HOMD.org Taxon Data::Site/Status Filter applied Date: 2022-09-26 HMT_ID Domain Phylum Class Order Family Genus Species Status Body_site Warning Type_strain 16S_rRNA Clone_count Clone_% Clone_rank Synonyms NCBI_taxon_id NCBI_pubmed_count NCBI_nucleotide_count NCBI_protein_count Genome_ID General_info Cultivability Phenotypic_characteristics Prevalence Disease References 001 Bacteria Proteobacteria Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella schoenbuchensis Named Unassigned 0 NR_025410 Strain TFI A28SC 165694 9 93 5894 SEQF2664 039 Bacteria Proteobacteria Deltaproteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio sp._HMT_039 Phylotype Unassigned 0 AF385539 Oral Clone CA006 712185 0 1 0 080 Bacteria Firmicutes Clostridia Eubacteriales Lachnospiraceae Butyrivibrio sp._HMT_080 Phylotype Oral 0 AF287772 Clone BB124 830 0 0 0 090 Bacteria Firmicutes Clostridia Eubacteriales Lachnospiraceae Butyrivibrio sp._HMT_090 Phylotype Unassigned 0 AF287773 Oral Clone CK030 830 0 0 0 241 Bacteria Firmicutes Bacilli Bacillales Listeriaceae Brochothrix thermosphacta Named Unassigned 0 2756 0 0 0 SEQF2904 274 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidales_[F-2] Bacteroidales_[G-2] bacterium_HMT_274 Unnamed Oral 0 AY005072 Oral Clone AU126 [1-3] | Oral Strain KCL-W5603 | Oral Strain TFI-F0058 171549 0 0 0 SEQF1451 Bacteroidetes bacterium Oral taxon 274 strain F0058 has been isolated from a human subject by the Moore's Laboratory in November 1984. The subject was a 39 year old American black male. The bacteria was isolated from the subgingival oral biofilm at a site with moderate periodontitis. The bacteria was grown in anaerobic conditions. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference FJ577256. The strain is available at www.bei.org under the reference HM-4. This strain is part of the reference strains for the oral section of the Human Microbiome Project.
Presumptively Gram negativePresumptively anaerobic
26 clones found in libraries from 7 subjectsPresent in 20% of subgingival sites in healthy subjects and 76% of subgingival sites in periodontitis subjects with a prevalence ratio of 3.85 This disease association is higher than that of T. denticola P. gingivalis or T. forsythensis [2] Present in 20% of subgingival sites in healthy subjects and 76% of subgingival sites in periodontitis subjects with a prevalence ratio of 3.85 This disease association is higher thatn that of T. denticola P. gingivalis or T. forsythensis [2] 280 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-3] bacterium_HMT_280 Phylotype Oral 0 AY005071 Oral Clone DA064 1861803 0 0 0 281 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-3] bacterium_HMT_281 Phylotype Oral 0 AY005070 Oral Clone DA065 200643 0 0 0 340 Bacteria Actinobacteria Actinomycetia Micrococcales Brevibacteriaceae Brevibacterium paucivorans Named Unassigned 0 170994 0 0 0 SEQF3172 365 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-3] bacterium_HMT_365 Phylotype Oral 0 AF481206 | DQ003626 Bacteroidales genomosp. P8 | Oral Clone MB4_G15 | Oral Clone MCE7_164 200643 0 0 0 436 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-3] bacterium_HMT_436 Phylotype Unassigned 0 AY341819 Oral Clone P4PB_06 200643 0 0 0 455 Bacteria Firmicutes Clostridia Eubacteriales Lachnospiraceae Butyrivibrio sp._HMT_455 Phylotype Oral 0 AY349374 Oral Clone GI038 830 0 0 0 465 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides zoogleoformans Named Unassigned 0 L16488 Bacterium zoogleiformans | Capsularis zoogleiformans 28119 2 5 1 SEQF3051 468 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus subtilis Named Unassigned 0 AB018486 Bacillus globigii | Bacillus natto | Bacillus uniflagellatus | Vibrio subtilis 1423 29183 22367 255090 SEQF1173 | SEQF2039 | SEQF2289 | SEQF2290 | SEQF2291 | SEQF2293 | SEQF2324 503 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-3] bacterium_HMT_503 Phylotype Oral 0 DQ003613 Oral Clone MB1_G13 200643 0 0 0 505 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-5] bacterium_HMT_505 Phylotype Oral 0 DQ003615 Bacteroidales genomosp. P3 | Oral Clone MB1_G34 200643 0 0 0 507 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-5] bacterium_HMT_507 Phylotype Oral 0 DQ003617 Oral Clone MB2_G17 200643 0 0 0 509 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-4] bacterium_HMT_509 Phylotype Unassigned 0 DQ003619 Oral Clone MB2_P04 200643 0 0 0 511 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-5] bacterium_HMT_511 Phylotype Oral 0 DQ003634 Oral Clone MB3_C19 200643 0 0 0 544 Bacteria Proteobacteria Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella anthropi Named Unassigned 0 AM114398 529 284 2635 26923 SEQF1457 | SEQF2673 571 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia