Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_001298325.2_00073	mecA	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	core	AMR	AMR	BETA-LACTAM	METHICILLIN	BLASTP	668	668	100.00	99.85	668	WP_000721306.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NF000409.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA
GCA_001298325.2_00120	blaI	penicillinase repressor BlaI	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	EXACTP	126	126	100.00	100.00	126	WP_001284656.1	penicillinase repressor BlaI	NF000186.1	penicillinase repressor BlaI
GCA_001298325.2_00121	blaR1	beta-lactam sensor/signal transducer BlaR1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	585	585	100.00	99.83	585	WP_001096376.1	beta-lactam sensor/signal transducer BlaR1	NF033108.1	beta-lactam sensor/signal transducer BlaR1
GCA_001298325.2_00122	blaPC1	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	281	281	100.00	100.00	281	WP_000733283.1	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NF033139.1	penicillin-hydrolyzing class A beta-lactamase BlaZ
GCA_001298325.2_00127	aac(6')-Ie/aph(2'')-Ia	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN	EXACTP	479	479	100.00	100.00	479	WP_001028144.1	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NF000508.1	aminoglycoside O-phosphotransferase APH(2'')-Ia
GCA_001298325.2_00138	lnu(B)	lincosamide nucleotidyltransferase Lnu(B)	core	AMR	AMR	LINCOSAMIDE	LINCOSAMIDE	EXACTP	267	267	100.00	100.00	267	WP_002294514.1	lincosamide nucleotidyltransferase Lnu(B)	NF000235.3	lincosamide nucleotidyltransferase Lnu(B)
GCA_001298325.2_00139	lsa(E)	ABC-F type ribosomal protection protein Lsa(E)	core	AMR	AMR	LINCOSAMIDE/STREPTOGRAMIN	LINCOSAMIDE/STREPTOGRAMIN	EXACTP	494	494	100.00	100.00	494	WP_002294513.1	ABC-F type ribosomal protection protein Lsa(E)	NF000167.2	Lsa family ABC-F type ribosomal protection protein
GCA_001298325.2_00143	spw	ANT(9) family aminoglycoside nucleotidyltransferase Spw	core	AMR	AMR	AMINOGLYCOSIDE	AMINOGLYCOSIDE	EXACTP	269	269	100.00	100.00	269	WP_002294509.1	ANT(9) family aminoglycoside nucleotidyltransferase Spw	NF012212.1	ANT(9) family aminoglycoside nucleotidyltransferase
GCA_001298325.2_00145	ant(6)-Ia	aminoglycoside nucleotidyltransferase ANT(6)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	EXACTP	287	287	100.00	100.00	287	WP_002294505.1	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NF033084.2	aminoglycoside 6-nucleotidyltransferase
GCA_001298325.2_00150	arsR	As(III)-sensing metalloregulatory transcriptional repressor ArsR	plus	STRESS	METAL	ARSENIC	ARSENIC	BLASTP	104	104	100.00	99.04	104	AAA25636.1	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	NA
GCA_001298325.2_00151	arsB	arsenite efflux transporter membrane subunit ArsB	plus	STRESS	METAL	ARSENIC	ARSENITE	EXACTP	429	429	100.00	100.00	429	AAA25637.1	arsenite efflux transporter membrane subunit ArsB	NF033877.0	arsenite efflux transporter membrane subunit ArsB
GCA_001298325.2_00152	arsC	thioredoxin-dependent arsenate reductase	plus	STRESS	METAL	ARSENIC	ARSENATE	BLASTP	131	131	100.00	99.24	131	AAA25638.1	thioredoxin-dependent arsenate reductase	NA	NA
GCA_001298325.2_00180	tet(38)	tetracycline efflux MFS transporter Tet(38)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	452	450	100.00	100.00	450	WP_001100300.1	tetracycline efflux MFS transporter Tet(38)	NF012176.0	tetracycline efflux MFS transporter Tet(38)
GCA_001298325.2_00383	mepA	multidrug efflux MATE transporter MepA	plus	AMR	AMR	TETRACYCLINE	TIGECYCLINE	BLASTP	451	451	100.00	99.56	451	AAU95768.1	multidrug efflux MATE transporter MepA	NF000131.1	multidrug efflux MATE transporter MepA
GCA_001298325.2_00421	selX	staphylococcal enterotoxin-like toxin X	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	203	203	100.00	95.07	203	AEI60187.1	staphylococcal enterotoxin-like toxin X	NA	NA
GCA_001298325.2_01749	fexA	chloramphenicol/florfenicol efflux MFS transporter FexA	core	AMR	AMR	PHENICOL	CHLORAMPHENICOL/FLORFENICOL	BLASTP	475	475	100.00	99.37	475	WP_015585966.1	chloramphenicol/florfenicol efflux MFS transporter FexA	NF000218.1	chloramphenicol/florfenicol efflux MFS transporter FexA
GCA_001298325.2_01876	arsB	arsenite efflux transporter membrane subunit ArsB	plus	STRESS	METAL	ARSENIC	ARSENITE	HMM	430	429	100.00	81.35	429	AAA25637.1	arsenite efflux transporter membrane subunit ArsB	NF033877.0	arsenite efflux transporter membrane subunit ArsB
