oral (Abundance: Medium) HMT-466 Alloprevotella tannerae SRR9217408-mag-bin.13 56 2468476 yes 46.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/435/GCA_905372435.1_SRR9217408-mag-bin.13 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella tannerae PRJEB43277 76122 SAMEA8395162 SRR9217408-mag-bin.13 Contig 2021-03-24T08:55:23.936 not provided not provided EMG 401.0x 96.79 98.5 0 99.96 0.04 GCF_905372435.1 CAJPOW01 2074 2125 2125 4 2 44 1 Alloprevotella_tannerae_homd_HMT_466 GCA_905372455.1 HMT-288 SRR9217414-mag-bin.4 Named Cultivated Oral (Abundance: Medium) HMT-288 Segatella oulorum SRR9217414-mag-bin.4 142 2509114 yes 47.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/455/GCA_905372455.1_SRR9217414-mag-bin.4 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oulorum PRJEB43277 28136 SAMEA8395164 SRR9217414-mag-bin.4 Contig 2021-03-24T08:55:24.000 not provided not provided EMG 27.0x 97.42 96.9 0.42 94.57 0.51 GCF_905372455.1 CAJPPD01 2109 2157 2157 9 0 38 1 Segatella_oulorum_homd_HMT_288 GCA_905372475.1 HMT-194 SRR9217422-mag-bin.6 Named Cultivated Oral (Abundance: High) HMT-194 Arachnia rubra SRR9217422-mag-bin.6 157 3115083 yes 64.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/475/GCA_905372475.1_SRR9217422-mag-bin.6 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia rubra PRJEB43277 2021380 SAMEA8395181 SRR9217422-mag-bin.6 Contig 2021-03-24T08:55:24.576 not provided not provided EMG 37.0x 90.79 0.7 93.75 0.8 CAJPPP01 2819 2885 2885 18 0 46 2 Arachnia_rubra_homd_HMT_194 GCA_905372485.1 HMT-274 SRR9217416-mag-bin.1 Unnamed Cultivated Oral (Abundance: High) HMT-274 Paludibacteraceae [G1] bacterium HMT-274 SRR9217416-mag-bin.1 29 2138627 yes 43.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/485/GCA_905372485.1_SRR9217416-mag-bin.1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__F0058;s__F0058 sp000163695 PRJEB43277 652708 SAMEA8395178 SRR9217416-mag-bin.1 Contig 2021-03-24T08:55:24.483 not provided not provided EMG 84.0x 98.39 0.54 99.73 1.18 CAJPPW01 1944 1998 1998 13 2 38 1 Paludibacteraceae__G1__bacterium_HMT_274_homd_HMT_274 GCA_905372505.1 HMT-124 SRR9217423-mag-bin.5 Named Cultivated Oral (Abundance: Low) HMT-124 Selenomonas artemidis SRR9217423-mag-bin.5 42 2301587 yes 57.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/505/GCA_905372505.1_SRR9217423-mag-bin.5 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda artemidis PRJEB43277 671224 SAMEA8395185 SRR9217423-mag-bin.5 Contig 2021-03-24T08:55:24.703 not provided not provided EMG 23.0x 97.21 99.65 0.58 99.51 0.28 GCF_905372505.1 CAJPPM01 2115 2182 2182 17 0 49 1 Selenomonas_artemidis_homd_HMT_124 GCA_905372535.1 HMT-329 SRR9217414-mag-bin.5 Named Cultivated Oral (Abundance: High) HMT-329 Capnocytophaga leadbetteri SRR9217414-mag-bin.5 157 2591175 yes 40.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/535/GCA_905372535.1_SRR9217414-mag-bin.5 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga leadbetteri_A PRJEB43277 327575 SAMEA8395165 SRR9217414-mag-bin.5 Contig 2021-03-24T08:55:24.046 not provided not provided EMG 27.0x 95.76 98.1 0 99.98 0.36 GCF_905372535.1 CAJPPO01 2351 2392 2392 7 0 33 1 Capnocytophaga_leadbetteri_homd_HMT_329 GCA_905372545.1 HMT-014 SRR9217415-mag-bin.5 Named Cultivated Oral (Abundance: Medium) HMT-014 Neisseria oralis SRR9217415-mag-bin.5 21 2461449 yes 52.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/545/GCA_905372545.1_SRR9217415-mag-bin.5 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria oralis PRJEB43277 641148 SAMEA8395176 SRR9217415-mag-bin.5 Contig 2021-03-24T08:55:24.420 not provided not provided EMG 361.0x 99.21 0.34 100 0.21 GCF_905372545.1 CAJPPI01 2241 2425 2425 132 0 50 2 Neisseria_oralis_homd_HMT_014 GCA_905372625.1 HMT-534 SRR9217422-mag-bin.10 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens SRR9217422-mag-bin.10 60 1843481 yes 37.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/625/GCA_905372625.1_SRR9217422-mag-bin.10 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJEB43277 46124 SAMEA8395182 SRR9217422-mag-bin.10 Contig 2021-03-24T08:55:24.610 not provided not provided EMG 16.0x 96.27 98.04 0 98.43 0.53 GCF_905372625.1 CAJPPH01 1770 1821 1821 33 1 16 1 Granulicatella_adiacens_homd_HMT_534 GCA_905372645.1 HMT-419 SRR9217423-mag-bin.14 Named Cultivated Oral (Abundance: Medium) HMT-419 Stomatobaculum longum SRR9217423-mag-bin.14 149 2028958 yes 55.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/645/GCA_905372645.1_SRR9217423-mag-bin.14 d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Moryella;s__Moryella longum PRJEB43277 796942 SAMEA8395191 SRR9217423-mag-bin.14 Contig 2021-03-24T08:55:24.953 not provided not provided EMG 10.0x 97.58 94.62 0 98.6 0 GCF_905372645.1 CAJPPX01 1841 1892 1892 11 0 39 1 Stomatobaculum_longum_homd_HMT_419 GCA_905372655.1 HMT-337 SRR9217415-mag-bin.1 Named Cultivated Oral (Abundance: High) HMT-337 Capnocytophaga gingivalis SRR9217415-mag-bin.1 162 2556787 yes 40.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/655/GCA_905372655.1_SRR9217415-mag-bin.1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga gingivalis PRJEB43277 1017 SAMEA8395175 SRR9217415-mag-bin.1 Contig 2021-03-24T08:55:24.373 not provided not provided EMG 52.0x 96.65 98.57 0.48 99.17 1.89 GCF_905372655.1 CAJPPZ01 2377 2422 2422 5 1 38 1 Capnocytophaga_gingivalis_homd_HMT_337 GCA_905372665.1 HMT-311 SRR9217416-mag-bin.2 Named Cultivated Oral (Abundance: High) HMT-311 Segatella oris SRR9217416-mag-bin.2 125 2878378 yes 43.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/665/GCA_905372665.1_SRR9217416-mag-bin.2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oris PRJEB43277 28135 SAMEA8395179 SRR9217416-mag-bin.2 Contig 2021-03-24T08:55:24.516 not provided not provided EMG 14.0x 97.87 98.99 0 99.77 0.07 GCF_905372665.1 CAJPPY01 2381 2432 2432 8 1 41 1 Segatella_oris_homd_HMT_311 GCA_905372675.1 HMT-781 SRR9217428-mag-bin.33 Named Cultivated Oral (Abundance: Medium) HMT-781 Hoylesella saccharolytica SRR9217428-mag-bin.33 73 2409554 yes 43.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/675/GCA_905372675.1_SRR9217428-mag-bin.33 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella saccharolytica PRJEB43277 633701 SAMEA8395212 SRR9217428-mag-bin.33 Contig 2021-03-24T08:55:25.686 not provided not provided EMG 32.0x 96.68 77.05 0.68 78.58 0.01 GCF_905372675.1 CAJPQO01 1927 1956 1956 2 0 26 1 Hoylesella_saccharolytica_homd_HMT_781 GCA_905372685.1 HMT-278 SRR9217428-mag-bin.34 Unnamed Cultivated Oral (Abundance: Medium) HMT-278 Porphyromonas sp. HMT-278 SRR9217428-mag-bin.34 39 2250639 yes 55.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/685/GCA_905372685.1_SRR9217428-mag-bin.34 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas sp000467855 PRJEB43277 712437 SAMEA8395213 SRR9217428-mag-bin.34 Contig 2021-03-24T08:55:25.733 not provided not provided EMG 66.0x 98.87 0.16 99.92 0.08 GCF_905372685.1 CAJPQN01 1800 1853 1853 8 2 42 1 Porphyromonas_sp_HMT_278_homd_HMT_278 GCA_905372695.1 HMT-188 SRR9217428-mag-bin.1 Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria SRR9217428-mag-bin.1 35 2587545 yes 56.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/695/GCA_905372695.1_SRR9217428-mag-bin.1 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJEB43277 172042 SAMEA8395193 SRR9217428-mag-bin.1 Contig 2021-03-24T08:55:25.016 not provided not provided EMG 56.0x 97.55 98.34 0 100 0.04 GCF_905372695.1 CAJPQC01 2215 2278 2278 13 3 46 1 Rothia_aeria_homd_HMT_188 GCA_905372705.1 HMT-183 SRR9217428-mag-bin.20 Unnamed Cultivated Oral (Abundance: Medium) HMT-183 Peptidiphaga sp. HMT-183 SRR9217428-mag-bin.20 66 2202127 yes 67.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/705/GCA_905372705.1_SRR9217428-mag-bin.20 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Peptidiphaga;s__Peptidiphaga sp000466165 PRJEB43277 712888 SAMEA8395205 SRR9217428-mag-bin.20 Contig 2021-03-24T08:55:25.453 not provided not provided EMG 37.0x 99.17 0 100 0.13 CAJPQB01 1845 1894 1894 5 0 43 1 Peptidiphaga_sp_HMT_183_homd_HMT_183 GCA_905372755.1 HMT-286 SRR9217428-mag-bin.24 Named Cultivated Oral (Abundance: Medium) HMT-286 Tannerella serpentiformis SRR9217428-mag-bin.24 141 2717455 yes 56.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/755/GCA_905372755.1_SRR9217428-mag-bin.24 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella serpentiformis PRJEB43277 712710 SAMEA8395207 SRR9217428-mag-bin.24 Contig 2021-03-24T08:55:25.530 not provided not provided EMG 226.0x 97.13 0 98.19 0.07 CAJPQS01 2249 2305 2305 12 2 41 1 Tannerella_serpentiformis_homd_HMT_286 GCA_905372775.1 HMT-176 SRR9217428-mag-bin.18 Named Cultivated Oral (Abundance: High) HMT-176 Actinomyces naeslundii SRR9217428-mag-bin.18 118 3041234 yes 68.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/775/GCA_905372775.1_SRR9217428-mag-bin.18 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces naeslundii PRJEB43277 1655 SAMEA8395204 SRR9217428-mag-bin.18 Contig 2021-03-24T08:55:25.420 not provided not provided EMG 100.0x 98.59 98.1 0.47 98.56 0.49 GCF_905372775.1 CAJPQD01 2550 2616 2616 16 2 47 1 Actinomyces_naeslundii_homd_HMT_176 GCA_905372815.1 HMT-714 SRR9217428-mag-bin.2 Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens SRR9217428-mag-bin.2 191 2977182 yes 37.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/815/GCA_905372815.1_SRR9217428-mag-bin.2 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJEB43277 60133 SAMEA8395194 SRR9217428-mag-bin.2 Contig 2021-03-24T08:55:25.046 not provided not provided EMG 31.0x 98.34 95.61 0 99.76 0.21 CAJPQL01 2471 2513 2513 10 0 31 1 Prevotella_pallens_homd_HMT_714 GCA_905372825.1 HMT-666 SRR9217428-mag-bin.17 Named Cultivated Oral (Abundance: High) HMT-666 Corynebacterium matruchotii SRR9217428-mag-bin.17 57 2925442 yes 57.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/825/GCA_905372825.1_SRR9217428-mag-bin.17 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium matruchotii PRJEB43277 43768 SAMEA8395203 SRR9217428-mag-bin.17 Contig 2021-03-24T08:55:25.390 not provided not provided EMG 261.0x 97 99.45 0 99.99 0.24 GCF_905372825.1 CAJPQJ01 2630 2692 2692 8 4 49 1 Corynebacterium_matruchotii_homd_HMT_666 GCA_905372845.1 HMT-458 SRR9217428-mag-bin.3 Unnamed Cultivated Oral (Abundance: Medium) HMT-458 Aggregatibacter sp. HMT-458 SRR9217428-mag-bin.3 173 1704279 yes 43.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/845/GCA_905372845.1_SRR9217428-mag-bin.3 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter sp000466335 PRJEB43277 712148 SAMEA8395195 SRR9217428-mag-bin.3 Contig 2021-03-24T08:55:25.093 not provided not provided EMG 10.0x 93.97 0 93.61 0.02 GCF_905372845.1 CAJPQM01 1559 1619 1619 32 1 26 1 Aggregatibacter_sp_HMT_458_homd_HMT_458 GCA_905372915.1 HMT-325 SRR9217433-mag-bin.7 Named Cultivated Oral (Abundance: Medium) HMT-325 Capnocytophaga granulosa SRR9217433-mag-bin.7 87 2588185 yes 41.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/915/GCA_905372915.1_SRR9217433-mag-bin.7 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga granulosa PRJEB43277 45242 SAMEA8395218 SRR9217433-mag-bin.7 Contig 2021-03-24T08:55:25.920 not provided not provided EMG 64.0x 96.9 100 0.48 99.86 0.27 GCF_905372915.1 CAJPRD01 2387 2436 2436 9 0 39 1 Capnocytophaga_granulosa_homd_HMT_325 GCA_905372935.1 HMT-579 SRR9217449-mag-bin.18 Named Cultivated Oral (Abundance: Scarce) HMT-579 Cryptobacterium curtum SRR9217449-mag-bin.18 149 1457245 yes 50.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/935/GCA_905372935.1_SRR9217449-mag-bin.18 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Cryptobacterium;s__Cryptobacterium curtum PRJEB43277 84163 SAMEA8395234 SRR9217449-mag-bin.18 Contig 2021-03-24T08:55:26.516 not provided not provided EMG 9.0x 98.14 86.56 0.07 81.85 0.75 GCF_905372935.1 CAJPRE01 1240 1286 1286 5 0 40 1 Cryptobacterium_curtum_homd_HMT_579 GCA_905372955.1 HMT-698 SRR9217441-mag-bin.4 Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto SRR9217441-mag-bin.4 255 1674058 yes 27.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/955/GCA_905372955.1_SRR9217441-mag-bin.4 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum_K PRJEB43277 851 SAMEA8395225 SRR9217441-mag-bin.4 Contig 2021-03-24T08:55:26.170 not provided not provided EMG 19.0x 95.38 91.57 0.05 87.08 0.01 CAJPRG01 1549 1600 1600 15 0 36 0 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_905372965.1 HMT-633 SRR9217435-mag-bin.6 Named Cultivated Oral (Abundance: High) HMT-633 Cardiobacterium hominis SRR9217435-mag-bin.6 219 2340265 yes 59.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/965/GCA_905372965.1_SRR9217435-mag-bin.6 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium hominis PRJEB43277 2718 SAMEA8395222 SRR9217435-mag-bin.6 Contig 2021-03-24T08:55:26.063 not provided not provided EMG 18.0x 95.2 94.75 0.88 87.02 0.71 CAJPRL01 2183 2233 2233 9 0 40 1 Cardiobacterium_hominis_homd_HMT_633 GCA_905372985.1 HMT-693 SRR9217449-mag-bin.15 Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens SRR9217449-mag-bin.15 92 2490701 yes 42.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/985/GCA_905372985.1_SRR9217449-mag-bin.15 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJEB43277 28133 SAMEA8395233 SRR9217449-mag-bin.15 Contig 2021-03-24T08:55:26.470 not provided not provided EMG 24.0x 98.47 99.19 0.27 98.06 0.86 GCF_905372985.1 CAJPQZ01 2111 2150 2150 7 0 31 1 Prevotella_nigrescens_homd_HMT_693 GCA_905372995.1 HMT-427 SRR9217435-mag-bin.2 Unnamed Cultivated Oral (Abundance: Medium) HMT-427 Abiotrophia sp. HMT-427 SRR9217435-mag-bin.2 142 1841231 yes 46.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/995/GCA_905372995.1_SRR9217435-mag-bin.2 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;s__Abiotrophia sp001815865 PRJEB43277 1581061 SAMEA8395220 SRR9217435-mag-bin.2 Contig 2021-03-24T08:55:26.000 not provided not provided EMG 10.0x 94.82 0.62 94.7 0.53 GCF_905372995.1 CAJPRA01 1672 1717 1717 20 0 24 1 Abiotrophia_sp_HMT_427_homd_HMT_427 GCA_905373015.1 HMT-144 SRR9217449-mag-bin.11 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 SRR9217449-mag-bin.11 181 3114517 yes 68.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/015/GCA_905373015.1_SRR9217449-mag-bin.11 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJEB43277 544580 SAMEA8395232 SRR9217449-mag-bin.11 Contig 2021-03-24T08:55:26.436 not provided not provided EMG 23.0x 92.88 98.51 0.63 99.95 0.21 GCF_905373015.1 CAJPRK01 2566 2633 2633 14 0 52 1 Actinomyces_oris_clade_144_homd_HMT_144 GCA_905373015.1 HMT-144 SRR9217449-mag-bin.11 Named Cultivated Oral (Abundance: Medium) HMT-144 Actinomyces oris clade-144 SRR9217449-mag-bin.11 181 3114517 yes 68.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/015/GCA_905373015.1_SRR9217449-mag-bin.11 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces acetigenes PRJEB43277 544580 SAMEA8395232 SRR9217449-mag-bin.11 Contig 2021-03-24T08:55:26.436 not provided not provided EMG 23.0x 92.88 98.51 0.63 99.95 0.21 GCF_905373015.1 CAJPRK01 2566 2633 2633 14 0 52 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_905373025.1 HMT-178 SRR9217433-mag-bin.5 Named Cultivated Oral (Abundance: Low) HMT-178 Schaalia hongkongensis SRR9217433-mag-bin.5 240 2355993 yes 70.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/025/GCA_905373025.1_SRR9217433-mag-bin.5 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia hongkongensis PRJEB43277 249061 SAMEA8395217 SRR9217433-mag-bin.5 Contig 2021-03-24T08:55:25.890 not provided not provided EMG 55.0x 90.55 0.47 86.8 0.54 CAJPRI01 2011 2060 2060 6 0 42 1 Schaalia_hongkongensis_homd_HMT_178 GCA_905373045.1 HMT-022 SRR9217430-mag-bin.2 Named Cultivated Oral (Abundance: High) HMT-022 Lautropia mirabilis SRR9217430-mag-bin.2 68 3015813 yes 65.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/045/GCA_905373045.1_SRR9217430-mag-bin.2 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia mirabilis PRJEB43277 47671 SAMEA8395215 SRR9217430-mag-bin.2 Contig 2021-03-24T08:55:25.813 not provided not provided EMG 32.0x 96.59 98.05 0.12 99.28 0.05 GCF_905373045.1 CAJPQY01 2444 2500 2500 12 0 44 0 Lautropia_mirabilis_homd_HMT_022 GCA_905373065.1 HMT-603 SRR9217449-mag-bin.2 Named Cultivated Oral (Abundance: Medium) HMT-603 Bulleidia extructa SRR9217449-mag-bin.2 94 1266912 yes 36.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/065/GCA_905373065.1_SRR9217449-mag-bin.2 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia;s__Bulleidia extructa PRJEB43277 118748 SAMEA8395227 SRR9217449-mag-bin.2 Contig 2021-03-24T08:55:26.233 not provided not provided EMG 11.0x 98.96 91.43 0.95 93.06 3.42 GCF_905373065.1 CAJPRC01 1203 1258 1258 16 0 39 0 Bulleidia_extructa_homd_HMT_603 GCA_905373095.1 HMT-850 SRR9217449-mag-bin.7 Named Cultivated Oral (Abundance: Scarce) HMT-850 Schaalia cardiffensis SRR9217449-mag-bin.7 86 2144927 yes 61.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/095/GCA_905373095.1_SRR9217449-mag-bin.7 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia cardiffensis PRJEB43277 181487 SAMEA8395231 SRR9217449-mag-bin.7 Contig 2021-03-24T08:55:26.373 not provided not provided EMG 17.0x 97.05 97.3 2.25 99.67 0.91 GCF_905373095.1 CAJPRS01 1818 1870 1870 10 0 41 1 Schaalia_cardiffensis_homd_HMT_850 GCA_905373115.1 HMT-199 SRR9217449-mag-bin.6 Unnamed Cultivated Oral (Abundance: Scarce) HMT-199 Lancefieldella sp. HMT-199 SRR9217449-mag-bin.6 28 1652381 yes 51.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/115/GCA_905373115.1_SRR9217449-mag-bin.6 d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__Lancefieldella sp000411555 PRJEB43277 712156 SAMEA8395230 SRR9217449-mag-bin.6 Contig 2021-03-24T08:55:26.343 not provided not provided EMG 65.0x 100 4.03 99.79 3.78 CAJPRO01 1471 1523 1523 6 5 41 0 Lancefieldella_sp_HMT_199_homd_HMT_199 GCA_905373135.1 HMT-577 SRR9217453-mag-bin.5 Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens SRR9217453-mag-bin.5 105 2070314 yes 55.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/135/GCA_905373135.1_SRR9217453-mag-bin.5 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJEB43277 539 SAMEA8395242 SRR9217453-mag-bin.5 Contig 2021-03-24T08:55:26.796 not provided not provided EMG 44.0x 96.56 91.56 0.23 95.64 0.57 GCF_905373135.1 CAJPRZ01 1959 2004 2004 8 0 36 1 Eikenella_corrodens_homd_HMT_577 GCA_905373145.1 HMT-448 SRR9217457-mag-bin.3 Unnamed Cultivated Oral (Abundance: Medium) HMT-448 Actinomyces sp. HMT-448 SRR9217457-mag-bin.3 246 2674657 yes 69.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/145/GCA_905373145.1_SRR9217457-mag-bin.3 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp000220835 PRJEB43277 712124 SAMEA8395248 SRR9217457-mag-bin.3 Contig 2021-03-24T08:55:27.016 not provided not provided EMG 25.0x 96.47 1.26 99.77 0.11 GCF_905373145.1 CAJPSA01 2264 2321 2321 14 0 42 1 Actinomyces_sp_HMT_448_homd_HMT_448 GCA_905373155.1 HMT-191 SRR9217457-mag-bin.5 Named Cultivated Oral (Abundance: Scarce) HMT-191 Propionibacterium acidifaciens SRR9217457-mag-bin.5 113 2841507 yes 71.24 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/155/GCA_905373155.1_SRR9217457-mag-bin.5 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionibacterium;s__Propionibacterium acidifaciens PRJEB43277 556499 SAMEA8395250 SRR9217457-mag-bin.5 Contig 2021-03-24T08:55:27.110 not provided not provided EMG 988.0x 99.59 98.46 0.33 100 0.58 GCF_905373155.1 CAJPSC01 2395 2466 2466 22 0 48 1 Propionibacterium_acidifaciens_homd_HMT_191 GCA_905373165.1 HMT-195 SRR9217451-mag-bin.9 Named Cultivated Oral (Abundance: Medium) HMT-195 Scardovia wiggsiae SRR9217451-mag-bin.9 12 1500032 yes 53.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/165/GCA_905373165.1_SRR9217451-mag-bin.9 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia;s__Scardovia wiggsiae PRJEB43277 230143 SAMEA8395236 SRR9217451-mag-bin.9 Contig 2021-03-24T08:55:26.576 not provided not provided EMG 70.0x 96.98 96.51 0.15 95.66 0.12 GCF_905373165.1 CAJPRY01 1207 1259 1259 6 0 45 1 Scardovia_wiggsiae_homd_HMT_195 GCA_905373225.1 HMT-161 SRR9217454-mag-bin.8 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula SRR9217454-mag-bin.8 25 1972424 yes 38.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/225/GCA_905373225.1_SRR9217454-mag-bin.8 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJEB43277 29466 SAMEA8395245 SRR9217454-mag-bin.8 Contig 2021-03-24T08:55:26.906 not provided not provided EMG 42.0x 97.06 100 0 99.99 0.19 GCF_905373225.1 CAJPRU01 1766 1824 1824 21 0 36 1 Veillonella_parvula_homd_HMT_161 GCA_905373255.1 HMT-131 SRR9217457-mag-bin.4 Unnamed Cultivated Oral (Abundance: Scarce) HMT-131 Mitsuokella sp. HMT-131 SRR9217457-mag-bin.4 230 2128654 yes 56.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/255/GCA_905373255.1_SRR9217457-mag-bin.4 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__AWVT01;s__AWVT01 sp000469545 PRJEB43277 1321780 SAMEA8395249 SRR9217457-mag-bin.4 Contig 2021-03-24T08:55:27.046 not provided not provided EMG 25.0x 87.11 0.53 86.08 1.33 CAJPSD01 2028 2089 2089 18 0 42 1 Mitsuokella_sp_HMT_131_homd_HMT_131 GCA_905373265.1 HMT-775 SRR9217453-mag-bin.1 Named Cultivated Oral (Abundance: Medium) HMT-775 Capnocytophaga sputigena SRR9217453-mag-bin.1 89 2955558 yes 38.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/265/GCA_905373265.1_SRR9217453-mag-bin.1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena PRJEB43277 1019 SAMEA8395239 SRR9217453-mag-bin.1 Contig 2021-03-24T08:55:26.686 not provided not provided EMG 54.0x 96.12 99.97 0 99.41 0.07 GCF_905373265.1 CAJPRX01 2670 2709 2709 6 2 30 1 Capnocytophaga_sputigena_homd_HMT_775 GCA_905373335.1 HMT-169 SRR9217470-mag-bin.2 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 SRR9217470-mag-bin.2 240 2600283 yes 68.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/335/GCA_905373335.1_SRR9217470-mag-bin.2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJEB43277 544580 SAMEA8395266 SRR9217470-mag-bin.2 Contig 2021-03-24T08:55:27.780 not provided not provided EMG 56.0x 95.34 90.1 0.3 85.45 1.03 CAJPSZ01 2164 2219 2219 11 2 41 1 Actinomyces_oris_clade_169_homd_HMT_169 GCA_905373335.1 HMT-169 SRR9217470-mag-bin.2 Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 SRR9217470-mag-bin.2 240 2600283 yes 68.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/335/GCA_905373335.1_SRR9217470-mag-bin.2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJEB43277 544580 SAMEA8395266 SRR9217470-mag-bin.2 Contig 2021-03-24T08:55:27.780 not provided not provided EMG 56.0x 95.34 90.1 0.3 85.45 1.03 CAJPSZ01 2164 2219 2219 11 2 41 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_905373395.1 HMT-291 SRR9217464-mag-bin.5 Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola SRR9217464-mag-bin.5 42 2799231 yes 50.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/395/GCA_905373395.1_SRR9217464-mag-bin.5 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJEB43277 28129 SAMEA8395260 SRR9217464-mag-bin.5 Contig 2021-03-24T08:55:27.546 not provided not provided EMG 90.0x 98.19 99.32 0.08 99.87 0.21 GCF_905373395.1 CAJPSO01 2249 2305 2305 10 0 45 1 Prevotella_denticola_homd_HMT_291 GCA_905373405.1 HMT-678 SRR9217464-mag-bin.10 Named Cultivated Oral (Abundance: Medium) HMT-678 Solobacterium moorei SRR9217464-mag-bin.10 41 1928362 yes 37.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/405/GCA_905373405.1_SRR9217464-mag-bin.10 d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia;s__Bulleidia moorei PRJEB43277 102148 SAMEA8395263 SRR9217464-mag-bin.10 Contig 2021-03-24T08:55:27.686 not provided not provided EMG 19.0x 98.15 100 0.95 97.56 0.82 CAJPSQ01 1869 1932 1932 22 0 40 1 Solobacterium_moorei_homd_HMT_678 GCA_905373435.1 HMT-118 SRR9217464-mag-bin.4 Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus SRR9217464-mag-bin.4 76 1833164 yes 45.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/435/GCA_905373435.1_SRR9217464-mag-bin.4 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJEB43277 218538 SAMEA8395259 SRR9217464-mag-bin.4 Contig 2021-03-24T08:55:27.516 not provided not provided EMG 23.0x 97.8 98.1 0.63 99.97 0.11 GCF_905373435.1 CAJPSS01 1782 1872 1872 42 0 47 1 Dialister_invisus_homd_HMT_118 GCA_905373445.1 HMT-314 SRR9217464-mag-bin.6 Unnamed Cultivated Oral (Abundance: Medium) HMT-314 Prevotella sp. HMT-314 SRR9217464-mag-bin.6 212 2519807 yes 41.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/445/GCA_905373445.1_SRR9217464-mag-bin.6 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp000467895 PRJEB43277 1227276 SAMEA8395261 SRR9217464-mag-bin.6 Contig 2021-03-24T08:55:27.576 not provided not provided EMG 13.0x 92.12 0.51 87.99 0.13 GCF_905373445.1 CAJPSW01 1931 0 0 18 1 17 0 Prevotella_sp_HMT_314_homd_HMT_314 GCA_905373455.1 HMT-618 SRR9217472-mag-bin.2 Named Cultivated Oral (Abundance: Medium) HMT-618 Actinomyces gerencseriae SRR9217472-mag-bin.2 286 3131644 yes 70.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/455/GCA_905373455.1_SRR9217472-mag-bin.2 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces gerencseriae PRJEB43277 52769 SAMEA8395271 SRR9217472-mag-bin.2 Contig 2021-03-24T08:55:27.953 not provided not provided EMG 63.0x 98.49 92.81 1.18 95.89 2.42 GCF_905373455.1 CAJPSY01 2619 2677 2677 15 0 42 1 Actinomyces_gerencseriae_homd_HMT_618 GCA_905373465.1 HMT-212 SRR9217471-mag-bin.5 Unnamed Cultivated Oral (Abundance: Medium) HMT-212 Pseudoleptotrichia sp. HMT-212 SRR9217471-mag-bin.5 292 1514253 yes 32.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/465/GCA_905373465.1_SRR9217471-mag-bin.5 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia_A;s__Leptotrichia_A sp001274535 PRJEB43277 712357 SAMEA8395267 SRR9217471-mag-bin.5 Contig 2021-03-24T08:55:27.826 not provided not provided EMG 11.0x 69 1.69 67.49 0.39 CAJPTA01 1294 1320 1320 10 0 16 0 Pseudoleptotrichia_sp_HMT_212_homd_HMT_212 GCA_905373485.1 HMT-748 SRR9217473-mag-bin.5 Named Cultivated Oral (Abundance: Medium) HMT-748 Campylobacter rectus SRR9217473-mag-bin.5 263 2020017 yes 45.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/485/GCA_905373485.1_SRR9217473-mag-bin.5 d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A rectus PRJEB43277 203 SAMEA8395273 SRR9217473-mag-bin.5 Contig 2021-03-24T08:55:28.030 not provided not provided EMG 10.0x 96.18 91.07 0.43 87.64 0.06 GCF_905373485.1 CAJPTG01 1840 1883 1883 5 0 37 1 Campylobacter_rectus_homd_HMT_748 GCA_905373495.1 HMT-613 SRR9217473-mag-bin.6 Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia SRR9217473-mag-bin.6 93 2971623 yes 47.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/495/GCA_905373495.1_SRR9217473-mag-bin.6 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJEB43277 28112 SAMEA8395274 SRR9217473-mag-bin.6 Contig 2021-03-24T08:55:28.063 not provided not provided EMG 35.0x 98.74 98.91 0 98.88 0.01 GCF_905373495.1 CAJPTF01 2476 2543 2543 24 1 41 1 Tannerella_forsythia_homd_HMT_613 GCA_905373515.1 HMT-658 SRR9217473-mag-bin.9 Named Cultivated Oral (Abundance: Medium) HMT-658 Hoylesella loescheii SRR9217473-mag-bin.9 99 3296002 yes 46.