OTU Test-Statistic P FDR_P Bonferroni_P 9_mean 18_mean 26_mean 3_mean 16_mean taxonomy SPN7 nan nan 1.0 nan 1083.66666667 363.523809524 203.545454545 3.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Dorea; s__formicigenerans_nov_97.030% SPPN2 nan nan 1.0 nan 6.77777777778 6.90476190476 5.72727272727 0.571428571429 25.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__multigenus; s__multispecies_sppn2_2_nov_95.297% SPPN6 nan nan 1.0 nan 0.0 0.0 0.0 40.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_sppn6_3_nov_86.543% SPN24 nan nan 1.0 nan 2.77777777778 6.80952380952 9.27272727273 0.0 1.0 k__Bacteria; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cytophagaceae; g__Cytophaga; s__xylanolytica_nov_83.803% SPN25 nan nan 1.0 nan 11.1111111111 48.0476190476 36.9090909091 0.0 44.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Haemophilus; s__pittmaniae_HMT_946_nov_90.443% SPN36 nan nan 1.0 nan 0.0 0.0 0.0 38.2857142857 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__putidum_HMT_743_nov_95.814% SPN47 nan nan 1.0 nan 0.0 0.0 0.0 30.2857142857 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Haemophilus; s__parainfluenzae_HMT_718_nov_97.436% SPPN13 nan nan 1.0 nan 0.0 0.0 0.0 29.8571428571 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__NA; g__Tepidimonas; s__multispecies_sppn13_2_nov_97.209% SPPN19 nan nan 1.0 nan 0.0 0.0 0.0 24.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_sppn19_2_nov_88.837% SPPN22 nan nan 1.0 nan 0.0 0.0 0.0 22.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_sppn22_17_nov_95.128% SPN87 nan nan 1.0 nan 642.333333333 544.80952381 713.454545455 34.8571428571 1633.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIVa]; g__Lacnoclostridium; s__hathewayi_nov_95.320% SPN103 nan nan 1.0 nan 480.111111111 305.571428571 274.909090909 26.0 519.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Lachnoclostridium; s__pacaense_nov_96.782% SPN104 nan nan 1.0 nan 0.0 0.0 0.0 21.1428571429 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__sp._HMT_237_nov_96.512% SPPN26 nan nan 1.0 nan 104.444444444 22.7619047619 7.36363636364 0.285714285714 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__multigenus; s__multispecies_sppn26_2_nov_97.778% SPN112 nan nan 1.0 nan 1.33333333333 5.57142857143 1.09090909091 0.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Oscillospiraceae; g__Oscillibacter; s__valericigenes_nov_96.059% SPN123 nan nan 1.0 nan 0.0 0.0 0.0 19.8571428571 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__denticola_HMT_584_nov_93.953% SPN166 nan nan 1.0 nan 0.0 0.0 0.0 15.7142857143 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Oxalophagus; s__oxalicus_nov_88.152% SPN177 nan nan 1.0 nan 0.0 2.80952380952 0.0 6.57142857143 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Dysgonamonadaceae; g__Proteiniphilum; s__acetatigenes_nov_91.822% SPN179 nan nan 1.0 nan 0.0 56.380952381 38.0 0.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Lachnoclostridium; s__saccharolyticum_nov_95.792% SPN189 nan nan 1.0 nan 0.0 3.38095238095 2.81818181818 0.0 0.0 k__Bacteria; p__Actinobacteria; c__Coriobacteriia; o__Eggerthellales; f__Eggerthellaceae; g__Paraeggerthella; s__hongkongensis_nov_92.157% SPN201 nan nan 1.0 nan 119.444444444 138.857142857 137.818181818 25.5714285714 601.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Lachnoclostridium; s__populeti_nov_94.059% SPPN48 nan nan 1.0 nan 60.3333333333 29.1904761905 8.0 3.57142857143 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__multifamily; g__Lacnoclostridium; s__scindens SPN296 nan nan 1.0 nan 0.0 161.80952381 114.090909091 0.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Blautia; s__faecis_nov_93.873% SPN308 nan nan 1.0 nan 27.8888888889 23.0 9.81818181818 0.142857142857 23.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Corynebacteriaceae; g__Corynebacterium; s__mastitidis_HMT_328_nov_84.541% SPN390 nan nan 1.0 nan 146.111111111 79.1904761905 95.3636363636 17.1428571429 302.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Acetatifactor; s__muris_nov_94.307% SPPN87 nan nan 1.0 nan 44.2222222222 11.8095238095 7.63636363636 0.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__multigenus; s__multispecies_sppn87_2_nov_95.556% SPN404 nan nan 1.0 nan 130.888888889 72.7619047619 99.8181818182 6.71428571429 392.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Oscillospiraceae; g__Oscillibacter; s__ruminantium_nov_95.567% SPPN93 nan nan 1.0 nan 246.0 66.0 25.1818181818 3.42857142857 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Lachnoclostridium; s__multispecies_sppn93_2_nov_94.802% SPPN94 nan nan 1.0 nan 226.777777778 58.8571428571 27.6363636364 6.14285714286 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__multifamily; g__Pseudoflavonifractor; s__capillosus SPN432 nan nan 1.0 nan 5.0 13.2857142857 15.9090909091 0.0 19.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Corynebacteriaceae; g__Corynebacterium; s__mastitidis_HMT_328_nov_97.101% SPN443 nan nan 1.0 nan 9.66666666667 8.0 14.7272727273 0.0 14.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Mannheimia; s__caviae_nov_90.443% SPN451 nan nan 1.0 nan 2.22222222222 6.95238095238 13.1818181818 0.0 18.