Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_013357445.1_00548	msr(E)	ABC-F type ribosomal protection protein Msr(E)	core	AMR	AMR	MACROLIDE/STREPTOGRAMIN	AZITHROMYCIN/ERYTHROMYCIN/STREPTOGRAMIN	EXACTP	491	491	100.00	100.00	491	WP_000052512.1	ABC-F type ribosomal protection protein Msr(E)	NF000168.2	Msr family ABC-F type ribosomal protection protein
GCA_013357445.1_00549	mph(E)	Mph(E) family macrolide 2'-phosphotransferase	core	AMR	AMR	MACROLIDE	ERYTHROMYCIN	EXACTP	294	294	100.00	100.00	294	WP_000155092.1	Mph(E) family macrolide 2'-phosphotransferase	NF012158.1	Mph(E) family macrolide 2'-phosphotransferase
GCA_013357445.1_00552	aph(3')-Ia	aminoglycoside O-phosphotransferase APH(3')-Ia	core	AMR	AMR	AMINOGLYCOSIDE	KANAMYCIN	EXACTP	271	271	100.00	100.00	271	WP_000018329.1	aminoglycoside O-phosphotransferase APH(3')-Ia	NF051474.1	aminoglycoside O-phosphotransferase APH(3')-Ia
GCA_013357445.1_00559	qacEdelta1	quaternary ammonium compound efflux SMR transporter QacE delta 1	core	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	ALLELEP	115	115	100.00	100.00	115	WP_000679427.1	quaternary ammonium compound efflux SMR transporter QacE delta 1	NF000276.2	quaternary ammonium compound efflux SMR transporter QacE
GCA_013357445.1_00560	arr-3	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	core	AMR	AMR	RIFAMYCIN	RIFAMYCIN	EXACTP	150	150	100.00	100.00	150	WP_001749986.1	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NF033144.1	NAD(+)--rifampin ADP-ribosyltransferase
GCA_013357445.1_00561	aac(6')-Ib-cr	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr	core	AMR	AMR	AMINOGLYCOSIDE/QUINOLONE	AMIKACIN/KANAMYCIN/QUINOLONE/TOBRAMYCIN	PARTIALP	113	184	51.09	100.00	94	WP_063840321.1	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA
GCA_013357445.1_00573	floR	chloramphenicol/florfenicol efflux MFS transporter FloR	core	AMR	AMR	PHENICOL	CHLORAMPHENICOL/FLORFENICOL	EXACTP	404	404	100.00	100.00	404	WP_000214122.1	chloramphenicol/florfenicol efflux MFS transporter FloR	NF000219.1	chloramphenicol/florfenicol efflux MFS transporter FloR
GCA_013357445.1_00578	aph(4)-Ia	aminoglycoside O-phosphotransferase APH(4)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	HYGROMYCIN	EXACTP	341	341	100.00	100.00	341	WP_000742814.1	aminoglycoside O-phosphotransferase APH(4)-Ia	NF000107.2	aminoglycoside O-phosphotransferase APH(4)-Ia
GCA_013357445.1_00580	aac(3)-IVa	aminoglycoside N-acetyltransferase AAC(3)-IVa	core	AMR	AMR	AMINOGLYCOSIDE	APRAMYCIN/GENTAMICIN/TOBRAMYCIN	PARTIALP	236	258	88.76	100.00	229	WP_001199192.1	aminoglycoside N-acetyltransferase AAC(3)-IVa	NF033081.0	AAC(3)-IV family aminoglycoside N-acetyltransferase
GCA_013357445.1_00583	blaNDM-1	subclass B1 metallo-beta-lactamase NDM-1	core	AMR	AMR	BETA-LACTAM	CARBAPENEM	ALLELEP	270	270	100.00	100.00	270	WP_004201164.1	subclass B1 metallo-beta-lactamase NDM-1	NF000259.2	NDM family subclass B1 metallo-beta-lactamase
GCA_013357445.1_00595	sul1	sulfonamide-resistant dihydropteroate synthase Sul1	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	EXACTP	279	279	100.00	100.00	279	WP_000259031.1	sulfonamide-resistant dihydropteroate synthase Sul1	NF000294.1	sulfonamide-resistant dihydropteroate synthase Sul1
GCA_013357445.1_00596	qacEdelta1	quaternary ammonium compound efflux SMR transporter QacE delta 1	core	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	ALLELEP	115	115	100.00	100.00	115	WP_000679427.1	quaternary ammonium compound efflux SMR transporter QacE delta 1	NF000276.2	quaternary ammonium compound efflux SMR transporter QacE
GCA_013357445.1_00597	arr-3	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	core	AMR	AMR	RIFAMYCIN	RIFAMYCIN	EXACTP	150	150	100.00	100.00	150	WP_001749986.1	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NF033144.1	NAD(+)--rifampin ADP-ribosyltransferase
