Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_000239235.1_00035	mecA	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	core	AMR	AMR	BETA-LACTAM	METHICILLIN	EXACTP	668	668	100.00	100.00	668	WP_000721309.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NF000409.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA
GCA_000239235.1_00036	mecR1	beta-lactam sensor/signal transducer MecR1	core	AMR	AMR	BETA-LACTAM	METHICILLIN	PARTIALP	328	585	55.56	100.00	325	WP_000952923.1	beta-lactam sensor/signal transducer MecR1	NA	NA
GCA_000239235.1_00046	blaI	penicillinase repressor BlaI	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	EXACTP	126	126	100.00	100.00	126	WP_001284656.1	penicillinase repressor BlaI	NF000186.1	penicillinase repressor BlaI
GCA_000239235.1_00047	blaR1	beta-lactam sensor/signal transducer BlaR1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	EXACTP	585	585	100.00	100.00	585	WP_001096386.1	beta-lactam sensor/signal transducer BlaR1	NF033108.1	beta-lactam sensor/signal transducer BlaR1
GCA_000239235.1_00048	blaZ	penicillin-hydrolyzing class A beta-lactamase BlaZ	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	281	281	100.00	99.29	281	WP_000733274.1	penicillin-hydrolyzing class A beta-lactamase BlaZ	NF033139.1	penicillin-hydrolyzing class A beta-lactamase BlaZ
GCA_000239235.1_00049	mph(C)	Mph(C) family macrolide 2'-phosphotransferase	core	AMR	AMR	MACROLIDE	ERYTHROMYCIN/SPIRAMYCIN/TELITHROMYCIN	EXACTP	299	299	100.00	100.00	299	WP_000196697.1	Mph(C) family macrolide 2'-phosphotransferase	NF000240.1	Mph(C) family macrolide 2'-phosphotransferase
GCA_000239235.1_00050	msr(A)	ABC-F type ribosomal protection protein Msr(A)	core	AMR	AMR	MACROLIDE/STREPTOGRAMIN	ERYTHROMYCIN/STREPTOGRAMIN B	EXACTP	488	488	100.00	100.00	488	WP_000438874.1	ABC-F type ribosomal protection protein Msr(A)	NF000256.1	ABC-F type ribosomal protection protein Msr(A)
GCA_000239235.1_00064	sat4	streptothricin N-acetyltransferase Sat4	core	AMR	AMR	STREPTOTHRICIN	STREPTOTHRICIN	BLASTP	176	180	100.00	97.78	180	WP_000627290.1	streptothricin N-acetyltransferase Sat4	NF000360.1	streptothricin N-acetyltransferase Sat4
GCA_000239235.1_00065	aph(3')-IIIa	aminoglycoside O-phosphotransferase APH(3')-IIIa	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/KANAMYCIN	EXACTP	264	264	100.00	100.00	264	WP_001096887.1	aminoglycoside O-phosphotransferase APH(3')-IIIa	NF033064.0	aminoglycoside O-phosphotransferase APH(3')-IIIa
GCA_000239235.1_00130	tet(38)	tetracycline efflux MFS transporter Tet(38)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	452	450	100.00	100.00	450	WP_001100300.1	tetracycline efflux MFS transporter Tet(38)	NF012176.0	tetracycline efflux MFS transporter Tet(38)
GCA_000239235.1_00327	mepA	multidrug efflux MATE transporter MepA	plus	AMR	AMR	TETRACYCLINE	TIGECYCLINE	BLASTP	451	451	100.00	99.56	451	AAU95768.1	multidrug efflux MATE transporter MepA	NF000131.1	multidrug efflux MATE transporter MepA
GCA_000239235.1_00363	selX	staphylococcal enterotoxin-like toxin X	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	203	203	100.00	96.55	203	AEI60187.1	staphylococcal enterotoxin-like toxin X	NA	NA
GCA_000239235.1_01488	lukF-PV	Panton-Valentine bi-component leukocidin subunit F	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	325	325	100.00	98.77	325	BAA24008.1	Panton-Valentine bi-component leukocidin subunit F	NA	NA
GCA_000239235.1_01489	lukS-PV	Panton-Valentine bi-component leukocidin subunit S	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	312	312	100.00	100.00	312	AGW33874.1	Panton-Valentine bi-component leukocidin subunit S	NA	NA
GCA_000239235.1_01663	sel26	staphylococcal enterotoxin type 26	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	250	250	100.00	94.80	250	KAG18833.1	staphylococcal enterotoxin type 26	NA	NA
GCA_000239235.1_01828	arsB	arsenite efflux transporter membrane subunit ArsB	plus	STRESS	METAL	ARSENIC	ARSENITE	HMM	430	429	100.00	81.35	429	AAA25637.1	arsenite efflux transporter membrane subunit ArsB	NF033877.0	arsenite efflux transporter membrane subunit ArsB