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Bisgaardia; s__hudsonensis_nov_86.343% SPPN104 nan nan 1.0 nan 0.0 0.619047619048 0.272727272727 41.7142857143 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__multispecies_sppn104_2_nov_96.934% SP1 nan nan 1.0 nan 4.44444444444 3.95238095238 2.72727272727 42.8571428571 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIV]; g__Oribacterium; s__sinus_HMT_457 SP100 nan nan 1.0 nan 0.0 0.47619047619 31.0 0.0 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Corynebacteriaceae; g__Corynebacterium; s__jeikeium_HMT_047 SP102 nan nan 1.0 nan 0.0 0.0 0.0 534.714285714 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__gordonii_HMT_622 SPP8 nan nan 1.0 nan 0.0 0.0 0.0 227.428571429 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp8_17 SPP15 nan nan 1.0 nan 0.0 0.238095238095 0.0 43.7142857143 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__multispecies_spp15_3 SPP16 nan nan 1.0 nan 5.0 6.80952380952 10.0909090909 147.714285714 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__multispecies_spp16_2 SP104 nan nan 1.0 nan 0.0 0.0 0.0 694.0 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Veillonella; s__atypica_HMT_524 SPP21 nan nan 1.0 nan 0.0 0.0952380952381 0.181818181818 173.285714286 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp21_4 SP108 nan nan 1.0 nan 0.0 0.190476190476 2.90909090909 231.428571429 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__graevenitzii_HMT_866 SP109 nan nan 1.0 nan 0.111111111111 0.0952380952381 0.0 45.7142857143 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__sp._HMT_203 SPP35 nan nan 1.0 nan 0.444444444444 1.90476190476 2.72727272727 160.571428571 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__multispecies_spp35_3 SP11 nan nan 1.0 nan 15.5555555556 19.5714285714 38.1818181818 3197.28571429 107.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Micrococcaceae; g__Rothia; s__mucilaginosa_HMT_681 SP110 nan nan 1.0 nan 0.0 1.09523809524 1.45454545455 52.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIV]; g__Lachnoanaerobaculum; s__orale_HMT_082 SP111 nan nan 1.0 nan 1.44444444444 1.14285714286 2.09090909091 154.285714286 1.0 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__concisus_HMT_575 SPP37 nan nan 1.0 nan 0.0 0.0 0.0 188.428571429 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp37_4 SPP41 nan nan 1.0 nan 0.0 0.0 0.0 203.428571429 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp41_3 SPP42 nan nan 1.0 nan 0.0 0.0 0.0 34.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp42_5 SP116 nan nan 1.0 nan 0.0 0.0 0.0 102.142857143 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__sp._HMT_231 SP117 nan nan 1.0 nan 0.222222222222 0.0 0.0 135.857142857 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae_[XI]; g__Peptostreptococcaceae_[XI][G-9]; s__brachy_HMT_557 SP118 nan nan 1.0 nan 0.666666666667 1.57142857143 3.27272727273 27.2857142857 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__gingivalis_HMT_619 SP119 nan nan 1.0 nan 0.0 0.0 0.0 24.8571428571 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__peroris_HMT_728 SPP46 nan nan 1.0 nan 0.0 0.0 0.0 336.142857143 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp46_2 SPP47 nan nan 1.0 nan 0.0 0.0 0.0 14.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Veillonellaceae_[G-1]; s__multispecies_spp47_2 SP122 nan nan 1.0 nan 0.0 0.0 0.0 17.7142857143 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Haemophilus; s__sputorum_HMT_944 SP123 nan nan 1.0 nan 2.22222222222 0.809523809524 3.54545454545 260.142857143 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__sp._HMT_306 SPP51 nan nan 1.0 nan 0.0 0.0 0.0 46.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Veillonella; s__multispecies_spp51_2 SP13 nan nan 1.0 nan 0.0 0.0 0.0 185.142857143 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Veillonella; s__parvula_HMT_161 SP131 nan nan 1.0 nan 0.0 0.0 0.0 70.0 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Selenomonadales; f__Selenomonadaceae; g__Selenomonas; s__noxia_HMT_130 SP132 nan nan 1.0 nan 0.0 0.0 0.0 23.8571428571 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Neisseriales; f__Neisseriaceae; g__Neisseria; s__subflava_HMT_476 SP134 nan nan 1.0 nan 0.0 0.0 0.363636363636 105.428571429 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Alloprevotella; s__tannerae_HMT_466 SP135 nan nan 1.0 nan 0.0 0.0 0.0 218.0 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Gemellaceae; g__Gemella; s__sanguinis_HMT_757 SP136 nan nan 1.0 nan 0.0 0.333333333333 0.454545454545 30.4285714286 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__pneumoniae_HMT_731 SPP57 nan nan 1.0 nan 0.0 0.285714285714 0.0909090909091 17.8571428571 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__multispecies_spp57_2 SP137 nan nan 1.0 nan 0.0 0.190476190476 0.0 37.5714285714 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Scardovia; s__wiggsiae_HMT_195 SP138 nan nan 1.0 nan 0.0 0.0 0.0 16.0 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__sp._HMT_951 SPP61 nan nan 1.0 nan 0.0 0.0 0.0 545.142857143 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Veillonella; s__multispecies_spp61_2 SP14 nan nan 1.0 nan 2.0 3.90476190476 8.81818181818 264.142857143 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__periodonticum_HMT_201 SP141 nan nan 1.0 nan 1.0 0.142857142857 0.181818181818 55.8571428571 0.0 k__Bacteria; p__Saccharibacteria_(TM7); c__Saccharibacteria_(TM7)_[C-1]; o__Saccharibacteria_(TM7)_[O-1]; f__Saccharibacteria_(TM7)_[F-1]; g__Saccharibacteria_(TM7)_[G-1]; s__bacterium_HMT_346 SP142 nan nan 1.0 nan 0.222222222222 0.190476190476 0.181818181818 26.7142857143 0.0 k__Bacteria; p__Saccharibacteria_(TM7); c__Saccharibacteria_(TM7)_[C-1]; o__Saccharibacteria_(TM7)_[O-1]; f__Saccharibacteria_(TM7)_[F-1]; g__Saccharibacteria_(TM7)_[G-1]; s__bacterium_HMT_349 SP143 nan nan 1.0 nan 0.777777777778 0.047619047619 0.181818181818 79.7142857143 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Corynebacteriaceae; g__Corynebacterium; s__durum_HMT_595 SP144 nan nan 1.0 nan 3.55555555556 1.52380952381 4.45454545455 381.285714286 1.