Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_000145595.1_00036	bleO	bleomycin binding protein	core	AMR	AMR	BLEOMYCIN	BLEOMYCIN	EXACTP	134	134	100.00	100.00	134	WP_001242578.1	bleomycin binding protein	NF000027.1	bleomycin binding protein
GCA_000145595.1_00037	aadD1	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	core	AMR	AMR	AMINOGLYCOSIDE	KANAMYCIN/TOBRAMYCIN	BLASTP	247	253	97.63	100.00	247	WP_001014230.1	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	NF000181.1	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia
GCA_000145595.1_00042	mecA	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	core	AMR	AMR	BETA-LACTAM	METHICILLIN	EXACTP	668	668	100.00	100.00	668	WP_000721310.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NF000409.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA
GCA_000145595.1_00043	mecR1	beta-lactam sensor/signal transducer MecR1	core	AMR	AMR	BETA-LACTAM	METHICILLIN	EXACTP	585	585	100.00	100.00	585	WP_000952923.1	beta-lactam sensor/signal transducer MecR1	NF033109.1	beta-lactam sensor/signal transducer MecR1
GCA_000145595.1_00044	mecI	mecA-type methicillin resistance repressor MecI	core	AMR	AMR	BETA-LACTAM	METHICILLIN	EXACTP	123	123	100.00	100.00	123	WP_000369216.1	mecA-type methicillin resistance repressor MecI	NF000243.1	mecA-type methicillin resistance repressor MecI
GCA_000145595.1_00119	tet(38)	tetracycline efflux MFS transporter Tet(38)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	452	450	100.00	100.00	450	WP_001100289.1	tetracycline efflux MFS transporter Tet(38)	NF012176.0	tetracycline efflux MFS transporter Tet(38)
GCA_000145595.1_00315	mepA	multidrug efflux MATE transporter MepA	plus	AMR	AMR	TETRACYCLINE	TIGECYCLINE	EXACTP	451	451	100.00	100.00	451	AAU95768.1	multidrug efflux MATE transporter MepA	NF000131.1	multidrug efflux MATE transporter MepA
GCA_000145595.1_00375	selX	staphylococcal enterotoxin-like toxin X	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	203	203	100.00	96.55	203	AEI60187.1	staphylococcal enterotoxin-like toxin X	NA	NA
GCA_000145595.1_00402	tet(M)	tetracycline resistance ribosomal protection protein Tet(M)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	EXACTP	639	639	100.00	100.00	639	WP_000691737.1	tetracycline resistance ribosomal protection protein Tet(M)	NF012155.1	tetracycline resistance ribosomal protection protein Tet(M)
GCA_000145595.1_00868	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	EXACTP	260	260	100.00	100.00	260	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_000145595.1_00869	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	EXACTP	243	243	100.00	100.00	243	WP_001072197.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF012222.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)
GCA_000145595.1_00880	sek	staphylococcal enterotoxin type K	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	242	242	100.00	99.17	242	AAW36439.1	staphylococcal enterotoxin type K	NA	NA
GCA_000145595.1_00881	seq	staphylococcal enterotoxin type Q	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	242	242	100.00	100.00	242	EYN56163.1	staphylococcal enterotoxin type Q	NA	NA
GCA_000145595.1_01627	sel26	staphylococcal enterotoxin type 26	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	250	250	100.00	96.40	250	KAG18833.1	staphylococcal enterotoxin type 26	NA	NA
GCA_000145595.1_01680	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	EXACTP	243	243	100.00	100.00	243	WP_001072197.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF012222.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)
GCA_000145595.1_01681	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	EXACTP	260	260	100.00	100.00	260	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_000145595.1_01807	arsB	arsenite efflux transporter membrane subunit ArsB	plus	STRESS	METAL	ARSENIC	ARSENITE	HMM	430	429	100.00	81.35	429	AAA25637.1	arsenite efflux transporter membrane subunit ArsB	NF033877.0	arsenite efflux transporter membrane subunit ArsB