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/515/GCA_905373515.1_SRR9217473-mag-bin.9 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella loescheii PRJEB43277 840 SAMEA8395276 SRR9217473-mag-bin.9 Contig 2021-03-24T08:55:28.123 not provided not provided EMG 78.0x 95.71 99.32 0 99.75 0 GCF_905373515.1 CAJPTE01 2546 2598 2598 7 0 43 2 Hoylesella_loescheii_homd_HMT_658 GCA_905373535.1 HMT-777 SRR9217479-mag-bin.5 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-777 Jonquetella anthropi SRR9217479-mag-bin.5 120 1598362 yes 59.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/535/GCA_905373535.1_SRR9217479-mag-bin.5 d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Jonquetella;s__Jonquetella anthropi PRJEB43277 428712 SAMEA8395283 SRR9217479-mag-bin.5 Contig 2021-03-24T08:55:28.406 not provided not provided EMG 11.0x 99.55 96.61 0.15 99.42 0.48 GCF_905373535.1 CAJPTJ01 1469 1530 1530 11 1 48 1 Jonquetella_anthropi_homd_HMT_777 GCA_905373545.1 HMT-376 SRR9217479-mag-bin.7 Unnamed Cultivated Oral (Abundance: Scarce) HMT-376 Hallella sp. HMT-376 SRR9217479-mag-bin.7 108 2528667 yes 50.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/545/GCA_905373545.1_SRR9217479-mag-bin.7 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella sp003043945 PRJEB43277 712466 SAMEA8395285 SRR9217479-mag-bin.7 Contig 2021-03-24T08:55:28.470 not provided not provided EMG 12.0x 97.51 1.02 98.02 1.36 CAJPTH01 2161 2207 2207 5 0 41 0 Hallella_sp_HMT_376_homd_HMT_376 GCA_905373595.1 HMT-272 SRR9217479-mag-bin.6 Named Cultivated Oral (Abundance: Scarce) HMT-272 Phocaeicola abscessus SRR9217479-mag-bin.6 139 2363197 yes 47.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/595/GCA_905373595.1_SRR9217479-mag-bin.6 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola abscessus PRJEB43277 555313 SAMEA8395284 SRR9217479-mag-bin.6 Contig 2021-03-24T08:55:28.436 not provided not provided EMG 11.0x 99.53 94.98 0.94 85.81 0.02 CAJPTI01 1965 2010 2010 8 0 36 1 Phocaeicola_abscessus_homd_HMT_272 GCA_905373635.1 HMT-173 SRR9217479-mag-bin.15 Named Cultivated Nasal (Abundance: Medium) HMT-173 Lawsonella clevelandensis SRR9217479-mag-bin.15 100 1785088 yes 58.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/635/GCA_905373635.1_SRR9217479-mag-bin.15 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Lawsonella;s__Lawsonella clevelandensis PRJEB43277 1528099 SAMEA8395290 SRR9217479-mag-bin.15 Contig 2021-03-24T08:55:28.640 not provided not provided EMG 16.0x 99.53 92.94 0 95.08 0.04 GCF_905373635.1 CAJPTR01 1578 1627 1627 6 4 38 1 Lawsonella_clevelandensis_homd_HMT_173 GCA_905373695.1 HMT-133 SRR9217487-mag-bin.14 Unnamed Cultivated Oral (Abundance: Scarce) HMT-133 Selenomonas sp. HMT-133 SRR9217487-mag-bin.14 196 2137020 yes 58.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/695/GCA_905373695.1_SRR9217487-mag-bin.14 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda sp000315545 PRJEB43277 999423 SAMEA8395297 SRR9217487-mag-bin.14 Contig 2021-03-24T08:55:28.890 not provided not provided EMG 13.0x 94.77 0.63 92.11 0.58 GCF_905373695.1 CAJPTZ01 2032 2090 2090 20 1 36 1 Selenomonas_sp_HMT_133_homd_HMT_133 GCA_905373725.1 HMT-557 SRR9217489-mag-bin.1 Named Cultivated Oral (Abundance: Medium) "HMT-557 Peptostreptococcaceae [G9 ""Eubacterium""] brachy SRR9217489-mag-bin.1" 84 1481714 yes 38.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/725/GCA_905373725.1_SRR9217489-mag-bin.1 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Gallibacter;s__Gallibacter brachus PRJEB43277 35517 SAMEA8395298 SRR9217489-mag-bin.1 Contig 2021-03-24T08:55:28.920 not provided not provided EMG 15.0x 95.74 0.71 98.37 0.32 CAJPUF01 1293 1339 1339 17 0 28 1 Gallibacter_brachus_homd_HMT_557 GCA_905373735.1 HMT-113 SRR9217490-mag-bin.7 Unnamed Cultivated Oral (Abundance: Scarce) HMT-113 Peptoniphilaceae [G1] bacterium HMT-113 SRR9217490-mag-bin.7 80 2073107 yes 36.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/735/GCA_905373735.1_SRR9217490-mag-bin.7 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__W5053;s__W5053 sp000467935 PRJEB43277 1321783 SAMEA8395303 SRR9217490-mag-bin.7 Contig 2021-03-24T08:55:29.156 not provided not provided EMG 48.0x 98.43 0 98.56 1.17 CAJPUG01 1989 2038 2038 27 0 21 1 Peptoniphilaceae__G1__bacterium_HMT_113_homd_HMT_113 GCA_905373745.1 HMT-041 SRR9217490-mag-bin.10 Named Cultivated Oral (Abundance: Scarce) HMT-041 Desulfobulbus oralis SRR9217490-mag-bin.10 114 2433601 yes 60.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/745/GCA_905373745.1_SRR9217490-mag-bin.10 d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__Desulfobulbus;s__Desulfobulbus oralis PRJEB43277 1986146 SAMEA8395305 SRR9217490-mag-bin.10 Contig 2021-03-24T08:55:29.220 not provided not provided EMG 23.0x 98.38 98.51 0.6 100 0.61 GCF_905373745.1 CAJPUD01 2124 2180 2180 9 0 46 1 Desulfobulbus_oralis_homd_HMT_041 GCA_905373765.1 HMT-710 SRR9217492-mag-bin.9 Named NVP Cultivated Oral (Abundance: Medium) HMT-710 Schaalia dentiphila SRR9217492-mag-bin.9 84 2323507 yes 65.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/765/GCA_905373765.1_SRR9217492-mag-bin.9 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia dentiphila PRJEB43277 1660 SAMEA8395308 SRR9217492-mag-bin.9 Contig 2021-03-24T08:55:29.326 not provided not provided EMG 49.0x 87.59 98.1 1.54 99.99 2.61 GCF_905373765.1 CAJPUC01 2025 2075 2075 8 0 41 1 Schaalia_dentiphila_homd_HMT_710 GCA_905373805.1 HMT-718 SRR9217492-mag-bin.14 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae SRR9217492-mag-bin.14 30 2030856 yes 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/805/GCA_905373805.1_SRR9217492-mag-bin.14 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJEB43277 729 SAMEA8395311 SRR9217492-mag-bin.14 Contig 2021-03-24T08:55:29.420 not provided not provided EMG 47.0x 95.94 98.98 0 100 0 CAJPUE01 1905 1973 1973 27 1 39 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_905373815.1 HMT-111 SRR9217489-mag-bin.4 Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra SRR9217489-mag-bin.4 176 1561631 yes 28.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/815/GCA_905373815.1_SRR9217489-mag-bin.4 d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJEB43277 33033 SAMEA8395300 SRR9217489-mag-bin.4 Contig 2021-03-24T08:55:28.983 not provided not provided EMG 20.0x 97.41 95.14 0.81 92.68 1.68 GCF_905373815.1 CAJPUJ01 1481 1549 1549 32 0 35 1 Parvimonas_micra_homd_HMT_111 GCA_905373845.1 HMT-852 SRR9217492-mag-bin.11 Named** Cultivated Oral (Abundance: High) HMT-852 Actinomyces massiliensis SRR9217492-mag-bin.11 263 2775398 yes 67.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/845/GCA_905373845.1_SRR9217492-mag-bin.11 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces massiliensis PRJEB43277 461393 SAMEA8395309 SRR9217492-mag-bin.11 Contig 2021-03-24T08:55:29.360 not provided not provided EMG 23.0x 98.11 80.63 0.71 77.81 0.56 GCF_905373845.1 CAJPUQ01 2390 2444 2444 17 0 36 1 Actinomyces_massiliensis_homd_HMT_852 GCA_905373855.1 HMT-576 SRR9217490-mag-bin.1 Named Cultivated Oral (Abundance: Medium) HMT-576 Streptococcus constellatus SRR9217490-mag-bin.1 82 1848707 yes 37.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/855/GCA_905373855.1_SRR9217490-mag-bin.1 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus constellatus PRJEB43277 76860 SAMEA8395301 SRR9217490-mag-bin.1 Contig 2021-03-24T08:55:29.076 not provided not provided EMG 19.0x 97.86 97.52 0 99.89 0.11 GCF_905373855.1 CAJPUH01 1802 1875 1875 35 0 37 1 Streptococcus_constellatus_homd_HMT_576 GCA_905373865.1 HMT-042 SRR9217490-mag-bin.8 Named Cultivated Oral (Abundance: Medium) HMT-042 Mogibacterium timidum SRR9217490-mag-bin.8 21 1564676 yes 45.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/373/865/GCA_905373865.1_SRR9217490-mag-bin.8 d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium;s__Mogibacterium timidum PRJEB43277 35519 SAMEA8395304 SRR9217490-mag-bin.8 Contig 2021-03-24T08:55:29.186 not provided not provided EMG 49.0x 99.09 98.58 0 92.33 0.16 GCF_905373865.1 CAJPUB01 1386 1439 1439 12 1 39 1 Mogibacterium_timidum_homd_HMT_042 GCA_910574905.1 HMT-076 A42_34_SW_DSS Named Cultivated Skin (Abundance: Scarce) HMT-076 Staphylococcus warneri A42_34_SW_DSS 24 2502595 32.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/574/905/GCA_910574905.1_MGBC000139 d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri PRJEB45232 1292 SAMEA8801373 MGBC000139 Contig 2021-06-19T08:10:43.580 United Kingdom Mouse faeces UNIVERSITY OF CAMBRIDGE 143.0x 96.06 99.73 0 100 0.09 GCF_910574905.1 CAJTDT01 2370 2496 2496 53 11 61 1 Staphylococcus_warneri_homd_HMT_076 GCA_910575195.1 HMT-534 A88_80_GA_DSS Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens A88_80_GA_DSS 29 1890628 37.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/575/195/GCA_910575195.1_MGBC000101 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJEB45232 46124 SAMEA8801336 MGBC000101 Contig 2021-06-19T08:10:42.673 United Kingdom Mouse faeces UNIVERSITY OF CAMBRIDGE 227.0x 96.37 99.45 0.18 99.7 0.01 GCF_910575195.1 CAJTDV01 1809 1909 1909 30 9 60 1 Granulicatella_adiacens_homd_HMT_534 GCA_910575295.1 HMT-707 A72_64_SM_DSS Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis A72_64_SM_DSS 10 2054678 41.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/575/295/GCA_910575295.1_MGBC000172 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CP PRJEB45232 1303 SAMEA8801406 MGBC000172 Contig 2021-06-19T08:10:44.376 United Kingdom Mouse faeces UNIVERSITY OF CAMBRIDGE 200.0x 95.06 99.82 0.6 100 0.06 GCF_910575295.1 CAJTEH01 1916 2017 2017 42 6 52 1 Streptococcus_oralis_subsp_oralis_homd_HMT_707 GCA_910575295.1 HMT-707 A72_64_SM_DSS Named Cultivated Oral (Abundance: Medium) HMT-707 Streptococcus oralis subsp. oralis A72_64_SM_DSS 10 2054678 41.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/575/295/GCA_910575295.1_MGBC000172 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis_CP PRJEB45232 1303 SAMEA8801406 MGBC000172 Contig 2021-06-19T08:10:44.376 United Kingdom Mouse faeces UNIVERSITY OF CAMBRIDGE 200.0x 95.06 99.82 0.6 100 0.06 GCF_910575295.1 CAJTEH01 1916 2017 2017 42 6 52 1 Streptococcus_oralis_HMT_071_398_707 GCA_910576065.1 HMT-534 A88 Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens A88 31 1891969 37.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/576/065/GCA_910576065.1_MGBC000234 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJEB45232 46124 SAMEA8801466 MGBC000234 Contig 2021-06-19T08:10:45.880 United Kingdom Mouse faeces UNIVERSITY OF CAMBRIDGE 401.0x 96.36 99.45 0.18 99.7 0.01 GCF_910576065.1 CAJTHJ01 1808 1911 1911 30 12 60 1 Granulicatella_adiacens_homd_HMT_534 GCA_912073625.1 HMT-815 YH Named Cultivated Oral (Abundance: Scarce) HMT-815 Methanobrevibacter oralis YH 14 1953936 27.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/912/073/625/GCA_912073625.1_PRJEB46774 d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanocatella;s__Methanocatella oralis PRJEB46774 66851 SAMEA9459756 PRJEB46774 Contig 2021-08-12T10:01:53.132 IHU - Mediterranee Infection 95.0x 99.64 100 0 99.43 0.3 GCF_912073625.1 CAJVUI01 1877 1913 1913 3 2 31 0 Methanobrevibacter_oralis_homd_HMT_815 GCA_912422195.1 HMT-469 DRR076989_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica DRR076989_bin.1_metaWRAP_v1.1_MAG 165 2982440 yes 40.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/912/422/195/GCA_912422195.1_DRR076989_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB43278 28132 SAMEA9640642 DRR076989_bin.1_metaWRAP_v1.1_ Contig 2021-08-14T10:00:36.582 not provided human saliva metagenome EMG 14.0x 96.48 95.13 0.91 91.22 3.38 CAJVVH01 2597 2642 2642 8 1 35 1 Prevotella_melaninogenica_homd_HMT_469 GCA_913778555.1 HMT-216 SP39_3_metabat2_genome_mining.9 Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-216 Acidovorax temperans SP39_3_metabat2_genome_mining.9 232 3703556 yes 63.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/778/555/GCA_913778555.1_SP39_3_metabat2_genome_mining.9 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax;s__Acidovorax temperans PRJEB45634 158751 SAMEA8944494 SP39_3_metabat2_genome_mining. Contig 2021-09-04T16:18:32.278 China phyllosphere_metagenome_of_Oryza sativa INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY 1.0x 94 1.27 86.77 0.74 GCF_913778555.1 CAJYUT01 3467 3530 3530 28 1 33 1 Acidovorax_temperans_homd_HMT_216 GCA_915063465.1 HMT-693 SRR1045097_bin.7_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens SRR1045097_bin.7_metaWRAP_v1.1_MAG 180 2561906 yes 42.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/063/465/GCA_915063465.1_SRR1045097_bin.7_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJEB26096 28133 SAMEA9921430 SRR1045097_bin.7_metaWRAP_v1.1 Contig 2021-09-25T11:20:53.171 China human oral metagenome EMG 16.0x 98.3 98.05 0.82 99.67 1.81 GCF_915063465.1 CAJZDG01 2159 2198 2198 7 1 31 0 Prevotella_nigrescens_homd_HMT_693 GCA_915063675.1 HMT-122 SRR2037090_bin.21_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis SRR2037090_bin.21_metaWRAP_v1.1_MAG 63 1611607 yes 45.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/063/675/GCA_915063675.1_SRR2037090_bin.21_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJEB26096 187326 SAMEA9921447 SRR2037090_bin.21_metaWRAP_v1. Contig 2021-09-25T11:20:53.503 China human oral metagenome EMG 45.0x 100 0.3 92.05 0.03 CAJZDN01 1533 1600 1600 27 1 38 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_915063695.1 HMT-286 SRR2037090_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-286 Tannerella serpentiformis SRR2037090_bin.3_metaWRAP_v1.1_MAG 282 1941934 yes 58.12 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/063/695/GCA_915063695.1_SRR2037090_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella serpentiformis PRJEB26096 417614 SAMEA9921386 SRR2037090_bin.3_metaWRAP_v1.1 Contig 2021-09-25T11:20:52.319 China human oral metagenome EMG 43.0x 76.11 0 75.71 0.1 CAJZDM01 1535 1568 1568 9 0 23 1 Tannerella_serpentiformis_homd_HMT_286 GCA_915063715.1 HMT-458 SRR1045097_bin.2_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-458 Aggregatibacter sp. HMT-458 SRR1045097_bin.2_metaWRAP_v1.1_MAG 112 1845464 yes 43.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/063/715/GCA_915063715.1_SRR1045097_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter sp000466335 PRJEB26096 470564 SAMEA9921405 SRR1045097_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:20:52.691 China human oral metagenome EMG 15.0x 97.37 0.48 99.73 0.02 GCF_915063715.1 CAJZDK01 1718 1795 1795 42 3 31 1 Aggregatibacter_sp_HMT_458_homd_HMT_458 GCA_915063725.1 HMT-739 SRR1045093_bin.10_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-739 Arachnia propionica SRR1045093_bin.10_metaWRAP_v1.1_MAG 203 3216832 yes 66.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/063/725/GCA_915063725.1_SRR1045093_bin.10_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia propionica PRJEB26096 1750 SAMEA9921425 SRR1045093_bin.10_metaWRAP_v1. Contig 2021-09-25T11:20:53.077 China human oral metagenome EMG 21.0x 98.9 91.93 1.92 94.27 1.6 GCF_915063725.1 CAJZDL01 2945 3015 3015 20 3 46 1 Arachnia_propionica_homd_HMT_739 GCA_915066165.1 HMT-666 SRR1045097_bin.4_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-666 Corynebacterium matruchotii SRR1045097_bin.4_metaWRAP_v1.1_MAG 49 2843031 yes 57.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/066/165/GCA_915066165.1_SRR1045097_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium matruchotii PRJEB26096 571915 SAMEA9921431 SRR1045097_bin.4_metaWRAP_v1.1 Contig 2021-09-25T11:20:53.189 China human oral metagenome EMG 35.0x 83.78 99.23 0.44 100 1.05 CAJZDU01 2569 2627 2627 8 3 46 1 Corynebacterium_matruchotii_homd_HMT_666 GCA_915066195.1 HMT-598 SRR1045097_bin.5_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-598 Neisseria elongata SRR1045097_bin.5_metaWRAP_v1.1_MAG 243 2156470 yes 54.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/066/195/GCA_915066195.1_SRR1045097_bin.5_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata PRJEB26096 495 SAMEA9921421 SRR1045097_bin.5_metaWRAP_v1.1 Contig 2021-09-25T11:20:52.993 China human oral metagenome EMG 19.0x 96.66 92.08 3.89 92.27 2.36 CAJZDX01 2132 2176 2176 11 1 31 1 Neisseria_elongata_homd_HMT_598 GCA_915066855.1 HMT-587 SRR1045099_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa SRR1045099_bin.1_metaWRAP_v1.1_MAG 123 2362988 yes 53.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/066/855/GCA_915066855.1_SRR1045099_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJEB26096 2047 SAMEA9921423 SRR1045099_bin.1_metaWRAP_v1.1 Contig 2021-09-25T11:20:53.038 China human oral metagenome EMG 24.0x 96.71 98.23 0.99 99.96 0.09 CAJZEF01 2052 2110 2110 10 3 44 1 Rothia_dentocariosa_homd_HMT_587 GCA_915066995.1 HMT-329 SRR1045093_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-329 Capnocytophaga leadbetteri SRR1045093_bin.1_metaWRAP_v1.1_MAG 184 2377738 yes 40.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/066/995/GCA_915066995.1_SRR1045093_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga leadbetteri_A PRJEB26096 327575 SAMEA9921439 SRR1045093_bin.1_metaWRAP_v1.1 Contig 2021-09-25T11:20:53.347 China human oral metagenome EMG 16.0x 95.86 95.95 0.4 98.24 0.84 GCF_915066995.1 CAJZEI01 2154 2194 2194 6 0 33 1 Capnocytophaga_leadbetteri_homd_HMT_329 GCA_915068245.1 HMT-130 SRR1045092_bin.4_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-130 Selenomonas noxia SRR1045092_bin.4_metaWRAP_v1.1_MAG 205 1949206 yes 56.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/068/245/GCA_915068245.1_SRR1045092_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda noxia PRJEB26096 135083 SAMEA9921448 SRR1045092_bin.4_metaWRAP_v1.1 Contig 2021-09-25T11:20:53.523 China human oral metagenome EMG 13.0x 98.1 95.29 0.98 93.07 1.09 GCF_915068245.1 CAJZEO01 1913 1970 1970 17 0 39 1 Selenomonas_noxia_homd_HMT_130 GCA_915068305.1 HMT-409 SRR2037090_bin.20_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-409 Lautropia dentalis SRR2037090_bin.20_metaWRAP_v1.1_MAG 224 3475311 yes 65.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/068/305/GCA_915068305.1_SRR2037090_bin.20_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia dentalis PRJEB26096 200449 SAMEA9921434 SRR2037090_bin.20_metaWRAP_v1. Contig 2021-09-25T11:20:53.252 China human oral metagenome EMG 22.0x 94.71 1.05 92.83 0.44 CAJZEP01 2787 2840 2840 9 0 43 1 Lautropia_dentalis_homd_HMT_409 GCA_915069505.1 HMT-619 SRR1044017_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis SRR1044017_bin.1_metaWRAP_v1.1_MAG 284 1747896 yes 49.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/069/505/GCA_915069505.1_SRR1044017_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB26096 837 SAMEA9921413 SRR1044017_bin.1_metaWRAP_v1.1 Contig 2021-09-25T11:20:52.845 China human oral metagenome EMG 11.0x 98.82 85.79 1.02 85.15 0.96 CAJZES01 1521 1555 1555 7 0 26 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_915069595.1 HMT-279 SRR2037088_bin.12_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri SRR2037088_bin.12_metaWRAP_v1.1_MAG 252 2117918 yes 56.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/069/595/GCA_915069595.1_SRR2037088_bin.12_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJEB26096 159274 SAMEA9921442 SRR2037088_bin.12_metaWRAP_v1. Contig 2021-09-25T11:20:53.407 China human oral metagenome EMG 15.0x 96.99 0.47 99.16 0.06 GCF_915069595.1 CAJZFB01 1644 1691 1691 8 2 36 1 Porphyromonas_pasteri_homd_HMT_279 GCA_915070555.1 HMT-180 SRR1045093_bin.11_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-180 Schaalia sp. HMT-180 SRR1045093_bin.11_metaWRAP_v1.1_MAG 171 2294888 yes 66.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/915/070/555/GCA_915070555.1_SRR1045093_bin.11_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000185285 PRJEB26096 1276 SAMEA9921443 SRR1045093_bin.11_metaWRAP_v1. Contig 2021-09-25T11:20:53.429 China human oral metagenome EMG 29.0x 82.3 95.02 0.71 99.22 0.51 CAJZFN01 2001 2066 2066 10 2 52 1 Schaalia_sp_HMT_180_homd_HMT_180 GCA_916048135.1 HMT-714 ERR2764840_bin.6_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens ERR2764840_bin.6_metaWRAP_v1.1_MAG 163 2599276 yes 37.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/135/GCA_916048135.1_ERR2764840_bin.6_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJEB41354 60133 SAMEA9943301 ERR2764840_bin.6_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.229 Germany human oral metagenome EMG 9.0x 98.4 97.83 0.34 95.51 1.09 GCF_916048135.1 CAJZGP01 2074 2112 2112 7 0 30 1 Prevotella_pallens_homd_HMT_714 GCA_916048225.1 HMT-469 ERR2764998_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica ERR2764998_bin.2_metaWRAP_v1.1_MAG 201 2859685 yes 40.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/225/GCA_916048225.1_ERR2764998_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB41354 28132 SAMEA9943391 ERR2764998_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:30:07.000 France human oral metagenome EMG 68.0x 96.8 96.23 0 95.62 0.03 CAJZGV01 2211 2260 2260 10 0 39 0 Prevotella_melaninogenica_homd_HMT_469 GCA_916048245.1 HMT-278 ERR2764965_bin.3_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-278 Porphyromonas sp. HMT-278 ERR2764965_bin.3_metaWRAP_v1.1_MAG 144 2037934 yes 56.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/245/GCA_916048245.1_ERR2764965_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas sp000467855 PRJEB41354 159274 SAMEA9943326 ERR2764965_bin.3_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.754 France human oral metagenome EMG 19.0x 97.93 0.16 99.74 0.1 GCF_916048245.1 CAJZGS01 1610 1655 1655 8 0 36 1 Porphyromonas_sp_HMT_278_homd_HMT_278 GCA_916048315.1 HMT-875 ERR2764810_bin.2_metaWRAP_v1.1_MAG Phylotype Uncultivated Oral (Abundance: Medium) HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 ERR2764810_bin.2_metaWRAP_v1.1_MAG 10 976124 yes 35.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/315/GCA_916048315.1_ERR2764810_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333295 PRJEB41354 77133 SAMEA9943332 ERR2764810_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.867 Germany human oral metagenome EMG 25.0x 72.47 1.12 95.38 2.29 CAJZHD01 1812 1852 1852 3 0 36 1 Absconditicoccaceae__G1__bacterium_HMT_875_homd_HMT_875 GCA_916048315.1 HMT-875 ERR2764810_bin.2_metaWRAP_v1.1_MAG Phylotype Uncultivated Oral (Abundance: Medium) HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 ERR2764810_bin.2_metaWRAP_v1.1_MAG 10 976124 yes 35.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/315/GCA_916048315.1_ERR2764810_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333295 PRJEB41354 77133 SAMEA9943332 ERR2764810_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.867 Germany human oral metagenome EMG 25.0x 72.47 1.12 95.38 2.29 CAJZHD01 1812 1852 1852 3 0 36 1 Absconditicoccaceae__G1_HMT_345_874_875 GCA_916048355.1 HMT-181 ERR2764965_bin.9_metaWRAP_v1.1_MAG Named NVP Cultivated Oral (Abundance: Medium) HMT-181 Schaalia lingnae ERR2764965_bin.9_metaWRAP_v1.1_MAG 135 1741689 yes 55.96 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/355/GCA_916048355.1_ERR2764965_bin.9_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000308055 PRJEB41354 249061 SAMEA9943397 ERR2764965_bin.9_metaWRAP_v1.1 Contig 2021-09-25T11:30:07.114 France human oral metagenome EMG 14.0x 92.54 0.47 86.94 0.4 CAJZHS01 1517 1564 1564 6 1 40 0 Schaalia_lingnae_homd_HMT_181 GCA_916048365.1 HMT-299 ERR2764814_bin.4_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis ERR2764814_bin.4_metaWRAP_v1.1_MAG 103 2448351 yes 38.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/365/GCA_916048365.1_ERR2764814_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJEB41354 425941 SAMEA9943331 ERR2764814_bin.4_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.846 Germany human oral metagenome EMG 10.0x 97.05 96.92 0.86 94.72 1.74 GCF_916048365.1 CAJZHJ01 1927 1957 1957 4 0 25 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_916048385.1 HMT-279 ERR2764975_bin.4_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri ERR2764975_bin.4_metaWRAP_v1.1_MAG 34 2227026 yes 55.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/385/GCA_916048385.1_ERR2764975_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJEB41354 159274 SAMEA9943315 ERR2764975_bin.4_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.555 France human oral metagenome EMG 59.0x 98.87 0 99.86 0.06 GCF_916048385.1 CAJZHH01 1705 1761 1761 8 1 46 1 Porphyromonas_pasteri_homd_HMT_279 GCA_916048505.1 HMT-172 ERR2764996_bin.6_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: High) HMT-172 Schaalia sp. HMT-172 ERR2764996_bin.6_metaWRAP_v1.1_MAG 34 2454307 yes 66.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/505/GCA_916048505.1_ERR2764996_bin.6_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000466265 PRJEB41354 249061 SAMEA9943354 ERR2764996_bin.6_metaWRAP_v1.1 Contig 2021-09-25T11:30:06.282 France human oral metagenome EMG 154.0x 100 0.47 100 0.05 GCF_916048505.1 CAJZHP01 1981 2038 2038 9 0 47 1 Schaalia_sp_HMT_172_homd_HMT_172 GCA_916048645.1 HMT-545 ERR2764820_bin.5_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-545 Aggregatibacter aphrophilus ERR2764820_bin.5_metaWRAP_v1.1_MAG 198 2131817 yes 42.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/645/GCA_916048645.1_ERR2764820_bin.5_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter aphrophilus PRJEB41354 732 SAMEA9943318 ERR2764820_bin.5_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.610 Germany human oral metagenome EMG 8.0x 96.06 91.47 1.55 86.78 0.71 CAJZHV01 1977 2050 2050 52 0 21 0 Aggregatibacter_aphrophilus_homd_HMT_545 GCA_916048815.1 HMT-101 ERR2764996_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava ERR2764996_bin.3_metaWRAP_v1.1_MAG 13 2203954 yes 49.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/048/815/GCA_916048815.1_ERR2764996_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJEB41354 484 SAMEA9943325 ERR2764996_bin.3_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.737 France human oral metagenome EMG 623.0x 94.38 99.92 0 100 0.03 CAJZHX01 2122 2189 2189 18 0 48 1 Neisseria_perflava_homd_HMT_101 GCA_916049685.1 HMT-681 ERR2764924_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR2764924_bin.3_metaWRAP_v1.1_MAG 36 2227283 yes 59.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/685/GCA_916049685.1_ERR2764924_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB41354 316088 SAMEA9943373 ERR2764924_bin.3_metaWRAP_v1.1 Contig 2021-09-25T11:30:06.662 France human oral metagenome EMG 34.0x 99.33 0 99.99 0.35 GCF_916049685.1 CAJZIM01 1742 1804 1804 12 3 46 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_916049685.1 HMT-681 ERR2764924_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR2764924_bin.3_metaWRAP_v1.1_MAG 36 2227283 yes 59.