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__salivae_HMT_307 SP145 nan nan 1.0 nan 0.222222222222 0.0952380952381 0.0 65.5714285714 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidales_[F-2]; g__Bacteroidales_[G-2]; s__sp._HMT_274 SP146 nan nan 1.0 nan 0.555555555556 0.380952380952 0.363636363636 180.571428571 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__wadei_HMT_222 SP147 nan nan 1.0 nan 0.0 0.0 0.0 243.428571429 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__anginosus_HMT_543 SPP64 nan nan 1.0 nan 0.0 0.0 0.0 27.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp64_2 SPP66 nan nan 1.0 nan 0.0 0.0 0.0 281.857142857 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Neisseriales; f__Neisseriaceae; g__Neisseria; s__multispecies_spp66_4 SP149 nan nan 1.0 nan 0.0 0.0 0.0 124.142857143 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Neisseriales; f__Neisseriaceae; g__Neisseria; s__mucosa_HMT_682 SP15 nan nan 1.0 nan 0.666666666667 0.0 0.0 32.1428571429 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteria; o__Fusobacteria_[O]; f__Fusobacteria_[F]; g__Fusobacteria_[G-1]; s__sp._HMT_A71 SP152 nan nan 1.0 nan 0.0 44.380952381 60.8181818182 0.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Christensenellaceae; g__Christensenella; s__timonensis SP153 nan nan 1.0 nan 0.0 0.142857142857 0.0 65.1428571429 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__veroralis_HMT_572 SPP71 nan nan 1.0 nan 0.111111111111 0.0 0.0 15.4285714286 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__multispecies_spp71_2 SP154 nan nan 1.0 nan 0.222222222222 0.047619047619 0.0 28.1428571429 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__sp._HMT_180 SPP72 nan nan 1.0 nan 0.666666666667 0.047619047619 0.818181818182 45.8571428571 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__multispecies_spp72_2 SPP73 nan nan 1.0 nan 0.222222222222 0.0 0.0 47.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIV]; g__Oribacterium; s__multispecies_spp73_2 SP158 nan nan 1.0 nan 0.111111111111 0.047619047619 0.0909090909091 26.7142857143 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__nucleatum_subsp._vincentii_HMT_200 SPP76 nan nan 1.0 nan 0.111111111111 0.0 0.0909090909091 32.2857142857 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp76_5 SPP81 nan nan 1.0 nan 0.0 0.0 0.0 20.0 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp81_4 SPP82 nan nan 1.0 nan 0.888888888889 0.047619047619 0.272727272727 94.1428571429 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp82_2 SPP83 nan nan 1.0 nan 0.222222222222 0.0952380952381 0.0 52.4285714286 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp83_3 SPP84 nan nan 1.0 nan 0.111111111111 0.0952380952381 0.0 117.857142857 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp84_2 SP159 nan nan 1.0 nan 0.0 0.0 0.0 26.2857142857 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__nucleatum_subsp._animalis_HMT_420 SPP85 nan nan 1.0 nan 0.111111111111 0.047619047619 0.0 18.1428571429 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp85_3 SPP87 nan nan 1.0 nan 0.555555555556 0.047619047619 0.0909090909091 53.8571428571 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp87_2 SPP88 nan nan 1.0 nan 0.0 0.0 0.0 28.8571428571 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp88_3 SPP91 nan nan 1.0 nan 0.0 0.0 0.0 20.1428571429 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp91_3 SPP95 nan nan 1.0 nan 0.0 0.0 0.0 373.857142857 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp95_2 SP164 nan nan 1.0 nan 1.22222222222 1.47619047619 1.09090909091 89.2857142857 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__sp._HMT_314 SPP97 nan nan 1.0 nan 0.0 0.0 0.0 21.8571428571 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Haemophilus; s__multispecies_spp97_2 SP167 nan nan 1.0 nan 1.55555555556 2.85714285714 6.36363636364 125.142857143 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Alloprevotella; s__sp._HMT_308 SP168 nan nan 1.0 nan 0.0 0.0 0.0 21.2857142857 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__sp._HMT_G62 SP169 nan nan 1.0 nan 0.0 0.0 0.0 40.8571428571 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Dialister; s__invisus_HMT_118 SPP102 nan nan 1.0 nan 0.0 0.0 0.0 6937.0 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp102_16 SPP104 nan nan 1.0 nan 0.0 0.0 0.0 273.142857143 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp104_17 SP170 nan nan 1.0 nan 0.0 0.666666666667 2.72727272727 31.2857142857 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIV]; g__Oribacterium; s__asaccharolyticum_HMT_108 SP171 nan nan 1.0 nan 271.111111111 66.3333333333 30.8181818182 2.28571428571 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Faecalicatena; s__orotica SP172 nan nan 1.0 nan 0.222222222222 0.047619047619 0.272727272727 61.4285714286 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__odontolyticus_HMT_701 SPP106 nan nan 1.0 nan 4.77777777778 1.42857142857 8.45454545455 18.1428571429 2.