Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_003354665.1_00035	mecA	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	core	AMR	AMR	BETA-LACTAM	METHICILLIN	EXACTP	668	668	100.00	100.00	668	WP_000721309.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NF000409.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA
GCA_003354665.1_00036	mecR1	beta-lactam sensor/signal transducer MecR1	core	AMR	AMR	BETA-LACTAM	METHICILLIN	PARTIALP	328	585	55.56	100.00	325	WP_000952923.1	beta-lactam sensor/signal transducer MecR1	NA	NA
GCA_003354665.1_00051	aph(3')-IIIa	aminoglycoside O-phosphotransferase APH(3')-IIIa	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/KANAMYCIN	EXACTP	264	264	100.00	100.00	264	WP_001096887.1	aminoglycoside O-phosphotransferase APH(3')-IIIa	NF033064.0	aminoglycoside O-phosphotransferase APH(3')-IIIa
GCA_003354665.1_00052	sat4	streptothricin N-acetyltransferase Sat4	core	AMR	AMR	STREPTOTHRICIN	STREPTOTHRICIN	BLASTP	180	180	100.00	99.44	180	WP_000627290.1	streptothricin N-acetyltransferase Sat4	NF000360.1	streptothricin N-acetyltransferase Sat4
GCA_003354665.1_00053	ant(6)-Ia	aminoglycoside nucleotidyltransferase ANT(6)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	EXACTP	302	302	100.00	100.00	302	WP_001255866.1	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NF033084.2	aminoglycoside 6-nucleotidyltransferase
GCA_003354665.1_00061	tet(K)	tetracycline efflux MFS transporter Tet(K)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	459	459	100.00	99.78	459	WP_000492283.1	tetracycline efflux MFS transporter Tet(K)	NF012183.0	tetracycline efflux MFS transporter Tet(K)
GCA_003354665.1_00067	merT	mercuric transport protein MerT	plus	STRESS	METAL	MERCURY	MERCURY	EXACTP	128	128	100.00	100.00	128	ADA79992.1	mercuric transport protein MerT	NA	NA
GCA_003354665.1_00068	merA	mercury(II) reductase	plus	STRESS	METAL	MERCURY	MERCURY	EXACTP	547	547	100.00	100.00	547	AAA98245.1	mercury(II) reductase	TIGR02053.1	mercury(II) reductase
GCA_003354665.1_00069	merB	organomercurial lyase MerB	plus	STRESS	METAL	MERCURY	ORGANOMERCURY	EXACTP	216	216	100.00	100.00	216	BAB47641.1	organomercurial lyase MerB	NF033555.1	organomercurial lyase MerB
GCA_003354665.1_00130	tet(38)	tetracycline efflux MFS transporter Tet(38)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	452	450	100.00	99.78	450	WP_001100300.1	tetracycline efflux MFS transporter Tet(38)	NF012176.0	tetracycline efflux MFS transporter Tet(38)
GCA_003354665.1_00334	mepA	multidrug efflux MATE transporter MepA	plus	AMR	AMR	TETRACYCLINE	TIGECYCLINE	EXACTP	451	451	100.00	100.00	451	AAU95768.1	multidrug efflux MATE transporter MepA	NF000131.1	multidrug efflux MATE transporter MepA
GCA_003354665.1_00373	selX	staphylococcal enterotoxin-like toxin X	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	203	203	100.00	96.55	203	AEI60187.1	staphylococcal enterotoxin-like toxin X	NA	NA
GCA_003354665.1_00840	sek	staphylococcal enterotoxin type K	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	242	242	100.00	100.00	242	AAW36439.1	staphylococcal enterotoxin type K	NA	NA
GCA_003354665.1_00841	seq	staphylococcal enterotoxin type Q	plus	VIRULENCE	VIRULENCE	NA	NA	PARTIALP	149	242	58.68	100.00	142	EYN56163.1	staphylococcal enterotoxin type Q	NA	NA
GCA_003354665.1_00861	seb	staphylococcal enterotoxin type B	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	266	266	100.00	100.00	266	AAA88550.1	staphylococcal enterotoxin type B	NA	NA