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/685/GCA_916049685.1_ERR2764924_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB41354 316088 SAMEA9943373 ERR2764924_bin.3_metaWRAP_v1.1 Contig 2021-09-25T11:30:06.662 France human oral metagenome EMG 34.0x 99.33 0 99.99 0.35 GCF_916049685.1 CAJZIM01 1742 1804 1804 12 3 46 1 Rothia_mucilaginosa_HMT_147_681 GCA_916049695.1 HMT-476 ERR2764931_bin.5_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava ERR2764931_bin.5_metaWRAP_v1.1_MAG 134 2049743 yes 49.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/695/GCA_916049695.1_ERR2764931_bin.5_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJEB41354 484 SAMEA9943361 ERR2764931_bin.5_metaWRAP_v1.1 Contig 2021-09-25T11:30:06.415 France human oral metagenome EMG 21.0x 93.76 95.97 0.34 98.17 0.2 CAJZIH01 1997 2052 2052 22 0 33 0 Neisseria_subflava_homd_HMT_476 GCA_916049745.1 HMT-681 ERR2764996_bin.5_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR2764996_bin.5_metaWRAP_v1.1_MAG 15 2240937 yes 59.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/745/GCA_916049745.1_ERR2764996_bin.5_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB41354 43675 SAMEA9943320 ERR2764996_bin.5_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.647 France human oral metagenome EMG 323.0x 94.81 99.33 0 100 0.03 GCF_916049745.1 CAJZIR01 1717 1784 1784 13 4 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_916049745.1 HMT-681 ERR2764996_bin.5_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR2764996_bin.5_metaWRAP_v1.1_MAG 15 2240937 yes 59.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/745/GCA_916049745.1_ERR2764996_bin.5_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB41354 43675 SAMEA9943320 ERR2764996_bin.5_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.647 France human oral metagenome EMG 323.0x 94.81 99.33 0 100 0.03 GCF_916049745.1 CAJZIR01 1717 1784 1784 13 4 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_916049875.1 HMT-022 ERR2765003_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-022 Lautropia mirabilis ERR2765003_bin.2_metaWRAP_v1.1_MAG 235 2922232 yes 65.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/875/GCA_916049875.1_ERR2765003_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia mirabilis PRJEB41354 47671 SAMEA9943368 ERR2765003_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:30:06.558 France human oral metagenome EMG 12.0x 96.02 95.11 0.17 95.29 0.9 GCF_916049875.1 CAJZJA01 2444 2490 2490 11 0 34 1 Lautropia_mirabilis_homd_HMT_022 GCA_916049885.1 HMT-710 ERR2764920_bin.2_metaWRAP_v1.1_MAG Named NVP Cultivated Oral (Abundance: Medium) HMT-710 Schaalia dentiphila ERR2764920_bin.2_metaWRAP_v1.1_MAG 88 2356147 yes 65.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/885/GCA_916049885.1_ERR2764920_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia dentiphila PRJEB41354 1660 SAMEA9943314 ERR2764920_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.536 France human oral metagenome EMG 17.0x 87.82 99.29 0.52 99.99 0.19 GCF_916049885.1 CAJZJD01 2030 2079 2079 10 0 38 1 Schaalia_dentiphila_homd_HMT_710 GCA_916049915.1 HMT-240 ERR2764927_bin.2_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: High) HMT-240 Schaalia sp. HMT-240 ERR2764927_bin.2_metaWRAP_v1.1_MAG 243 2128014 yes 65.08 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/915/GCA_916049915.1_ERR2764927_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000278725 PRJEB41354 249061 SAMEA9943340 ERR2764927_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:30:06.018 France human oral metagenome EMG 13.0x 90.96 3.3 90.97 3.68 CAJZJW01 1814 1859 1859 7 0 37 1 Schaalia_sp_HMT_240_homd_HMT_240 GCA_916049965.1 HMT-476 ERR2764907_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava ERR2764907_bin.3_metaWRAP_v1.1_MAG 104 2026603 yes 49.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/965/GCA_916049965.1_ERR2764907_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJEB41354 484 SAMEA9943302 ERR2764907_bin.3_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.249 France human oral metagenome EMG 77.0x 93.52 95.56 0.68 94.02 0.33 CAJZJE01 1955 2014 2014 24 0 35 0 Neisseria_subflava_homd_HMT_476 GCA_916050205.1 HMT-893 ERR2764931_bin.4_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 ERR2764931_bin.4_metaWRAP_v1.1_MAG 50 3069335 yes 68.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/205/GCA_916050205.1_ERR2764931_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJEB41354 544580 SAMEA9943420 ERR2764931_bin.4_metaWRAP_v1.1 Contig 2021-09-25T11:30:07.559 France human oral metagenome EMG 39.0x 96.49 99.73 0.57 100 0.22 GCF_916050205.1 CAJZKH01 2496 2560 2560 14 2 47 1 Actinomyces_oris_clade_893_homd_HMT_893 GCA_916050205.1 HMT-893 ERR2764931_bin.4_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-893 Actinomyces oris clade-893 ERR2764931_bin.4_metaWRAP_v1.1_MAG 50 3069335 yes 68.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/205/GCA_916050205.1_ERR2764931_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces oris PRJEB41354 544580 SAMEA9943420 ERR2764931_bin.4_metaWRAP_v1.1 Contig 2021-09-25T11:30:07.559 France human oral metagenome EMG 39.0x 96.49 99.73 0.57 100 0.22 GCF_916050205.1 CAJZKH01 2496 2560 2560 14 2 47 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_916050265.1 HMT-681 ERR2765224_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR2765224_bin.2_metaWRAP_v1.1_MAG 144 2122041 yes 59.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/265/GCA_916050265.1_ERR2765224_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB41354 43675 SAMEA9943338 ERR2765224_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.981 France human oral metagenome EMG 16.0x 95.19 97.56 0 99.95 0.05 GCF_916050265.1 CAJZKG01 1618 1670 1670 13 0 38 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_916050265.1 HMT-681 ERR2765224_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR2765224_bin.2_metaWRAP_v1.1_MAG 144 2122041 yes 59.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/265/GCA_916050265.1_ERR2765224_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB41354 43675 SAMEA9943338 ERR2765224_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.981 France human oral metagenome EMG 16.0x 95.19 97.56 0 99.95 0.05 GCF_916050265.1 CAJZKG01 1618 1670 1670 13 0 38 1 Rothia_mucilaginosa_HMT_147_681 GCA_916050295.1 HMT-101 ERR2764978_bin.4_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava ERR2764978_bin.4_metaWRAP_v1.1_MAG 185 2169971 yes 49.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/295/GCA_916050295.1_ERR2764978_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava_A PRJEB41354 484 SAMEA9943341 ERR2764978_bin.4_metaWRAP_v1.1 Contig 2021-09-25T11:30:06.036 France human oral metagenome EMG 38.0x 94.53 95.31 0.25 94.7 0.24 CAJZKM01 2095 2145 2145 16 0 33 1 Neisseria_perflava_homd_HMT_101 GCA_916050365.1 HMT-476 ERR2764966_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava ERR2764966_bin.3_metaWRAP_v1.1_MAG 16 2180680 yes 49.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/365/GCA_916050365.1_ERR2764966_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJEB41354 484 SAMEA9943416 ERR2764966_bin.3_metaWRAP_v1.1 Contig 2021-09-25T11:30:07.486 France human oral metagenome EMG 59.0x 93.57 100 0 100 0.01 CAJZKQ01 2061 2122 2122 18 0 42 1 Neisseria_subflava_homd_HMT_476 GCA_916050395.1 HMT-681 ERR2764986_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR2764986_bin.2_metaWRAP_v1.1_MAG 90 2280104 yes 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/395/GCA_916050395.1_ERR2764986_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJEB41354 316088 SAMEA9943342 ERR2764986_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:30:06.057 France human oral metagenome EMG 43.0x 97.33 0 99.99 0.04 GCF_916050395.1 CAJZKS01 1752 1816 1816 12 7 44 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_916050395.1 HMT-681 ERR2764986_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR2764986_bin.2_metaWRAP_v1.1_MAG 90 2280104 yes 59.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/395/GCA_916050395.1_ERR2764986_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJEB41354 316088 SAMEA9943342 ERR2764986_bin.2_metaWRAP_v1.1 Contig 2021-09-25T11:30:06.057 France human oral metagenome EMG 43.0x 97.33 0 99.99 0.04 GCF_916050395.1 CAJZKS01 1752 1816 1816 12 7 44 1 Rothia_mucilaginosa_HMT_147_681 GCA_916050405.1 HMT-469 ERR2764903_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica ERR2764903_bin.3_metaWRAP_v1.1_MAG 192 3056285 yes 40.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/405/GCA_916050405.1_ERR2764903_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB41354 28132 SAMEA9943312 ERR2764903_bin.3_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.494 France human oral metagenome EMG 25.0x 96.83 97.62 0.79 99.78 0.08 CAJZKV01 2386 2431 2431 9 1 34 1 Prevotella_melaninogenica_homd_HMT_469 GCA_916050445.1 HMT-404 ERR2764997_bin.10_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: No Data) HMT-404 Schaalia sp. HMT-404 ERR2764997_bin.10_metaWRAP_v1.1_MAG 134 2203294 yes 64.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/445/GCA_916050445.1_ERR2764997_bin.10_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia bouchesdurhonensis PRJEB41354 1852361 SAMEA9943307 ERR2764997_bin.10_metaWRAP_v1. Contig 2021-09-25T11:30:05.388 France human oral metagenome EMG 37.0x 98.26 94.77 1.26 93.81 0.71 GCF_916050445.1 CAJZKY01 1891 1938 1938 8 0 38 1 Schaalia_sp_HMT_404_homd_HMT_404 GCA_916050455.1 HMT-866 ERR2764871_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii ERR2764871_bin.3_metaWRAP_v1.1_MAG 83 1976895 yes 57.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/455/GCA_916050455.1_ERR2764871_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJEB41354 55565 SAMEA9943388 ERR2764871_bin.3_metaWRAP_v1.1 Contig 2021-09-25T11:30:06.948 France human oral metagenome EMG 19.0x 96.29 0.47 91.69 0.27 CAJZKW01 1612 1667 1667 9 2 42 2 Actinomyces_graevenitzii_homd_HMT_866 GCA_916050515.1 HMT-469 ERR2764838_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica ERR2764838_bin.1_metaWRAP_v1.1_MAG 101 3044475 yes 40.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/050/515/GCA_916050515.1_ERR2764838_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB41354 28132 SAMEA9943334 ERR2764838_bin.1_metaWRAP_v1.1 Contig 2021-09-25T11:30:05.902 Germany human oral metagenome EMG 12.0x 96.86 99.32 0.06 99.99 0.09 CAJZLG01 2405 2453 2453 7 0 40 1 Prevotella_melaninogenica_homd_HMT_469 GCA_916438255.1 HMT-476 DRR214962_bin.5_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava DRR214962_bin.5_metaWRAP_v1.1_MAG 1 2222429 yes 49.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/255/GCA_916438255.1_DRR214962_bin.5_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJDB9452 484 SAMEA10110206 DRR214962_bin.5_metaWRAP_v1.1_ Contig 2021-09-25T10:09:53.698 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 312.0x 93.38 94.56 0.23 85.56 4.08 CAKAEN01 2640 2775 2775 63 12 59 1 Neisseria_subflava_homd_HMT_476 GCA_916438325.1 HMT-934 DRR214959_bin.37_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-934 Oribacterium parvum DRR214959_bin.37_metaWRAP_v1.1_MAG 9 1535942 yes 42.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/325/GCA_916438325.1_DRR214959_bin.37_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium parvum PRJDB9452 1501329 SAMEA10110184 DRR214959_bin.37_metaWRAP_v1.1 Contig 2021-09-25T10:09:53.257 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 198.0x 96.7 58.11 0 63.23 2.19 CAKAGC01 1832 1885 1885 11 11 30 1 Oribacterium_parvum_homd_HMT_934 GCA_916438355.1 HMT-681 DRR214962_bin.15_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 DRR214962_bin.15_metaWRAP_v1.1_MAG 9 2221379 yes 59.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/355/GCA_916438355.1_DRR214962_bin.15_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJDB9452 316088 SAMEA10110177 DRR214962_bin.15_metaWRAP_v1.1 Contig 2021-09-25T10:09:53.117 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 1085.0x 95.5 0 93.98 0.36 CAKAEO01 2036 2104 2104 10 10 47 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_916438355.1 HMT-681 DRR214962_bin.15_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 DRR214962_bin.15_metaWRAP_v1.1_MAG 9 2221379 yes 59.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/355/GCA_916438355.1_DRR214962_bin.15_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJDB9452 316088 SAMEA10110177 DRR214962_bin.15_metaWRAP_v1.1 Contig 2021-09-25T10:09:53.117 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 1085.0x 95.5 0 93.98 0.36 CAKAEO01 2036 2104 2104 10 10 47 1 Rothia_mucilaginosa_HMT_147_681 GCA_916438435.1 HMT-469 DRR214960_bin.12_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica DRR214960_bin.12_metaWRAP_v1.1_MAG 2 3305739 yes 40.6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/435/GCA_916438435.1_DRR214960_bin.12_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJDB9452 28132 SAMEA10110203 DRR214960_bin.12_metaWRAP_v1.1 Contig 2021-09-25T10:09:53.641 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 264.0x 96.65 97.81 0 94.62 0.79 CAKAHD01 3129 3202 3202 9 12 51 1 Prevotella_melaninogenica_homd_HMT_469 GCA_916438585.1 HMT-218 DRR214962_bin.4_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-218 Leptotrichia sp. HMT-218 DRR214962_bin.4_metaWRAP_v1.1_MAG 1 2126997 yes 28.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/585/GCA_916438585.1_DRR214962_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia sp018128225 PRJDB9452 159271 SAMEA10110240 DRR214962_bin.4_metaWRAP_v1.1_ Contig 2021-09-25T10:09:54.375 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 111.0x 84.22 0 86.77 1.43 CAKAFQ01 2320 2433 2433 53 15 44 1 Leptotrichia_sp_HMT_218_homd_HMT_218 GCA_916438675.1 HMT-313 DRR214962_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-313 Prevotella jejuni DRR214962_bin.1_metaWRAP_v1.1_MAG 2 3766836 yes 41.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/675/GCA_916438675.1_DRR214962_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella jejuni PRJDB9452 1177574 SAMEA10110157 DRR214962_bin.1_metaWRAP_v1.1_ Contig 2021-09-25T10:09:52.723 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 901.0x 96.66 97.24 0 99.15 2.18 CAKAFN01 3417 3494 3494 9 15 52 1 Prevotella_jejuni_homd_HMT_313 GCA_916438715.1 HMT-609 DRR214962_bin.25_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-609 Neisseria flava DRR214962_bin.25_metaWRAP_v1.1_MAG 1 2595480 yes 50.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/715/GCA_916438715.1_DRR214962_bin.25_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flava PRJDB9452 237778 SAMEA10110152 DRR214962_bin.25_metaWRAP_v1.1 Contig 2021-09-25T10:09:52.622 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 178.0x 94.57 0.05 86.76 3.05 CAKAFK01 2956 3111 3111 86 12 56 1 Neisseria_flava_homd_HMT_609 GCA_916438985.1 HMT-557 DRR214961_bin.18_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) "HMT-557 Peptostreptococcaceae [G9 ""Eubacterium""] brachy DRR214961_bin.18_metaWRAP_v1.1_MAG" 1 1538677 yes 38.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/985/GCA_916438985.1_DRR214961_bin.18_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Gallibacter;s__Gallibacter brachus PRJDB9452 35517 SAMEA10110198 DRR214961_bin.18_metaWRAP_v1.1 Contig 2021-09-25T10:09:53.547 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 36.0x 85.4 0 88.56 5.15 CAKAGO01 2033 2091 2091 14 6 37 1 Gallibacter_brachus_homd_HMT_557 GCA_916439015.1 HMT-096 DRR214959_bin.28_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-096 Lachnospiraceae [G2] bacterium HMT-096 DRR214959_bin.28_metaWRAP_v1.1_MAG 1 2386140 yes 39.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/439/015/GCA_916439015.1_DRR214959_bin.28_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__F0428;s__F0428 sp003043955 PRJDB9452 1662275 SAMEA10110243 DRR214959_bin.28_metaWRAP_v1.1 Contig 2021-09-25T10:10:13.391 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 150.0x 95.23 0 89.95 4.51 CAKAFZ01 2898 2990 2990 25 15 51 1 Lachnospiraceae__G2__bacterium_HMT_096_homd_HMT_096 GCA_916439075.1 HMT-215 DRR214959_bin.4_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: High) HMT-215 Pseudoleptotrichia sp. HMT-215 DRR214959_bin.4_metaWRAP_v1.1_MAG 2 2502365 yes 31.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/439/075/GCA_916439075.1_DRR214959_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia_A;s__Leptotrichia_A sp000469505 PRJDB9452 159271 SAMEA10110244 DRR214959_bin.4_metaWRAP_v1.1_ Contig 2021-09-25T10:10:13.409 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 57.0x 91.01 1.5 84.64 1.75 CAKAIB01 2875 2953 2953 20 15 42 1 Pseudoleptotrichia_sp_HMT_215_homd_HMT_215 GCA_916439165.1 HMT-279 DRR214962_bin.24_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri DRR214962_bin.24_metaWRAP_v1.1_MAG 5 2298578 yes 55.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/439/165/GCA_916439165.1_DRR214962_bin.24_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJDB9452 159274 SAMEA10110220 DRR214962_bin.24_metaWRAP_v1.1 Contig 2021-09-25T10:09:53.982 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 124.0x 94.21 3.96 88.99 4.15 CAKAHK01 2310 2379 2379 8 13 47 1 Porphyromonas_pasteri_homd_HMT_279 GCA_916439175.1 HMT-240 DRR214962_bin.6_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: High) HMT-240 Schaalia sp. HMT-240 DRR214962_bin.6_metaWRAP_v1.1_MAG 1 2460158 yes 64.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/439/175/GCA_916439175.1_DRR214962_bin.6_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000278725 PRJDB9452 249061 SAMEA10110194 DRR214962_bin.6_metaWRAP_v1.1_ Contig 2021-09-25T10:09:53.465 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 1179.0x 99.29 0.71 99.89 0.57 GCF_916439175.1 CAKAHJ01 2104 2177 2177 8 12 51 2 Schaalia_sp_HMT_240_homd_HMT_240 GCA_916439255.1 HMT-171 DRR214960_bin.22_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-171 Actinomyces oris clade-171 DRR214960_bin.22_metaWRAP_v1.1_MAG 20 2802136 yes 67.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/439/255/GCA_916439255.1_DRR214960_bin.22_metaWRAP_v1.1_MAG Undefined PRJDB9452 249061 SAMEA10110201 DRR214960_bin.22_metaWRAP_v1.1 Contig 2021-09-25T10:09:53.601 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 104.0x CAKAHW01 3032 3101 3101 10 9 49 1 Actinomyces_oris_clade_171_homd_HMT_171 GCA_916439255.1 HMT-171 DRR214960_bin.22_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-171 Actinomyces oris clade-171 DRR214960_bin.22_metaWRAP_v1.1_MAG 20 2802136 yes 67.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/439/255/GCA_916439255.1_DRR214960_bin.22_metaWRAP_v1.1_MAG Undefined PRJDB9452 249061 SAMEA10110201 DRR214960_bin.22_metaWRAP_v1.1 Contig 2021-09-25T10:09:53.601 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 104.0x CAKAHW01 3032 3101 3101 10 9 49 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_916439315.1 HMT-415 DRR214960_bin.36_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-415 Streptococcus rubneri DRR214960_bin.36_metaWRAP_v1.1_MAG 2 2158965 yes 41.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/439/315/GCA_916439315.1_DRR214960_bin.36_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus rubneri PRJDB9452 83427 SAMEA10110223 DRR214960_bin.36_metaWRAP_v1.1 Contig 2021-09-25T10:09:54.037 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 819.0x 93.28 1.19 78.24 4.54 CAKAIN01 2608 2718 2718 37 12 60 1 Streptococcus_rubneri_homd_HMT_415 GCA_916440305.1 HMT-681 DRR214960_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 DRR214960_bin.1_metaWRAP_v1.1_MAG 1 2291235 yes 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/440/305/GCA_916440305.1_DRR214960_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_D PRJDB9452 316088 SAMEA10110183 DRR214960_bin.1_metaWRAP_v1.1_ Contig 2021-09-25T10:09:53.236 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 1837.0x 99.33 0 99.94 0.58 GCF_916440305.1 CAKAIK01 1901 1975 1975 13 10 50 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_916440305.1 HMT-681 DRR214960_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 DRR214960_bin.1_metaWRAP_v1.1_MAG 1 2291235 yes 59.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/440/305/GCA_916440305.1_DRR214960_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa_D PRJDB9452 316088 SAMEA10110183 DRR214960_bin.1_metaWRAP_v1.1_ Contig 2021-09-25T10:09:53.236 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 1837.0x 99.33 0 99.94 0.58 GCF_916440305.1 CAKAIK01 1901 1975 1975 13 10 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_916444975.1 HMT-107 DRR214960_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-107 Lachnoanaerobaculum umeaense DRR214960_bin.3_metaWRAP_v1.1_MAG 1 3017529 yes 35.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/444/975/GCA_916444975.1_DRR214960_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum umeaense PRJDB9452 617123 SAMEA10110202 DRR214960_bin.3_metaWRAP_v1.1_ Contig 2021-09-25T10:09:53.621 not provided human saliva metagenome Antimicrobial Resistance Research Center, National Institute of Infectious Diseases 79.0x 98.34 97.95 0 92.73 4.11 CAKAIS01 3591 3669 3669 16 11 50 1 Lachnoanaerobaculum_umeaense_homd_HMT_107 GCA_916619785.1 HMT-755 Marseille-Q3604 Named Cultivated Oral (Abundance: High) HMT-755 Streptococcus salivarius Marseille-Q3604 5 2221767 39.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/619/785/GCA_916619785.1_PRJEB46726 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sp001556435 PRJEB46726 2866597 SAMEA9544375 PRJEB46726 Contig 2021-10-01T10:20:19.087 Blood culture IHU - Mediterranee Infection 10.0x 99.69 0.15 99.98 0.08 GCF_916619785.1 CAKAKM01 2016 2135 2135 32 18 68 1 Streptococcus_salivarius_homd_HMT_755 GCA_916700545.1 HMT-638 Marseille-Q4154 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 Marseille-Q4154 10 1682274 39.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/700/545/GCA_916700545.1_PRJEB46725 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_I PRJEB46725 2866598 SAMEA9543874 PRJEB46725 Contig 2021-10-01T10:20:19.007 Blood culture IHU - Mediterranee Infection 10.0x 99.66 0.06 100 0.04 GCF_916700545.1 CAKAKN01 1623 1710 1710 35 4 47 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_916700545.1 HMT-638 Marseille-Q4154 Named Cultivated Oral (Abundance: High) HMT-638 Streptococcus infantis clade-638 Marseille-Q4154 10 1682274 39.35 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/700/545/GCA_916700545.1_PRJEB46725 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_I PRJEB46725 2866598 SAMEA9543874 PRJEB46725 Contig 2021-10-01T10:20:19.007 Blood culture IHU - Mediterranee Infection 10.0x 99.66 0.06 100 0.04 GCF_916700545.1 CAKAKN01 1623 1710 1710 35 4 47 1 Streptococcus_infantis_clade_638_homd_HMT_638 GCA_916709915.1 HMT-610 SRR15235657_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens SRR15235657_bin.2_metaWRAP_v1.1_MAG 50 2197236 yes 48.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/709/915/GCA_916709915.1_SRR15235657_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJEB47694 237778 SAMEA10220478 SRR15235657_bin.2_metaWRAP_v1. Contig 2021-10-01T10:19:22.632 not provided human saliva metagenome EMG 207.0x 98.8 0.23 100 0.13 GCF_916709915.1 CAKAOR01 2036 2124 2124 41 0 46 1 Neisseria_flavescens_homd_HMT_610 GCA_916709935.1 HMT-681 SRR15235651_bin.4_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR15235651_bin.4_metaWRAP_v1.1_MAG 93 2379505 yes 59.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/709/935/GCA_916709935.1_SRR15235651_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJEB47694 316088 SAMEA10220469 SRR15235651_bin.4_metaWRAP_v1. Contig 2021-10-01T10:19:22.442 not provided human saliva metagenome EMG 28.0x 98.67 0.67 99.99 0.51 GCF_916709935.1 CAKAOT01 1852 1918 1918 13 6 46 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_916709935.1 HMT-681 SRR15235651_bin.4_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR15235651_bin.4_metaWRAP_v1.1_MAG 93 2379505 yes 59.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/709/935/GCA_916709935.1_SRR15235651_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJEB47694 316088 SAMEA10220469 SRR15235651_bin.4_metaWRAP_v1. Contig 2021-10-01T10:19:22.442 not provided human saliva metagenome EMG 28.0x 98.67 0.67 99.99 0.51 GCF_916709935.1 CAKAOT01 1852 1918 1918 13 6 46 1 Rothia_mucilaginosa_HMT_147_681 GCA_916709955.1 HMT-476 SRR15235667_bin.14_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava SRR15235667_bin.14_metaWRAP_v1.1_MAG 47 2133518 yes 49.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/709/955/GCA_916709955.1_SRR15235667_bin.14_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJEB47694 484 SAMEA10220503 SRR15235667_bin.14_metaWRAP_v1 Contig 2021-10-01T10:19:23.157 not provided human saliva metagenome EMG 157.0x 93.45 98.33 0.05 99.97 0.05 CAKAOU01 1976 2040 2040 17 0 46 1 Neisseria_subflava_homd_HMT_476 GCA_916715705.1 HMT-469 SRR15235652_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica SRR15235652_bin.2_metaWRAP_v1.1_MAG 116 3070081 yes 40.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/715/705/GCA_916715705.1_SRR15235652_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB47694 28132 SAMEA10220457 SRR15235652_bin.2_metaWRAP_v1. Contig 2021-10-01T10:19:22.184 not provided human saliva metagenome EMG 59.0x 95.65 97.97 0 95.43 0.21 CAKAPC01 2406 2462 2462 9 2 44 1 Prevotella_melaninogenica_homd_HMT_469 GCA_916715745.1 HMT-681 SRR15235661_bin.8_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR15235661_bin.8_metaWRAP_v1.1_MAG 28 2288381 yes 59.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/715/745/GCA_916715745.1_SRR15235661_bin.8_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB47694 316088 SAMEA10220437 SRR15235661_bin.8_metaWRAP_v1. Contig 2021-10-01T10:19:21.569 not provided human saliva metagenome EMG 52.0x 99.33 0 100 0.33 GCF_916715745.1 CAKAPF01 1760 1827 1827 12 6 48 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_916715745.1 HMT-681 SRR15235661_bin.8_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR15235661_bin.8_metaWRAP_v1.1_MAG 28 2288381 yes 59.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/715/745/GCA_916715745.1_SRR15235661_bin.8_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB47694 316088 SAMEA10220437 SRR15235661_bin.8_metaWRAP_v1. Contig 2021-10-01T10:19:21.569 not provided human saliva metagenome EMG 52.0x 99.33 0 100 0.33 GCF_916715745.1 CAKAPF01 1760 1827 1827 12 6 48 1 Rothia_mucilaginosa_HMT_147_681 GCA_916715755.1 HMT-122 SRR15235649_bin.18_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis SRR15235649_bin.18_metaWRAP_v1.1_MAG 94 1614537 yes 45.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/715/755/GCA_916715755.1_SRR15235649_bin.18_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJEB47694 187326 SAMEA10220481 SRR15235649_bin.18_metaWRAP_v1 Contig 2021-10-01T10:19:22.688 not provided human saliva metagenome EMG 23.0x 99.1 1.47 88.5 0.07 CAKAPE01 1512 1585 1585 27 0 45 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_916719845.1 HMT-595 SRR15235668_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-595 Corynebacterium durum SRR15235668_bin.2_metaWRAP_v1.1_MAG 238 2478936 yes 57.