Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_000383005.1_00033	mecA	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	core	AMR	AMR	BETA-LACTAM	METHICILLIN	BLASTP	668	668	100.00	99.85	668	WP_000721310.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NF000409.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA
GCA_000383005.1_00034	mecR1	beta-lactam sensor/signal transducer MecR1	core	AMR	AMR	BETA-LACTAM	METHICILLIN	PARTIALP	328	585	55.56	100.00	325	WP_000952923.1	beta-lactam sensor/signal transducer MecR1	NA	NA
GCA_000383005.1_00108	tet(38)	tetracycline efflux MFS transporter Tet(38)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	452	450	100.00	100.00	450	WP_001100299.1	tetracycline efflux MFS transporter Tet(38)	NF012176.0	tetracycline efflux MFS transporter Tet(38)
GCA_000383005.1_00304	mepA	multidrug efflux MATE transporter MepA	plus	AMR	AMR	TETRACYCLINE	TIGECYCLINE	EXACTP	451	451	100.00	100.00	451	BAB41547.1	multidrug efflux MATE transporter MepA	NF000131.1	multidrug efflux MATE transporter MepA
GCA_000383005.1_00341	selX	staphylococcal enterotoxin-like toxin X	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	203	203	100.00	96.06	203	AEI60187.1	staphylococcal enterotoxin-like toxin X	NA	NA
GCA_000383005.1_00806	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	EXACTP	260	260	100.00	100.00	260	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_000383005.1_00807	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	EXACTP	243	243	100.00	100.00	243	WP_001072201.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF012222.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)
GCA_000383005.1_01585	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	EXACTP	243	243	100.00	100.00	243	WP_001072201.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF012222.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)
GCA_000383005.1_01586	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	EXACTP	260	260	100.00	100.00	260	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_000383005.1_01706	arsB	arsenite efflux transporter membrane subunit ArsB	plus	STRESS	METAL	ARSENIC	ARSENITE	HMM	430	429	100.00	81.35	429	AAA25637.1	arsenite efflux transporter membrane subunit ArsB	NF033877.0	arsenite efflux transporter membrane subunit ArsB
GCA_000383005.1_01748	splB	serine protease SplB	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	240	240	100.00	98.75	240	ABD31003.1	serine protease SplB	NA	NA
GCA_000383005.1_01749	splA	serine protease SplA	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	235	235	100.00	96.60	235	ABD31004.1	serine protease SplA	NA	NA
GCA_000383005.1_01754	lukD	bi-component leukocidin LukED subunit D	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	327	327	100.00	94.19	327	CAA73668.1	bi-component leukocidin LukED subunit D	NA	NA
GCA_000383005.1_01755	lukE	bi-component leukocidin LukED subunit E	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	311	311	100.00	99.68	311	RCV70079.1	bi-component leukocidin LukED subunit E	NA	NA
GCA_000383005.1_01763	sen	staphylococcal enterotoxin type N	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	251	272	92.28	100.00	251	SAO78304.1	staphylococcal enterotoxin type N	NA	NA
GCA_000383005.1_01764	seu	staphylococcal enterotoxin type U	plus	VIRULENCE	VIRULENCE	NA	NA	PARTIALP	131	261	50.19	94.66	131	SGR88168.1	staphylococcal enterotoxin type U	NA	NA
GCA_000383005.1_01766	sei	staphylococcal enterotoxin type I	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	242	243	99.59	93.80	242	SGR88193.1	staphylococcal enterotoxin type I	NA	NA
GCA_000383005.1_01767	sem	staphylococcal enterotoxin type M	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	239	239	100.00	94.14	239	SGR88215.1	staphylococcal enterotoxin type M	NA	NA
GCA_000383005.1_01768	seo	staphylococcal enterotoxin type O	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	254	260	97.69	100.00	254	BAB42916.1	staphylococcal enterotoxin type O	NA	NA
GCA_000383005.1_01924	scn	complement inhibitor SCIN-A	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	116	116	100.00	100.00	116	ADL23798.1	complement inhibitor SCIN-A	NA	NA
GCA_000383005.1_01928	sak	staphylokinase	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	163	163	100.00	100.00	163	CAA24957.1	staphylokinase	NA	NA