GCA_000145595.1_02063	sak	staphylokinase	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	163	163	100.00	99.39	163	CAA24957.1	staphylokinase	NA	NA
GCA_000145595.1_02067	scn	complement inhibitor SCIN-A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	116	116	100.00	99.14	116	ADL23798.1	complement inhibitor SCIN-A	NA	NA
GCA_000145595.1_02081	dfrS1	trimethoprim-resistant dihydrofolate reductase DfrS1	core	AMR	AMR	TRIMETHOPRIM	TRIMETHOPRIM	ALLELEP	161	161	100.00	100.00	161	WP_000175735.1	trimethoprim-resistant dihydrofolate reductase DfrS1	NA	NA
GCA_000145595.1_02103	aac(6')-Ie/aph(2'')-Ia	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN	EXACTP	479	479	100.00	100.00	479	WP_001028144.1	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NF000508.1	aminoglycoside O-phosphotransferase APH(2'')-Ia
GCA_000145595.1_02105	qacA	quaternary ammonium compound efflux MFS transporter QacA	core	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	EXACTP	514	514	100.00	100.00	514	WP_000622776.1	quaternary ammonium compound efflux MFS transporter QacA	NF000089.1	QacA/B family quaternary ammonium compound efflux MFS transporter
GCA_000145595.1_02106	qacR	multidrug-binding transcriptional regulator QacR	plus	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTP	186	188	98.94	99.46	186	ADK23698.1	multidrug-binding transcriptional regulator QacR	NA	NA
GCA_000145595.1_02113	sea	staphylococcal enterotoxin type A	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	257	257	100.00	100.00	257	BAV60816.1	staphylococcal enterotoxin type A	NA	NA
GCA_000145595.1_02185	hld	delta-hemolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	44	26	100.00	100.00	26	AGU62139.1	delta-hemolysin	NA	NA
GCA_000145595.1_02358	lmrS	multidrug efflux MFS transporter LmrS	plus	STRESS	BIOCIDE	MACROLIDE/PHENICOL	CHLORAMPHENICOL/ERYTHROMYCIN	EXACTP	480	480	100.00	100.00	480	AAW38464.1	multidrug efflux MFS transporter LmrS	NA	NA
GCA_000145595.1_02533	fosB	FosB/FosD family fosfomycin resistance bacillithiol transferase	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	EXACTP	139	139	100.00	100.00	139	WP_000920239.1	FosB/FosD family fosfomycin resistance bacillithiol transferase	NF000493.1	FosB/FosD family fosfomycin resistance bacillithiol transferase
GCA_000145595.1_02622	hlgA	bi-component gamma-hemolysin HlgAB subunit A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	321	309	100.00	100.00	309	AUU54669.1	bi-component gamma-hemolysin HlgAB subunit A	NA	NA
GCA_000145595.1_02623	hlgC	bi-component gamma-hemolysin HlgCB subunit C	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	315	315	100.00	97.14	315	CAA57277.1	bi-component gamma-hemolysin HlgCB subunit C	NA	NA
GCA_000145595.1_02624	hlgB	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	325	325	100.00	97.54	325	CAA57278.1	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	NA
GCA_000145595.1_02697	sasG	LPXTG-anchored surface protein SasG	plus	VIRULENCE	VIRULENCE	NA	NA	PARTIALP	910	1115	81.61	99.56	910	BAF79363.1	LPXTG-anchored surface protein SasG	NA	NA
GCA_000145595.1_02796	blaI	penicillinase repressor BlaI	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	EXACTP	126	126	100.00	100.00	126	WP_001284656.1	penicillinase repressor BlaI	NF000186.1	penicillinase repressor BlaI
GCA_000145595.1_02797	blaR1	beta-lactam sensor/signal transducer BlaR1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	585	585	100.00	99.83	585	WP_001096376.1	beta-lactam sensor/signal transducer BlaR1	NF033108.1	beta-lactam sensor/signal transducer BlaR1
GCA_000145595.1_02798	blaPC1	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	281	281	100.00	100.00	281	WP_000733283.1	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NF033139.1	penicillin-hydrolyzing class A beta-lactamase BlaZ
GCA_000145595.1_02866	aur	zinc metalloproteinase aureolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	509	509	100.00	93.71	509	EHO93748.1	zinc metalloproteinase aureolysin	NA	NA
GCA_000145595.1_02901	icaC	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	354	350	100.00	98.02	354	AUU58561.1	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	NA	NA