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/719/845/GCA_916719845.1_SRR15235668_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium durum PRJEB47694 556548 SAMEA10220488 SRR15235668_bin.2_metaWRAP_v1. Contig 2021-10-01T10:19:22.848 not provided human saliva metagenome EMG 12.0x 82.8 93.58 0.9 93.6 0.6 CAKAPK01 2388 2442 2442 14 0 40 0 Corynebacterium_durum_homd_HMT_595 GCA_916719885.1 HMT-221 SRR15235655_bin.6_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-221 Leptotrichia sp. HMT-221 SRR15235655_bin.6_metaWRAP_v1.1_MAG 221 1219079 yes 29.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/719/885/GCA_916719885.1_SRR15235655_bin.6_metaWRAP_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__JABCPH02;s__JABCPH02 sp013333235 PRJEB47694 159271 SAMEA10220491 SRR15235655_bin.6_metaWRAP_v1. Contig 2021-10-01T10:19:22.919 not provided human saliva metagenome EMG 9.0x 66.9 2.36 63.09 1.2 CAKAPN01 1053 1079 1079 7 0 18 1 Leptotrichia_sp_HMT_221_homd_HMT_221 GCA_916719905.1 HMT-582 SRR15235659_bin.10_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-582 Kingella denitrificans SRR15235659_bin.10_metaWRAP_v1.1_MAG 181 1753766 yes 54.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/719/905/GCA_916719905.1_SRR15235659_bin.10_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_A;s__Kingella_A denitrificans PRJEB47694 502 SAMEA10220506 SRR15235659_bin.10_metaWRAP_v1 Contig 2021-10-01T10:19:23.219 not provided human saliva metagenome EMG 35.0x 96.35 90.76 0.68 91.26 0.26 CAKAPP01 1774 1798 1798 5 0 19 0 Kingella_denitrificans_homd_HMT_582 GCA_916719955.1 HMT-299 SRR15235667_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis SRR15235667_bin.3_metaWRAP_v1.1_MAG 55 2335203 yes 38.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/719/955/GCA_916719955.1_SRR15235667_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJEB47694 425941 SAMEA10220450 SRR15235667_bin.3_metaWRAP_v1. Contig 2021-10-01T10:19:22.023 not provided human saliva metagenome EMG 25.0x 96.78 98.7 0.11 99.53 0.02 GCF_916719955.1 CAKAPR01 1811 1849 1849 5 0 32 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_916720025.1 HMT-866 SRR15235656_bin.17_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii SRR15235656_bin.17_metaWRAP_v1.1_MAG 79 1934683 yes 57.89 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/025/GCA_916720025.1_SRR15235656_bin.17_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJEB47694 55565 SAMEA10220476 SRR15235656_bin.17_metaWRAP_v1 Contig 2021-10-01T10:19:22.588 not provided human saliva metagenome EMG 27.0x 96.81 1.42 91.5 0.36 CAKAPV01 1568 1623 1623 9 0 46 0 Actinomyces_graevenitzii_homd_HMT_866 GCA_916720055.1 HMT-875 SRR15235650_bin.7_metaWRAP_v1.1_MAG Phylotype Uncultivated Oral (Abundance: Medium) HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 SRR15235650_bin.7_metaWRAP_v1.1_MAG 113 800111 yes 35.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/055/GCA_916720055.1_SRR15235650_bin.7_metaWRAP_v1.1_MAG d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333295 PRJEB47694 77133 SAMEA10220517 SRR15235650_bin.7_metaWRAP_v1. Contig 2021-10-01T10:19:23.449 not provided human saliva metagenome EMG 9.0x 67.6 1.24 91.2 0.7 CAKAQI01 1441 1478 1478 3 0 33 1 Absconditicoccaceae__G1__bacterium_HMT_875_homd_HMT_875 GCA_916720055.1 HMT-875 SRR15235650_bin.7_metaWRAP_v1.1_MAG Phylotype Uncultivated Oral (Abundance: Medium) HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 SRR15235650_bin.7_metaWRAP_v1.1_MAG 113 800111 yes 35.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/055/GCA_916720055.1_SRR15235650_bin.7_metaWRAP_v1.1_MAG d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333295 PRJEB47694 77133 SAMEA10220517 SRR15235650_bin.7_metaWRAP_v1. Contig 2021-10-01T10:19:23.449 not provided human saliva metagenome EMG 9.0x 67.6 1.24 91.2 0.7 CAKAQI01 1441 1478 1478 3 0 33 1 Absconditicoccaceae__G1_HMT_345_874_875 GCA_916720075.1 HMT-279 SRR15235654_bin.4_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri SRR15235654_bin.4_metaWRAP_v1.1_MAG 70 2234366 yes 55.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/075/GCA_916720075.1_SRR15235654_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJEB47694 159274 SAMEA10220493 SRR15235654_bin.4_metaWRAP_v1. Contig 2021-10-01T10:19:22.959 not provided human saliva metagenome EMG 33.0x 98.87 0 99.37 0.11 GCF_916720075.1 CAKAQC01 1706 1764 1764 7 1 49 1 Porphyromonas_pasteri_homd_HMT_279 GCA_916720085.1 HMT-096 SRR15235658_bin.5_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-096 Lachnospiraceae [G2] bacterium HMT-096 SRR15235658_bin.5_metaWRAP_v1.1_MAG 56 1943189 yes 40.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/085/GCA_916720085.1_SRR15235658_bin.5_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__F0428;s__F0428 sp003043955 PRJEB47694 297314 SAMEA10220511 SRR15235658_bin.5_metaWRAP_v1. Contig 2021-10-01T10:19:23.323 not provided human saliva metagenome EMG 30.0x 95.89 0 96.67 0.1 CAKAQD01 1813 1861 1861 12 0 35 1 Lachnospiraceae__G2__bacterium_HMT_096_homd_HMT_096 GCA_916720105.1 HMT-218 SRR15235650_bin.2_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-218 Leptotrichia sp. HMT-218 SRR15235650_bin.2_metaWRAP_v1.1_MAG 238 1187035 yes 28.82 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/105/GCA_916720105.1_SRR15235650_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia sp018128225 PRJEB47694 159271 SAMEA10220513 SRR15235650_bin.2_metaWRAP_v1. Contig 2021-10-01T10:19:23.360 not provided human saliva metagenome EMG 11.0x 58.61 1.14 63.48 0.16 CAKAQF01 1006 1030 1030 9 0 14 1 Leptotrichia_sp_HMT_218_homd_HMT_218 GCA_916720135.1 HMT-417 SRR15235662_bin.26_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: High) HMT-417 Leptotrichia sp. HMT-417 SRR15235662_bin.26_metaWRAP_v1.1_MAG 189 2378985 yes 29.65 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/135/GCA_916720135.1_SRR15235662_bin.26_metaWRAP_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia wadei_A PRJEB47694 159271 SAMEA10220440 SRR15235662_bin.26_metaWRAP_v1 Contig 2021-10-01T10:19:21.631 not provided human saliva metagenome EMG 19.0x 98.86 1.3 99.07 1.93 GCF_916720135.1 CAKAQG01 2146 2227 2227 26 0 53 2 Leptotrichia_sp_HMT_417_homd_HMT_417 GCA_916720155.1 HMT-170 SRR15235659_bin.27_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: High) HMT-170 Actinomyces sp. HMT-170 SRR15235659_bin.27_metaWRAP_v1.1_MAG 187 2627796 yes 68.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/155/GCA_916720155.1_SRR15235659_bin.27_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp000195595 PRJEB47694 249061 SAMEA10220495 SRR15235659_bin.27_metaWRAP_v1 Contig 2021-10-01T10:19:22.998 not provided human saliva metagenome EMG 68.0x 93.48 1.07 95.81 0.2 GCF_916720155.1 CAKAQJ01 2199 2252 2252 14 0 38 1 Actinomyces_sp_HMT_170_homd_HMT_170 GCA_916720205.1 HMT-714 SRR15235666_bin.18_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens SRR15235666_bin.18_metaWRAP_v1.1_MAG 70 2606342 yes 37.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/205/GCA_916720205.1_SRR15235666_bin.18_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJEB47694 60133 SAMEA10220461 SRR15235666_bin.18_metaWRAP_v1 Contig 2021-10-01T10:19:22.271 not provided human saliva metagenome EMG 47.0x 98.45 98.31 0.34 99.67 0.18 GCF_916720205.1 CAKAQN01 2076 2122 2122 8 0 37 1 Prevotella_pallens_homd_HMT_714 GCA_916720355.1 HMT-306 SRR15235666_bin.10_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-306 Prevotella vespertina SRR15235666_bin.10_metaWRAP_v1.1_MAG 120 2177646 yes 41.55 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/355/GCA_916720355.1_SRR15235666_bin.10_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella vespertina PRJEB47694 159272 SAMEA10220467 SRR15235666_bin.10_metaWRAP_v1 Contig 2021-10-01T10:19:22.399 not provided human saliva metagenome EMG 28.0x 71.55 0 85.66 0.14 CAKAQW01 1753 1794 1794 5 1 35 0 Prevotella_vespertina_homd_HMT_306 GCA_916720365.1 HMT-298 SRR15235659_bin.13_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola SRR15235659_bin.13_metaWRAP_v1.1_MAG 183 2995149 yes 40.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/365/GCA_916720365.1_SRR15235659_bin.13_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJEB47694 470565 SAMEA10220460 SRR15235659_bin.13_metaWRAP_v1 Contig 2021-10-01T10:19:22.249 not provided human saliva metagenome EMG 27.0x 97.95 96.91 0 94.88 0.4 GCF_916720365.1 CAKAQX01 2417 2489 2489 41 0 31 0 Prevotella_histicola_homd_HMT_298 GCA_916720385.1 HMT-448 SRR15235663_bin.9_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-448 Actinomyces sp. HMT-448 SRR15235663_bin.9_metaWRAP_v1.1_MAG 211 2456475 yes 70.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/385/GCA_916720385.1_SRR15235663_bin.9_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp000220835 PRJEB47694 249061 SAMEA10220525 SRR15235663_bin.9_metaWRAP_v1. Contig 2021-10-01T10:19:23.609 not provided human saliva metagenome EMG 19.0x 85.74 0.47 85.02 0.6 CAKAQZ01 2069 2123 2123 13 0 40 1 Actinomyces_sp_HMT_448_homd_HMT_448 GCA_916720395.1 HMT-419 SRR15235662_bin.6_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-419 Stomatobaculum longum SRR15235662_bin.6_metaWRAP_v1.1_MAG 234 1704558 yes 56.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/395/GCA_916720395.1_SRR15235662_bin.6_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Moryella;s__Moryella longum PRJEB47694 796942 SAMEA10220510 SRR15235662_bin.6_metaWRAP_v1. Contig 2021-10-01T10:19:23.299 not provided human saliva metagenome EMG 11.0x 95.92 87.45 0.84 92.5 1.14 CAKARA01 1506 1538 1538 7 0 24 1 Stomatobaculum_longum_homd_HMT_419 GCA_916720415.1 HMT-467 SRR15235662_bin.10_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci SRR15235662_bin.10_metaWRAP_v1.1_MAG" 124 1634611 yes 40.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/415/GCA_916720415.1_SRR15235662_bin.10_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJEB47694 143393 SAMEA10220443 SRR15235662_bin.10_metaWRAP_v1 Contig 2021-10-01T10:19:21.695 not provided human saliva metagenome EMG 13.0x 94.44 1.06 94.31 1.02 CAKARB01 1466 1511 1511 24 0 20 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_916720475.1 HMT-413 SRR15235657_bin.10_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-413 Alloprevotella sp. HMT-413 SRR15235657_bin.10_metaWRAP_v1.1_MAG 95 2737121 yes 47.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/475/GCA_916720475.1_SRR15235657_bin.10_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella massiliensis PRJEB47694 370804 SAMEA10220485 SRR15235657_bin.10_metaWRAP_v1 Contig 2021-10-01T10:19:22.779 not provided human saliva metagenome EMG 22.0x 96.19 1.28 97.26 2.66 CAKARG01 2173 2215 2215 6 0 35 1 Alloprevotella_sp_HMT_413_homd_HMT_413 GCA_916720605.1 HMT-587 SRR15235668_bin.10_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa SRR15235668_bin.10_metaWRAP_v1.1_MAG 194 2293427 yes 53.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/605/GCA_916720605.1_SRR15235668_bin.10_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJEB47694 2047 SAMEA10220526 SRR15235668_bin.10_metaWRAP_v1 Contig 2021-10-01T10:19:23.631 not provided human saliva metagenome EMG 15.0x 96.36 89.06 0.66 92.18 0.72 GCF_916720605.1 CAKARO01 1983 2022 2022 9 1 28 1 Rothia_dentocariosa_homd_HMT_587 GCA_916720615.1 HMT-757 SRR15235652_bin.5_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-757 Gemella sanguinis SRR15235652_bin.5_metaWRAP_v1.1_MAG 113 1736345 yes 29.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/615/GCA_916720615.1_SRR15235652_bin.5_metaWRAP_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella sanguinis PRJEB47694 84135 SAMEA10220520 SRR15235652_bin.5_metaWRAP_v1. Contig 2021-10-01T10:19:23.514 not provided human saliva metagenome EMG 14.0x 95.76 90.53 1.72 90.36 2.46 GCF_916720615.1 CAKARP01 1576 1622 1622 26 2 18 0 Gemella_sanguinis_homd_HMT_757 GCA_916720625.1 HMT-873 SRR15235657_bin.8_metaWRAP_v1.1_MAG Phylotype Uncultivated Oral (Abundance: Scarce) HMT-873 Patescibacteria [C1 O1 F1 G2] bacterium HMT-873 SRR15235657_bin.8_metaWRAP_v1.1_MAG 39 911464 yes 36.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/625/GCA_916720625.1_SRR15235657_bin.8_metaWRAP_v1.1_MAG d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__BD1-5;f__UBA2023;g__GN02-873;s__GN02-873 sp003260345 PRJEB47694 363504 SAMEA10220448 SRR15235657_bin.8_metaWRAP_v1. Contig 2021-10-01T10:19:21.986 not provided human saliva metagenome EMG 12.0x 82.76 1.72 92.31 0.33 CAKARQ01 1197 1235 1235 1 0 37 0 Patescibacteria__C1_O1_F1_G2__bacterium_HMT_873_homd_HMT_873 GCA_916720675.1 HMT-307 SRR15235658_bin.10_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-307 Segatella salivae SRR15235658_bin.10_metaWRAP_v1.1_MAG 245 2474248 yes 41.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/675/GCA_916720675.1_SRR15235658_bin.10_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella salivae PRJEB47694 228604 SAMEA10220504 SRR15235658_bin.10_metaWRAP_v1 Contig 2021-10-01T10:19:23.176 not provided human saliva metagenome EMG 17.0x 97.85 95.02 0.17 92.66 0.02 CAKARV01 1929 1961 1961 9 0 23 0 Segatella_salivae_homd_HMT_307 GCA_916720735.1 HMT-429 SRR15235655_bin.4_metaWRAP_v1.1_MAG Named NVP Cultivated Oral (Abundance: High) HMT-429 Fusobacterium pseudoperiodonticum SRR15235655_bin.4_metaWRAP_v1.1_MAG 251 2136019 yes 27.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/735/GCA_916720735.1_SRR15235655_bin.4_metaWRAP_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium pseudoperiodonticum PRJEB47694 860 SAMEA10220474 SRR15235655_bin.4_metaWRAP_v1. Contig 2021-10-01T10:19:22.549 not provided human saliva metagenome EMG 14.0x 93.13 96.07 1.69 90.36 0.34 CAKARW01 2017 2056 2056 20 0 18 1 Fusobacterium_pseudoperiodonticum_homd_HMT_429 GCA_916720955.1 HMT-681 SRR15235657_bin.11_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR15235657_bin.11_metaWRAP_v1.1_MAG 29 2285419 yes 59.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/955/GCA_916720955.1_SRR15235657_bin.11_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp916720455 PRJEB47694 43675 SAMEA10220501 SRR15235657_bin.11_metaWRAP_v1 Contig 2021-10-01T10:19:23.113 not provided human saliva metagenome EMG 84.0x 93.17 99.11 0.94 100 1.29 GCF_916720955.1 CAKASA01 1737 1804 1804 13 4 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_916720955.1 HMT-681 SRR15235657_bin.11_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR15235657_bin.11_metaWRAP_v1.1_MAG 29 2285419 yes 59.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/955/GCA_916720955.1_SRR15235657_bin.11_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp916720455 PRJEB47694 43675 SAMEA10220501 SRR15235657_bin.11_metaWRAP_v1 Contig 2021-10-01T10:19:23.113 not provided human saliva metagenome EMG 84.0x 93.17 99.11 0.94 100 1.29 GCF_916720955.1 CAKASA01 1737 1804 1804 13 4 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_916720985.1 HMT-188 SRR15235667_bin.24_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria SRR15235667_bin.24_metaWRAP_v1.1_MAG 125 2591757 yes 56.92 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/720/985/GCA_916720985.1_SRR15235667_bin.24_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJEB47694 172042 SAMEA10220515 SRR15235667_bin.24_metaWRAP_v1 Contig 2021-10-01T10:19:23.405 not provided human saliva metagenome EMG 15.0x 97.32 93.21 0 94.31 0.06 GCF_916720985.1 CAKASD01 2279 2320 2320 12 2 26 1 Rothia_aeria_homd_HMT_188 GCA_916856725.1 HMT-035 Marseille-Q0026 Named Cultivated Oral (Abundance: High) HMT-035 Haemophilus paraphrohaemolyticus Marseille-Q0026 15 1996587 40.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/856/725/GCA_916856725.1_PRJEB46705 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A paraphrohaemolyticus PRJEB46705 2866580 SAMEA9985269 PRJEB46705 Contig 2021-10-06T16:38:32.466 urine IHU - Mediterranee Infection 10.0x 99.66 0 100 0.04 GCF_916856725.1 CAKASJ01 1896 1985 1985 23 10 55 1 Haemophilus_paraphrohaemolyticus_homd_HMT_035 GCA_916862695.1 HMT-036 Marseille-P9675 Unnamed Cultivated Oral (Abundance: High) HMT-036 Haemophilus sp. HMT-036 Marseille-P9675 19 1927163 38.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/862/695/GCA_916862695.1_PRJEB46706 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus haemolyticus_K PRJEB46706 2866579 SAMEA9985268 PRJEB46706 Contig 2021-10-06T16:38:32.436 sputum IHU - Mediterranee Infection 10.0x 99.49 0.38 100 0.05 GCF_916862695.1 CAKASP01 1811 1909 1909 33 10 54 1 Haemophilus_sp_HMT_036_homd_HMT_036 GCA_918258265.1 HMT-968 VPIC145 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-968 Bacteroides ovatus VPIC145 1 7082243 41.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/918/258/265/GCA_918258265.1_BOVAC1 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus PRJEB40461 28116 SAMEA9996592 BOVAC1 Complete Genome 2022-06-18T09:33:12.156 WASHINGTON UNIVERSITY IN ST. LOUIS 21.0x 97.56 99.46 0.32 99.99 1.82 GCF_918258265.1 5435 5566 5566 28 15 87 1 Bacteroides_ovatus_homd_HMT_968 GCA_918292745.1 HMT-968 VPI435 Named Cultivated Gastrointestinal Tract (Abundance: High) HMT-968 Bacteroides ovatus VPI435 2 6262417 41.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/918/292/745/GCA_918292745.1_BOVA435 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides sp900755095 PRJEB40461 28116 SAMEA9996597 BOVA435 Contig 2022-06-18T09:33:12.340 WASHINGTON UNIVERSITY IN ST. LOUIS 25.0x 97.46 99.46 0 99.96 0.28 GCF_918292745.1 CAKJZK01 4678 4782 4782 17 15 71 1 Bacteroides_ovatus_homd_HMT_968 GCA_919946725.1 HMT-641 KR271 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae KR271 1 1805497 38.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/919/946/725/GCA_919946725.1_KRLund_NTHi_Assembly_Genome271 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae PRJEB48813 727 SAMEA10987108 KRLund_NTHi_Assembly_Genome271 Complete Genome 2021-12-02T08:22:43.890 Sweden blood LUND UNIVERSITY 328.0x 98.7 99.66 0 100 0 GCF_919946725.1 1686 1797 1797 33 19 58 1 Haemophilus_influenzae_homd_HMT_641 GCA_919949215.1 HMT-641 3655 Named Cultivated Oral (Abundance: Scarce) HMT-641 Haemophilus influenzae 3655 1 1917048 38.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/919/949/215/GCA_919949215.1_KRLund_NTHi_Assembly_Genome3655 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae_H PRJEB48794 727 SAMEA10982446 KRLund_NTHi_Assembly_Genome365 Complete Genome 2021-12-02T08:22:43.860 USA middle ear LUND UNIVERSITY 259.0x 97.07 99.67 0 100 0.03 GCF_919949215.1 1828 1941 1941 35 20 57 1 Haemophilus_influenzae_homd_HMT_641 GCA_920939465.1 HMT-762 Marseille-P9115 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis Marseille-P9115 1 2071265 42.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/920/939/465/GCA_920939465.1_PRJEB46694 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_B PRJEB46694 2866570 SAMEA9985270 PRJEB46694 Complete Genome 2021-10-06T16:38:32.483 sputum IHU - Mediterranee Infection 10.0x 99.89 0.23 99.99 0.03 GCF_920939465.1 1926 2188 2188 184 19 58 1 Aggregatibacter_segnis_homd_HMT_762 GCA_925282535.1 HMT-803 IM1314 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-803 Enterococcus italicus IM1314 159 2375692 39.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/925/282/535/GCA_925282535.1_IM1314 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G;s__Enterococcus_G italicus PRJEB49530 246144 SAMEA11998746 IM1314 Contig 2022-06-11T17:37:52.760 Serbia university of ljubljana, biotechnical faculty 193.0x 98.9 99.01 0.02 100 0.12 GCF_925282535.1 CAKMAW01 2339 2454 2454 44 8 62 1 Enterococcus_italicus_homd_HMT_803 GCA_925293305.1 HMT-803 IM1319 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-803 Enterococcus italicus IM1319 159 2464751 39.18 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/925/293/305/GCA_925293305.1_IM1319 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G;s__Enterococcus_G italicus PRJEB49530 246144 SAMEA11998745 IM1319 Contig 2022-06-11T17:37:52.703 Serbia university of ljubljana, biotechnical faculty 177.0x 98.83 98.84 0 99.98 0.17 GCF_925293305.1 CAKMBW01 2416 2529 2529 45 10 57 1 Enterococcus_italicus_homd_HMT_803 GCA_927910845.1 HMT-298 ERR3827227_bin.8_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola ERR3827227_bin.8_metaWRAP_v1.1_MAG 210 2840808 yes 40.91 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/910/845/GCA_927910845.1_ERR3827227_bin.8_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJEB49987 470565 SAMEA12514505 ERR3827227_bin.8_metaWRAP_v1.1 Contig 2022-01-22T08:16:59.280 not provided human oral metagenome EMG 18.0x 97.82 93.81 0.18 87.41 0.72 CAKMOA01 2512 2560 2560 9 0 38 1 Prevotella_histicola_homd_HMT_298 GCA_927910925.1 HMT-279 ERR3827219_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri ERR3827219_bin.1_metaWRAP_v1.1_MAG 113 2144908 yes 55.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/910/925/GCA_927910925.1_ERR3827219_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJEB49987 159274 SAMEA12514420 ERR3827219_bin.1_metaWRAP_v1.1 Contig 2022-01-22T08:16:57.233 not provided human oral metagenome EMG 14.0x 95.9 0 91.34 0.71 CAKMOK01 1822 1873 1873 8 3 39 1 Porphyromonas_pasteri_homd_HMT_279 GCA_927911275.1 HMT-194 ERR3827247_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-194 Arachnia rubra ERR3827247_bin.3_metaWRAP_v1.1_MAG 139 3140115 yes 64.46 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/275/GCA_927911275.1_ERR3827247_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia rubra PRJEB49987 257457 SAMEA12514443 ERR3827247_bin.3_metaWRAP_v1.1 Contig 2022-01-22T08:17:03.376 not provided human oral metagenome EMG 16.0x 91.4 1.22 94.45 3.29 CAKMPF01 3173 3250 3250 19 3 53 2 Arachnia_rubra_homd_HMT_194 GCA_927911295.1 HMT-101 ERR3827195_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava ERR3827195_bin.2_metaWRAP_v1.1_MAG 115 2246445 yes 49.23 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/295/GCA_927911295.1_ERR3827195_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJEB49987 237778 SAMEA12514454 ERR3827195_bin.2_metaWRAP_v1.1 Contig 2022-01-22T08:16:57.890 not provided human oral metagenome EMG 33.0x 96.87 0.56 96.44 4.15 CAKMPB01 2474 2539 2539 17 2 45 1 Neisseria_perflava_homd_HMT_101 GCA_927911435.1 HMT-866 ERR3827227_bin.6_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii ERR3827227_bin.6_metaWRAP_v1.1_MAG 108 2126736 yes 57.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/435/GCA_927911435.1_ERR3827227_bin.6_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJEB49987 55565 SAMEA12514463 ERR3827227_bin.6_metaWRAP_v1.1 Contig 2022-01-22T08:17:03.533 not provided human oral metagenome EMG 34.0x 98.58 1.16 97.96 0.43 CAKMPM01 2022 2087 2087 10 5 49 1 Actinomyces_graevenitzii_homd_HMT_866 GCA_927911585.1 HMT-681 ERR3827235_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR3827235_bin.1_metaWRAP_v1.1_MAG 141 2128110 yes 59.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/585/GCA_927911585.1_ERR3827235_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB49987 43675 SAMEA12514449 ERR3827235_bin.1_metaWRAP_v1.1 Contig 2022-01-22T08:16:57.780 not provided human oral metagenome EMG 11.0x 96 90.5 0 89.28 2.52 CAKMPV01 1911 1974 1974 13 5 45 0 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_927911585.1 HMT-681 ERR3827235_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR3827235_bin.1_metaWRAP_v1.1_MAG 141 2128110 yes 59.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/585/GCA_927911585.1_ERR3827235_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB49987 43675 SAMEA12514449 ERR3827235_bin.1_metaWRAP_v1.1 Contig 2022-01-22T08:16:57.780 not provided human oral metagenome EMG 11.0x 96 90.5 0 89.28 2.52 CAKMPV01 1911 1974 1974 13 5 45 0 Rothia_mucilaginosa_HMT_147_681 GCA_927911655.1 HMT-683 ERR3827212_bin.2_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-683 Simonsiella muelleri ERR3827212_bin.2_metaWRAP_v1.1_MAG 176 2030979 yes 41.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/655/GCA_927911655.1_ERR3827212_bin.2_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Simonsiella;s__Simonsiella muelleri PRJEB49987 72 SAMEA12514455 ERR3827212_bin.2_metaWRAP_v1.1 Contig 2022-01-22T08:17:03.500 not provided human oral metagenome EMG 18.0x 97.76 90.25 0.72 80.18 2.64 CAKMQI01 2348 2403 2403 14 3 37 1 Simonsiella_muelleri_homd_HMT_683 GCA_927911685.1 HMT-183 ERR3827207_bin.1_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-183 Peptidiphaga sp. HMT-183 ERR3827207_bin.1_metaWRAP_v1.1_MAG 159 2232486 yes 67.75 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/685/GCA_927911685.1_ERR3827207_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Peptidiphaga;s__Peptidiphaga sp000466165 PRJEB49987 249061 SAMEA12514431 ERR3827207_bin.1_metaWRAP_v1.1 Contig 2022-01-22T08:16:57.436 not provided human oral metagenome EMG 33.0x 92.92 0.54 86.56 2.86 CAKMQE01 2149 2207 2207 5 1 51 1 Peptidiphaga_sp_HMT_183_homd_HMT_183 GCA_927911715.1 HMT-469 ERR3827259_bin.3_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica ERR3827259_bin.3_metaWRAP_v1.1_MAG 243 3139129 yes 40.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/715/GCA_927911715.1_ERR3827259_bin.3_metaWRAP_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB49987 28132 SAMEA12514461 ERR3827259_bin.3_metaWRAP_v1.1 Contig 2022-01-22T08:16:58.030 not provided human oral metagenome EMG 29.0x 96.7 97.27 0.66 90.58 3.02 CAKMQR01 2742 2802 2802 9 3 47 1 Prevotella_melaninogenica_homd_HMT_469 GCA_927911755.1 HMT-681 ERR3827324_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR3827324_bin.1_metaWRAP_v1.1_MAG 175 2034439 yes 59.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/755/GCA_927911755.1_ERR3827324_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJEB49987 43675 SAMEA12514492 ERR3827324_bin.1_metaWRAP_v1.1 Contig 2022-01-22T08:16:58.830 not provided human oral metagenome EMG 12.0x 94.58 87.44 1.33 86.48 1.93 CAKMQQ01 1877 1946 1946 12 4 51 2 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_927911755.1 HMT-681 ERR3827324_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 ERR3827324_bin.1_metaWRAP_v1.1_MAG 175 2034439 yes 59.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/755/GCA_927911755.1_ERR3827324_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJEB49987 43675 SAMEA12514492 ERR3827324_bin.1_metaWRAP_v1.1 Contig 2022-01-22T08:16:58.830 not provided human oral metagenome EMG 12.0x 94.58 87.44 1.33 86.48 1.93 CAKMQQ01 1877 1946 1946 12 4 51 2 Rothia_mucilaginosa_HMT_147_681 GCA_927911785.1 HMT-458 ERR3827215_bin.1_metaWRAP_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-458 Aggregatibacter sp. HMT-458 ERR3827215_bin.1_metaWRAP_v1.1_MAG 170 1924108 yes 42.