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__multispecies_spp106_2 SP174 nan nan 1.0 nan 0.0 0.0 0.0 24.1428571429 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__sp._HMT_472 SP175 nan nan 1.0 nan 0.0 0.142857142857 0.636363636364 47.5714285714 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__sp._HMT_215 SP177 nan nan 1.0 nan 0.0 5.95238095238 0.0909090909091 0.0 0.0 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__changbaiensis SPP107 nan nan 1.0 nan 0.0 0.0 0.0 81.7142857143 0.0 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__multispecies_spp107_5 SP183 nan nan 1.0 nan 0.666666666667 0.0952380952381 0.0 14.1428571429 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__sp._HMT_225 SP184 nan nan 1.0 nan 0.0 0.0 0.0 88.8571428571 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__NA; g__Gemella; s__parahaemolysans SP185 nan nan 1.0 nan 0.0 0.142857142857 0.0909090909091 87.8571428571 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIV]; g__Stomatobaculum; s__longum_HMT_419 SP186 nan nan 1.0 nan 0.0 0.0 0.0 17.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Gemellaceae; g__Gemella; s__morbillorum_HMT_046 SPP110 nan nan 1.0 nan 0.0 0.0 0.0 68.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Gemella; s__multispecies_spp110_2 SP188 nan nan 1.0 nan 0.0 0.047619047619 0.0909090909091 710.428571429 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Muribacter; s__muris SP189 nan nan 1.0 nan 0.0 0.0 0.0 20.5714285714 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__hwasookii_HMT_953 SP190 nan nan 1.0 nan 0.0 0.0 0.0 26.4285714286 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__vincentii_HMT_029 SP191 nan nan 1.0 nan 0.111111111111 1.19047619048 1.09090909091 55.8571428571 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Rodentibacter; s__pneumotropicus SP192 nan nan 1.0 nan 23.5555555556 0.0952380952381 0.818181818182 0.0 0.0 k__Plantae; p__Angiosperms; c__Monocots; o__Poales; f__Poaceae; g__Triticum; s__aestivum_HMT_D31 SP195 nan nan 1.0 nan 0.0 0.0 0.0 48.7142857143 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__Peptococcus; s__sp._HMT_167 SP196 nan nan 1.0 nan 1.11111111111 0.904761904762 2.54545454545 57.4285714286 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__nanceiensis_HMT_299 SP197 nan nan 1.0 nan 0.0 0.047619047619 0.0 47.1428571429 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Tannerella; s__forsythia_HMT_613 SP198 nan nan 1.0 nan 0.0 0.0 0.0 54.0 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Neisseriales; f__Neisseriaceae; g__Neisseria; s__elongata_HMT_598 SPP112 nan nan 1.0 nan 0.0 0.0 0.0 17.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp112_5 SPP114 nan nan 1.0 nan 0.0 0.0 0.0 649.285714286 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp114_3 SPP115 nan nan 1.0 nan 0.0 0.0 0.0 14.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp115_4 SPP116 nan nan 1.0 nan 0.0 0.0 0.0 16.8571428571 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp116_5 SPP120 nan nan 1.0 nan 0.0 0.0 0.0 17.0 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp120_4 SP2 nan nan 1.0 nan 0.0 0.0 0.0 245.714285714 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__guguanensis SP201 nan nan 1.0 nan 3.0 1.80952380952 3.81818181818 104.285714286 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__pasteri_HMT_279 SP203 nan nan 1.0 nan 0.0 0.0 0.0 124.0 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__maltophilum_HMT_664 SP204 nan nan 1.0 nan 0.0 0.0 0.0 342.142857143 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__ventriculi SP205 nan nan 1.0 nan 0.0 0.0 0.0 21.4285714286 0.0 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Novosphingobium; s__chloroacetimidivorans SP206 nan nan 1.0 nan 1.55555555556 0.285714285714 0.181818181818 44.7142857143 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__sp._HMT_498 SP207 nan nan 1.0 nan 0.222222222222 0.190476190476 0.0909090909091 75.5714285714 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__oris_HMT_311 SP208 nan nan 1.0 nan 0.222222222222 0.190476190476 0.272727272727 89.1428571429 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__sp._HMT_172 SP210 nan nan 1.0 nan 4.77777777778 6.42857142857 28.7272727273 0.0 2.0 k__Bacteria; p__Bacteroidetes; c__Chitinophagia; o__Chitinophagales; f__Chitinophagaceae; g__Vibrionimonas; s__magnilacihabitans SP214 nan nan 1.0 nan 0.0 0.0 0.0 55.5714285714 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Haemophilus; s__haemolyticus_HMT_851 SPP122 nan nan 1.0 nan 0.0 0.0 0.0 19.0 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Haemophilus; s__multispecies_spp122_2 SP216 nan nan 1.0 nan 0.444444444444 0.333333333333 0.363636363636 52.1428571429 0.0 k__Bacteria; p__Saccharibacteria_(TM7); c__Saccharibacteria_(TM7)_[C-1]; o__Saccharibacteria_(TM7)_[O-1]; f__Saccharibacteria_(TM7)_[F-1]; g__Saccharibacteria_(TM7)_[G-1]; s__bacterium_HMT_352 SP217 nan nan 1.0 nan 0.0 0.0 0.0 116.714285714 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Aerococcaceae; g__Abiotrophia; s__defectiva_HMT_389 SP218 nan nan 1.0 nan 0.0 0.0 0.0 177.285714286 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiales_[F]; g__Clostridiales_[G]; s__sp._HMT_G74 SP220 nan nan 1.0 nan 0.0 0.0 0.0 19.8571428571 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__scopos_HMT_885 SP221 nan nan 1.0 nan 0.0 0.0 0.0 22.5714285714 