cepacia Named Unassigned 0 AF097530 Pseudomonas cepacia | Pseudomonas kingii | Pseudomonas multivorans 292 2434 5082 43044 SEQF2408 | SEQF2716 588 Bacteria Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Bifidobacterium dentium Named Unassigned 0 D86183 Actinomyces eriksonii 1689 42 290 17235 SEQF1385 | SEQF1497 | SEQF1911 | SEQF2053 590 Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas diminuta Named Unassigned 0 ATCC 14736 D49422 Bacterium parvulum | Pseudomonas diminuta 293 73 947 12821 SEQF1892 | SEQF2056 597 Bacteria Proteobacteria Alphaproteobacteria Hyphomicrobiales Bradyrhizobiaceae Bradyrhizobium elkanii Named Unassigned 0 U35000 29448 95 6275 37787 SEQF2325 | SEQF2487 603 Bacteria Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Bulleidia extructa Named Oral 0 DSM 13220 AF220064 118748 6 49 2818 SEQF1730 Solobacterium moorei is a closely related species and on the basis of its position in the 16S rRNA phylogenetic tree appears to represents a novel species within the genus Bulleidia. The name Bulleidia would have precedence by prior publication under Rule 27 of the Bacteriological Code. Slow growth on Fastidious Anaerobe Agar + 5 % horse blood. After 7 days incubation colonies are 0.7-0.9 mm in diameter circular entire low convex grey to off-white opaque and glossy Gram positive short rods [1]. Obligate anaerobes. Ferment glucose and maltose. Metabolic end-products of glucose metabolism are moderate amounts of acetate and lactate and trace amounts of succinate. Arginine is hydrolysed. mol % G+C content of the DNA is 38. Found in the human mouth Isolated from subgingival plaque in periodontitis and from odontogenic infections [234]. 630 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides heparinolyticus Named Unassigned 0 L16487 Prevotella heparinolyticus 28113 4 13 1 SEQF3056 636 Bacteria Proteobacteria Alphaproteobacteria Hyphomicrobiales Boseaceae Bosea vestrisii Named Unassigned 0 CCUG 43114 U87774 151416 0 0 0 SEQF3148 787 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides pyogenes Named Unassigned 0 F0041 AB200228 Bacteroides tectum 310300 6 961 19709 SEQF2453 | SEQF2665 | SEQF2666 | SEQF2667 | SEQF2668 824 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus anthracis Named Unassigned 0 AF155951 Bacillus cereus | Bacteridium anthracis 1392 4959 5307 240770 SEQF1037 | SEQF1038 | SEQF1041 | SEQF1139 | SEQF1140 | SEQF1141 | SEQF1143 | SEQF1150 | SEQF1151 | SEQF1153 | SEQF1708 | SEQF1709 | SEQF2323 Note: The 16S rRNA sequence for B. anthracis is almost identical to that for B. cereus and B. thuringiensis. 828 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella pertussis Named Unassigned 0 U04950 Bacterium tussis-convulsivae | Haemophilus pertussis | Hemophilus pertussis | Microbe de | Microbe de la coqueluche 520 6181 14111 157883 SEQF1086 | SEQF2266 862 Bacteria Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Bifidobacterium longum Named Unassigned 0 ATCC 15707 | DSM 20219 NR_043437 Previously provisional taxon B54 216816 835 4656 101499 SEQF1952 | SEQF2040 | SEQF2041 | SEQF2042 | SEQF2043 | SEQF2044 | SEQF2045 | SEQF2046 | SEQF2248 | SEQF2249 | SEQF2367 | SEQF2368 | SEQF2369 | SEQF2370
Was previously provisional taxon B54 in RefSeq Extended V1.1. Original reference seq for B54 AM990172 was chimeric.Reference sequence NR_043437 is for Bifidobacterium longum subsp. infantis
889 Bacteria Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Bifidobacterium breve Named Unassigned 0 ATCC 15700 | CCUG 30511 | DSM 20213 AB006658 1685 404 1020 41494 SEQF2413 | SEQF2415 | SEQF2425 | SEQF2426 | SEQF2535 | SEQF2576 890 Bacteria Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Bifidobacterium subtile Named Unassigned 0 ATCC 27537 | CCUG 34980 | DSM 20096 | JCM 5822 D89329 | D89378 77635 2 114 4394 SEQF2577 | SEQF2708 891 Bacteria Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Bifidobacterium scardovii Named Unassigned 0 ATCC BAA-773 | CCUG 13008 | DSM 13734 | JCM 12489 AB437363 158787 6 58 2492 SEQF2707 895 Bacteria Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Bifidobacterium animalis Named Unassigned 0 AB050136 | D86185 Bifidobacterium lactis 28025 341 808 51660 SEQF2463 | SEQF2464 | SEQF2465 | SEQF2466 | SEQF2467 | SEQF2468 | SEQF2469 | SEQF2470 | SEQF2471 | SEQF2472 | SEQF2474 | SEQF2475 899 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-3] bacterium_HMT_899 Phylotype Unassigned 0 JQ406536 Bacteroidales bacterium clone BL234 | Bacteroidales bacterium K1 200643 0 0 0 911 Bacteria Bacteroidetes Bacteroidetes_[C-1] Bacteroidetes_[O-1] Bacteroidetes_[F-1] Bacteroidetes_[G-7] bacterium_HMT_911 Phylotype Unassigned 0 JQ406540 Porphyromonadaceae bacterium clone DL325 | Porphyromonodaceae bacterium K1 200643 0 0 0