GCA_000239235.1_01867	splB	serine protease SplB	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	240	240	100.00	99.17	240	ABD31003.1	serine protease SplB	NA	NA
GCA_000239235.1_01868	splA	serine protease SplA	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	235	235	100.00	98.72	235	ABD31004.1	serine protease SplA	NA	NA
GCA_000239235.1_01878	lukD	bi-component leukocidin LukED subunit D	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	327	327	100.00	94.50	327	CAA73668.1	bi-component leukocidin LukED subunit D	NA	NA
GCA_000239235.1_01879	lukE	bi-component leukocidin LukED subunit E	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	311	311	100.00	99.68	311	RCV70079.1	bi-component leukocidin LukED subunit E	NA	NA
GCA_000239235.1_02035	scn	complement inhibitor SCIN-A	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	116	116	100.00	100.00	116	ADL23798.1	complement inhibitor SCIN-A	NA	NA
GCA_000239235.1_02039	sak	staphylokinase	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	163	163	100.00	100.00	163	CAA24957.1	staphylokinase	NA	NA
GCA_000239235.1_02111	hld	delta-hemolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	44	26	100.00	100.00	26	AGU62139.1	delta-hemolysin	NA	NA
GCA_000239235.1_02260	lmrS	multidrug efflux MFS transporter LmrS	plus	STRESS	BIOCIDE	MACROLIDE/PHENICOL	CHLORAMPHENICOL/ERYTHROMYCIN	BLASTP	480	480	100.00	99.38	480	AAW38464.1	multidrug efflux MFS transporter LmrS	NA	NA
GCA_000239235.1_02302	ednB	epidermal cell differentiation inhibitor EdnB	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	247	251	98.41	100.00	247	AXN77488.1	epidermal cell differentiation inhibitor EdnB	NA	NA
GCA_000239235.1_02513	hlgA	bi-component gamma-hemolysin HlgAB subunit A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	321	309	100.00	99.68	309	AUU54669.1	bi-component gamma-hemolysin HlgAB subunit A	NA	NA
GCA_000239235.1_02514	hlgC	bi-component gamma-hemolysin HlgCB subunit C	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	315	315	100.00	97.46	315	CAA57277.1	bi-component gamma-hemolysin HlgCB subunit C	NA	NA
GCA_000239235.1_02515	hlgB	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	325	325	100.00	97.54	325	CAA57278.1	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	NA
GCA_000239235.1_02643	sey	staphylococcal enterotoxin type Y	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	221	221	100.00	99.10	221	BAS21358.1	staphylococcal enterotoxin type Y	NA	NA
GCA_000239235.1_02734	aur	zinc metalloproteinase aureolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	509	509	100.00	99.41	509	EHO93748.1	zinc metalloproteinase aureolysin	NA	NA
GCA_000239235.1_02768	icaC	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	350	350	100.00	99.71	350	AUU58561.1	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	NA	NA
GCA_000239235.1_02812	fusB	fusidic acid resistance EF-G-binding protein FusB	core	AMR	AMR	FUSIDIC ACID	FUSIDIC ACID	EXACTP	213	213	100.00	100.00	213	WP_000855537.1	fusidic acid resistance EF-G-binding protein FusB	NF000340.1	FusB family fusidic acid resistance EF-G-binding protein
GCA_000239235.1_02815	blaZ	penicillin-hydrolyzing class A beta-lactamase BlaZ	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	EXACTP	281	281	100.00	100.00	281	WP_000733274.1	penicillin-hydrolyzing class A beta-lactamase BlaZ	NF033139.1	penicillin-hydrolyzing class A beta-lactamase BlaZ
GCA_000239235.1_02816	blaR1	beta-lactam sensor/signal transducer BlaR1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	EXACTP	585	585	100.00	100.00	585	WP_001096386.1	beta-lactam sensor/signal transducer BlaR1	NF033108.1	beta-lactam sensor/signal transducer BlaR1
GCA_000239235.1_02817	blaI	penicillinase repressor BlaI	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	126	126	100.00	99.21	126	WP_001284656.1	penicillinase repressor BlaI	NF000186.1	penicillinase repressor BlaI
GCA_000239235.1_02820	cadC	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	plus	STRESS	METAL	CADMIUM/LEAD/ZINC	CADMIUM/LEAD/ZINC	PARTIALP	88	122	72.13	98.86	88	AAB59153.1	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	NA	NA