Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_000204665.1_00034	mecA	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	core	AMR	AMR	BETA-LACTAM	METHICILLIN	EXACTP	668	668	100.00	100.00	668	WP_000721310.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NF000409.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA
GCA_000204665.1_00035	mecR1	beta-lactam sensor/signal transducer MecR1	core	AMR	AMR	BETA-LACTAM	METHICILLIN	EXACTP	585	585	100.00	100.00	585	WP_000952923.1	beta-lactam sensor/signal transducer MecR1	NF033109.1	beta-lactam sensor/signal transducer MecR1
GCA_000204665.1_00036	mecI	mecA-type methicillin resistance repressor MecI	core	AMR	AMR	BETA-LACTAM	METHICILLIN	PARTIALP	67	123	54.47	100.00	67	WP_000369214.1	mecA-type methicillin resistance repressor MecI	NA	NA
GCA_000204665.1_00115	tet(38)	tetracycline efflux MFS transporter Tet(38)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	452	450	100.00	100.00	450	WP_001100289.1	tetracycline efflux MFS transporter Tet(38)	NF012176.0	tetracycline efflux MFS transporter Tet(38)
GCA_000204665.1_00312	mepA	multidrug efflux MATE transporter MepA	plus	AMR	AMR	TETRACYCLINE	TIGECYCLINE	EXACTP	451	451	100.00	100.00	451	AAU95768.1	multidrug efflux MATE transporter MepA	NF000131.1	multidrug efflux MATE transporter MepA
GCA_000204665.1_00375	selX	staphylococcal enterotoxin-like toxin X	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	203	203	100.00	96.55	203	AEI60187.1	staphylococcal enterotoxin-like toxin X	NA	NA
GCA_000204665.1_00402	tet(M)	tetracycline resistance ribosomal protection protein Tet(M)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	EXACTP	639	639	100.00	100.00	639	WP_000691737.1	tetracycline resistance ribosomal protection protein Tet(M)	NF012155.1	tetracycline resistance ribosomal protection protein Tet(M)
GCA_000204665.1_00884	sek	staphylococcal enterotoxin type K	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	242	242	100.00	99.17	242	AAW36439.1	staphylococcal enterotoxin type K	NA	NA
GCA_000204665.1_00885	seq	staphylococcal enterotoxin type Q	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	242	242	100.00	99.59	242	EYN56163.1	staphylococcal enterotoxin type Q	NA	NA
GCA_000204665.1_01631	sel26	staphylococcal enterotoxin type 26	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	250	250	100.00	96.80	250	KAG18833.1	staphylococcal enterotoxin type 26	NA	NA
GCA_000204665.1_01684	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	PARTIALP	191	243	78.60	100.00	191	WP_001072201.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF000499.2	23S ribosomal RNA methyltransferase Erm
GCA_000204665.1_01685	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	EXACTP	260	260	100.00	100.00	260	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_000204665.1_01814	arsB	arsenite efflux transporter membrane subunit ArsB	plus	STRESS	METAL	ARSENIC	ARSENITE	HMM	430	429	100.00	81.35	429	AAA25637.1	arsenite efflux transporter membrane subunit ArsB	NF033877.0	arsenite efflux transporter membrane subunit ArsB
GCA_000204665.1_01859	splB	serine protease SplB	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	240	240	100.00	100.00	240	ABD31003.1	serine protease SplB	NA	NA
GCA_000204665.1_01860	splA	serine protease SplA	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	235	235	100.00	100.00	235	ABD31004.1	serine protease SplA	NA	NA
GCA_000204665.1_01871	lukE	bi-component leukocidin LukED subunit E	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	311	311	100.00	99.68	311	RCV70079.1	bi-component leukocidin LukED subunit E	NA	NA
GCA_000204665.1_02026	scn	complement inhibitor SCIN-A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	116	116	100.00	99.14	116	ADL23798.1	complement inhibitor SCIN-A	NA	NA
GCA_000204665.1_02030	sak	staphylokinase	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	163	163	100.00	99.39	163	CAA24957.1	staphylokinase	NA	NA
GCA_000204665.1_02034	sea	staphylococcal enterotoxin type A	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	257	257	100.00	100.00	257	BAV60816.1	staphylococcal enterotoxin type A	NA	NA
GCA_000204665.1_02128	hld	delta-hemolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	44	26	100.00	100.00	26	AGU62139.1	delta-hemolysin	NA	NA
GCA_000204665.1_02279	lmrS	multidrug efflux MFS transporter LmrS	plus	STRESS	BIOCIDE	MACROLIDE/PHENICOL	CHLORAMPHENICOL/ERYTHROMYCIN	BLASTP	480	480	100.00	99.79	480	AAW38464.1	multidrug efflux MFS transporter LmrS	NA	NA
GCA_000204665.1_02458	fosB	FosB/FosD family fosfomycin resistance bacillithiol transferase	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	EXACTP	139	139	100.00	100.00	139	WP_000920239.1	FosB/FosD family fosfomycin resistance bacillithiol transferase	NF000493.1	FosB/FosD family fosfomycin resistance bacillithiol transferase
GCA_000204665.1_02545	hlgA	bi-component gamma-hemolysin HlgAB subunit A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	321	309	100.00	100.00	309	AUU54669.1	bi-component gamma-hemolysin HlgAB subunit A	NA	NA
GCA_000204665.1_02546	hlgC	bi-component gamma-hemolysin HlgCB subunit C	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	315	315	100.00	97.14	315	CAA57277.1	bi-component gamma-hemolysin HlgCB subunit C	NA	NA
GCA_000204665.1_02547	hlgB	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	325	325	100.00	97.54	325	CAA57278.1	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	NA
GCA_000204665.1_02719	blaI	penicillinase repressor BlaI	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	EXACTP	126	126	100.00	100.00	126	WP_001284656.1	penicillinase repressor BlaI	NF000186.1	penicillinase repressor BlaI
GCA_000204665.1_02720	blaR1	beta-lactam sensor/signal transducer BlaR1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	585	585	100.00	99.83	585	WP_001096376.1	beta-lactam sensor/signal transducer BlaR1	NF033108.1	beta-lactam sensor/signal transducer BlaR1
GCA_000204665.1_02721	blaZ	penicillin-hydrolyzing class A beta-lactamase BlaZ	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	209	281	74.38	99.52	209	WP_000733283.1	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NF033103.1	class A beta-lactamase
GCA_000204665.1_02780	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	EXACTP	260	260	100.00	100.00	260	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_000204665.1_02816	aur	zinc metalloproteinase aureolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	509	509	100.00	93.71	509	EHO93748.1	zinc metalloproteinase aureolysin	NA	NA
GCA_000204665.1_02852	icaC	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	354	350	100.00	97.74	354	AUU58561.1	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	NA	NA