Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_000027045.1_00047	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	EXACTP	260	260	100.00	100.00	260	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_000027045.1_00048	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	EXACTP	243	243	100.00	100.00	243	WP_001072201.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF012222.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)
GCA_000027045.1_00063	merT	mercuric transport protein MerT	plus	STRESS	METAL	MERCURY	MERCURY	EXACTP	128	128	100.00	100.00	128	ADA79992.1	mercuric transport protein MerT	NA	NA
GCA_000027045.1_00064	merA	mercury(II) reductase	plus	STRESS	METAL	MERCURY	MERCURY	EXACTP	547	547	100.00	100.00	547	AAA98245.1	mercury(II) reductase	TIGR02053.1	mercury(II) reductase
GCA_000027045.1_00065	merB	organomercurial lyase MerB	plus	STRESS	METAL	MERCURY	ORGANOMERCURY	EXACTP	216	216	100.00	100.00	216	BAB47641.1	organomercurial lyase MerB	NF033555.1	organomercurial lyase MerB
GCA_000027045.1_00071	tet(K)	tetracycline efflux MFS transporter Tet(K)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	EXACTP	459	459	100.00	100.00	459	WP_000492283.1	tetracycline efflux MFS transporter Tet(K)	NF012183.0	tetracycline efflux MFS transporter Tet(K)
GCA_000027045.1_00080	mecA	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	core	AMR	AMR	BETA-LACTAM	METHICILLIN	BLASTP	668	668	100.00	99.70	668	WP_000721309.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NF000409.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA
GCA_000027045.1_00081	mecR1	beta-lactam sensor/signal transducer MecR1	core	AMR	AMR	BETA-LACTAM	METHICILLIN	EXACTP	585	585	100.00	100.00	585	WP_000952923.1	beta-lactam sensor/signal transducer MecR1	NF033109.1	beta-lactam sensor/signal transducer MecR1
GCA_000027045.1_00082	mecI	mecA-type methicillin resistance repressor MecI	core	AMR	AMR	BETA-LACTAM	METHICILLIN	PARTIALP	67	123	54.47	100.00	67	WP_000369214.1	mecA-type methicillin resistance repressor MecI	NA	NA
GCA_000027045.1_00157	tet(38)	tetracycline efflux MFS transporter Tet(38)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	452	450	100.00	100.00	450	WP_001100289.1	tetracycline efflux MFS transporter Tet(38)	NF012176.0	tetracycline efflux MFS transporter Tet(38)
GCA_000027045.1_00419	mepA	multidrug efflux MATE transporter MepA	plus	AMR	AMR	TETRACYCLINE	TIGECYCLINE	EXACTP	451	451	100.00	100.00	451	AAU95768.1	multidrug efflux MATE transporter MepA	NF000131.1	multidrug efflux MATE transporter MepA
GCA_000027045.1_00458	selX	staphylococcal enterotoxin-like toxin X	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	203	203	100.00	96.55	203	AEI60187.1	staphylococcal enterotoxin-like toxin X	NA	NA
GCA_000027045.1_00484	tet(M)	tetracycline resistance ribosomal protection protein Tet(M)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	EXACTP	639	639	100.00	100.00	639	WP_000691737.1	tetracycline resistance ribosomal protection protein Tet(M)	NF012155.1	tetracycline resistance ribosomal protection protein Tet(M)
GCA_000027045.1_00494	dfrG	trimethoprim-resistant dihydrofolate reductase DfrG	core	AMR	AMR	TRIMETHOPRIM	TRIMETHOPRIM	EXACTP	165	165	100.00	100.00	165	WP_000868795.1	trimethoprim-resistant dihydrofolate reductase DfrG	NF000143.1	trimethoprim-resistant dihydrofolate reductase DfrG
GCA_000027045.1_00946	sek	staphylococcal enterotoxin type K	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	242	242	100.00	99.17	242	AAW36439.1	staphylococcal enterotoxin type K	NA	NA
GCA_000027045.1_00947	seq	staphylococcal enterotoxin type Q	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	242	242	100.00	100.00	242	EYN56163.1	staphylococcal enterotoxin type Q	NA	NA
GCA_000027045.1_01686	sel26	staphylococcal enterotoxin type 26	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	250	250	100.00	96.80	250	KAG18833.1	staphylococcal enterotoxin type 26	NA	NA
GCA_000027045.1_01741	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	EXACTP	243	243	100.00	100.00	243	WP_001072201.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF012222.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)
GCA_000027045.1_01742	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	EXACTP	260	260	100.00	100.00	260	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_000027045.1_01868	arsB	arsenite efflux transporter membrane subunit ArsB	plus	STRESS	METAL	ARSENIC	ARSENITE	HMM	430	429	100.00	81.35	429	AAA25637.1	arsenite efflux transporter membrane subunit ArsB	NF033877.0	arsenite efflux transporter membrane subunit ArsB
GCA_000027045.1_01913	splE	serine protease SplE	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	238	238	100.00	100.00	238	ABD30999.1	serine protease SplE	NA	NA
GCA_000027045.1_01916	splB	serine protease SplB	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	240	240	100.00	100.00	240	ABD31003.1	serine protease SplB	NA	NA
GCA_000027045.1_01917	splA	serine protease SplA	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	235	235	100.00	100.00	235	ABD31004.1	serine protease SplA	NA	NA
GCA_000027045.1_01927	lukD	bi-component leukocidin LukED subunit D	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	327	327	100.00	94.50	327	CAA73668.1	bi-component leukocidin LukED subunit D	NA	NA