GCA_003354665.1_01650	sel26	staphylococcal enterotoxin type 26	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	234	250	93.60	96.15	234	KAG18833.1	staphylococcal enterotoxin type 26	NA	NA
GCA_003354665.1_01823	arsB	arsenite efflux transporter membrane subunit ArsB	plus	STRESS	METAL	ARSENIC	ARSENITE	HMM	430	429	100.00	81.35	429	AAA25637.1	arsenite efflux transporter membrane subunit ArsB	NF033877.0	arsenite efflux transporter membrane subunit ArsB
GCA_003354665.1_01868	splE	serine protease SplE	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	238	238	100.00	100.00	238	ABD30999.1	serine protease SplE	NA	NA
GCA_003354665.1_01871	splB	serine protease SplB	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	240	240	100.00	100.00	240	ABD31003.1	serine protease SplB	NA	NA
GCA_003354665.1_01872	splA	serine protease SplA	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	238	235	100.00	98.74	238	ABD31004.1	serine protease SplA	NA	NA
GCA_003354665.1_01882	lukD	bi-component leukocidin LukED subunit D	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	327	327	100.00	94.19	327	CAA73668.1	bi-component leukocidin LukED subunit D	NA	NA
GCA_003354665.1_01883	lukE	bi-component leukocidin LukED subunit E	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	311	311	100.00	99.68	311	RCV70079.1	bi-component leukocidin LukED subunit E	NA	NA
GCA_003354665.1_02125	hld	delta-hemolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	44	26	100.00	100.00	26	AGU62139.1	delta-hemolysin	NA	NA
GCA_003354665.1_02275	lmrS	multidrug efflux MFS transporter LmrS	plus	STRESS	BIOCIDE	MACROLIDE/PHENICOL	CHLORAMPHENICOL/ERYTHROMYCIN	EXACTP	480	480	100.00	100.00	480	AAW38464.1	multidrug efflux MFS transporter LmrS	NA	NA
GCA_003354665.1_02452	fosB	FosB/FosD family fosfomycin resistance bacillithiol transferase	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	EXACTP	139	139	100.00	100.00	139	WP_000920239.1	FosB/FosD family fosfomycin resistance bacillithiol transferase	NF000493.1	FosB/FosD family fosfomycin resistance bacillithiol transferase
GCA_003354665.1_02539	hlgA	bi-component gamma-hemolysin HlgAB subunit A	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	321	309	100.00	100.00	309	AUU54669.1	bi-component gamma-hemolysin HlgAB subunit A	NA	NA
GCA_003354665.1_02540	hlgC	bi-component gamma-hemolysin HlgCB subunit C	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	315	315	100.00	97.14	315	CAA57277.1	bi-component gamma-hemolysin HlgCB subunit C	NA	NA
GCA_003354665.1_02541	hlgB	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	325	325	100.00	97.54	325	CAA57278.1	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	NA
GCA_003354665.1_02646	aac(6')-Ie/aph(2'')-Ia	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN	EXACTP	479	479	100.00	100.00	479	WP_001028144.1	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NF000508.1	aminoglycoside O-phosphotransferase APH(2'')-Ia
GCA_003354665.1_02770	aur	zinc metalloproteinase aureolysin	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	509	509	100.00	99.21	509	EHO93748.1	zinc metalloproteinase aureolysin	NA	NA
GCA_003354665.1_02790	tet(M)	tetracycline resistance ribosomal protection protein Tet(M)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	639	639	100.00	99.84	639	WP_000691736.1	tetracycline resistance ribosomal protection protein Tet(M)	NF012155.1	tetracycline resistance ribosomal protection protein Tet(M)
GCA_003354665.1_02823	icaC	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	plus	VIRULENCE	VIRULENCE	NA	NA	EXACTP	350	350	100.00	100.00	350	AUU58561.1	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	NA	NA