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__sp._HMT_237 SP224 nan nan 1.0 nan 0.0 0.0 0.0 44.7142857143 0.0 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Caulobacterales; f__Caulobacteraceae; g__Brevundimonas; s__terrae SP225 nan nan 1.0 nan 0.0 0.0952380952381 0.0 22.5714285714 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__sp._HMT_223 SP228 nan nan 1.0 nan 0.0 0.0 0.0 136.571428571 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Megasphaera; s__micronuciformis_HMT_122 SP229 nan nan 1.0 nan 0.555555555556 0.428571428571 0.363636363636 34.2857142857 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Corynebacteriales_[F-1]; g__Lawsonella; s__clevelandensis_HMT_173 SP231 nan nan 1.0 nan 0.111111111111 0.0 0.0 18.4285714286 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__sp._HMT_448 SP233 nan nan 1.0 nan 0.0 0.0 0.0909090909091 59.4285714286 0.0 k__Bacteria; p__Synergistetes; c__Synergistia; o__Synergistales; f__Synergistaceae; g__Fretibacterium; s__sp._HMT_359 SPP124 nan nan 1.0 nan 0.0 0.380952380952 0.0 19.5714285714 0.0 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Caulobacterales; f__Caulobacteraceae; g__Caulobacter; s__multispecies_spp124_4 SP240 nan nan 1.0 nan 3.0 0.571428571429 0.0909090909091 161.857142857 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__shahii_HMT_214 SP241 nan nan 1.0 nan 0.111111111111 0.619047619048 0.272727272727 56.7142857143 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__viscosus_HMT_688 SP244 nan nan 1.0 nan 0.222222222222 0.0952380952381 0.0 99.2857142857 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptoniphilaceae; g__Parvimonas; s__micra_HMT_111 SP245 nan nan 1.0 nan 0.0 0.0 0.181818181818 102.714285714 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__endodontalis_HMT_273 SP246 nan nan 1.0 nan 1.0 0.0 0.272727272727 23.8571428571 0.0 k__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Capnocytophaga; s__gingivalis_HMT_337 SP247 nan nan 1.0 nan 0.333333333333 0.0 0.0 35.1428571429 0.0 k__Bacteria; p__Actinobacteria; c__Coriobacteriia; o__Coriobacteriales; f__Atopobiaceae; g__Olsenella; s__sp._HMT_807 SP248 nan nan 1.0 nan 0.0 0.0 0.0 18.2857142857 0.0 k__Bacteria; p__Actinobacteria; c__Coriobacteriia; o__Coriobacteriales; f__Coriobacteriaceae; g__Atopobium; s__rimae_HMT_750 SP249 nan nan 1.0 nan 0.0 0.0 0.0 18.1428571429 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cardiobacteriales; f__Cardiobacteriaceae; g__Cardiobacterium; s__hominis_HMT_633 SPP127 nan nan 1.0 nan 0.0 0.142857142857 0.0 18.7142857143 0.0 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__multispecies_spp127_2 SPP128 nan nan 1.0 nan 0.0 0.0 0.0 34.5714285714 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__multispecies_spp128_3 SP255 nan nan 1.0 nan 1.11111111111 1.85714285714 0.818181818182 61.8571428571 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__lingnae_[Not_Validly_Published]_HMT_181 SP258 nan nan 1.0 nan 0.0 0.0 0.0 18.7142857143 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidetes_[C-1]; o__Bacteroidetes_[O-1]; f__Bacteroidetes_[F-1]; g__Bacteroidetes_[G-5]; s__bacterium_HMT_511 SPP134 nan nan 1.0 nan 0.0 0.0 0.0 402.0 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp134_2 SP274 nan nan 1.0 nan 0.0 0.142857142857 0.636363636364 268.714285714 1.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Peptidiphaga; s__sp._HMT_183 SP275 nan nan 1.0 nan 0.0 0.0 0.0 79.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__thermophilus_HMT_152 SP277 nan nan 1.0 nan 0.0 0.0 0.0 18.0 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__oralis_HMT_705 SP283 nan nan 1.0 nan 0.333333333333 2.0 2.36363636364 215.285714286 0.0 k__Bacteria; p__Actinobacteria; c__Coriobacteriia; o__Coriobacteriales; f__Coriobacteriaceae; g__Atopobium; s__parvulum_HMT_723 SP284 nan nan 1.0 nan 0.0 0.0 0.0 21.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__gasseri_HMT_615 SP285 nan nan 1.0 nan 0.666666666667 0.571428571429 0.363636363636 24.5714285714 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__sp._HMT_221 SP286 nan nan 1.0 nan 0.0 0.0 0.0 116.285714286 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Lautropia; s__mirabilis_HMT_022 SP289 nan nan 1.0 nan 0.111111111111 0.714285714286 0.181818181818 19.7142857143 1.0 k__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Bergeyella; s__sp._HMT_322 SP293 nan nan 1.0 nan 0.0 0.0 0.0 15.0 0.0 k__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Capnocytophaga; s__sp._HMT_336 SPP140 nan nan 1.0 nan 0.0 0.0 0.0 15.0 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__multispecies_spp140_2 SPP141 nan nan 1.0 nan 0.111111111111 0.0 0.0 20.5714285714 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__multifamily; g__multigenus; s__multispecies_spp141_3 SPP143 nan nan 1.0 nan 1.55555555556 3.14285714286 5.18181818182 0.0 0.0 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__multispecies_spp143_5 SP310 nan nan 1.0 nan 0.222222222222 0.52380952381 0.0 106.0 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Alloprevotella; s__rava_HMT_302 SP311 nan nan 1.0 nan 0.0 0.0 0.0 37.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae_[XI]; g__Peptostreptococcaceae_[XI][G-6]; s__nodatum_HMT_694 SP312 nan nan 1.0 nan 0.0 0.0 0.0 40.1428571429 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Neisseriales; f__Neisseriaceae; g__Kingella; s__oralis_HMT_706 SP323 nan nan 1.0 nan 0.0 0.0 0.0 47.0 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__lactis_HMT_804 SP325 nan nan 1.0 nan 0.0 0.0 0.0 96.5714285714 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Lysobacter; s__gummosus SP328 nan nan 1.0 nan 8.22222222222 15.7142857143 11.6363636364 0.0 2.