GCA_000027045.1_01928	lukE	bi-component leukocidin LukED subunit E	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	311	311	100.00	99.36	311	RCV70079.1	bi-component leukocidin LukED subunit E	NA	NA
GCA_000027045.1_02088	scn	complement inhibitor SCIN-A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	116	116	100.00	99.14	116	ADL23798.1	complement inhibitor SCIN-A	NA	NA
GCA_000027045.1_02092	sak	staphylokinase	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	163	163	100.00	99.39	163	CAA24957.1	staphylokinase	NA	NA
GCA_000027045.1_02096	sea	staphylococcal enterotoxin type A	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	257	257	100.00	100.00	257	BAV60816.1	staphylococcal enterotoxin type A	NA	NA
GCA_000027045.1_02173	hld	delta-hemolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	44	26	100.00	100.00	26	AGU62139.1	delta-hemolysin	NA	NA
GCA_000027045.1_02224	aac(6')-Ie/aph(2'')-Ia	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN	BLASTP	479	479	100.00	99.79	479	WP_001028144.1	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NF000508.1	aminoglycoside O-phosphotransferase APH(2'')-Ia
GCA_000027045.1_02230	aph(3')-IIIa	aminoglycoside O-phosphotransferase APH(3')-IIIa	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/KANAMYCIN	EXACTP	264	264	100.00	100.00	264	WP_001096887.1	aminoglycoside O-phosphotransferase APH(3')-IIIa	NF033064.0	aminoglycoside O-phosphotransferase APH(3')-IIIa
GCA_000027045.1_02472	lmrS	multidrug efflux MFS transporter LmrS	plus	STRESS	BIOCIDE	MACROLIDE/PHENICOL	CHLORAMPHENICOL/ERYTHROMYCIN	EXACTP	480	480	100.00	100.00	480	AAW38464.1	multidrug efflux MFS transporter LmrS	NA	NA
GCA_000027045.1_02647	fosB	FosB/FosD family fosfomycin resistance bacillithiol transferase	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	EXACTP	139	139	100.00	100.00	139	WP_000920239.1	FosB/FosD family fosfomycin resistance bacillithiol transferase	NF000493.1	FosB/FosD family fosfomycin resistance bacillithiol transferase
GCA_000027045.1_02734	hlgA	bi-component gamma-hemolysin HlgAB subunit A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	321	309	100.00	100.00	309	AUU54669.1	bi-component gamma-hemolysin HlgAB subunit A	NA	NA
GCA_000027045.1_02735	hlgC	bi-component gamma-hemolysin HlgCB subunit C	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	315	315	100.00	97.14	315	CAA57277.1	bi-component gamma-hemolysin HlgCB subunit C	NA	NA
GCA_000027045.1_02736	hlgB	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	325	325	100.00	97.54	325	CAA57278.1	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	NA
GCA_000027045.1_02808	sasG	LPXTG-anchored surface protein SasG	plus	VIRULENCE	VIRULENCE	NA	NA	PARTIALP	910	1115	81.61	99.56	910	BAF79363.1	LPXTG-anchored surface protein SasG	NA	NA
GCA_000027045.1_02906	blaI	penicillinase repressor BlaI	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	EXACTP	126	126	100.00	100.00	126	WP_001284656.1	penicillinase repressor BlaI	NF000186.1	penicillinase repressor BlaI
GCA_000027045.1_02907	blaR1	beta-lactam sensor/signal transducer BlaR1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	585	585	100.00	99.83	585	WP_001096376.1	beta-lactam sensor/signal transducer BlaR1	NF033108.1	beta-lactam sensor/signal transducer BlaR1
GCA_000027045.1_02908	blaZ	penicillin-hydrolyzing class A beta-lactamase BlaZ	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	281	281	100.00	99.64	281	WP_000733283.1	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NF033139.1	penicillin-hydrolyzing class A beta-lactamase BlaZ
GCA_000027045.1_02976	aur	zinc metalloproteinase aureolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	509	509	100.00	93.71	509	EHO93748.1	zinc metalloproteinase aureolysin	NA	NA
GCA_000027045.1_03011	icaC	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	plus	VIRULENCE	VIRULENCE	NA	NA	PARTIALP	294	350	81.71	98.95	286	AUU58561.1	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	NA	NA
GCA_000027045.1_03062	merB	organomercurial lyase MerB	plus	STRESS	METAL	MERCURY	ORGANOMERCURY	EXACTP	216	216	100.00	100.00	216	BAB47641.1	organomercurial lyase MerB	NF033555.1	organomercurial lyase MerB
GCA_000027045.1_03080	qacA	quaternary ammonium compound efflux MFS transporter QacA	core	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTP	514	514	100.00	99.81	514	WP_000622776.1	quaternary ammonium compound efflux MFS transporter QacA	NF000089.1	QacA/B family quaternary ammonium compound efflux MFS transporter
GCA_000027045.1_03081	qacR	multidrug-binding transcriptional regulator QacR	plus	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTP	186	188	98.94	99.46	186	ADK23698.1	multidrug-binding transcriptional regulator QacR	NA	NA
GCA_000027045.1_03088	cadC	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	plus	STRESS	METAL	CADMIUM/LEAD/ZINC	CADMIUM/LEAD/ZINC	EXACTP	122	122	100.00	100.00	122	AAB59153.1	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	NA	NA
GCA_000027045.1_03095	merT	mercuric transport protein MerT	plus	STRESS	METAL	MERCURY	MERCURY	EXACTP	128	128	100.00	100.00	128	ADA79992.1	mercuric transport protein MerT	NA	NA
GCA_000027045.1_03096	merA	mercury(II) reductase	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	547	547	99.82	100.00	546	AAA98245.1	mercury(II) reductase	TIGR02053.1	mercury(II) reductase