Genome Meta Information: Abiotrophia sp. HMT-427 JCVI_44_bin.32 (GCA_015259595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015259595.1 | ||
| HOMD Taxon-ID | HMT-427 | ||
| Species Name (in use by HOMD) | Abiotrophia sp. HMT-427 | ||
| Organism Name (as deposited) | HMT-427 Abiotrophia sp. HMT-427 JCVI_44_bin.32 | ||
| Strain or Isolate | JCVI_44_bin.32 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia; s__Abiotrophia sp001815865 |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 5.5x | ||
| Contigs |
|
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| Total Sequence Length | 1,940,269 (bp) | ||
| GC Percentage | 46.88 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/595/GCA_015259595.1_ASM1525959v1 | ||
| CDS | 1764 | ||
| Genes | 1796 | ||
| mRNA | 1796 | ||
| misc RNA | 19 | ||
| rRNA | 0 | ||
| tRNA | 12 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 95.61 % | ||
| CheckM Contamination | 0.18 % | ||
| CheckM2 Completeness | 98.98 % | ||
| CheckM2 Contamination | 0.07 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1525959v1 |
| GenBank Assembly Accession | GCA_015259595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015259595.1 [NCBI] |
| BioSample | SAMN14570562 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:00:05.940 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABZFX01 |
| NCBI TaxID | 76631 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