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIVa]; g__Lacnoclostridium; s__hathewayi SP329 nan nan 1.0 nan 4.44444444444 3.52380952381 3.0 0.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__perfringens SPP147 nan nan 1.0 nan 0.0 0.0 0.0 1905.0 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp147_2 SP332 nan nan 1.0 nan 0.0 0.0 0.0 39.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae_[XI]; g__Mogibacterium; s__timidum_HMT_042 SP336 nan nan 1.0 nan 0.0 0.0 0.0 16.2857142857 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Moraxellaceae; g__Acinetobacter; s__tjernbergiae SP337 nan nan 1.0 nan 0.0 9.28571428571 0.0 0.0 0.0 k__Bacteria; p__Synergistetes; c__Synergistetes_[C]; o__Synergistetes_[O]; f__Synergistetes_[F]; g__Synergistetes_[G]; s__sp._HMT_B52 SP339 nan nan 1.0 nan 0.111111111111 0.047619047619 0.0 21.2857142857 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIV]; g__Lachnoanaerobaculum; s__saburreum_HMT_494 SP34 nan nan 1.0 nan 0.0 0.0 0.0 3181.57142857 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Haemophilus; s__parainfluenzae_HMT_718 SPP154 nan nan 1.0 nan 0.222222222222 0.52380952381 0.0 16.5714285714 0.0 k__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__multigenus; s__multispecies_spp154_2 SP348 nan nan 1.0 nan 0.0 0.0 0.0 63.8571428571 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__sp._HMT_458 SPP156 nan nan 1.0 nan 0.0 0.0 0.0 24.1428571429 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Micrococcaceae; g__Micrococcus; s__multispecies_spp156_4 SP355 nan nan 1.0 nan 0.222222222222 0.047619047619 0.181818181818 35.4285714286 0.0 k__Bacteria; p__Saccharibacteria_(TM7); c__Saccharibacteria_(TM7)_[C-1]; o__Saccharibacteria_(TM7)_[O-1]; f__Saccharibacteria_(TM7)_[F-2]; g__Saccharibacteria_(TM7)_[G-5]; s__bacterium_HMT_356 SP365 nan nan 1.0 nan 0.0 0.428571428571 0.0 33.1428571429 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__oris_HMT_893 SPP162 nan nan 1.0 nan 0.0 0.0 0.0 561.857142857 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Gemellaceae; g__Gemella; s__multispecies_spp162_2 SP371 nan nan 1.0 nan 0.0 0.047619047619 0.0 16.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIV]; g__Catonella; s__morbi_HMT_165 SP372 nan nan 1.0 nan 0.0 0.0 0.0 81.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Dialister; s__pneumosintes_HMT_736 SP373 nan nan 1.0 nan 1.66666666667 1.2380952381 1.09090909091 32.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__faecalis_HMT_604 SP378 nan nan 1.0 nan 0.888888888889 0.761904761905 1.54545454545 28.5714285714 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIV]; g__Stomatobaculum; s__sp._HMT_097 SP38 nan nan 1.0 nan 110.111111111 0.761904761905 3.81818181818 20.0 0.0 k__Plantae; p__Angiosperms; c__Magnoliids; o__Laurales; f__Calycanthaceae; g__Calycanthus; s__floridus_HMT_D07 SP384 nan nan 1.0 nan 0.0 0.047619047619 0.272727272727 81.1428571429 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__denticola_HMT_291 SP385 nan nan 1.0 nan 0.0 0.0 0.0 49.5714285714 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Veillonella; s__rogosae_HMT_158 SP386 nan nan 1.0 nan 0.0 5.2380952381 0.181818181818 5.57142857143 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Corynebacteriaceae; g__Corynebacterium; s__vitaeruminis SP387 nan nan 1.0 nan 0.0 0.0 0.0 18.0 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__sp._HMT_305 SP39 nan nan 1.0 nan 46.8888888889 64.2857142857 61.0 1699.0 3.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__melaninogenica_HMT_469 SP390 nan nan 1.0 nan 0.0 0.0 0.0 70.8571428571 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__lecithinolyticum_HMT_653 SPP167 nan nan 1.0 nan 0.0 0.0 0.0 20.1428571429 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__multispecies_spp167_5 SPP168 nan nan 1.0 nan 0.0 0.0 0.454545454545 23.4285714286 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__multispecies_spp168_2 SPP169 nan nan 1.0 nan 0.0 0.0 0.0 248.714285714 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Neisseriales; f__Neisseriaceae; g__Neisseria; s__multispecies_spp169_2 SP40 nan nan 1.0 nan 0.0 0.0 0.0 234.285714286 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__mutans_HMT_686 SP400 nan nan 1.0 nan 0.0 0.428571428571 0.0909090909091 14.8571428571 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__oxytoca SP402 nan nan 1.0 nan 0.0 0.0 0.0 23.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Mollicutes; o__Mycoplasmatales; f__Mycoplasmataceae; g__Mycoplasma; s__faucium_HMT_606 SP405 nan nan 1.0 nan 0.0 0.0 0.0 29.