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/785/GCA_927911785.1_ERR3827215_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter sp000466335 PRJEB49987 470564 SAMEA12514470 ERR3827215_bin.1_metaWRAP_v1.1 Contig 2022-01-22T08:16:58.266 not provided human oral metagenome EMG 23.0x 93.76 2.22 83.32 5.8 CAKMQP01 2273 2350 2350 30 6 40 1 Aggregatibacter_sp_HMT_458_homd_HMT_458 GCA_927911805.1 HMT-666 ERR3827335_bin.1_metaWRAP_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-666 Corynebacterium matruchotii ERR3827335_bin.1_metaWRAP_v1.1_MAG 140 2802994 yes 57.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/805/GCA_927911805.1_ERR3827335_bin.1_metaWRAP_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium matruchotii PRJEB49987 571915 SAMEA12514502 ERR3827335_bin.1_metaWRAP_v1.1 Contig 2022-01-22T08:16:59.203 not provided human oral metagenome EMG 13.0x 82.93 91.94 0 86.47 1.15 CAKMQU01 3018 3068 3068 8 2 40 0 Corynebacterium_matruchotii_homd_HMT_666 GCA_934101525.1 HMT-690 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_M_10_2632.105 Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_M_10_2632.105 111 1834769 yes 35.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/101/525/GCA_934101525.1_ERR7746219_bin.105 d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJEB49206 159267 SAMEA13478508 ERR7746219_bin.105 Contig 2022-04-02T09:52:06.240 Tanzania human feces stanford university school of medicine 8.0x 100 0 99.7 0.58 GCF_934101525.1 CAKORO01 1675 1729 1729 17 1 35 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_934149205.1 HMT-556 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_B_9_1942.10 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-556 Prevotella bivia REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_B_9_1942.10 64 1981710 yes 39.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/149/205/GCA_934149205.1_ERR7738550_bin.10 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella bivia PRJEB49206 159272 SAMEA13484353 ERR7738550_bin.10 Contig 2022-04-02T09:56:06.080 Tanzania human feces stanford university school of medicine 46.0x 92.23 0 86.93 0.02 GCF_934149205.1 CAKPED01 1701 1755 1755 9 0 44 1 Prevotella_bivia_homd_HMT_556 GCA_934190595.1 HMT-887 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_K_24_1920.232 Named Cultivated Oral (Abundance: Scarce) HMT-887 Veillonella denticariosi REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_K_24_1920.232 84 1663478 yes 43.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/190/595/GCA_934190595.1_ERR7746688_bin.232 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella denticariosi PRJEB49206 159268 SAMEA13487177 ERR7746688_bin.232 Contig 2022-04-02T09:58:05.813 Tanzania human feces stanford university school of medicine 12.0x 89.81 0 86.62 0.35 CAKPTE01 1476 1514 1514 18 0 20 0 Veillonella_denticariosi_homd_HMT_887 GCA_934190745.1 HMT-709 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_I_2_2614.21 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-709 Limosilactobacillus oris REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_I_2_2614.21 24 1834222 yes 50.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/190/745/GCA_934190745.1_ERR7745722_bin.21 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus oris_A PRJEB49206 2837629 SAMEA13509236 ERR7745722_bin.21 Contig 2022-04-02T10:16:59.716 Tanzania human feces stanford university school of medicine 43.0x 99.45 0 99.16 0.23 GCF_934190745.1 CAKPTH01 1773 1837 1837 24 0 39 1 Limosilactobacillus_oris_homd_HMT_709 GCA_934190915.1 HMT-122 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_I_2_2614.25 Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_I_2_2614.25 12 1670054 yes 45.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/190/915/GCA_934190915.1_ERR7745722_bin.25 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJEB49206 413898 SAMEA13503657 ERR7745722_bin.25 Contig 2022-04-02T10:11:41.713 Tanzania human feces stanford university school of medicine 128.0x 95.21 0 85.84 0.09 CAKPTD01 1595 1675 1675 30 0 49 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_934191025.1 HMT-161 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_I_2_2614.24 Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_I_2_2614.24 7 1997997 yes 38.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/191/025/GCA_934191025.1_ERR7745722_bin.24 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_A PRJEB49206 159268 SAMEA13500886 ERR7745722_bin.24 Contig 2022-04-02T10:09:09.570 Tanzania human feces stanford university school of medicine 264.0x 100 0 99.98 0.26 GCF_934191025.1 CAKPTT01 1797 1863 1863 21 0 44 1 Veillonella_parvula_homd_HMT_161 GCA_934201715.1 HMT-948 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_C_10_1834.5 Named Cultivated Oral (Abundance: Scarce) HMT-948 Streptococcus lactarius REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_C_10_1834.5 23 2031851 yes 41.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/201/715/GCA_934201715.1_ERR7746185_bin.5 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus lactarius PRJEB49206 83427 SAMEA13500984 ERR7746185_bin.5 Contig 2022-04-02T10:09:15.150 Tanzania human feces stanford university school of medicine 60.0x 98.81 1.1 99.89 0.06 GCF_934201715.1 CAKPWY01 1918 1997 1997 50 0 28 1 Streptococcus_lactarius_homd_HMT_948 GCA_934201805.1 HMT-161 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_A_16_1650. Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_A_16_1650.189 249 1958592 yes 38.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/201/805/GCA_934201805.1_ERR7746321_bin.189 d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_I PRJEB49206 159268 SAMEA13503629 ERR7746321_bin.189 Contig 2022-04-02T10:11:40.306 Tanzania human feces stanford university school of medicine 14.0x 89.95 0.12 90.37 1.83 GCF_934201805.1 CAKPXJ01 1709 1762 1762 17 0 36 0 Veillonella_parvula_homd_HMT_161 GCA_934216645.1 HMT-476 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_E_4_1847.6 Named Cultivated Oral (Abundance: High) HMT-476 Neisseria subflava REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_E_4_1847.6 145 2051616 yes 49.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/216/645/GCA_934216645.1_ERR7745888_bin.6 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria sp000186165 PRJEB49206 237778 SAMEA13503819 ERR7745888_bin.6 Contig 2022-04-02T10:11:50.260 Tanzania human feces stanford university school of medicine 9.0x 96.44 1.17 99.77 0.08 GCF_934216645.1 CAKQCG01 1965 2023 2023 19 0 38 1 Neisseria_subflava_homd_HMT_476 GCA_934216815.1 HMT-610 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_H_9_THA1076 Named Cultivated Oral (Abundance: High) HMT-610 Neisseria flavescens REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_H_9_THA1076JZ.111 28 2148174 yes 49.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/216/815/GCA_934216815.1_ERR7738560_bin.111 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flavescens_B PRJEB49206 237778 SAMEA13501076 ERR7738560_bin.111 Contig 2022-04-02T10:09:19.666 Nepal human feces stanford university school of medicine 14.0x 99.92 2.48 100 0.67 GCF_934216815.1 CAKQCM01 2006 2090 2090 39 0 44 1 Neisseria_flavescens_homd_HMT_610 GCA_934232835.1 HMT-803 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-A-D_F_10_1632.57 Named Cultivated Environmental -Food (Abundance: Scarce) HMT-803 Enterococcus italicus REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-A-D_F_10_1632.57 58 2133694 yes 39.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/232/835/GCA_934232835.1_ERR7745429_bin.57 d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G;s__Enterococcus_G italicus PRJEB49206 167972 SAMEA13487261 ERR7745429_bin.57 Contig 2022-04-02T09:58:09.280 Tanzania human feces stanford university school of medicine 19.0x 97.02 0 99.97 0 GCF_934232835.1 CAKQGB01 2126 2188 2188 40 1 20 1 Enterococcus_italicus_homd_HMT_803 GCA_934233785.1 HMT-684 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_D_17_CHE100 Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-684 Mitsuokella multacida REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_D_17_CHE1007SZ.92 16 2376554 yes 58.56 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/233/785/GCA_934233785.1_ERR7738580_bin.92 d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;s__Mitsuokella multacida PRJEB49206 453120 SAMEA13473459 ERR7738580_bin.92 Contig 2022-04-02T09:49:00.220 Nepal human feces stanford university school of medicine 24.0x 97.74 0 100 0.03 GCF_934233785.1 CAKQGP01 2150 2240 2240 24 0 65 1 Mitsuokella_multacida_homd_HMT_684 GCA_934234175.1 HMT-513 REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber_C_5_1018.152 Unnamed Cultivated Oral (Abundance: Low) HMT-513 Aggregatibacter sp. HMT-513 REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber_C_5_1018.152 14 1754698 yes 42.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/234/175/GCA_934234175.1_ERR7738276_bin.152 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_A PRJEB49206 470564 SAMEA13473755 ERR7738276_bin.152 Contig 2022-04-02T09:49:10.426 USA human feces stanford university school of medicine 44.0x 88.86 0 87.88 0.03 CAKQGW01 1679 1747 1747 26 0 41 1 Aggregatibacter_sp_HMT_513_homd_HMT_513 GCA_934255625.1 HMT-762 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_G_3_1732.107 Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_G_3_1732.107 33 1877499 yes 42.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/255/625/GCA_934255625.1_ERR7738532_bin.107 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_B PRJEB49206 470564 SAMEA13520379 ERR7738532_bin.107 Contig 2022-04-02T10:28:21.680 Tanzania human feces stanford university school of medicine 20.0x 95.45 0.23 99.43 0.02 GCF_934255625.1 CAKQOR01 1748 1888 1888 94 1 44 1 Aggregatibacter_segnis_homd_HMT_762 GCA_934271155.1 HMT-718 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_A_2_1814.24 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_A_2_1814.24 20 1862073 yes 39.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/271/155/GCA_934271155.1_ERR7745828_bin.24 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_K PRJEB49206 237779 SAMEA13520380 ERR7745828_bin.24 Contig 2022-04-02T10:28:21.743 Tanzania human feces stanford university school of medicine 13.0x 99.89 0.34 100 0 GCF_934271155.1 CAKQRA01 1763 1830 1830 22 2 42 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_934274085.1 HMT-718 REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber_C_5_1018.183 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber_C_5_1018.183 18 2064084 yes 39.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/274/085/GCA_934274085.1_ERR7738276_bin.183 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJEB49206 237779 SAMEA13490215 ERR7738276_bin.183 Contig 2022-04-02T10:00:22.610 USA human feces stanford university school of medicine 31.0x 98.3 0.34 99.99 0.05 GCF_934274085.1 CAKQSY01 1972 2043 2043 27 1 42 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_934277535.1 HMT-718 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_H_3_THA1060 Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_H_3_THA1060YZ.42 47 2119341 yes 39.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/277/535/GCA_934277535.1_ERR7738572_bin.42 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJEB49206 237779 SAMEA13487472 ERR7738572_bin.42 Contig 2022-04-02T09:58:17.830 Nepal human feces stanford university school of medicine 10.0x 99.89 0 100 0.03 GCF_934277535.1 CAKQUF01 2047 2113 2113 24 1 40 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_934667405.1 HMT-681 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_L_13_1278.16 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_L_13_1278.16 12 2196495 yes 60.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/667/405/GCA_934667405.1_ERR7746794_bin.16 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJEB49206 316088 SAMEA13472585 ERR7746794_bin.16 Contig 2022-04-02T09:48:27.513 Tanzania human feces stanford university school of medicine 24.0x 99.11 0 100 0.19 GCF_934667405.1 CAKULU01 1690 1756 1756 13 2 50 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_934667405.1 HMT-681 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_L_13_1278.16 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_L_13_1278.16 12 2196495 yes 60.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/667/405/GCA_934667405.1_ERR7746794_bin.16 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJEB49206 316088 SAMEA13472585 ERR7746794_bin.16 Contig 2022-04-02T09:48:27.513 Tanzania human feces stanford university school of medicine 24.0x 99.11 0 100 0.19 GCF_934667405.1 CAKULU01 1690 1756 1756 13 2 50 1 Rothia_mucilaginosa_HMT_147_681 GCA_934679015.1 HMT-681 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_A_17_1704.22 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_A_17_1704.22 38 1938932 yes 60.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/679/015/GCA_934679015.1_ERR7745376_bin.22 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJEB49206 316088 SAMEA13475328 ERR7745376_bin.22 Contig 2022-04-02T09:50:05.290 Tanzania human feces stanford university school of medicine 15.0x 83.67 0.67 90.34 0.01 GCF_934679015.1 CAKUSK01 1522 1585 1585 11 4 47 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_934679015.1 HMT-681 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_A_17_1704.22 Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_A_17_1704.22 38 1938932 yes 60.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/679/015/GCA_934679015.1_ERR7745376_bin.22 d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp902373285 PRJEB49206 316088 SAMEA13475328 ERR7745376_bin.22 Contig 2022-04-02T09:50:05.290 Tanzania human feces stanford university school of medicine 15.0x 83.67 0.67 90.34 0.01 GCF_934679015.1 CAKUSK01 1522 1585 1585 11 4 47 1 Rothia_mucilaginosa_HMT_147_681 GCA_934831285.1 HMT-118 MTG220_bin.40.fa Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus MTG220_bin.40.fa 228 1590841 yes 45.8 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/831/285/GCA_934831285.1_MTG220_bin.40.fa d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJEB50699 218538 SAMEA13566066 MTG220_bin.40.fa Scaffold 2022-07-29T08:27:03.640 not provided human gut UNIVERSITY OF NEW SOUTH WALES 4.0x 97.76 94.09 1.29 96.14 1.88 GCF_934831285.1 CAKVSM01 1516 1572 1572 28 0 27 1 Dialister_invisus_homd_HMT_118 GCA_934838025.1 HMT-118 MTG225_bin.45.fa Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus MTG225_bin.45.fa 76 1814295 yes 45.54 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/838/025/GCA_934838025.1_MTG225_bin.45.fa d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJEB50699 218538 SAMEA13566332 MTG225_bin.45.fa Scaffold 2022-07-29T08:27:13.656 not provided human gut UNIVERSITY OF NEW SOUTH WALES 4.0x 97.47 96.52 1.27 95.47 0.84 GCF_934838025.1 CAKWDM01 1712 1801 1801 49 1 38 1 Dialister_invisus_homd_HMT_118 GCA_934875275.1 HMT-118 MTG241_bin.47.fa Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus MTG241_bin.47.fa 119 1836853 yes 45.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/875/275/GCA_934875275.1_MTG241_bin.47.fa d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJEB50699 218538 SAMEA13567198 MTG241_bin.47.fa Scaffold 2022-07-29T08:27:43.440 not provided human gut UNIVERSITY OF NEW SOUTH WALES 4.0x 97.69 97.78 1.27 99.99 3.44 GCF_934875275.1 CAKXHC01 1753 1833 1833 37 1 40 2 Dialister_invisus_homd_HMT_118 GCA_936914865.1 HMT-835 SRR1950741_bin.19_CONCOCT_v1.1_MAG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-835 Corynebacterium mucifaciens SRR1950741_bin.19_CONCOCT_v1.1_MAG 66 2160475 yes 65.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/936/914/865/GCA_936914865.1_SRR1950741_bin.19_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium mucifaciens PRJEB51076 159447 SAMEA13902864 SRR1950741_bin.19_CONCOCT_v1.1 Contig metaspadesv3.11.1 2023-01-04T08:28:34.263 not provided human skin metagenome Illumina HiSeq 2000 European Bioinformatics Institute 26.0x 98.25 0.44 98.41 0.06 GCF_936914865.1 CAKZGF01 2058 2122 2122 8 2 53 1 Corynebacterium_mucifaciens_homd_HMT_835 GCA_936919755.1 HMT-832 SRR3184092_bin.37_CONCOCT_v1.1_MAG Named Cultivated Skin/Ear (Abundance: Medium) HMT-832 Corynebacterium otitidis SRR3184092_bin.37_CONCOCT_v1.1_MAG 225 2128438 yes 71.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/936/919/755/GCA_936919755.1_SRR3184092_bin.37_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium otitidis PRJEB51076 29321 SAMEA13902878 SRR3184092_bin.37_CONCOCT_v1.1 Contig metaspadesv3.12.0 2023-01-04T08:28:34.570 USA human skin metagenome Illumina HiSeq 2000 European Bioinformatics Institute 58.0x 99.71 95.85 0 99.88 0.83 CAKZGW01 1864 1932 1932 8 0 59 1 Corynebacterium_otitidis_homd_HMT_832 GCA_936919775.1 HMT-193 SRR6145093_bin.10_CONCOCT_v1.1_MAG Named Cultivated Skin (Abundance: Low) HMT-193 Cutibacterium modestum SRR6145093_bin.10_CONCOCT_v1.1_MAG 198 2879652 yes 60.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/936/919/775/GCA_936919775.1_SRR6145093_bin.10_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium modestum PRJEB51076 1912223 SAMEA13902907 SRR6145093_bin.10_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:28:35.253 Hong Kong human skin metagenome Illumina HiSeq 2000 European Bioinformatics Institute 27.0x 92.97 1.82 92.15 2.5 CAKZGT01 2898 2959 2959 21 3 36 1 Cutibacterium_modestum_homd_HMT_193 GCA_936919845.1 HMT-114 SRR3184093_bin.7_CONCOCT_v1.1_MAG Named Cultivated Skin (Abundance: High) HMT-114 Cutibacterium granulosum SRR3184093_bin.7_CONCOCT_v1.1_MAG 39 2239306 yes 64.14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/936/919/845/GCA_936919845.1_SRR3184093_bin.7_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium granulosum PRJEB51076 2161818 SAMEA13902879 SRR3184093_bin.7_CONCOCT_v1.1_ Contig metaspadesv3.12.0 2023-01-04T08:28:34.593 USA human skin metagenome Illumina HiSeq 2000 European Bioinformatics Institute 20.0x 83.55 99.12 0 96.8 0.47 CAKZHB01 1885 1950 1950 23 0 40 2 Cutibacterium_granulosum_homd_HMT_114 GCA_936925515.1 HMT-783 SRR2005651_bin.20_CONCOCT_v1.1_MAG Named NVP Cultivated Nasal (Abundance: High) HMT-783 Corynebacterium kefirresidentii SRR2005651_bin.20_CONCOCT_v1.1_MAG 35 2401179 yes 58.59 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/936/925/515/GCA_936925515.1_SRR2005651_bin.20_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium kefirresidentii PRJEB51076 159447 SAMEA13902872 SRR2005651_bin.20_CONCOCT_v1.1 Contig metaspadesv3.12.0 2023-01-04T08:28:34.450 Italy human skin metagenome Illumina HiSeq 2000 European Bioinformatics Institute 19.0x 99.78 0 100 0.03 GCF_936925515.1 CAKZHS01 2280 2338 2338 9 0 48 1 Corynebacterium_kefirresidentii_homd_HMT_783 GCA_936940875.1 HMT-331 SRR1621010_bin.14_CONCOCT_v1.1_MAG Named Cultivated Skin/Ear (Abundance: Scarce) HMT-331 Staphylococcus auricularis SRR1621010_bin.14_CONCOCT_v1.1_MAG 23 2231640 yes 37.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/936/940/875/GCA_936940875.1_SRR1621010_bin.14_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus auricularis PRJEB51076 29379 SAMEA13902850 SRR1621010_bin.14_CONCOCT_v1.1 Contig metaspadesv3.12.0 2023-01-04T08:28:33.873 USA human skin metagenome Illumina HiSeq 2000 European Bioinformatics Institute 38.0x 99.73 99.45 0.55 99.98 0.04 GCF_936940875.1 CAKZJA01 2160 2230 2230 42 1 26 1 Staphylococcus_auricularis_homd_HMT_331 GCA_936941285.1 HMT-831 SRR3183846_bin.53_CONCOCT_v1.1_MAG Named Cultivated Skin/Ear (Abundance: Scarce) HMT-831 Alloiococcus otitis SRR3183846_bin.53_CONCOCT_v1.1_MAG 81 1710563 yes 44.48 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/936/941/285/GCA_936941285.1_SRR3183846_bin.53_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alloiococcus;s__Alloiococcus otitis PRJEB51076 1652 SAMEA13902877 SRR3183846_bin.53_CONCOCT_v1.1 Contig metaspadesv3.12.0 2023-01-04T08:28:34.546 USA human skin metagenome Illumina HiSeq 2000 European Bioinformatics Institute 100.0x 96.48 97.28 0.54 98.18 0.46 CAKZJG01 1556 1630 1630 24 2 47 1 Alloiococcus_otitis_homd_HMT_831 GCA_937875745.1 HMT-060 SRR2077399_bin.31_CONCOCT_v1.1_MAG Named Cultivated Nasal (Abundance: High) HMT-060 Corynebacterium pseudodiphtheriticum SRR2077399_bin.31_CONCOCT_v1.1_MAG 51 2235438 yes 55.28 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/875/745/GCA_937875745.1_SRR2077399_bin.31_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium pseudodiphtheriticum PRJEB50943 37637 SAMEA14075746 SRR2077399_bin.31_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.866 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 17.0x 98.42 95.33 1.9 95.46 1.9 GCF_937875745.1 CALEGQ01 2017 2066 2066 6 1 41 1 Corynebacterium_pseudodiphtheriticum_homd_HMT_060 GCA_937875925.1 HMT-718 SRR2240958_bin.36_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae SRR2240958_bin.36_CONCOCT_v1.1_MAG 31 1923057 yes 39.45 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/875/925/GCA_937875925.1_SRR2240958_bin.36_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp001811025 PRJEB50943 729 SAMEA14075820 SRR2240958_bin.36_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:41.680 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 33.0x 93.99 99.89 0 100 0 CALFHH01 1825 1884 1884 23 0 35 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_937876545.1 HMT-873 SRR2240840_bin.21_CONCOCT_v1.1_MAG Phylotype Uncultivated Oral (Abundance: Scarce) HMT-873 Patescibacteria [C1 O1 F1 G2] bacterium HMT-873 SRR2240840_bin.21_CONCOCT_v1.1_MAG 57 892769 yes 36.62 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/876/545/GCA_937876545.1_SRR2240840_bin.21_CONCOCT_v1.1_MAG d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__BD1-5;f__UBA2023;g__GN02-873;s__GN02-873 sp003260345 PRJEB50943 363504 SAMEA14075809 SRR2240840_bin.21_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:41.433 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 25.0x 68.38 0 96.44 0.16 CALFGZ01 1151 1187 1187 1 1 34 0 Patescibacteria__C1_O1_F1_G2__bacterium_HMT_873_homd_HMT_873 GCA_937876575.1 HMT-813 SRR2077399_bin.1_CONCOCT_v1.1_MAG Named Cultivated Nasal (Abundance: Medium) HMT-813 Dolosigranulum pigrum SRR2077399_bin.1_CONCOCT_v1.1_MAG 23 1886320 yes 39.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/876/575/GCA_937876575.1_SRR2077399_bin.1_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum;s__Dolosigranulum pigrum PRJEB50943 29394 SAMEA14075745 SRR2077399_bin.1_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:29:39.843 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 73.0x 97.59 99.46 1.9 99.41 0.29 GCF_937876575.1 CALFGV01 1749 1830 1830 66 0 14 1 Dolosigranulum_pigrum_homd_HMT_813 GCA_937881025.1 HMT-775 SRR2240920_bin.30_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-775 Capnocytophaga sputigena SRR2240920_bin.30_CONCOCT_v1.1_MAG 84 2757173 yes 38.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/881/025/GCA_937881025.1_SRR2240920_bin.30_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena PRJEB50943 1019 SAMEA14075818 SRR2240920_bin.30_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:41.640 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 57.0x 96.39 95.71 0.95 95.12 2.23 GCF_937881025.1 CALGFZ01 2489 2527 2527 7 1 29 1 Capnocytophaga_sputigena_homd_HMT_775 GCA_937888685.1 HMT-279 SRR1952623_bin.4_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-279 Porphyromonas pasteri SRR1952623_bin.4_CONCOCT_v1.1_MAG 45 2243765 yes 55.69 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/888/685/GCA_937888685.1_SRR1952623_bin.4_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas pasteri PRJEB50943 159274 SAMEA14075742 SRR1952623_bin.4_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:29:39.780 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 86.0x 98.87 0 99.91 0.83 GCF_937888685.1 CALBEZ01 1732 1789 1789 8 1 47 1 Porphyromonas_pasteri_homd_HMT_279 GCA_937889145.1 HMT-714 SRR1952591_bin.88_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-714 Prevotella pallens SRR1952591_bin.88_CONCOCT_v1.1_MAG 83 2732166 yes 37.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/889/145/GCA_937889145.1_SRR1952591_bin.88_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella pallens PRJEB50943 60133 SAMEA14075730 SRR1952591_bin.88_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.523 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 55.0x 98.49 99.66 0 99.95 0.27 GCF_937889145.1 CALBEW01 2223 2270 2270 9 1 36 1 Prevotella_pallens_homd_HMT_714 GCA_937890275.1 HMT-718 SRR1952507_bin.57_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae SRR1952507_bin.57_CONCOCT_v1.1_MAG 52 2191166 yes 39.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/890/275/GCA_937890275.1_SRR1952507_bin.57_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp014931275 PRJEB50943 729 SAMEA14075713 SRR1952507_bin.57_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.133 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 93.0x 93.35 99.66 0.3 100 0.03 CALBXJ01 2084 2150 2150 27 3 35 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_937890375.1 HMT-082 SRR1952558_bin.17_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-082 Lachnoanaerobaculum orale SRR1952558_bin.17_CONCOCT_v1.1_MAG 153 2664875 yes 37.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/890/375/GCA_937890375.1_SRR1952558_bin.17_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum orale PRJEB50943 1662275 SAMEA14075721 SRR1952558_bin.17_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.333 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 15.0x 99.36 0 97.06 0.07 GCF_937890375.1 CALACI01 2406 2455 2455 15 0 33 1 Lachnoanaerobaculum_orale_homd_HMT_082 GCA_937890405.1 HMT-681 SRR1952379_bin.15_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR1952379_bin.15_CONCOCT_v1.1_MAG 90 2379345 yes 59.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/890/405/GCA_937890405.1_SRR1952379_bin.15_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJEB50943 316088 SAMEA14075696 SRR1952379_bin.15_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:38.760 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 163.0x 98.67 0 100 0.06 GCF_937890405.1 CALACA01 1868 1930 1930 12 4 45 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_937890405.1 HMT-681 SRR1952379_bin.15_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR1952379_bin.15_CONCOCT_v1.1_MAG 90 2379345 yes 59.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/890/405/GCA_937890405.1_SRR1952379_bin.15_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001836735 PRJEB50943 316088 SAMEA14075696 SRR1952379_bin.15_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:38.760 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 163.0x 98.67 0 100 0.06 GCF_937890405.1 CALACA01 1868 1930 1930 12 4 45 1 Rothia_mucilaginosa_HMT_147_681 GCA_937890425.1 HMT-013 SRR1952572_bin.59_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-013 Neisseria bacilliformis SRR1952572_bin.59_CONCOCT_v1.1_MAG 216 2197701 yes 59.