The 1 gene cluster 'bins' that were sotred in the anvi'o pan database for 'Dermabacter hominis homd HMT 354' under the collection name "DEFAULT", describe 3,311 gene clusters with 46,781 genes that were identified in 23 genomes.

Basics

Here are some of the details about the pan database, and genomes storage.
Pan DB for Dermabacter hominis homd HMT 354 w/ 23 samples.
Key Value
Created on 2025-12-13 02:14:48
Version 16
Number of genes 46,781
Number of gene clusters 3,311
Partial genes excluded No
Minbit parameter 0.5
Gene cluster min occurrence parameter 1
MCL inflation parameter 10.0
NCBI blastp or DIAMOND? NCBI blastp
Additional parameters for sequence search
Number of genomes used 23
Items aditional data keys num_genomes_gene_cluster_has_hits, num_genes_in_gene_cluster, max_num_paralogs, SCG, functional_homogeneity_index, geometric_homogeneity_index, combined_homogeneity_index
Genomes storage
Key Value
Created on Storage DB knows nothing :(
Version 7
Number of genomes described 23
Functional annotation Available
Functional annotation sources COG20_PATHWAY, Pfam, KEGG_Module, KEGG_BRITE, COG20_CATEGORY, KEGG_Class, CAZyme, KOfam, COG20_FUNCTION
These are the list of genomes used in this pan database: Dermabacter_hominis_str_1368_id_GCA_000775415_1, Dermabacter_hominis_str_32T_id_GCA_002443115_1, Dermabacter_hominis_str_7C5DOzIQju_bin_2_MAG_id_GCA_946221715_1, Dermabacter_hominis_str_FDAARGOS_1555_id_GCA_020736445_1, Dermabacter_hominis_str_HFH0086_id_GCA_000413375_1, Dermabacter_hominis_str_HMSC06F07_id_GCA_001807345_1, Dermabacter_hominis_str_HMSC08H10_id_GCA_001807585_1, Dermabacter_hominis_str_MGYG_HGUT_01448_id_GCA_902381725_1, Dermabacter_hominis_str_NBRC_106157_id_GCA_001570785_1, Dermabacter_hominis_str_SRR17635703_bin_21_metaWRAP_v1_3_MAG_id_GCA_947252715_1, Dermabacter_hominis_str_UMB0490_id_GCA_002847685_2, Dermabacter_hominis_str_UMB6473_AN360BR_id_GCA_030234045_1, Dermabacter_hominis_str_p3_SID1639_id_GCA_025151115_1, Dermabacter_hominis_str_p3_SID1644_id_GCA_025151025_1, Dermabacter_hominis_str_p3_SID1646_id_GCA_025150985_1, Dermabacter_hominis_str_p3_SID1680_id_GCA_025150875_1, Dermabacter_hominis_str_p3_SID1727_id_GCA_025149545_1, Dermabacter_hominis_str_p3_SID1823_id_GCA_025149405_1, Dermabacter_hominis_str_p3_SID207_id_GCA_025149065_1, Dermabacter_hominis_str_p3_SID57_id_GCA_025147145_1, Dermabacter_hominis_str_p3_SID715_id_GCA_025146485_1, Dermabacter_hominis_str_p3_SID877_id_GCA_025145325_1, Dermabacter_hominis_str_p3_SID955_id_GCA_025144805_1

Summary files for gene clusters

This was a full summary (i.e., the `--quick` flag has not been used), hence the gene clusters summary file is not succint by any means.

The summary file: Dermabacter_hominis_homd_HMT_354_gene_clusters_summary.txt.gz

Misc Data

For layers

The directory misc data layers contains TAB-delimited files for additional data stored under the following data group names for each sample/layer found in the merged database: default.

The default data group, which often is added by anvi'o automatically and contains important information, contained these keys: total_length, gc_content, percent_completion, percent_redundancy, num_genes, avg_gene_length, num_genes_per_kb, singleton_gene_clusters, num_gene_clusters.

For items

The directory misc data items contains TAB-delimited files for additional data stored under the following data group names for each item found in the merged database: default.