| Key | Value |
|---|---|
| Created on | 2025-12-12 18:02:59 |
| Version | 16 |
| Number of genes | 5,659 |
| Number of gene clusters | 2,148 |
| Partial genes excluded | No |
| Minbit parameter | 0.5 |
| Gene cluster min occurrence parameter | 1 |
| MCL inflation parameter | 10.0 |
| NCBI blastp or DIAMOND? | NCBI blastp |
| Additional parameters for sequence search | |
| Number of genomes used | 3 |
| Items aditional data keys | num_genomes_gene_cluster_has_hits, num_genes_in_gene_cluster, max_num_paralogs, SCG, functional_homogeneity_index, geometric_homogeneity_index, combined_homogeneity_index |
| Key | Value |
|---|---|
| Created on | Storage DB knows nothing :( |
| Version | 7 |
| Number of genomes described | 3 |
| Functional annotation | Available |
| Functional annotation sources | COG20_FUNCTION, KEGG_BRITE, KOfam, KEGG_Class, COG20_CATEGORY, COG20_PATHWAY, CAZyme, Pfam, KEGG_Module |
This was a full summary (i.e., the `--quick` flag has not been used), hence the gene clusters summary file is not succint by any means.
The summary file: Gemella_haemolysans_clade_434_homd_HMT_434_gene_clusters_summary.txt.gz
For layers
The directory misc data layers contains TAB-delimited files for additional data stored under the following data group names for each sample/layer found in the merged database: default.
The default data group, which often is added by anvi'o automatically and contains important information, contained these keys: total_length, gc_content, percent_completion, percent_redundancy, num_genes, avg_gene_length, num_genes_per_kb, singleton_gene_clusters, num_gene_clusters.
For items
The directory misc data items contains TAB-delimited files for additional data stored under the following data group names for each item found in the merged database: default.