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/890/425/GCA_937890425.1_SRR1952572_bin.59_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria bacilliformis PRJEB50943 265175 SAMEA14075725 SRR1952572_bin.59_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.416 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 24.0x 86.99 96.03 2.49 98.24 1.94 CALACJ01 2048 2094 2094 8 0 37 1 Neisseria_bacilliformis_homd_HMT_013 GCA_937891685.1 HMT-413 SRR1952431_bin.72_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-413 Alloprevotella sp. HMT-413 SRR1952431_bin.72_CONCOCT_v1.1_MAG 41 2561453 yes 47.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/891/685/GCA_937891685.1_SRR1952431_bin.72_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella massiliensis PRJEB50943 370804 SAMEA14075697 SRR1952431_bin.72_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:38.780 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 45.0x 97.3 0.74 96.79 0.41 CALAHJ01 2017 2061 2061 6 1 36 1 Alloprevotella_sp_HMT_413_homd_HMT_413 GCA_937891745.1 HMT-337 SRR1952462_bin.7_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-337 Capnocytophaga gingivalis SRR1952462_bin.7_CONCOCT_v1.1_MAG 61 2553925 yes 40.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/891/745/GCA_937891745.1_SRR1952462_bin.7_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga gingivalis PRJEB50943 1017 SAMEA14075705 SRR1952462_bin.7_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:29:38.946 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 28.0x 96.46 100 0.48 99.92 0.92 GCF_937891745.1 CALAHR01 2382 2426 2426 7 2 34 1 Capnocytophaga_gingivalis_homd_HMT_337 GCA_937893325.1 HMT-780 SRR1952502_bin.2_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: High) HMT-780 Veillonella sp. HMT-780 SRR1952502_bin.2_CONCOCT_v1.1_MAG 23 1778081 yes 39.09 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/893/325/GCA_937893325.1_SRR1952502_bin.2_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422;s__F0422 sp001553345 PRJEB50943 159268 SAMEA14075706 SRR1952502_bin.2_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:29:38.980 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 80.0x 98.68 0.6 99.54 0.82 CALBXG01 1549 1602 1602 24 1 27 1 Veillonella_sp_HMT_780_homd_HMT_780 GCA_937897765.1 HMT-444 ERR1332622_bin.1_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-444 Streptococcus infantis clade-444 ERR1332622_bin.1_CONCOCT_v1.1_MAG 46 1695900 yes 39.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/897/765/GCA_937897765.1_ERR1332622_bin.1_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_B PRJEB51072 68892 SAMEA14081605 ERR1332622_bin.1_CONCOCT_v1.1_ Contig metaspadesv3.11.1 2023-01-04T08:30:16.916 USA metagenome Illumina HiSeq 1500 European Bioinformatics Institute 18.0x 89.8 99.66 0.49 99.97 0.38 GCF_937897765.1 CALCQD01 1658 1720 1720 30 0 31 1 Streptococcus_infantis_HMT_061_431_444_638 GCA_937897765.1 HMT-444 ERR1332622_bin.1_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-444 Streptococcus infantis clade-444 ERR1332622_bin.1_CONCOCT_v1.1_MAG 46 1695900 yes 39.26 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/897/765/GCA_937897765.1_ERR1332622_bin.1_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus infantis_B PRJEB51072 68892 SAMEA14081605 ERR1332622_bin.1_CONCOCT_v1.1_ Contig metaspadesv3.11.1 2023-01-04T08:30:16.916 USA metagenome Illumina HiSeq 1500 European Bioinformatics Institute 18.0x 89.8 99.66 0.49 99.97 0.38 GCF_937897765.1 CALCQD01 1658 1720 1720 30 0 31 1 Streptococcus_infantis_clade_444_homd_HMT_444 GCA_937900105.1 HMT-943 SRR1952507_bin.46_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-943 Prevotella aurantiaca SRR1952507_bin.46_CONCOCT_v1.1_MAG 146 2561568 yes 38.53 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/900/105/GCA_937900105.1_SRR1952507_bin.46_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella aurantiaca PRJEB50943 596085 SAMEA14075712 SRR1952507_bin.46_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.110 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 16.0x 98.39 97.72 1.13 99.17 0.98 GCF_937900105.1 CALCFI01 2097 2133 2133 7 0 28 1 Prevotella_aurantiaca_homd_HMT_943 GCA_937900375.1 HMT-218 SRR1952591_bin.11_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-218 Leptotrichia sp. HMT-218 SRR1952591_bin.11_CONCOCT_v1.1_MAG 218 1277788 yes 28.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/900/375/GCA_937900375.1_SRR1952591_bin.11_CONCOCT_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia sp018128225 PRJEB50943 159271 SAMEA14075728 SRR1952591_bin.11_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.483 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 67.0x 74.58 0.37 76.33 0.14 CALCFO01 1145 1163 1163 12 0 5 1 Leptotrichia_sp_HMT_218_homd_HMT_218 GCA_937906735.1 HMT-466 SRR1952611_bin.42_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-466 Alloprevotella tannerae SRR1952611_bin.42_CONCOCT_v1.1_MAG 71 2301845 yes 47.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/906/735/GCA_937906735.1_SRR1952611_bin.42_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella tannerae PRJEB50943 76122 SAMEA14075737 SRR1952611_bin.42_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.673 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 26.0x 97.06 98.5 0 99.94 0.03 CALCXS01 1921 1972 1972 4 3 43 1 Alloprevotella_tannerae_homd_HMT_466 GCA_937906745.1 HMT-457 SRR1952602_bin.29_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-457 Oribacterium sinus SRR1952602_bin.29_CONCOCT_v1.1_MAG 233 2491691 yes 43.52 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/906/745/GCA_937906745.1_SRR1952602_bin.29_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium sinus PRJEB50943 1501329 SAMEA14075735 SRR1952602_bin.29_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.626 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 11.0x 89.48 95.73 0 90.75 0.38 CALCXX01 2101 2161 2161 16 3 40 1 Oribacterium_sinus_homd_HMT_457 GCA_937910295.1 HMT-181 SRR2077401_bin.16_CONCOCT_v1.1_MAG Named NVP Cultivated Oral (Abundance: Medium) HMT-181 Schaalia lingnae SRR2077401_bin.16_CONCOCT_v1.1_MAG 215 1999506 yes 55.95 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/910/295/GCA_937910295.1_SRR2077401_bin.16_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia sp000308055 PRJEB50943 249061 SAMEA14075748 SRR2077401_bin.16_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.910 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 23.0x 93.57 2.64 88.46 2.77 CALENC01 1784 1828 1828 7 1 35 1 Schaalia_lingnae_homd_HMT_181 GCA_937914765.1 HMT-158 SRR2240918_bin.21_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-158 Veillonella rogosae SRR2240918_bin.21_CONCOCT_v1.1_MAG 153 2177883 yes 38.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/914/765/GCA_937914765.1_SRR2240918_bin.21_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella rogosae PRJEB50943 159268 SAMEA14075815 SRR2240918_bin.21_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:41.570 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 103.0x 97.01 0.9 99.84 1.46 GCF_937914765.1 CALDNS01 2004 2060 2060 21 1 33 1 Veillonella_rogosae_homd_HMT_158 GCA_937919105.1 HMT-019 SRR2077399_bin.34_CONCOCT_v1.1_MAG Named Cultivated Nasal (Abundance: High) HMT-019 Corynebacterium accolens SRR2077399_bin.34_CONCOCT_v1.1_MAG 279 2192490 yes 59.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/919/105/GCA_937919105.1_SRR2077399_bin.34_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium accolens PRJEB50943 159447 SAMEA14075747 SRR2077399_bin.34_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:39.886 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 12.0x 90.45 0.92 88.49 0.97 CALFON01 2115 2153 2153 7 1 29 1 Corynebacterium_accolens_homd_HMT_019 GCA_937919505.1 HMT-658 SRR2240920_bin.15_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-658 Hoylesella loescheii SRR2240920_bin.15_CONCOCT_v1.1_MAG 49 3451367 yes 46.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/919/505/GCA_937919505.1_SRR2240920_bin.15_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella loescheii PRJEB50943 840 SAMEA14075817 SRR2240920_bin.15_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:41.610 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 72.0x 96.34 99.59 0.34 98.67 0.01 GCF_937919505.1 CALFPC01 2727 2774 2774 8 1 36 2 Hoylesella_loescheii_homd_HMT_658 GCA_937919565.1 HMT-633 SRR2240840_bin.17_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-633 Cardiobacterium hominis SRR2240840_bin.17_CONCOCT_v1.1_MAG 239 2581702 yes 59.42 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/919/565/GCA_937919565.1_SRR2240840_bin.17_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium;s__Cardiobacterium hominis PRJEB50943 2718 SAMEA14075807 SRR2240840_bin.17_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:29:41.353 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 19.0x 96.92 96.34 1.47 96.74 0.76 GCF_937919565.1 CALFOW01 2493 2554 2554 19 1 40 1 Cardiobacterium_hominis_homd_HMT_633 GCA_937919835.1 HMT-426 SRR2240840_bin.2_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-426 Aggregatibacter kilianii SRR2240840_bin.2_CONCOCT_v1.1_MAG 62 2304117 yes 42.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/919/835/GCA_937919835.1_SRR2240840_bin.2_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter kilianii PRJEB50943 2025884 SAMEA14075808 SRR2240840_bin.2_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:29:41.410 not provided metagenome Illumina HiSeq 2000 European Bioinformatics Institute 24.0x 97.18 97.84 0.25 98.22 0.01 GCF_937919835.1 CALFOU01 2139 2239 2239 62 2 35 1 Aggregatibacter_kilianii_homd_HMT_426 GCA_937920795.1 HMT-552 SRR3546782_bin.26_CONCOCT_v1.1_MAG Named Cultivated Skin (Abundance: Medium) HMT-552 Cutibacterium avidum SRR3546782_bin.26_CONCOCT_v1.1_MAG 29 2618718 yes 63.41 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/920/795/GCA_937920795.1_SRR3546782_bin.26_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium avidum PRJEB51075 33010 SAMEA14085701 SRR3546782_bin.26_CONCOCT_v1.1 Contig metaspadesv3.11.1 2023-01-04T08:32:14.090 USA human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 77.0x 96.36 100 0.66 99.98 1.18 GCF_937920795.1 CALETT01 2391 2467 2467 26 3 46 1 Cutibacterium_avidum_homd_HMT_552 GCA_937921215.1 HMT-785 ERR912144_bin.107_CONCOCT_v1.1_MAG Named Cultivated Vaginal (Abundance: Medium) HMT-785 Porphyromonas uenonis ERR912144_bin.107_CONCOCT_v1.1_MAG 100 2104354 yes 52.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/921/215/GCA_937921215.1_ERR912144_bin.107_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas uenonis_A PRJEB51075 281920 SAMEA14085374 ERR912144_bin.107_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:32:03.380 United Kingdom human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 15.0x 93.6 99.92 0.16 99.75 0.64 GCF_937921215.1 CALEUU01 1686 1742 1742 11 2 42 1 Porphyromonas_uenonis_homd_HMT_785 GCA_937921715.1 HMT-569 ERR589631_bin.95_CONCOCT_v1.1_MAG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-569 Eggerthia catenaformis ERR589631_bin.95_CONCOCT_v1.1_MAG 32 1700661 yes 31.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/921/715/GCA_937921715.1_ERR589631_bin.95_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Eggerthia;s__Eggerthia catenaformis PRJEB51075 31973 SAMEA14084831 ERR589631_bin.95_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:45.136 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 13.0x 97.99 99.06 0 99.88 0.16 GCF_937921715.1 CAKZTW01 1677 1727 1727 23 1 25 1 Eggerthia_catenaformis_homd_HMT_569 GCA_937921785.1 HMT-378 ERR589641_bin.81_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Low) HMT-378 Prevotella micans ERR589641_bin.81_CONCOCT_v1.1_MAG 96 2298888 yes 45.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/921/785/GCA_937921785.1_ERR589641_bin.81_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella micans PRJEB51075 189723 SAMEA14084854 ERR589641_bin.81_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:45.996 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 23.0x 98.28 99.29 0.18 98.84 0.05 CAKZUD01 1881 1931 1931 8 2 39 1 Prevotella_micans_homd_HMT_378 GCA_937922535.1 HMT-131 ERR589661_bin.72_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Scarce) HMT-131 Mitsuokella sp. HMT-131 ERR589661_bin.72_CONCOCT_v1.1_MAG 84 2443777 yes 56.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/922/535/GCA_937922535.1_ERR589661_bin.72_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__AWVT01;s__AWVT01 sp000469545 PRJEB51075 453120 SAMEA14084898 ERR589661_bin.72_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:47.673 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 124.0x 98.91 1.27 100 2.9 GCF_937922535.1 CALAIN01 2297 2361 2361 22 0 41 1 Mitsuokella_sp_HMT_131_homd_HMT_131 GCA_937922685.1 HMT-274 SRR9217414_bin.53_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: High) HMT-274 Paludibacteraceae [G1] bacterium HMT-274 SRR9217414_bin.53_CONCOCT_v1.1_MAG 73 2140109 yes 42.84 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/922/685/GCA_937922685.1_SRR9217414_bin.53_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__F0058;s__F0058 sp000163695 PRJEB51075 152509 SAMEA14086161 SRR9217414_bin.53_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:33.086 Italy human gut metagenome Illumina HiSeq 2500 European Bioinformatics Institute 127.0x 98.39 1.08 99.33 1.79 CALAJE01 1938 1989 1989 11 1 39 0 Paludibacteraceae__G1__bacterium_HMT_274_homd_HMT_274 GCA_937922695.1 HMT-178 ERR589658_bin.20_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Low) HMT-178 Schaalia hongkongensis ERR589658_bin.20_CONCOCT_v1.1_MAG 106 2604341 yes 70.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/922/695/GCA_937922695.1_ERR589658_bin.20_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;s__Pauljensenia hongkongensis PRJEB51075 249061 SAMEA14084888 ERR589658_bin.20_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:47.256 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 44.0x 99.25 1.58 99.8 0.19 CALAIK01 2196 2258 2258 7 0 54 1 Schaalia_hongkongensis_homd_HMT_178 GCA_937922855.1 HMT-579 ERR589647_bin.24_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-579 Cryptobacterium curtum ERR589647_bin.24_CONCOCT_v1.1_MAG 17 1585518 yes 50.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/922/855/GCA_937922855.1_ERR589647_bin.24_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Cryptobacterium;s__Cryptobacterium curtum PRJEB51075 84163 SAMEA14084873 ERR589647_bin.24_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:46.680 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 18.0x 97.85 100 0 99.95 0 GCF_937922855.1 CALAIH01 1328 1383 1383 8 1 45 1 Cryptobacterium_curtum_homd_HMT_579 GCA_937923135.1 HMT-723 ERR589666_bin.30_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-723 Lancefieldella parvula ERR589666_bin.30_CONCOCT_v1.1_MAG 20 1536504 yes 45.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/923/135/GCA_937923135.1_ERR589666_bin.30_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__Lancefieldella parvula PRJEB51075 274587 SAMEA14084903 ERR589666_bin.30_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:47.883 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 27.0x 100 0 99.96 0.21 CALAIM01 1322 1380 1380 9 3 46 0 Lancefieldella_parvula_homd_HMT_723 GCA_937924665.1 HMT-275 SRR8114033_bin.79_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Scarce) HMT-275 Porphyromonas sp. HMT-275 SRR8114033_bin.79_CONCOCT_v1.1_MAG 263 1849793 yes 62.07 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/924/665/GCA_937924665.1_SRR8114033_bin.79_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas sp018127745 PRJEB51075 159274 SAMEA14086090 SRR8114033_bin.79_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:29.910 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 9.0x 89.49 2.46 83.77 2.31 CALEVQ01 1396 1420 1420 7 0 16 1 Porphyromonas_sp_HMT_275_homd_HMT_275 GCA_937924935.1 HMT-763 ERR589686_bin.50_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-763 Campylobacter showae ERR589686_bin.50_CONCOCT_v1.1_MAG 251 2229356 yes 44.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/924/935/GCA_937924935.1_ERR589686_bin.50_CONCOCT_v1.1_MAG d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;s__Campylobacter_A showae_A PRJEB51075 204 SAMEA14084925 ERR589686_bin.50_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:49.276 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 9.0x 92.29 98.3 0.74 96.71 2.12 GCF_937924935.1 CALEYF01 2180 2220 2220 5 2 32 1 Campylobacter_showae_homd_HMT_763 GCA_937924985.1 HMT-698 ERR589725_bin.7_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Low) HMT-698 Fusobacterium nucleatum_sensu_stricto ERR589725_bin.7_CONCOCT_v1.1_MAG 213 2291808 yes 27.11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/924/985/GCA_937924985.1_ERR589725_bin.7_CONCOCT_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum PRJEB51075 851 SAMEA14084973 ERR589725_bin.7_CONCOCT_v1.1_M Contig spadesv3.11.1 2023-01-04T08:31:50.770 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 12.0x 98.54 95.28 2.62 93.98 4.02 GCF_937924985.1 CALEYI01 2220 2263 2263 16 3 23 1 Fusobacterium_nucleatum_sensu_stricto_homd_HMT_698 GCA_937925075.1 HMT-113 ERR589356_bin.114_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Scarce) HMT-113 Peptoniphilaceae [G1] bacterium HMT-113 ERR589356_bin.114_CONCOCT_v1.1_MAG 279 1193342 yes 39.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/925/075/GCA_937925075.1_ERR589356_bin.114_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__W5053;s__W5053 sp000467935 PRJEB51075 331629 SAMEA14084521 ERR589356_bin.114_CONCOCT_v1.1 Contig metaspadesv3.10.0 2023-01-04T08:31:33.603 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 6.0x 72.73 1.92 74.26 1.58 CALEXS01 1109 1140 1140 15 1 14 1 Peptoniphilaceae__G1__bacterium_HMT_113_homd_HMT_113 GCA_937925415.1 HMT-046 ERR589607_bin.15_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-046 Gemella morbillorum ERR589607_bin.15_CONCOCT_v1.1_MAG 73 1658063 yes 30.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/925/415/GCA_937925415.1_ERR589607_bin.15_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella morbillorum PRJEB51075 29391 SAMEA14084786 ERR589607_bin.15_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:43.190 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 20.0x 96.23 98.28 1.01 99.96 1.11 GCF_937925415.1 CALALO01 1549 1584 1584 22 1 11 1 Gemella_morbillorum_homd_HMT_046 GCA_937925425.1 HMT-357 SRR3160452_bin.69_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-357 Pyramidobacter piscolens SRR3160452_bin.69_CONCOCT_v1.1_MAG 74 2545610 yes 60.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/925/425/GCA_937925425.1_SRR3160452_bin.69_CONCOCT_v1.1_MAG d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter;s__Pyramidobacter piscolens PRJEB51075 638849 SAMEA14085677 SRR3160452_bin.69_CONCOCT_v1.1 Contig metaspadesv3.11.1 2023-01-04T08:32:13.226 USA human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 19.0x 99.11 100 0 99.15 0.51 GCF_937925425.1 CALEVY01 2303 2376 2376 20 3 49 1 Pyramidobacter_piscolens_homd_HMT_357 GCA_937925875.1 HMT-946 SRR5558175_bin.43_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-946 Haemophilus pittmaniae SRR5558175_bin.43_CONCOCT_v1.1_MAG 104 1982353 yes 42.37 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/925/875/GCA_937925875.1_SRR5558175_bin.43_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D pittmaniae PRJEB51075 249188 SAMEA14085857 SRR5558175_bin.43_CONCOCT_v1.1 Contig metaspades_v3.13.0 2023-01-04T08:32:20.026 Spain human gut metagenome NextSeq 500 European Bioinformatics Institute 9.0x 98.59 91.25 3.11 90.76 3.55 CALAMW01 1839 1891 1891 21 1 29 1 Haemophilus_pittmaniae_homd_HMT_946 GCA_937926735.1 HMT-299 SRR8114039_bin.50_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-299 Hoylesella nanceiensis SRR8114039_bin.50_CONCOCT_v1.1_MAG 13 2600230 yes 38.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/926/735/GCA_937926735.1_SRR8114039_bin.50_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nanceiensis PRJEB51075 425941 SAMEA14086095 SRR8114039_bin.50_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:30.280 Luxembourg human gut metagenome NextSeq 500 European Bioinformatics Institute 23.0x 97.43 99.16 0.17 99.85 0.02 GCF_937926735.1 CALBAQ01 2050 2104 2104 7 0 46 1 Hoylesella_nanceiensis_homd_HMT_299 GCA_937926905.1 HMT-221 SRR8114063_bin.23_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-221 Leptotrichia sp. HMT-221 SRR8114063_bin.23_CONCOCT_v1.1_MAG 138 1573472 yes 28.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/926/905/GCA_937926905.1_SRR8114063_bin.23_CONCOCT_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__JABCPH02;s__JABCPH02 sp013333235 PRJEB51075 159271 SAMEA14086108 SRR8114063_bin.23_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:30.773 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 11.0x 90.82 2.36 80.7 1.14 CALBAS01 1415 1456 1456 19 0 21 1 Leptotrichia_sp_HMT_221_homd_HMT_221 GCA_937926985.1 HMT-700 ERR589597_bin.12_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-700 Capnocytophaga ochracea ERR589597_bin.12_CONCOCT_v1.1_MAG 165 2429053 yes 39.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/926/985/GCA_937926985.1_ERR589597_bin.12_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea PRJEB51075 159273 SAMEA14084762 ERR589597_bin.12_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:42.333 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 10.0x 97.62 0.48 99.66 0.03 GCF_937926985.1 CALBCK01 2024 2065 2065 10 1 29 1 Capnocytophaga_ochracea_homd_HMT_700 GCA_937927005.1 HMT-768 ERR589515_bin.80_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-768 Streptococcus sobrinus ERR589515_bin.80_CONCOCT_v1.1_MAG 57 2101273 yes 43.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/927/005/GCA_937927005.1_ERR589515_bin.80_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sobrinus PRJEB51075 1310 SAMEA14084728 ERR589515_bin.80_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:41.120 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 22.0x 99.12 98.33 0 97.35 0.17 CALBCI01 1950 2001 2001 33 0 17 1 Streptococcus_sobrinus_homd_HMT_768 GCA_937927035.1 HMT-183 ERR589515_bin.73_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-183 Peptidiphaga sp. HMT-183 ERR589515_bin.73_CONCOCT_v1.1_MAG 32 2411043 yes 67.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/927/035/GCA_937927035.1_ERR589515_bin.73_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Peptidiphaga;s__Peptidiphaga sp000466165 PRJEB51075 655643 SAMEA14084727 ERR589515_bin.73_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:41.086 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 123.0x 100 0 100 0.12 CALBCH01 2072 2126 2126 6 0 47 1 Peptidiphaga_sp_HMT_183_homd_HMT_183 GCA_937927175.1 HMT-289 ERR589377_bin.20_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-289 Segatella maculosa ERR589377_bin.20_CONCOCT_v1.1_MAG 160 2688965 yes 48.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/927/175/GCA_937927175.1_ERR589377_bin.20_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella maculosa PRJEB51075 439703 SAMEA14084578 ERR589377_bin.20_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:35.830 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 10.0x 97.52 96.47 0.53 92.76 0.66 GCF_937927175.1 CALBBY01 2195 2230 2230 8 0 27 0 Segatella_maculosa_homd_HMT_289 GCA_937927245.1 HMT-188 ERR589473_bin.57_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-188 Rothia aeria ERR589473_bin.57_CONCOCT_v1.1_MAG 34 2581706 yes 56.85 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/927/245/GCA_937927245.1_ERR589473_bin.57_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia aeria PRJEB51075 172042 SAMEA14084680 ERR589473_bin.57_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:39.343 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 18.0x 97.52 98.34 0 100 0.04 CALBCE01 2220 2307 2307 12 7 67 1 Rothia_aeria_homd_HMT_188 GCA_937930255.1 HMT-389 ERR589701_bin.29_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-389 Abiotrophia defectiva ERR589701_bin.29_CONCOCT_v1.1_MAG 122 2043240 yes 46.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/930/255/GCA_937930255.1_ERR589701_bin.29_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;s__Abiotrophia defectiva PRJEB51075 46125 SAMEA14084946 ERR589701_bin.29_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:49.936 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 10.0x 95.51 98.32 0.54 98.55 1.53 GCF_937930255.1 CALGLG01 1854 1892 1892 19 2 16 1 Abiotrophia_defectiva_homd_HMT_389 GCA_937930665.1 HMT-626 ERR589426_bin.13_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 ERR589426_bin.13_CONCOCT_v1.1_MAG 190 1856764 yes 30.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/930/665/GCA_937930665.1_ERR589426_bin.13_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_B PRJEB51075 254352 SAMEA14084615 ERR589426_bin.13_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:37.143 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 10.0x 97.46 2.49 99.9 2.72 GCF_937930665.1 CALHBY01 1651 1702 1702 33 2 15 1 Gemella_haemolysans_HMT_434_626 GCA_937930665.1 HMT-626 ERR589426_bin.13_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-626 Gemella haemolysans clade-626 ERR589426_bin.13_CONCOCT_v1.1_MAG 190 1856764 yes 30.74 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/930/665/GCA_937930665.1_ERR589426_bin.13_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella haemolysans_B PRJEB51075 254352 SAMEA14084615 ERR589426_bin.13_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:37.143 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 10.0x 97.46 2.49 99.9 2.72 GCF_937930665.1 CALHBY01 1651 1702 1702 33 2 15 1 Gemella_haemolysans_clade_626_homd_HMT_626 GCA_937934505.1 HMT-421 SRR11615773_bin.97_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-421 Veillonella tobetsuensis SRR11615773_bin.97_CONCOCT_v1.1_MAG 30 2058485 yes 38.72 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/934/505/GCA_937934505.1_SRR11615773_bin.97_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella tobetsuensis PRJEB51075 1110546 SAMEA14085438 SRR11615773_bin.97_CONCOCT_v1. Contig metaSPAdes v3.14.1 2023-01-04T08:32:05.140 Israel human gut metagenome Illumina NovaSeq 6000 European Bioinformatics Institute 55.0x 97.28 100 0.21 100 2.09 GCF_937934505.1 CALGZP01 1921 1978 1978 18 2 36 1 Veillonella_tobetsuensis_homd_HMT_421 GCA_937936115.1 HMT-101 SRR8114063_bin.40_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-101 Neisseria perflava SRR8114063_bin.40_CONCOCT_v1.1_MAG 23 2144886 yes 49.16 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/936/115/GCA_937936115.1_SRR8114063_bin.40_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria perflava PRJEB51075 237778 SAMEA14086109 SRR8114063_bin.40_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:30.816 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 19.0x 99.92 0 100 0.04 GCF_937936115.1 CALGWQ01 2018 2085 2085 18 0 48 1 Neisseria_perflava_homd_HMT_101 GCA_937936225.1 HMT-325 SRR8114096_bin.65_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-325 Capnocytophaga granulosa SRR8114096_bin.65_CONCOCT_v1.1_MAG 114 2596221 yes 41.63 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/936/225/GCA_937936225.1_SRR8114096_bin.65_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga granulosa PRJEB51075 45242 SAMEA14086124 SRR8114096_bin.65_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:31.316 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 21.0x 96.63 100 1.22 99.66 3.24 GCF_937936225.1 CALGWW01 2424 2472 2472 9 1 37 1 Capnocytophaga_granulosa_homd_HMT_325 GCA_937936265.1 HMT-681 SRR8114056_bin.73_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR8114056_bin.73_CONCOCT_v1.1_MAG 70 2266204 yes 59.