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Veillonellaceae_[G-1]; s__bacterium_HMT_155 SPP171 nan nan 1.0 nan 0.0 0.0 0.0 51.2857142857 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; s__multispecies_spp171_5 SP41 nan nan 1.0 nan 0.111111111111 0.047619047619 0.181818181818 153.571428571 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__nigrescens_HMT_693 SP413 nan nan 1.0 nan 0.0 0.0 0.0 17.1428571429 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__oulorum_HMT_288 SPP172 nan nan 1.0 nan 0.0 0.0 0.0 15.2857142857 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__multispecies_spp172_6 SP423 nan nan 1.0 nan 0.0 0.0 0.0 45.0 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__aphrophilus_HMT_545 SPP175 nan nan 1.0 nan 0.0 0.0 0.0 45.4285714286 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp175_3 SP436 nan nan 1.0 nan 0.0 0.047619047619 0.0 14.7142857143 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__gerencseriae_HMT_618 SP439 nan nan 1.0 nan 0.333333333333 0.142857142857 0.0 40.8571428571 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__hofstadii_HMT_224 SP44 nan nan 1.0 nan 4.22222222222 1.09523809524 0.636363636364 239.285714286 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__sp._HMT_417 SP45 nan nan 1.0 nan 0.0 0.0 0.0 282.142857143 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__socranskii_HMT_769 SP455 nan nan 1.0 nan 0.0 0.0 0.0 27.8571428571 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__intermedius_HMT_644 SP477 nan nan 1.0 nan 0.333333333333 0.0 0.0 29.8571428571 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__sp._HMT_392 SP478 nan nan 1.0 nan 0.111111111111 0.190476190476 0.0 38.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae_[XI]; g__Peptostreptococcus; s__stomatis_HMT_112 SP48 nan nan 1.0 nan 0.0 0.0 0.0 93.7142857143 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__sp._HMT_056 SP492 nan nan 1.0 nan 0.0 0.0952380952381 0.0 57.1428571429 0.0 k__Bacteria; p__Synergistetes; c__Synergistia; o__Synergistales; f__Synergistaceae; g__Fretibacterium; s__fastidiosum_HMT_363 SPP184 nan nan 1.0 nan 1.0 1.95238095238 76.8181818182 10.1428571429 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Corynebacteriaceae; g__Corynebacterium; s__multispecies_spp184_2 SPP185 nan nan 1.0 nan 0.0 0.0 0.0 445.0 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Neisseriales; f__Neisseriaceae; g__Neisseria; s__multispecies_spp185_2 SP5 nan nan 1.0 nan 1.88888888889 1.09523809524 0.818181818182 252.428571429 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Corynebacteriaceae; g__Corynebacterium; s__matruchotii_HMT_666 SPP186 nan nan 1.0 nan 0.0 0.0 0.0 21.7142857143 0.0 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__multifamily; g__multigenus; s__multispecies_spp186_3 SPP189 nan nan 1.0 nan 0.0 0.0 0.0 647.0 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Carnobacteriaceae; g__Granulicatella; s__multispecies_spp189_2 SP524 nan nan 1.0 nan 0.0 0.238095238095 0.363636363636 18.5714285714 0.0 k__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Capnocytophaga; s__sputigena_HMT_775 SP53 nan nan 1.0 nan 1.77777777778 2.61904761905 7.09090909091 1008.28571429 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__histicola_HMT_298 SP531 nan nan 1.0 nan 0.222222222222 0.0952380952381 0.0 14.7142857143 0.0 k__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Capnocytophaga; s__granulosa_HMT_325 SPP191 nan nan 1.0 nan 0.0 0.0 0.0 21.8571428571 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Leifsonia; s__multispecies_spp191_4 SP54 nan nan 1.0 nan 0.666666666667 1.09523809524 1.81818181818 131.571428571 2.0 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__gracilis_HMT_623 SPP193 nan nan 1.0 nan 0.0 0.0 0.0 15.4285714286 0.0 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Caulobacterales; f__Caulobacteraceae; g__Brevundimonas; s__multispecies_spp193_3 SP55 nan nan 1.0 nan 40.3333333333 94.8571428571 104.272727273 0.0 3.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__fragilis SP550 nan nan 1.0 nan 0.0 0.0 0.0 15.0 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__sp._HMT_513 SP556 nan nan 1.0 nan 0.222222222222 0.190476190476 0.0 16.4285714286 0.0 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Novosphingobium; s__barchaimii SP558 nan nan 1.0 nan 0.222222222222 0.047619047619 0.0 31.2857142857 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__naeslundii_HMT_176 SP56 nan nan 1.0 nan 0.0 0.0 0.0 2045.28571429 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__denticola_HMT_584 SP560 nan nan 1.0 nan 0.0 0.047619047619 0.545454545455 21.5714285714 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__sp._HMT_212 SP568 nan nan 1.0 nan 0.0 0.047619047619 0.0 17.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__acidominimus SP569 nan nan 1.0 nan 0.0 0.0 0.0 14.7142857143 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__sp._HMT_260 SP57 nan nan 1.0 nan 0.0 0.0 0.0 68.4285714286 0.0 k__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__sp._HMT_270 SP573 nan nan 1.0 nan 0.0 0.047619047619 0.181818181818 35.5714285714 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__casseliflavus_HMT_801 SP576 nan nan 1.0 nan 1.0 0.0 0.181818181818 18.1428571429 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIV]; g__Lachnospiraceae_[G-3]; s__bacterium_HMT_100 SP588 nan nan 1.0 nan 1.33333333333 0.285714285714 0.0 26.0 0.0 k__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Capnocytophaga; s__leadbetteri_HMT_329 SP589 nan nan 1.0 nan 0.555555555556 0.0952380952381 0.0 20.8571428571 0.0 k__Bacteria; p__Saccharibacteria_(TM7); c__Saccharibacteria_(TM7)_[C-1]; o__Saccharibacteria_(TM7)_[O-1]; f__Saccharibacteria_(TM7)_[F-1]; g__Saccharibacteria_(TM7)_[G-1]; s__bacterium_HMT_348 SPP200 nan nan 1.0 nan 0.222222222222 0.0 0.0 475.428571429 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp200_5 SP59 nan nan 1.0 nan 0.444444444444 0.190476190476 0.636363636364 160.0 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__nucleatum SP597 nan nan 1.0 nan 0.0 0.047619047619 0.0 15.0 0.0 k__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Capnocytophaga; s__sp._HMT_338 SP599 nan nan 1.0 nan 0.0 0.0 0.0 36.5714285714 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Moraxellaceae; g__Acinetobacter; s__johnsonii_HMT_297 SPP202 nan nan 1.0 nan 0.333333333333 0.047619047619 0.0909090909091 54.5714285714 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__multispecies_spp202_2 SP6 nan nan 1.0 nan 6761.55555556 4482.57142857 5305.09090909 383.714285714 5194.