GCA_000383005.1_01932	sea	staphylococcal enterotoxin type A	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	257	257	100.00	100.00	257	BAV60816.1	staphylococcal enterotoxin type A	NA	NA
GCA_000383005.1_01990	hld	delta-hemolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	44	26	100.00	100.00	26	AGU62139.1	delta-hemolysin	NA	NA
GCA_000383005.1_02112	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	EXACTP	243	243	100.00	100.00	243	WP_001072201.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF012222.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)
GCA_000383005.1_02113	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	EXACTP	260	260	100.00	100.00	260	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_000383005.1_02143	lmrS	multidrug efflux MFS transporter LmrS	plus	STRESS	BIOCIDE	MACROLIDE/PHENICOL	CHLORAMPHENICOL/ERYTHROMYCIN	PARTIALP	262	480	54.58	98.09	262	AAW38464.1	multidrug efflux MFS transporter LmrS	NA	NA
GCA_000383005.1_02315	fosB	FosB/FosD family fosfomycin resistance bacillithiol transferase	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	EXACTP	139	139	100.00	100.00	139	WP_000920239.1	FosB/FosD family fosfomycin resistance bacillithiol transferase	NF000493.1	FosB/FosD family fosfomycin resistance bacillithiol transferase
GCA_000383005.1_02399	hlgA	bi-component gamma-hemolysin HlgAB subunit A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	321	309	100.00	100.00	309	AUU54669.1	bi-component gamma-hemolysin HlgAB subunit A	NA	NA
GCA_000383005.1_02400	hlgC	bi-component gamma-hemolysin HlgCB subunit C	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	315	315	100.00	97.14	315	CAA57277.1	bi-component gamma-hemolysin HlgCB subunit C	NA	NA
GCA_000383005.1_02401	hlgB	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	325	325	100.00	97.54	325	CAA57278.1	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	NA
GCA_000383005.1_02583	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	EXACTP	243	243	100.00	100.00	243	WP_001072201.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF012222.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)
GCA_000383005.1_02584	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	EXACTP	260	260	100.00	100.00	260	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_000383005.1_02632	aur	zinc metalloproteinase aureolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	509	509	100.00	99.21	509	EHO93748.1	zinc metalloproteinase aureolysin	NA	NA
GCA_000383005.1_02666	icaC	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	350	350	100.00	100.00	350	AUU58561.1	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	NA	NA
GCA_000383005.1_02713	cadC	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	plus	STRESS	METAL	CADMIUM/LEAD/ZINC	CADMIUM/LEAD/ZINC	EXACTP	122	122	100.00	100.00	122	AAB59153.1	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	NA	NA
GCA_000383005.1_02714	blaPC1	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	281	281	100.00	100.00	281	WP_000733283.1	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NF033139.1	penicillin-hydrolyzing class A beta-lactamase BlaZ
GCA_000383005.1_02715	blaR1	beta-lactam sensor/signal transducer BlaR1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	585	585	100.00	99.83	585	WP_001096376.1	beta-lactam sensor/signal transducer BlaR1	NF033108.1	beta-lactam sensor/signal transducer BlaR1
GCA_000383005.1_02716	blaI	penicillinase repressor BlaI	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	EXACTP	126	126	100.00	100.00	126	WP_001284656.1	penicillinase repressor BlaI	NF000186.1	penicillinase repressor BlaI
GCA_000383005.1_02721	qacR	multidrug-binding transcriptional regulator QacR	plus	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTP	186	188	98.94	98.92	186	ADK23698.1	multidrug-binding transcriptional regulator QacR	NA	NA
GCA_000383005.1_02722	qacA	quaternary ammonium compound efflux MFS transporter QacA	core	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTP	504	514	98.05	100.00	504	WP_000622776.1	quaternary ammonium compound efflux MFS transporter QacA	NF000089.1	QacA/B family quaternary ammonium compound efflux MFS transporter