Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_002097595.2_00048	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	PARTIALP	130	260	50.00	99.23	130	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA
GCA_002097595.2_00049	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	BLASTP	243	243	100.00	99.59	243	WP_001072201.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF012222.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)
GCA_002097595.2_00064	merT	mercuric transport protein MerT	plus	STRESS	METAL	MERCURY	MERCURY	EXACTP	128	128	100.00	100.00	128	ADA79992.1	mercuric transport protein MerT	NA	NA
GCA_002097595.2_00065	merA	mercury(II) reductase	plus	STRESS	METAL	MERCURY	MERCURY	EXACTP	547	547	100.00	100.00	547	AAA98245.1	mercury(II) reductase	TIGR02053.1	mercury(II) reductase
GCA_002097595.2_00066	merB	organomercurial lyase MerB	plus	STRESS	METAL	MERCURY	ORGANOMERCURY	EXACTP	216	216	100.00	100.00	216	BAB47641.1	organomercurial lyase MerB	NF033555.1	organomercurial lyase MerB
GCA_002097595.2_00071	tet(K)	tetracycline efflux MFS transporter Tet(K)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	EXACTP	459	459	100.00	100.00	459	WP_000492283.1	tetracycline efflux MFS transporter Tet(K)	NF012183.0	tetracycline efflux MFS transporter Tet(K)
GCA_002097595.2_00080	mecA	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	core	AMR	AMR	BETA-LACTAM	METHICILLIN	BLASTP	668	668	100.00	99.85	668	WP_000721309.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NF000409.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA
GCA_002097595.2_00081	mecR1	beta-lactam sensor/signal transducer MecR1	core	AMR	AMR	BETA-LACTAM	METHICILLIN	EXACTP	585	585	100.00	100.00	585	WP_000952923.1	beta-lactam sensor/signal transducer MecR1	NF033109.1	beta-lactam sensor/signal transducer MecR1
GCA_002097595.2_00082	mecI	mecA-type methicillin resistance repressor MecI	core	AMR	AMR	BETA-LACTAM	METHICILLIN	PARTIALP	67	123	54.47	100.00	67	WP_000369214.1	mecA-type methicillin resistance repressor MecI	NA	NA
GCA_002097595.2_00157	tet(38)	tetracycline efflux MFS transporter Tet(38)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	452	450	100.00	100.00	450	WP_001100289.1	tetracycline efflux MFS transporter Tet(38)	NF012176.0	tetracycline efflux MFS transporter Tet(38)
GCA_002097595.2_00353	mepA	multidrug efflux MATE transporter MepA	plus	AMR	AMR	TETRACYCLINE	TIGECYCLINE	EXACTP	451	451	100.00	100.00	451	AAU95768.1	multidrug efflux MATE transporter MepA	NF000131.1	multidrug efflux MATE transporter MepA
GCA_002097595.2_00392	selX	staphylococcal enterotoxin-like toxin X	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	203	203	100.00	96.55	203	AEI60187.1	staphylococcal enterotoxin-like toxin X	NA	NA
GCA_002097595.2_00419	tet(M)	tetracycline resistance ribosomal protection protein Tet(M)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	EXACTP	639	639	100.00	100.00	639	WP_000691737.1	tetracycline resistance ribosomal protection protein Tet(M)	NF012155.1	tetracycline resistance ribosomal protection protein Tet(M)
GCA_002097595.2_00882	sek	staphylococcal enterotoxin type K	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	242	242	100.00	99.17	242	AAW36439.1	staphylococcal enterotoxin type K	NA	NA
GCA_002097595.2_00883	seq	staphylococcal enterotoxin type Q	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	242	242	100.00	100.00	242	EYN56163.1	staphylococcal enterotoxin type Q	NA	NA
GCA_002097595.2_01622	sel26	staphylococcal enterotoxin type 26	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	250	250	100.00	96.80	250	KAG18833.1	staphylococcal enterotoxin type 26	NA	NA
GCA_002097595.2_01675	erm(A)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE	AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN	BLASTP	243	243	100.00	99.59	243	WP_001072201.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NF012222.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)
GCA_002097595.2_01676	ant(9)-Ia	aminoglycoside nucleotidyltransferase ANT(9)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	SPECTINOMYCIN	PARTIALP	130	260	50.00	99.23	130	WP_000067268.1	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA
GCA_002097595.2_01803	arsB	arsenite efflux transporter membrane subunit ArsB	plus	STRESS	METAL	ARSENIC	ARSENITE	HMM	430	429	100.00	81.35	429	AAA25637.1	arsenite efflux transporter membrane subunit ArsB	NF033877.0	arsenite efflux transporter membrane subunit ArsB