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/936/265/GCA_937936265.1_SRR8114056_bin.73_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJEB51075 43675 SAMEA14086103 SRR8114056_bin.73_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:30.563 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 28.0x 94.29 99.33 0.07 100 0.06 GCF_937936265.1 CALGWP01 1752 1818 1818 12 4 49 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_937936265.1 HMT-681 SRR8114056_bin.73_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR8114056_bin.73_CONCOCT_v1.1_MAG 70 2266204 yes 59.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/936/265/GCA_937936265.1_SRR8114056_bin.73_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia sp001808955 PRJEB51075 43675 SAMEA14086103 SRR8114056_bin.73_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:30.563 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 28.0x 94.29 99.33 0.07 100 0.06 GCF_937936265.1 CALGWP01 1752 1818 1818 12 4 49 1 Rothia_mucilaginosa_HMT_147_681 GCA_937940695.1 HMT-929 SRR12395661_bin.83_CONCOCT_v1.1_MAG Unnamed Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-929 Peptoniphilaceae [G3] bacterium HMT-929 SRR12395661_bin.83_CONCOCT_v1.1_MAG 135 1569458 yes 34.66 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/940/695/GCA_937940695.1_SRR12395661_bin.83_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria;s__Fenollaria massiliensis PRJEB51075 244328 SAMEA14085499 SRR12395661_bin.83_CONCOCT_v1. Contig metaSPAdes v3.14.1 2023-01-04T08:32:06.773 Canada human gut metagenome Illumina NovaSeq 6000 European Bioinformatics Institute 14.0x 96.97 0.93 98.38 2.12 CALDBA01 1483 1526 1526 19 0 23 1 Fenollaria_massiliensis_homd_HMT_929 GCA_937945075.1 HMT-718 SRR2047620_bin.6_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae SRR2047620_bin.6_CONCOCT_v1.1_MAG 21 1968698 yes 39.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/945/075/GCA_937945075.1_SRR2047620_bin.6_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae_M PRJEB51075 729 SAMEA14085602 SRR2047620_bin.6_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:32:10.506 USA human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 24.0x 93.32 99.89 0 100 0 CALFAW01 1883 1947 1947 31 1 31 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_937950115.1 HMT-311 ERR589659_bin.87_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-311 Segatella oris ERR589659_bin.87_CONCOCT_v1.1_MAG 216 2476930 yes 44.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/950/115/GCA_937950115.1_ERR589659_bin.87_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella oris PRJEB51075 28135 SAMEA14084893 ERR589659_bin.87_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:47.436 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 8.0x 97.87 93.47 1.28 88.68 1.8 CALFEH01 2054 2084 2084 8 0 22 0 Segatella_oris_homd_HMT_311 GCA_937950445.1 HMT-619 SRR9217400_bin.5_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-619 Porphyromonas gingivalis SRR9217400_bin.5_CONCOCT_v1.1_MAG 71 2069690 yes 48.71 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/950/445/GCA_937950445.1_SRR9217400_bin.5_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivalis PRJEB51075 837 SAMEA14086155 SRR9217400_bin.5_CONCOCT_v1.1_ Contig metaSPAdes v3.14.1 2023-01-04T08:32:32.893 Italy human gut metagenome Illumina HiSeq 2500 European Bioinformatics Institute 137.0x 98.68 99.61 0 99.97 0.05 CALFDF01 1725 1781 1781 8 2 45 1 Porphyromonas_gingivalis_homd_HMT_619 GCA_937957785.1 HMT-024 SRR4028141_bin.28_CONCOCT_v1.1_MAG Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-024 Schlegelella thermodepolymerans SRR4028141_bin.28_CONCOCT_v1.1_MAG 66 4034248 yes 70.19 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/957/785/GCA_937957785.1_SRR4028141_bin.28_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Caldimonas;s__Caldimonas thermodepolymerans PRJEB51072 215580 SAMEA14082025 SRR4028141_bin.28_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:30:32.460 USA metagenome Illumina HiSeq 2000 European Bioinformatics Institute 309.0x 99.75 98.91 2.92 100 2.42 GCF_937957785.1 CALFFA01 3798 3868 3868 18 1 50 1 Schlegelella_thermodepolymerans_homd_HMT_024 GCA_937957905.1 HMT-806 ERR589661_bin.12_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-806 Olsenella profusa ERR589661_bin.12_CONCOCT_v1.1_MAG 99 2704514 yes 63.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/957/905/GCA_937957905.1_ERR589661_bin.12_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_F;s__Olsenella_F profusa PRJEB51075 138595 SAMEA14084896 ERR589661_bin.12_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:47.553 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 20.0x 99.03 98.39 1.21 100 2.6 CALFGI01 2516 2582 2582 13 2 50 1 Olsenella_profusa_homd_HMT_806 GCA_937958335.1 HMT-583 ERR2764965_bin.75_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-583 Hallella dentalis ERR2764965_bin.75_CONCOCT_v1.1_MAG 259 2845263 yes 57.87 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/958/335/GCA_937958335.1_ERR2764965_bin.75_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella seregens PRJEB51075 52227 SAMEA14084163 ERR2764965_bin.75_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:31:20.023 France human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 14.0x 98.88 95.19 3.04 91.12 2.96 CALFFQ01 2098 2128 2128 4 0 25 1 Hallella_dentalis_homd_HMT_583 GCA_937959765.1 HMT-539 SRR9217400_bin.51_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-539 Filifactor alocis SRR9217400_bin.51_CONCOCT_v1.1_MAG 238 1472763 yes 35.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/959/765/GCA_937959765.1_SRR9217400_bin.51_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Filifactor;s__Filifactor alocis PRJEB51075 143361 SAMEA14086156 SRR9217400_bin.51_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:32.930 Italy human gut metagenome Illumina HiSeq 2500 European Bioinformatics Institute 11.0x 98.14 85.14 0 81.83 1.31 CALGQB01 1350 1380 1380 19 1 9 1 Filifactor_alocis_homd_HMT_539 GCA_937966185.1 HMT-718 ERR527209_bin.35_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae ERR527209_bin.35_CONCOCT_v1.1_MAG 37 2073216 yes 39.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/966/185/GCA_937966185.1_ERR527209_bin.35_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D parainfluenzae PRJEB51075 729 SAMEA14084496 ERR527209_bin.35_CONCOCT_v1.1_ Contig metaspadesv3.11.1 2023-01-04T08:31:32.663 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 33.0x 96.29 99.77 0.17 100 0.36 CALCKL01 1967 2028 2028 30 1 29 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_937974095.1 HMT-542 SRR3546782_bin.52_CONCOCT_v1.1_MAG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-542 Peptostreptococcus anaerobius SRR3546782_bin.52_CONCOCT_v1.1_MAG 62 1783490 yes 36.27 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/974/095/GCA_937974095.1_SRR3546782_bin.52_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus;s__Peptostreptococcus anaerobius PRJEB51075 1261 SAMEA14085708 SRR3546782_bin.52_CONCOCT_v1.1 Contig metaspadesv3.11.1 2023-01-04T08:32:14.320 USA human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 17.0x 99.27 99.3 0 100 0.46 CALJIT01 1608 1648 1648 29 2 8 1 Peptostreptococcus_anaerobius_homd_HMT_542 GCA_937974105.1 HMT-526 SRR9217471_bin.92_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Low) HMT-526 Hoylesella koreensis SRR9217471_bin.92_CONCOCT_v1.1_MAG 489 1970687 yes 44.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/974/105/GCA_937974105.1_SRR9217471_bin.92_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella koreensis PRJEB51075 159272 SAMEA14086166 SRR9217471_bin.92_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:33.263 Italy human gut metagenome Illumina HiSeq 2500 European Bioinformatics Institute 8.0x 81.48 2.18 80.48 2.08 CALJII01 1677 1699 1699 7 1 14 0 Hoylesella_koreensis_homd_HMT_526 GCA_937974765.1 HMT-739 ERR589649_bin.61_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-739 Arachnia propionica ERR589649_bin.61_CONCOCT_v1.1_MAG 139 3337161 yes 66.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/974/765/GCA_937974765.1_ERR589649_bin.61_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia propionica PRJEB51075 257457 SAMEA14084879 ERR589649_bin.61_CONCOCT_v1.1_ Contig spadesv3.12.0 2023-01-04T08:31:46.850 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 121.0x 94.5 0 99.99 0.66 CALJVF01 3044 3123 3123 25 3 50 1 Arachnia_propionica_homd_HMT_739 GCA_937974815.1 HMT-194 ERR589648_bin.55_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-194 Arachnia rubra ERR589648_bin.55_CONCOCT_v1.1_MAG 223 3200054 yes 64.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/974/815/GCA_937974815.1_ERR589648_bin.55_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia;s__Arachnia rubra PRJEB51075 257457 SAMEA14084877 ERR589648_bin.55_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:46.790 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 146.0x 94.15 1.75 95.81 2.04 CALJVG01 2962 3026 3026 18 1 43 2 Arachnia_rubra_homd_HMT_194 GCA_937975755.1 HMT-609 ERR589646_bin.92_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-609 Neisseria flava ERR589646_bin.92_CONCOCT_v1.1_MAG 138 2431739 yes 51.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/975/755/GCA_937975755.1_ERR589646_bin.92_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria flava PRJEB51075 237778 SAMEA14084872 ERR589646_bin.92_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:46.650 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 30.0x 99.62 0 100 0.07 CALJTW01 2145 2208 2208 16 0 46 1 Neisseria_flava_homd_HMT_609 GCA_937975845.1 HMT-674 ERR1018188_bin.3_CONCOCT_v1.1_MAG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-674 Atopobium minutum ERR1018188_bin.3_CONCOCT_v1.1_MAG 10 1629170 yes 48.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/975/845/GCA_937975845.1_ERR1018188_bin.3_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium;s__Atopobium minutum PRJEB51075 1381 SAMEA14083289 ERR1018188_bin.3_CONCOCT_v1.1_ Contig metaspadesv3.11.1 2023-01-04T08:30:52.000 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 12.0x 99.93 100 0 99.92 0.36 GCF_937975845.1 CALJSN01 1458 1510 1510 7 0 44 1 Atopobium_minutum_homd_HMT_674 GCA_937980405.1 HMT-187 SRR12395647_bin.57_CONCOCT_v1.1_MAG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-187 Peptoniphilus grossensis SRR12395647_bin.57_CONCOCT_v1.1_MAG 142 1389669 yes 34.38 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/980/405/GCA_937980405.1_SRR12395647_bin.57_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A;s__Peptoniphilus_A grossensis PRJEB51075 254354 SAMEA14085463 SRR12395647_bin.57_CONCOCT_v1. Contig metaSPAdes v3.14.1 2023-01-04T08:32:05.800 Canada human gut metagenome Illumina NovaSeq 6000 European Bioinformatics Institute 30.0x 91.61 1.05 80.92 1.02 CALJQC01 1305 1343 1343 24 0 14 0 Peptoniphilus_grossensis_homd_HMT_187 GCA_937981545.1 HMT-169 SRR8114064_bin.71_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 SRR8114064_bin.71_CONCOCT_v1.1_MAG 75 3040545 yes 68.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/981/545/GCA_937981545.1_SRR8114064_bin.71_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJEB51075 544580 SAMEA14086110 SRR8114064_bin.71_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:30.850 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 37.0x 95.19 98.78 0.47 100 0.7 GCF_937981545.1 CALJNX01 2531 2594 2594 12 0 50 1 Actinomyces_oris_clade_169_homd_HMT_169 GCA_937981545.1 HMT-169 SRR8114064_bin.71_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-169 Actinomyces oris clade-169 SRR8114064_bin.71_CONCOCT_v1.1_MAG 75 3040545 yes 68.81 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/981/545/GCA_937981545.1_SRR8114064_bin.71_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp915069725 PRJEB51075 544580 SAMEA14086110 SRR8114064_bin.71_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:30.850 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 37.0x 95.19 98.78 0.47 100 0.7 GCF_937981545.1 CALJNX01 2531 2594 2594 12 0 50 1 Actinomyces_oris_HMT_043_079_144_169_171_893 GCA_937984615.1 HMT-681 SRR7403881_bin.34_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR7403881_bin.34_CONCOCT_v1.1_MAG 54 2301243 yes 59.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/984/615/GCA_937984615.1_SRR7403881_bin.34_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB51075 316088 SAMEA14085953 SRR7403881_bin.34_CONCOCT_v1.1 Contig metaspadesv3.12.0 2023-01-04T08:32:24.000 USA human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 41.0x 99.33 0 100 0.01 GCF_937984615.1 CALJYB01 1765 1828 1828 12 5 45 1 Rothia_mucilaginosa_clade_681_homd_HMT_681 GCA_937984615.1 HMT-681 SRR7403881_bin.34_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-681 Rothia mucilaginosa clade-681 SRR7403881_bin.34_CONCOCT_v1.1_MAG 54 2301243 yes 59.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/984/615/GCA_937984615.1_SRR7403881_bin.34_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia mucilaginosa PRJEB51075 316088 SAMEA14085953 SRR7403881_bin.34_CONCOCT_v1.1 Contig metaspadesv3.12.0 2023-01-04T08:32:24.000 USA human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 41.0x 99.33 0 100 0.01 GCF_937984615.1 CALJYB01 1765 1828 1828 12 5 45 1 Rothia_mucilaginosa_HMT_147_681 GCA_937989475.1 HMT-875 SRR8114094_bin.42_CONCOCT_v1.1_MAG Phylotype Uncultivated Oral (Abundance: Medium) HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 SRR8114094_bin.42_CONCOCT_v1.1_MAG 8 985380 yes 34.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/989/475/GCA_937989475.1_SRR8114094_bin.42_CONCOCT_v1.1_MAG d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333295 PRJEB51075 77133 SAMEA14086119 SRR8114094_bin.42_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:31.143 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 27.0x 73.6 1.12 95.53 2.26 CALKRR01 1770 1809 1809 2 0 36 1 Absconditicoccaceae__G1__bacterium_HMT_875_homd_HMT_875 GCA_937989475.1 HMT-875 SRR8114094_bin.42_CONCOCT_v1.1_MAG Phylotype Uncultivated Oral (Abundance: Medium) HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 SRR8114094_bin.42_CONCOCT_v1.1_MAG 8 985380 yes 34.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/989/475/GCA_937989475.1_SRR8114094_bin.42_CONCOCT_v1.1_MAG d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345;s__HOT-345 sp013333295 PRJEB51075 77133 SAMEA14086119 SRR8114094_bin.42_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:31.143 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 27.0x 73.6 1.12 95.53 2.26 CALKRR01 1770 1809 1809 2 0 36 1 Absconditicoccaceae__G1_HMT_345_874_875 GCA_937989495.1 HMT-306 SRR8114088_bin.67_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-306 Prevotella vespertina SRR8114088_bin.67_CONCOCT_v1.1_MAG 127 2672086 yes 41.3 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/989/495/GCA_937989495.1_SRR8114088_bin.67_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella vespertina PRJEB51075 159272 SAMEA14086118 SRR8114088_bin.67_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:31.106 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 13.0x 93.57 0.42 92.86 0.83 GCF_937989495.1 CALKBG01 2179 2226 2226 10 0 36 1 Prevotella_vespertina_homd_HMT_306 GCA_937989635.1 HMT-430 SRR8114077_bin.22_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-430 Lachnoanaerobaculum sp. HMT-430 SRR8114077_bin.22_CONCOCT_v1.1_MAG 234 2997613 yes 36.29 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/989/635/GCA_937989635.1_SRR8114077_bin.22_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__Lachnoanaerobaculum sp000287675 PRJEB51075 1662275 SAMEA14086116 SRR8114077_bin.22_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:31.046 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 9.0x 97.47 1.61 95.59 2.56 CALKBH01 2824 2881 2881 17 1 38 1 Lachnoanaerobaculum_sp_HMT_430_homd_HMT_430 GCA_937989655.1 HMT-718 ERR1995237_bin.21_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-718 Haemophilus parainfluenzae ERR1995237_bin.21_CONCOCT_v1.1_MAG 15 1898815 yes 39.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/989/655/GCA_937989655.1_ERR1995237_bin.21_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D;s__Haemophilus_D sp927911595 PRJEB51075 727 SAMEA14083869 ERR1995237_bin.21_CONCOCT_v1.1 Contig spadesv3.13.0 2023-01-04T08:31:10.370 Denmark human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 18.0x 84.58 99.89 0.08 100 0 CALKBS01 1801 1867 1867 25 3 37 1 Haemophilus_parainfluenzae_homd_HMT_718 GCA_937990535.1 HMT-096 SRR8114010_bin.97_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-096 Lachnospiraceae [G2] bacterium HMT-096 SRR8114010_bin.97_CONCOCT_v1.1_MAG 61 1903605 yes 39.94 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/990/535/GCA_937990535.1_SRR8114010_bin.97_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__F0428;s__F0428 sp003043955 PRJEB51075 1662275 SAMEA14086079 SRR8114010_bin.97_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:29.483 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 15.0x 96.52 0 98.56 0.17 CALKRH01 1755 1804 1804 13 0 35 1 Lachnospiraceae__G2__bacterium_HMT_096_homd_HMT_096 GCA_937990675.1 HMT-795 ERR589682_bin.108_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-795 Hoylesella shahii ERR589682_bin.108_CONCOCT_v1.1_MAG 82 3194357 yes 44.51 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/990/675/GCA_937990675.1_ERR589682_bin.108_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella shahii PRJEB51075 228603 SAMEA14084918 ERR589682_bin.108_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:31:48.860 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 13.0x 98.1 99.49 0 99.36 0.17 GCF_937990675.1 CALKQY01 2514 2556 2556 7 2 32 1 Hoylesella_shahii_homd_HMT_795 GCA_937990705.1 HMT-291 ERR589687_bin.47_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-291 Prevotella denticola ERR589687_bin.47_CONCOCT_v1.1_MAG 113 2800382 yes 50.9 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/990/705/GCA_937990705.1_ERR589687_bin.47_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella denticola PRJEB51075 28129 SAMEA14084928 ERR589687_bin.47_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:49.396 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 16.0x 98.07 98.85 0 96.01 0.7 GCF_937990705.1 CALKRA01 2241 2272 2272 7 1 23 0 Prevotella_denticola_homd_HMT_291 GCA_937990745.1 HMT-757 ERR589679_bin.98_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-757 Gemella sanguinis ERR589679_bin.98_CONCOCT_v1.1_MAG 197 1557782 yes 29.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/990/745/GCA_937990745.1_ERR589679_bin.98_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella;s__Gemella sanguinis PRJEB51075 84135 SAMEA14084916 ERR589679_bin.98_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:48.490 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 19.0x 96.11 91.85 0.77 94.07 2.15 CALKQV01 1461 1503 1503 22 1 18 1 Gemella_sanguinis_homd_HMT_757 GCA_937991325.1 HMT-370 ERR688618_bin.93_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Scarce) HMT-370 Fusobacterium sp. HMT-370 ERR688618_bin.93_CONCOCT_v1.1_MAG 81 2048915 yes 27.68 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/991/325/GCA_937991325.1_ERR688618_bin.93_CONCOCT_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium sp000235465 PRJEB51075 159267 SAMEA14085086 ERR688618_bin.93_CONCOCT_v1.1_ Contig metaspadesv3.11.1 2023-01-04T08:31:54.626 Austria human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 19.0x 98.88 0 99.87 0.8 GCF_937991325.1 CALKQD01 1896 1939 1939 19 1 22 1 Fusobacterium_sp_HMT_370_homd_HMT_370 GCA_937997015.1 HMT-185 SRR3901706_bin.73_CONCOCT_v1.1_MAG Named Cultivated Environmental -Soil/Water (Abundance: Scarce) HMT-185 Microbacterium ginsengisoli SRR3901706_bin.73_CONCOCT_v1.1_MAG 41 2801048 yes 70.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/997/015/GCA_937997015.1_SRR3901706_bin.73_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium;s__Microbacterium ginsengisoli PRJEB51072 191216 SAMEA14081957 SRR3901706_bin.73_CONCOCT_v1.1 Contig metaspadesv3.12.0 2023-01-04T08:30:29.850 South Africa metagenome Illumina HiSeq 2500 European Bioinformatics Institute 52.0x 98.48 0 100 0.08 GCF_937997015.1 CALKUD01 2639 2698 2698 7 2 49 1 Microbacterium_ginsengisoli_homd_HMT_185 GCA_938003205.1 HMT-409 SRR2037089_bin.59_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-409 Lautropia dentalis SRR2037089_bin.59_CONCOCT_v1.1_MAG 254 3655831 yes 65.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/003/205/GCA_938003205.1_SRR2037089_bin.59_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__Lautropia dentalis PRJEB51075 200449 SAMEA14085598 SRR2037089_bin.59_CONCOCT_v1.1 Contig SPAdes genome assembler v3.11.1 2023-01-04T08:32:10.333 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 23.0x 95.99 1.67 96.94 0.41 CALKZI01 2928 2986 2986 15 0 42 1 Lautropia_dentalis_homd_HMT_409 GCA_938009395.1 HMT-524 SRR3546782_bin.17_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-524 Veillonella atypica SRR3546782_bin.17_CONCOCT_v1.1_MAG 10 1989158 yes 38.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/009/395/GCA_938009395.1_SRR3546782_bin.17_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella atypica PRJEB51075 39777 SAMEA14085699 SRR3546782_bin.17_CONCOCT_v1.1 Contig metaspadesv3.11.1 2023-01-04T08:32:14.036 USA human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 134.0x 97.12 100 0 100 0.07 GCF_938009395.1 CALLHQ01 1804 1861 1861 20 0 36 1 Veillonella_atypica_homd_HMT_524 GCA_938010375.1 HMT-665 ERR589471_bin.58_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-665 Hoylesella marshii ERR589471_bin.58_CONCOCT_v1.1_MAG 120 1975953 yes 47.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/010/375/GCA_938010375.1_ERR589471_bin.58_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella marshii PRJEB51075 189722 SAMEA14084671 ERR589471_bin.58_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:38.976 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 12.0x 98.56 68.28 0 85.64 0.11 CALLVR01 1664 1712 1712 22 1 24 1 Hoylesella_marshii_homd_HMT_665 GCA_938010395.1 HMT-666 ERR589472_bin.16_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-666 Corynebacterium matruchotii ERR589472_bin.16_CONCOCT_v1.1_MAG 30 2878501 yes 57.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/010/395/GCA_938010395.1_ERR589472_bin.16_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium matruchotii PRJEB51075 571915 SAMEA14084674 ERR589472_bin.16_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:39.140 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 24.0x 83.4 99.89 0 100 0.21 CALLVT01 2595 2647 2647 8 0 43 1 Corynebacterium_matruchotii_homd_HMT_666 GCA_938011375.1 HMT-212 ERR589371_bin.123_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-212 Pseudoleptotrichia sp. HMT-212 ERR589371_bin.123_CONCOCT_v1.1_MAG 121 2345923 yes 31.