GCA_013357445.1_00598	aac(6')-Ib-cr	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr	core	AMR	AMR	AMINOGLYCOSIDE/QUINOLONE	AMIKACIN/KANAMYCIN/QUINOLONE/TOBRAMYCIN	BLASTP	199	184	100.00	100.00	184	WP_063840321.1	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NF033074.0	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase
GCA_013357445.1_00609	floR	chloramphenicol/florfenicol efflux MFS transporter FloR	core	AMR	AMR	PHENICOL	CHLORAMPHENICOL/FLORFENICOL	PARTIALP	346	404	85.64	100.00	346	WP_000214122.1	chloramphenicol/florfenicol efflux MFS transporter FloR	NF000219.1	chloramphenicol/florfenicol efflux MFS transporter FloR
GCA_013357445.1_00616	aph(4)-Ia	aminoglycoside O-phosphotransferase APH(4)-Ia	core	AMR	AMR	AMINOGLYCOSIDE	HYGROMYCIN	PARTIALP	178	341	51.91	100.00	177	WP_000742814.1	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA
GCA_013357445.1_00618	aac(3)-IVa	aminoglycoside N-acetyltransferase AAC(3)-IVa	core	AMR	AMR	AMINOGLYCOSIDE	APRAMYCIN/GENTAMICIN/TOBRAMYCIN	EXACTP	258	258	100.00	100.00	258	WP_001199192.1	aminoglycoside N-acetyltransferase AAC(3)-IVa	NF033081.0	AAC(3)-IV family aminoglycoside N-acetyltransferase
GCA_013357445.1_00622	blaNDM-1	subclass B1 metallo-beta-lactamase NDM-1	core	AMR	AMR	BETA-LACTAM	CARBAPENEM	ALLELEP	270	270	100.00	100.00	270	WP_004201164.1	subclass B1 metallo-beta-lactamase NDM-1	NF000259.2	NDM family subclass B1 metallo-beta-lactamase
GCA_013357445.1_00634	sul1	sulfonamide-resistant dihydropteroate synthase Sul1	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	PARTIALP	238	279	85.30	99.58	238	WP_000259018.1	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA
GCA_013357445.1_00635	qacEdelta1	quaternary ammonium compound efflux SMR transporter QacE delta 1	core	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	ALLELEP	115	115	100.00	100.00	115	WP_000679427.1	quaternary ammonium compound efflux SMR transporter QacE delta 1	NF000276.2	quaternary ammonium compound efflux SMR transporter QacE
GCA_013357445.1_00636	aadA1	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	BLASTP	267	263	100.00	100.00	263	WP_001206316.1	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NF033126.1	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1
GCA_013357445.1_00637	dfrA1	trimethoprim-resistant dihydrofolate reductase DfrA1	core	AMR	AMR	TRIMETHOPRIM	TRIMETHOPRIM	EXACTP	157	157	100.00	100.00	157	WP_000777554.1	trimethoprim-resistant dihydrofolate reductase DfrA1	NF000330.1	trimethoprim-resistant dihydrofolate reductase DfrA
GCA_013357445.1_00638	lnu(F)	lincosamide nucleotidyltransferase Lnu(F)	core	AMR	AMR	LINCOSAMIDE	LINCOSAMIDE	EXACTP	281	281	100.00	100.00	281	WP_070342364.1	lincosamide nucleotidyltransferase Lnu(F)	NF000119.1	lincosamide nucleotidyltransferase Lnu(F)
GCA_013357445.1_01918	catA	type A-4 chloramphenicol O-acetyltransferase	core	AMR	AMR	PHENICOL	CHLORAMPHENICOL	BLASTP	217	217	99.08	91.63	215	WP_063843208.1	type A-4 chloramphenicol O-acetyltransferase	NF000491.1	type A chloramphenicol O-acetyltransferase
GCA_013357445.1_03722	terD	tellurium resistance membrane protein TerD	plus	STRESS	METAL	TELLURIUM	TELLURIUM	BLASTP	192	192	100.00	92.19	192	AAA98292.1	tellurium resistance membrane protein TerD	NA	NA
GCA_013357445.1_03726	terZ	tellurium resistance-associated protein TerZ	plus	STRESS	METAL	TELLURIUM	TELLURIUM	BLASTP	194	194	100.00	99.48	194	AAD47284.1	tellurium resistance-associated protein TerZ	NA	NA
GCA_013357445.1_03737	tet(J)	tetracycline efflux MFS transporter Tet(J)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTP	398	398	99.75	99.24	397	WP_004245621.1	tetracycline efflux MFS transporter Tet(J)	NF012194.0	tetracycline efflux MFS transporter Tet(J)