GCA_002097595.2_01846	splE	serine protease SplE	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	238	238	100.00	100.00	238	ABD30999.1	serine protease SplE	NA	NA
GCA_002097595.2_01849	splB	serine protease SplB	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	240	240	100.00	100.00	240	ABD31003.1	serine protease SplB	NA	NA
GCA_002097595.2_01850	splA	serine protease SplA	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	235	235	100.00	100.00	235	ABD31004.1	serine protease SplA	NA	NA
GCA_002097595.2_01860	lukD	bi-component leukocidin LukED subunit D	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	327	327	100.00	94.50	327	CAA73668.1	bi-component leukocidin LukED subunit D	NA	NA
GCA_002097595.2_01861	lukE	bi-component leukocidin LukED subunit E	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	311	311	100.00	99.68	311	RCV70079.1	bi-component leukocidin LukED subunit E	NA	NA
GCA_002097595.2_02088	scn	complement inhibitor SCIN-A	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	116	116	100.00	100.00	116	ADL23798.1	complement inhibitor SCIN-A	NA	NA
GCA_002097595.2_02093	sak	staphylokinase	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	163	163	100.00	100.00	163	CAA24957.1	staphylokinase	NA	NA
GCA_002097595.2_02177	hld	delta-hemolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	44	26	100.00	100.00	26	AGU62139.1	delta-hemolysin	NA	NA
GCA_002097595.2_02229	aac(6')-Ie/aph(2'')-Ia	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN	EXACTP	479	479	100.00	100.00	479	WP_001028144.1	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NF000508.1	aminoglycoside O-phosphotransferase APH(2'')-Ia
GCA_002097595.2_02235	aph(3')-IIIa	aminoglycoside O-phosphotransferase APH(3')-IIIa	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/KANAMYCIN	EXACTP	264	264	100.00	100.00	264	WP_001096887.1	aminoglycoside O-phosphotransferase APH(3')-IIIa	NF033064.0	aminoglycoside O-phosphotransferase APH(3')-IIIa
GCA_002097595.2_02475	lmrS	multidrug efflux MFS transporter LmrS	plus	STRESS	BIOCIDE	MACROLIDE/PHENICOL	CHLORAMPHENICOL/ERYTHROMYCIN	EXACTP	480	480	100.00	100.00	480	AAW38464.1	multidrug efflux MFS transporter LmrS	NA	NA
GCA_002097595.2_02650	fosB	FosB/FosD family fosfomycin resistance bacillithiol transferase	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	EXACTP	139	139	100.00	100.00	139	WP_000920239.1	FosB/FosD family fosfomycin resistance bacillithiol transferase	NF000493.1	FosB/FosD family fosfomycin resistance bacillithiol transferase
GCA_002097595.2_02737	hlgA	bi-component gamma-hemolysin HlgAB subunit A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	321	309	100.00	100.00	309	AUU54669.1	bi-component gamma-hemolysin HlgAB subunit A	NA	NA
GCA_002097595.2_02738	hlgC	bi-component gamma-hemolysin HlgCB subunit C	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	315	315	100.00	97.14	315	CAA57277.1	bi-component gamma-hemolysin HlgCB subunit C	NA	NA
GCA_002097595.2_02739	hlgB	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	325	325	100.00	97.54	325	CAA57278.1	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	NA
GCA_002097595.2_02810	sasG	LPXTG-anchored surface protein SasG	plus	VIRULENCE	VIRULENCE	NA	NA	PARTIALP	1038	1115	61.43	99.42	685	BAF79363.1	LPXTG-anchored surface protein SasG	NA	NA
GCA_002097595.2_02908	blaI	penicillinase repressor BlaI	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	EXACTP	126	126	100.00	100.00	126	WP_001284656.1	penicillinase repressor BlaI	NF000186.1	penicillinase repressor BlaI
GCA_002097595.2_02909	blaR1	beta-lactam sensor/signal transducer BlaR1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTP	585	585	100.00	99.83	585	WP_001096376.1	beta-lactam sensor/signal transducer BlaR1	NF033108.1	beta-lactam sensor/signal transducer BlaR1
GCA_002097595.2_02910	blaPC1	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	281	281	100.00	100.00	281	WP_000733283.1	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NF033139.1	penicillin-hydrolyzing class A beta-lactamase BlaZ
GCA_002097595.2_02978	aur	zinc metalloproteinase aureolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	509	509	100.00	93.71	509	EHO93748.1	zinc metalloproteinase aureolysin	NA	NA
GCA_002097595.2_03013	icaC	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	plus	VIRULENCE	VIRULENCE	NA	NA	PARTIALP	294	350	81.71	98.95	286	AUU58561.1	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	NA	NA