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Corynebacteriaceae; g__Corynebacterium; s__mastitidis_HMT_328 SP609 nan nan 1.0 nan 1.11111111111 0.380952380952 0.181818181818 11.8571428571 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae_[XIV]; g__Lachnospiraceae_[G-2]; s__bacterium_HMT_096 SP613 nan nan 1.0 nan 0.0 0.0 0.0 15.4285714286 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__pleuritidis_HMT_303 SP619 nan nan 1.0 nan 0.0 0.0 0.0 15.2857142857 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae_[XI]; g__Filifactor; s__alocis_HMT_539 SP62 nan nan 1.0 nan 0.444444444444 0.238095238095 0.363636363636 100.857142857 1.0 k__Bacteria; p__Fusobacteria; c__Fusobacteria; o__Fusobacteriales; f__Fusobacteriaceae; g__Fusobacterium; s__nucleatum_ss_animalis SP620 nan nan 1.0 nan 3.88888888889 1.80952380952 3.72727272727 0.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__paraputrificum SP63 nan nan 1.0 nan 0.0 0.0 0.0 609.0 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptoniphilaceae; g__Peptoniphilaceae_[G-1]; s__bacterium_HMT_113 SP64 nan nan 1.0 nan 866.333333333 158.047619048 21.0 18.7142857143 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__pseudolongum SP65 nan nan 1.0 nan 0.0 0.0 0.0 15.2857142857 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__johnsonii_HMT_849 SPP211 nan nan 1.0 nan 0.0 0.0 0.0 14.2857142857 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__multispecies_spp211_2 SP66 nan nan 1.0 nan 0.0 0.47619047619 0.0 24.0 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__sp._HMT_171 SP67 nan nan 1.0 nan 0.0 0.0 0.0 207.142857143 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__lactarius_HMT_948 SP674 nan nan 1.0 nan 0.0 0.0 0.0 14.2857142857 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__cardiffensis_HMT_850 SP69 nan nan 1.0 nan 0.555555555556 0.333333333333 0.0 15.2857142857 0.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcaceae_[G-1]; s__bacterium_HMT_075 SP7 nan nan 1.0 nan 1319.55555556 4217.71428571 4597.90909091 189.428571429 2407.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Tannerellaceae; g__Parabacteroides; s__goldsteinii SP70 nan nan 1.0 nan 1.88888888889 0.285714285714 0.272727272727 106.142857143 0.0 k__Bacteria; p__Saccharibacteria_(TM7); c__Saccharibacteria_(TM7)_[C-1]; o__Saccharibacteria_(TM7)_[O-1]; f__Saccharibacteria_(TM7)_[F-1]; g__Saccharibacteria_(TM7)_[G-1]; s__bacterium_HMT_952 SP71 nan nan 1.0 nan 2.11111111111 0.952380952381 6.09090909091 1583.14285714 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Micrococcaceae; g__Rothia; s__dentocariosa_HMT_587 SP72 nan nan 1.0 nan 1.55555555556 0.142857142857 0.0909090909091 403.714285714 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Micrococcaceae; g__Rothia; s__aeria_HMT_188 SP74 nan nan 1.0 nan 0.333333333333 1.33333333333 1.63636363636 1918.85714286 1.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__danieliae SPP224 nan nan 1.0 nan 0.0 0.0 0.0 387.571428571 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__multispecies_spp224_2 SP77 nan nan 1.0 nan 4.88888888889 5.85714285714 5.09090909091 90.8571428571 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__sp._HMT_313 SP78 nan nan 1.0 nan 0.111111111111 0.285714285714 1.54545454545 146.714285714 0.0 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__sp._HMT_169 SP79 nan nan 1.0 nan 0.0 0.52380952381 0.272727272727 99.4285714286 0.0 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__pallens_HMT_714 SP80 nan nan 1.0 nan 0.444444444444 0.0 0.909090909091 147.571428571 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__hongkongensis_HMT_213 SP81 nan nan 1.0 nan 1.22222222222 0.238095238095 0.0 81.8571428571 0.0 k__Bacteria; p__Fusobacteria; c__Fusobacteriia; o__Fusobacteriales; f__Leptotrichiaceae; g__Leptotrichia; s__buccalis_HMT_563 SP82 nan nan 1.0 nan 0.0 0.0 0.0909090909091 17.5714285714 0.0 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__hominis_HMT_127 SP83 nan nan 1.0 nan 0.0 0.0 0.0 36.7142857143 0.0 k__Bacteria; p__Firmicutes; c__Negativicutes; o__Selenomonadales; f__Selenomonadaceae; g__Selenomonas; s__sputigena_HMT_151 SP84 nan nan 1.0 nan 0.222222222222 0.47619047619 0.818181818182 44.7142857143 0.0 k__Bacteria; p__Firmicutes; c__Erysipelotrichia; o__Erysipelotrichales; f__Erysipelotrichaceae; g__Solobacterium; s__moorei_HMT_678 SPP240 nan nan 1.0 nan 0.0 0.0 0.0 46.5714285714 0.0 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Neisseriales; f__Neisseriaceae; g__Neisseria; s__multispecies_spp240_2 SP89 nan nan 1.0 nan 0.0 0.0 0.0 16.0 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__coli_HMT_574 SPP246 nan nan 1.0 nan 0.0 0.047619047619 0.0 193.285714286 0.0 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__multifamily; g__multigenus; s__multispecies_spp246_7 SPP252 nan nan 1.0 nan 7.44444444444 2.33333333333 1.0 0.0 3.0 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__multispecies_spp252_2