GCA_001298325.2_01903	sel28	staphylococcal enterotoxin type 28	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	256	241	100.00	98.76	241	NDR16747.1	staphylococcal enterotoxin type 28	NA	NA
GCA_001298325.2_01904	sel27	staphylococcal enterotoxin type 27	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	250	250	100.00	96.00	250	NDR16746.1	staphylococcal enterotoxin type 27	NA	NA
GCA_001298325.2_01927	sen	staphylococcal enterotoxin type N	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	251	272	92.28	99.60	251	SAO78304.1	staphylococcal enterotoxin type N	NA	NA
GCA_001298325.2_01928	seu	staphylococcal enterotoxin type U	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	256	261	100.00	94.25	261	SGR88168.1	staphylococcal enterotoxin type U	NA	NA
GCA_001298325.2_01929	sei	staphylococcal enterotoxin type I	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	242	243	99.59	93.80	242	SGR88193.1	staphylococcal enterotoxin type I	NA	NA
GCA_001298325.2_01930	sem	staphylococcal enterotoxin type M	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	239	239	100.00	94.14	239	SGR88215.1	staphylococcal enterotoxin type M	NA	NA
GCA_001298325.2_01931	seo	staphylococcal enterotoxin type O	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	254	260	97.69	99.61	254	BAB42916.1	staphylococcal enterotoxin type O	NA	NA
GCA_001298325.2_02138	blaI	penicillinase repressor BlaI	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	126	126	100.00	96.03	126	WP_001284656.1	penicillinase repressor BlaI	NF000186.1	penicillinase repressor BlaI
GCA_001298325.2_02139	blaR1	beta-lactam sensor/signal transducer BlaR1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	HMM	585	585	100.00	88.89	585	WP_001096386.1	beta-lactam sensor/signal transducer BlaR1	NF033108.1	beta-lactam sensor/signal transducer BlaR1
GCA_001298325.2_02140	blaZ	penicillin-hydrolyzing class A beta-lactamase BlaZ	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	281	281	100.00	95.02	281	WP_000733281.1	penicillin-hydrolyzing class A beta-lactamase BlaZ	NF033139.1	penicillin-hydrolyzing class A beta-lactamase BlaZ
GCA_001298325.2_02179	hld	delta-hemolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	44	26	100.00	100.00	26	AGU62139.1	delta-hemolysin	NA	NA
GCA_001298325.2_02328	lmrS	multidrug efflux MFS transporter LmrS	plus	STRESS	BIOCIDE	MACROLIDE/PHENICOL	CHLORAMPHENICOL/ERYTHROMYCIN	BLASTP	480	480	100.00	99.38	480	AAW38464.1	multidrug efflux MFS transporter LmrS	NA	NA
GCA_001298325.2_02494	fosB	FosB/FosD family fosfomycin resistance bacillithiol transferase	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	BLASTP	139	139	100.00	99.28	139	WP_000920239.1	FosB/FosD family fosfomycin resistance bacillithiol transferase	NF000493.1	FosB/FosD family fosfomycin resistance bacillithiol transferase
GCA_001298325.2_02531	dfrG	trimethoprim-resistant dihydrofolate reductase DfrG	core	AMR	AMR	TRIMETHOPRIM	TRIMETHOPRIM	EXACTP	165	165	100.00	100.00	165	WP_000868795.1	trimethoprim-resistant dihydrofolate reductase DfrG	NF000143.1	trimethoprim-resistant dihydrofolate reductase DfrG
GCA_001298325.2_02583	hlgA	bi-component gamma-hemolysin HlgAB subunit A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	321	309	100.00	100.00	309	AUU54669.1	bi-component gamma-hemolysin HlgAB subunit A	NA	NA
GCA_001298325.2_02584	hlgC	bi-component gamma-hemolysin HlgCB subunit C	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	315	315	100.00	97.46	315	CAA57277.1	bi-component gamma-hemolysin HlgCB subunit C	NA	NA
GCA_001298325.2_02585	hlgB	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	325	325	100.00	97.54	325	CAA57278.1	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	NA
GCA_001298325.2_02710	sey	staphylococcal enterotoxin type Y	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	221	221	100.00	99.10	221	BAS21358.1	staphylococcal enterotoxin type Y	NA	NA
GCA_001298325.2_02778	mco	multi-copper oxidase Mco	plus	STRESS	METAL	COPPER	COPPER	BLASTP	477	462	100.00	99.13	462	AAQ17236.1	multi-copper oxidase Mco	NA	NA
GCA_001298325.2_02810	aur	zinc metalloproteinase aureolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	509	509	100.00	99.21	509	EHO93748.1	zinc metalloproteinase aureolysin	NA	NA
GCA_001298325.2_02845	icaC	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	350	350	100.00	100.00	350	AUU58561.1	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	NA	NA