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/011/375/GCA_938011375.1_ERR589371_bin.123_CONCOCT_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia_A;s__Leptotrichia_A sp001274535 PRJEB51075 159271 SAMEA14084557 ERR589371_bin.123_CONCOCT_v1.1 Contig spadesv3.11.1 2023-01-04T08:31:35.096 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 23.0x 98.88 3.37 97.89 0.73 CALLUC01 2220 2255 2255 15 1 18 1 Pseudoleptotrichia_sp_HMT_212_homd_HMT_212 GCA_938011465.1 HMT-317 ERR589365_bin.88_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: High) HMT-317 Hoylesella sp. HMT-317 ERR589365_bin.88_CONCOCT_v1.1_MAG 219 3680910 yes 47.34 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/011/465/GCA_938011465.1_ERR589365_bin.88_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella conceptionensis PRJEB51075 159272 SAMEA14084548 ERR589365_bin.88_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:34.710 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 11.0x 99.62 0.42 99.81 0.16 CALLTZ01 2934 2976 2976 7 2 32 1 Hoylesella_sp_HMT_317_homd_HMT_317 GCA_938011615.1 HMT-161 ERR2198631_bin.113_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-161 Veillonella parvula ERR2198631_bin.113_CONCOCT_v1.1_MAG 25 2165101 yes 38.57 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/011/615/GCA_938011615.1_ERR2198631_bin.113_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella parvula_E PRJEB51075 29466 SAMEA14083970 ERR2198631_bin.113_CONCOCT_v1. Contig metaSPAdes v3.12.0 2023-01-04T08:31:13.590 USA human gut metagenome Illumina Genome Analyzer IIx European Bioinformatics Institute 130.0x 96.76 100 0 100 0.07 GCF_938011615.1 CALLTU01 1981 2046 2046 22 1 41 1 Veillonella_parvula_homd_HMT_161 GCA_938014155.1 HMT-467 SRR8114013_bin.50_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) "HMT-467 Peptostreptococcaceae [G1 ""Eubacterium""] sulci SRR8114013_bin.50_CONCOCT_v1.1_MAG" 24 1790637 yes 39.7 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/014/155/GCA_938014155.1_SRR8114013_bin.50_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Eubacterium_B;s__Eubacterium_B sulci PRJEB51075 143393 SAMEA14086080 SRR8114013_bin.50_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:29.526 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 18.0x 100 0.71 99.76 0.14 CALLSA01 1652 1708 1708 23 0 32 1 Anaerovoracaceae__G1__sulci_homd_HMT_467 GCA_938014195.1 HMT-298 SRR8114048_bin.2_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-298 Prevotella histicola SRR8114048_bin.2_CONCOCT_v1.1_MAG 114 2952585 yes 41.03 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/014/195/GCA_938014195.1_SRR8114048_bin.2_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella histicola PRJEB51075 470565 SAMEA14086097 SRR8114048_bin.2_CONCOCT_v1.1_ Contig metaSPAdes v3.14.1 2023-01-04T08:32:30.370 Luxembourg human gut metagenome NextSeq 500 European Bioinformatics Institute 18.0x 97.77 98.44 2.03 98.09 1.63 GCF_938014195.1 CALLSE01 2385 2432 2432 8 1 37 1 Prevotella_histicola_homd_HMT_298 GCA_938014255.1 HMT-860 ERR414468_bin.30_CONCOCT_v1.1_MAG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-860 Fusobacterium gonidiaformans ERR414468_bin.30_CONCOCT_v1.1_MAG 89 1788515 yes 32.67 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/014/255/GCA_938014255.1_ERR414468_bin.30_CONCOCT_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C gonidiaformans PRJEB51075 849 SAMEA14084397 ERR414468_bin.30_CONCOCT_v1.1_ Contig spades_v3.11.1 2023-01-04T08:31:28.270 Spain human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 22.0x 98.76 100 0 99.99 0.26 CALHDE01 1752 1790 1790 14 3 20 1 Fusobacterium_gonidiaformans_homd_HMT_860 GCA_938014305.1 HMT-866 SRR8114062_bin.40_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-866 Actinomyces graevenitzii SRR8114062_bin.40_CONCOCT_v1.1_MAG 24 2106840 yes 57.73 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/014/305/GCA_938014305.1_SRR8114062_bin.40_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces graevenitzii PRJEB51075 55565 SAMEA14086106 SRR8114062_bin.40_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:30.683 Luxembourg human gut metagenome Illumina HiSeq 4000 European Bioinformatics Institute 16.0x 100 0.47 99.84 1.17 CALLSI01 1768 1828 1828 9 2 48 1 Actinomyces_graevenitzii_homd_HMT_866 GCA_938015825.1 HMT-313 ERR589495_bin.72_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-313 Prevotella jejuni ERR589495_bin.72_CONCOCT_v1.1_MAG 236 3927966 yes 41.31 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/015/825/GCA_938015825.1_ERR589495_bin.72_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella jejuni PRJEB51075 1177574 SAMEA14084717 ERR589495_bin.72_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:40.740 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 25.0x 96.56 98.92 1.81 99.85 2.93 GCF_938015825.1 CALLVZ01 3228 3283 3283 9 3 42 1 Prevotella_jejuni_homd_HMT_313 GCA_938016215.1 HMT-560 ERR1430533_bin.121_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Low) HMT-560 Segatella buccae ERR1430533_bin.121_CONCOCT_v1.1_MAG 24 3206583 yes 51.21 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/016/215/GCA_938016215.1_ERR1430533_bin.121_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella buccae PRJEB51075 28126 SAMEA14083557 ERR1430533_bin.121_CONCOCT_v1. Contig metaspades_v3.13.0 2023-01-04T08:31:00.383 China human gut metagenome Illumina HiSeq 2500 European Bioinformatics Institute 218.0x 98.51 99.32 0 99.98 0 GCF_938016215.1 CALLWX01 2594 2650 2650 7 0 48 1 Segatella_buccae_homd_HMT_560 GCA_938017755.1 HMT-038 ERR589728_bin.0_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-038 Olsenella uli ERR589728_bin.0_CONCOCT_v1.1_MAG 53 2281346 yes 64.02 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/017/755/GCA_938017755.1_ERR589728_bin.0_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella;s__Olsenella uli PRJEB51075 133926 SAMEA14084977 ERR589728_bin.0_CONCOCT_v1.1_M Contig spadesv3.11.1 2023-01-04T08:31:50.930 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 16.0x 99.06 99.19 0.81 99.11 0.73 GCF_938017755.1 CALIJR01 1983 2043 2043 13 0 46 1 Olsenella_uli_homd_HMT_038 GCA_938017805.1 HMT-160 ERR589558_bin.82_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-160 Veillonella dispar ERR589558_bin.82_CONCOCT_v1.1_MAG 295 1921253 yes 39.04 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/017/805/GCA_938017805.1_ERR589558_bin.82_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella dispar PRJEB51075 159268 SAMEA14084751 ERR589558_bin.82_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:41.960 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 7.0x 96.51 2.91 98.17 4.17 GCF_938017805.1 CALIIO01 1703 1747 1747 19 1 23 1 Veillonella_dispar_homd_HMT_160 GCA_938018165.1 HMT-329 ERR589515_bin.6_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-329 Capnocytophaga leadbetteri ERR589515_bin.6_CONCOCT_v1.1_MAG 57 2648041 yes 39.83 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/018/165/GCA_938018165.1_ERR589515_bin.6_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga leadbetteri_A PRJEB51075 327575 SAMEA14084726 ERR589515_bin.6_CONCOCT_v1.1_M Contig metaspadesv3.10.0 2023-01-04T08:31:41.060 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 22.0x 95.72 100 0 99.98 0.17 GCF_938018165.1 CALIIH01 2420 2468 2468 6 0 41 1 Capnocytophaga_leadbetteri_homd_HMT_329 GCA_938018175.1 HMT-587 ERR589478_bin.51_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-587 Rothia dentocariosa ERR589478_bin.51_CONCOCT_v1.1_MAG 41 2459680 yes 53.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/018/175/GCA_938018175.1_ERR589478_bin.51_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa PRJEB51075 2047 SAMEA14084695 ERR589478_bin.51_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:39.916 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 14.0x 96.54 99.34 0 100 0.13 GCF_938018175.1 CALIIF01 2101 2157 2157 12 3 40 1 Rothia_dentocariosa_homd_HMT_587 GCA_938018195.1 HMT-278 ERR589475_bin.46_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-278 Porphyromonas sp. HMT-278 ERR589475_bin.46_CONCOCT_v1.1_MAG 58 2254008 yes 55.47 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/018/195/GCA_938018195.1_ERR589475_bin.46_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas sp000467855 PRJEB51075 159274 SAMEA14084687 ERR589475_bin.46_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:39.626 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 12.0x 98.87 0.16 99.88 0.06 GCF_938018195.1 CALIIE01 1784 1840 1840 7 2 46 1 Porphyromonas_sp_HMT_278_homd_HMT_278 GCA_938020355.1 HMT-685 ERR589471_bin.86_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Low) HMT-685 Prevotella multiformis ERR589471_bin.86_CONCOCT_v1.1_MAG 159 3357401 yes 51.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/020/355/GCA_938020355.1_ERR589471_bin.86_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella multiformis PRJEB51075 282402 SAMEA14084673 ERR589471_bin.86_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:39.083 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 23.0x 98.16 98.31 2.45 99.66 3.52 CALIID01 2814 2859 2859 17 0 27 1 Prevotella_multiformis_homd_HMT_685 GCA_938020375.1 HMT-123 ERR414475_bin.6_CONCOCT_v1.1_MAG Named NVP** Uncultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-123 Anaeroglobus massiliensis ERR414475_bin.6_CONCOCT_v1.1_MAG 21 1791590 yes 49.93 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/020/375/GCA_938020375.1_ERR414475_bin.6_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus massiliensis PRJEB51075 1852379 SAMEA14084407 ERR414475_bin.6_CONCOCT_v1.1_M Contig spades_v3.11.1 2023-01-04T08:31:28.703 Spain human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 25.0x 98.66 99.4 0 87.6 0.03 CALHDF01 1709 1845 1845 84 2 49 1 Anaeroglobus_massiliensis_homd_HMT_123 GCA_938021125.1 HMT-563 ERR589367_bin.14_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-563 Leptotrichia buccalis ERR589367_bin.14_CONCOCT_v1.1_MAG 489 1989509 yes 30.78 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/125/GCA_938021125.1_ERR589367_bin.14_CONCOCT_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;s__Leptotrichia buccalis PRJEB51075 40542 SAMEA14084553 ERR589367_bin.14_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:34.900 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 7.0x 96.99 85.73 4.17 83.3 5.73 CALIHM01 1806 1824 1824 12 0 5 1 Leptotrichia_buccalis_homd_HMT_563 GCA_938021135.1 HMT-473 ERR589357_bin.83_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: High) HMT-473 Alloprevotella sp. HMT-473 ERR589357_bin.83_CONCOCT_v1.1_MAG 56 2642809 yes 46.15 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/135/GCA_938021135.1_ERR589357_bin.83_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella;s__Alloprevotella sp000318095 PRJEB51075 1283315 SAMEA14084530 ERR589357_bin.83_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:33.960 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 15.0x 96.5 1.47 96.86 0.34 CALIHJ01 2080 2144 2144 6 0 57 1 Alloprevotella_sp_HMT_473_homd_HMT_473 GCA_938021145.1 HMT-736 ERR589356_bin.6_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-736 Dialister pneumosintes ERR589356_bin.6_CONCOCT_v1.1_MAG 23 1267065 yes 34.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/145/GCA_938021145.1_ERR589356_bin.6_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Allisonella;s__Allisonella pneumosinta PRJEB51075 39950 SAMEA14084528 ERR589356_bin.6_CONCOCT_v1.1_M Contig metaspadesv3.10.0 2023-01-04T08:31:33.886 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 18.0x 95.48 0.63 99.77 0.51 CALIHI01 1213 1271 1271 17 2 38 1 Dialister_pneumosintes_homd_HMT_736 GCA_938021175.1 HMT-762 ERR589365_bin.97_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-762 Aggregatibacter segnis ERR589365_bin.97_CONCOCT_v1.1_MAG 44 2087800 yes 42.58 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/175/GCA_938021175.1_ERR589365_bin.97_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter segnis_B PRJEB51075 739 SAMEA14084550 ERR589365_bin.97_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:34.780 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 16.0x 95.23 99.66 0.59 100 0.12 CALIHN01 1949 2087 2087 102 1 35 0 Aggregatibacter_segnis_homd_HMT_762 GCA_938021195.1 HMT-283 ERR589473_bin.15_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-283 Porphyromonas catoniae ERR589473_bin.15_CONCOCT_v1.1_MAG 10 1908764 yes 50.99 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/195/GCA_938021195.1_ERR589473_bin.15_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas catoniae PRJEB51075 41976 SAMEA14084678 ERR589473_bin.15_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:39.296 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 58.0x 96.22 95.05 0 99.78 0.01 GCF_938021195.1 CALIIX01 1496 1551 1551 6 2 46 1 Porphyromonas_catoniae_homd_HMT_283 GCA_938021905.1 HMT-945 ERR1474568_bin.54_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-945 Haemophilus parahaemolyticus ERR1474568_bin.54_CONCOCT_v1.1_MAG 87 2053598 yes 40.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/905/GCA_938021905.1_ERR1474568_bin.54_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;s__Haemophilus_A parahaemolyticus_B PRJEB51075 735 SAMEA14083590 ERR1474568_bin.54_CONCOCT_v1.1 Contig SPAdes genome assembler v3.11.1 2023-01-04T08:31:01.320 Philippines human gut metagenome Illumina HiSeq 2500 European Bioinformatics Institute 22.0x 94.96 93.18 0.83 93.99 1.85 GCF_938021905.1 CALIFA01 1994 2045 2045 23 2 26 0 Haemophilus_parahaemolyticus_homd_HMT_945 GCA_938022445.1 HMT-577 ERR589371_bin.96_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-577 Eikenella corrodens ERR589371_bin.96_CONCOCT_v1.1_MAG 157 2148105 yes 55.77 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/022/445/GCA_938022445.1_ERR589371_bin.96_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella;s__Eikenella corrodens PRJEB51075 539 SAMEA14084560 ERR589371_bin.96_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:35.230 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 14.0x 95.94 90.71 4.36 93.86 4.88 CALIHO01 2109 2164 2164 14 2 38 1 Eikenella_corrodens_homd_HMT_577 GCA_938023115.1 HMT-690 ERR414493_bin.34_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-690 Fusobacterium necrophorum ERR414493_bin.34_CONCOCT_v1.1_MAG 41 1998281 yes 35.05 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/023/115/GCA_938023115.1_ERR414493_bin.34_CONCOCT_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;s__Fusobacterium_C necrophorum PRJEB51075 859 SAMEA14084413 ERR414493_bin.34_CONCOCT_v1.1_ Contig spades_v3.11.1 2023-01-04T08:31:28.926 Spain human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 22.0x 99.81 97.75 0 99.8 0.02 CALHDK01 1893 1938 1938 16 2 26 1 Fusobacterium_necrophorum_homd_HMT_690 GCA_938023715.1 HMT-794 ERR1430407_bin.68_CONCOCT_v1.1_MAG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Scarce) HMT-794 Hallella multisaccharivorax ERR1430407_bin.68_CONCOCT_v1.1_MAG 84 3035318 yes 48.39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/023/715/GCA_938023715.1_ERR1430407_bin.68_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella multisaccharivorax PRJEB51075 159272 SAMEA14083460 ERR1430407_bin.68_CONCOCT_v1.1 Contig metaspades_v3.13.0 2023-01-04T08:30:57.456 China human gut metagenome Illumina HiSeq 2500 European Bioinformatics Institute 49.0x 98.65 0.23 99.84 0.33 CALJCS01 2578 2640 2640 14 0 47 1 Hallella_multisaccharivorax_homd_HMT_794 GCA_938028205.1 HMT-534 ERR589642_bin.94_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-534 Granulicatella adiacens ERR589642_bin.94_CONCOCT_v1.1_MAG 91 1798844 yes 37.79 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/028/205/GCA_938028205.1_ERR589642_bin.94_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella;s__Granulicatella adiacens PRJEB51075 316089 SAMEA14084861 ERR589642_bin.94_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:46.256 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 9.0x 97.44 0.38 89.99 1.33 GCF_938028205.1 CALJAJ01 1716 1761 1761 25 1 18 1 Granulicatella_adiacens_homd_HMT_534 GCA_938028215.1 HMT-887 ERR589609_bin.2_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-887 Veillonella denticariosi ERR589609_bin.2_CONCOCT_v1.1_MAG 109 1950016 yes 42.5 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/028/215/GCA_938028215.1_ERR589609_bin.2_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella denticariosi PRJEB51075 419208 SAMEA14084793 ERR589609_bin.2_CONCOCT_v1.1_M Contig spadesv3.11.1 2023-01-04T08:31:43.556 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 18.0x 97.09 92.01 1.2 89.35 1.45 GCF_938028215.1 CALJAD01 1777 1803 1803 15 0 11 0 Veillonella_denticariosi_homd_HMT_887 GCA_938028225.1 HMT-122 ERR589623_bin.60_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-122 Megasphaera micronuciformis ERR589623_bin.60_CONCOCT_v1.1_MAG 22 1691667 yes 45.44 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/028/225/GCA_938028225.1_ERR589623_bin.60_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Anaeroglobus;s__Anaeroglobus micronuciformis PRJEB51075 187326 SAMEA14084815 ERR589623_bin.60_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:44.486 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 49.0x 100 0 99.37 0.17 CALJAC01 1600 1678 1678 28 0 49 1 Megasphaera_micronuciformis_homd_HMT_122 GCA_938028245.1 HMT-419 ERR589636_bin.74_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-419 Stomatobaculum longum ERR589636_bin.74_CONCOCT_v1.1_MAG 72 2312090 yes 54.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/028/245/GCA_938028245.1_ERR589636_bin.74_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Moryella;s__Moryella longum PRJEB51075 796942 SAMEA14084843 ERR589636_bin.74_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:45.600 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 17.0x 96.03 98.73 0.69 99.49 1.39 GCF_938028245.1 CALJAI01 2116 2170 2170 16 0 37 1 Stomatobaculum_longum_homd_HMT_419 GCA_938028575.1 HMT-693 ERR589362_bin.1_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-693 Prevotella nigrescens ERR589362_bin.1_CONCOCT_v1.1_MAG 43 2453895 yes 42.33 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/028/575/GCA_938028575.1_ERR589362_bin.1_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella nigrescens PRJEB51075 28133 SAMEA14084536 ERR589362_bin.1_CONCOCT_v1.1_M Contig metaspadesv3.10.0 2023-01-04T08:31:34.206 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 24.0x 98.35 99.31 0.17 99.67 0.06 GCF_938028575.1 CALIZO01 2083 2129 2129 7 1 37 1 Prevotella_nigrescens_homd_HMT_693 GCA_938029425.1 HMT-014 ERR589377_bin.87_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-014 Neisseria oralis ERR589377_bin.87_CONCOCT_v1.1_MAG 85 2409296 yes 52.86 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/029/425/GCA_938029425.1_ERR589377_bin.87_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;s__Neisseria oralis PRJEB51075 237778 SAMEA14084583 ERR589377_bin.87_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:36.020 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 11.0x 99.18 2.03 100 2.07 GCF_938029425.1 CALHFZ01 2206 2310 2310 59 0 44 1 Neisseria_oralis_homd_HMT_014 GCA_938029445.1 HMT-603 ERR589371_bin.95_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-603 Bulleidia extructa ERR589371_bin.95_CONCOCT_v1.1_MAG 289 1157370 yes 36.43 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/029/445/GCA_938029445.1_ERR589371_bin.95_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia;s__Bulleidia extructa PRJEB51075 118748 SAMEA14084559 ERR589371_bin.95_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:35.176 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 6.0x 99.08 85.4 0.61 84.06 3.16 CALHFY01 1092 1135 1135 14 0 28 1 Bulleidia_extructa_homd_HMT_603 GCA_938029845.1 HMT-471 ERR589600_bin.49_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-471 Capnocytophaga sp. HMT-471 ERR589600_bin.49_CONCOCT_v1.1_MAG 190 3000345 yes 0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/029/845/GCA_938029845.1_ERR589600_bin.49_CONCOCT_v1.1_MAG/ d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sp938029845 PRJEB51075 159273 SAMEA14084774 ERR589600_bin.49_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:42.770 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 12 97.5 2.3 GCF_938029845.1 CALHGG01 2867 8 2 27 1 Capnocytophaga_sp_HMT_471_homd_HMT_471 GCA_938030085.1 HMT-111 ERR589642_bin.0_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-111 Parvimonas micra ERR589642_bin.0_CONCOCT_v1.1_MAG 41 1569637 yes 28.25 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/030/085/GCA_938030085.1_ERR589642_bin.0_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas;s__Parvimonas micra PRJEB51075 33033 SAMEA14084855 ERR589642_bin.0_CONCOCT_v1.1_M Contig spadesv3.11.1 2023-01-04T08:31:46.030 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 18.0x 97.68 98.48 0.61 98.95 0.65 GCF_938030085.1 CALHGL01 1459 1514 1514 28 2 24 1 Parvimonas_micra_homd_HMT_111 GCA_938030135.1 HMT-595 ERR589646_bin.22_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-595 Corynebacterium durum ERR589646_bin.22_CONCOCT_v1.1_MAG 28 2821757 yes 57.01 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/030/135/GCA_938030135.1_ERR589646_bin.22_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;s__Corynebacterium durum PRJEB51075 556548 SAMEA14084871 ERR589646_bin.22_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:46.610 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 24.0x 82.51 99.55 0.45 99.99 0.09 CALHGN01 2621 2687 2687 17 0 48 1 Corynebacterium_durum_homd_HMT_595 GCA_938030635.1 HMT-582 ERR589374_bin.71_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-582 Kingella denitrificans ERR589374_bin.71_CONCOCT_v1.1_MAG 153 1715556 yes 55.17 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/030/635/GCA_938030635.1_ERR589374_bin.71_CONCOCT_v1.1_MAG d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_A;s__Kingella_A denitrificans PRJEB51075 502 SAMEA14084574 ERR589374_bin.71_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:35.713 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 15.0x 96.57 89.3 0.45 86.78 0.78 CALHHW01 1732 1775 1775 5 1 36 1 Kingella_denitrificans_homd_HMT_582 GCA_938030695.1 HMT-897 ERR589373_bin.89_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Low) HMT-897 Actinomyces sp. HMT-897 ERR589373_bin.89_CONCOCT_v1.1_MAG 254 3164958 yes 71.64 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/030/695/GCA_938030695.1_ERR589373_bin.89_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces sp002999235 PRJEB51075 249061 SAMEA14084570 ERR589373_bin.89_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:35.583 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 32.0x 93.63 0.51 93.5 1.1 GCF_938030695.1 CALHHV01 2454 2505 2505 11 0 40 0 Actinomyces_sp_HMT_897_homd_HMT_897 GCA_938030775.1 HMT-200 ERR589450_bin.81_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-200 Fusobacterium vincentii ERR589450_bin.81_CONCOCT_v1.1_MAG 207 2082084 yes 27.06 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/030/775/GCA_938030775.1_ERR589450_bin.81_CONCOCT_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium vincentii PRJEB51075 851 SAMEA14084638 ERR589450_bin.81_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:37.950 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 9.0x 92.56 96.63 1.12 97.79 0.43 CALHIH01 1910 1953 1953 18 2 22 1 Fusobacterium_vincentii_homd_HMT_200 GCA_938031325.1 HMT-078 ERR589381_bin.12_CONCOCT_v1.1_MAG Unnamed Cultivated Oral (Abundance: Medium) HMT-078 Oribacterium sp. HMT-078 ERR589381_bin.12_CONCOCT_v1.1_MAG 59 2649330 yes 54.97 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/031/325/GCA_938031325.1_ERR589381_bin.12_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;s__Oribacterium sp000160135 PRJEB51075 462198 SAMEA14084591 ERR589381_bin.12_CONCOCT_v1.1_ Contig metaspadesv3.10.0 2023-01-04T08:31:36.316 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 24.0x 98.09 0.21 97.73 0.6 CALHHZ01 2311 2413 2413 55 0 46 1 Oribacterium_sp_HMT_078_homd_HMT_078 GCA_938034265.1 HMT-547 ERR1018211_bin.35_CONCOCT_v1.1_MAG Named Cultivated Human-Associated, Primary Site Uncertain (Abundance: Low) HMT-547 Porphyromonas asaccharolytica ERR1018211_bin.35_CONCOCT_v1.1_MAG 120 2193345 yes 52.36 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/034/265/GCA_938034265.1_ERR1018211_bin.35_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas asaccharolytica PRJEB51075 28123 SAMEA14083293 ERR1018211_bin.35_CONCOCT_v1.1 Contig metaspadesv3.11.1 2023-01-04T08:30:52.143 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 21.0x 98.09 98.98 0.31 99.93 0.04 GCF_938034265.1 CALHKS01 1723 1783 1783 15 2 42 1 Porphyromonas_asaccharolytica_homd_HMT_547 GCA_938034465.1 HMT-469 ERR2764840_bin.11_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-469 Prevotella melaninogenica ERR2764840_bin.11_CONCOCT_v1.1_MAG 76 3142635 yes 40.61 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/034/465/GCA_938034465.1_ERR2764840_bin.11_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;s__Prevotella melaninogenica PRJEB51075 28132 SAMEA14084157 ERR2764840_bin.11_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:31:19.866 Germany human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 34.0x 96.84 99.32 0.08 99.99 0.19 GCF_938034465.1 CALHLH01 2489 2543 2543 8 0 45 1 Prevotella_melaninogenica_homd_HMT_469 GCA_938034675.1 HMT-191 ERR589663_bin.92_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-191 Propionibacterium acidifaciens ERR589663_bin.92_CONCOCT_v1.1_MAG 121 2820612 yes 70.88 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/034/675/GCA_938034675.1_ERR589663_bin.92_CONCOCT_v1.1_MAG d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionibacterium;s__Propionibacterium acidifaciens PRJEB51075 556499 SAMEA14084901 ERR589663_bin.92_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:47.796 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 178.0x 99.16 98.46 0 99.65 1.48 GCF_938034675.1 CALHML01 2387 2461 2461 22 4 47 1 Propionibacterium_acidifaciens_homd_HMT_191 GCA_938034995.1 HMT-613 SRR9217414_bin.59_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-613 Tannerella forsythia SRR9217414_bin.59_CONCOCT_v1.1_MAG 106 3139861 yes 47.32 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/034/995/GCA_938034995.1_SRR9217414_bin.59_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella forsythia PRJEB51075 28112 SAMEA14086162 SRR9217414_bin.59_CONCOCT_v1.1 Contig metaSPAdes v3.14.1 2023-01-04T08:32:33.113 Italy human gut metagenome Illumina HiSeq 2500 European Bioinformatics Institute 47.0x 98.75 98.9 0 99.61 0.03 GCF_938034995.1 CALHNL01 2631 2691 2691 22 0 37 1 Tannerella_forsythia_homd_HMT_613 GCA_938035375.1 HMT-420 ERR589708_bin.56_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: High) HMT-420 Fusobacterium animalis ERR589708_bin.56_CONCOCT_v1.1_MAG 292 2386757 yes 26.76 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/035/375/GCA_938035375.1_ERR589708_bin.56_CONCOCT_v1.1_MAG d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium animalis PRJEB51075 851 SAMEA14084952 ERR589708_bin.56_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:50.143 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 15.0x 91.92 97.73 1.7 100 2.25 CALHMO01 2166 2210 2210 19 3 20 2 Fusobacterium_animalis_homd_HMT_420 GCA_938036205.1 HMT-673 ERR589655_bin.98_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Scarce) HMT-673 Hornefia minuta ERR589655_bin.98_CONCOCT_v1.1_MAG 52 1801930 yes 45.98 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/036/205/GCA_938036205.1_ERR589655_bin.98_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Hornefia;s__Hornefia minuta PRJEB51075 76124 SAMEA14084885 ERR589655_bin.98_CONCOCT_v1.1_ Contig spadesv3.11.1 2023-01-04T08:31:47.143 China human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 16.0x 96.81 0.92 92.18 0.42 CALHOY01 1529 1587 1587 18 2 37 1 Hornefia_minuta_homd_HMT_673 GCA_938036365.1 HMT-124 ERR414475_bin.24_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Low) HMT-124 Selenomonas artemidis ERR414475_bin.24_CONCOCT_v1.1_MAG 115 2242099 yes 57.13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/036/365/GCA_938036365.1_ERR414475_bin.24_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;s__Centipeda artemidis PRJEB51075 159275 SAMEA14084405 ERR414475_bin.24_CONCOCT_v1.1_ Contig spades_v3.11.1 2023-01-04T08:31:28.640 Spain human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 10.0x 97.97 1.15 99.14 2.6 GCF_938036365.1 CALHPQ01 2071 2122 2122 17 3 31 0 Selenomonas_artemidis_homd_HMT_124 GCA_938036385.1 HMT-118 ERR414471_bin.73_CONCOCT_v1.1_MAG Named Cultivated Oral (Abundance: Medium) HMT-118 Dialister invisus ERR414471_bin.73_CONCOCT_v1.1_MAG 37 1920595 yes 44.49 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/036/385/GCA_938036385.1_ERR414471_bin.73_CONCOCT_v1.1_MAG d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Dialisteraceae;g__Dialister;s__Dialister invisus PRJEB51075 278064 SAMEA14084404 ERR414471_bin.73_CONCOCT_v1.1_ Contig spades_v3.11.1 2023-01-04T08:31:28.616 Spain human gut metagenome Illumina HiSeq 2000 European Bioinformatics Institute 92.0x 97.47 0 99.88 0.22 GCF_938036385.1 CALHPR01 1837 1925 1925 40 0 47 1 Dialister_invisus_homd_HMT_118 GCA_938036855.1 HMT-332 ERR589615_bin.13_CONCOCT_v1.1_MAG Named NVP Cultivated Oral (Abundance: Medium) HMT-332 Capnocytophaga bilenii ERR589615_bin.13_CONCOCT_v1.1_MAG 223 2405320 yes 39.22 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/036/855/GCA_938036855.1_ERR589615_bin.13_CONCOCT_v1.1_MAG d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga bilenii PRJEB51075 159273 SAMEA14084802 ER