Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_000438685.2_00193	inlK	class 1 internalin InlK	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	606	598	100.00	91.09	606	AEO25637.1	class 1 internalin InlK	NF033186.1	class 1 internalin InlK
GCA_000438685.2_00733	fosX	fosfomycin resistance hydrolase FosX	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	EXACTP	133	133	100.00	100.00	133	WP_003726635.1	fosfomycin resistance hydrolase FosX	NF000222.1	FosX/FosE/FosI family fosfomycin resistance hydrolase
GCA_000438685.2_00875	inlC	class 3 internalin InlC	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	297	296	100.00	95.95	296	AHJ03495.1	class 3 internalin InlC	NA	NA
GCA_000438685.2_01611	inlP	class 3 internalin InlP	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	388	388	100.00	94.59	388	AEO26812.1	class 3 internalin InlP	NA	NA
GCA_000438685.2_01700	ami	autolysin Ami	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	917	917	100.00	98.80	917	ASH48222.1	autolysin Ami	NA	NA
GCA_000438685.2_02481	vip	cell invasion LPXTG protein Vip	plus	VIRULENCE	VIRULENCE	NA	NA	HMM	418	399	100.00	83.25	418	AEO24620.1	cell invasion LPXTG protein Vip	NF033201.1	cell invasion LPXTG protein Vip
GCA_000438685.2_02493	inlI	class 1 internalin InlI	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	1775	1778	100.00	93.70	1778	AEO24631.1	class 1 internalin InlI	NA	NA
GCA_000438685.2_02595	inlA	class 1 internalin InlA	plus	VIRULENCE	VIRULENCE	NA	NA	HMM	800	821	97.81	36.79	859	AEO24707.1	class 1 internalin InlA	NF033189.1	class 1 internalin InlA
GCA_000438685.2_02596	inlB	GW domain-containing class 2 internalin InlB	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	630	630	100.00	95.56	630	AEO24731.1	GW domain-containing class 2 internalin InlB	NA	NA
GCA_000438685.2_02599	lntA	nuclear targeted protein LntA	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	205	211	97.16	92.68	205	AEO24735.1	nuclear targeted protein LntA	NA	NA
GCA_000438685.2_02608	gadD1	glutamate decarboxylase GadD1	plus	STRESS	ACID	NA	NA	BLASTP	462	462	100.00	99.78	462	CAC98526.1	glutamate decarboxylase GadD1	NA	NA
GCA_000438685.2_02669	inl-lmo0514	lmo0514 family class 1 internalin Inl-lmo0514	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	609	605	100.00	94.30	614	AEO24812.1	lmo0514 family class 1 internalin Inl-lmo0514	NA	NA
GCA_000438685.2_03098	vga(G)	ABC-F type ribosomal protection protein Vga(G)	core	AMR	AMR	LINCOSAMIDE	LINCOSAMIDE	BLASTP	523	523	100.00	97.71	523	WP_010989615.1	ABC-F type ribosomal protection protein Vga(G)	NF000170.2	Vga family ABC-F type ribosomal protection protein
GCA_000438685.2_03255	aut	peptidoglycan hydrolase Auto	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	572	572	100.00	98.78	572	ADB67911.1	peptidoglycan hydrolase Auto	NA	NA
GCA_000438685.2_03322	clpL	ATP-dependent protease ClpL	plus	STRESS	HEAT	NA	NA	EXACTP	704	704	100.00	100.00	704	ADB69780.1	ATP-dependent protease ClpL	NA	NA
GCA_000438685.2_03342	cadC	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	plus	STRESS	METAL	CADMIUM	CADMIUM	EXACTP	119	119	100.00	100.00	119	AAA25276.1	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	NA	NA
GCA_000438685.2_03440	bcrB	quaternary ammonium compound efflux SMR transporter BcrB	core	STRESS	BIOCIDE	BACITRACIN	BACITRACIN	EXACTP	105	105	100.00	100.00	105	WP_003725293.1	quaternary ammonium compound efflux SMR transporter BcrB	NF033469.1	quaternary ammonium compound efflux SMR transporter BcrB
GCA_000438685.2_03441	bcrC	quaternary ammonium compound efflux SMR transporter BcrC	core	STRESS	BIOCIDE	BACITRACIN	BACITRACIN	EXACTP	114	114	100.00	100.00	114	WP_003725292.1	quaternary ammonium compound efflux SMR transporter BcrC	NF033470.1	quaternary ammonium compound efflux SMR transporter BcrC