HOMD.org Taxon Data::Site/Status Filter applied Date: 2022-09-28 HMT_ID Domain Phylum Class Order Family Genus Species Status Body_site Warning Type_strain 16S_rRNA Clone_count Clone_% Clone_rank Synonyms NCBI_taxon_id NCBI_pubmed_count NCBI_nucleotide_count NCBI_protein_count Genome_ID General_info Cultivability Phenotypic_characteristics Prevalence Disease References 032 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas sp._HMT_032 Phylotype Unassigned 0 AF385547 Oral Clone AZ002 712508 0 8 0 048 Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus typhae Phylotype Unassigned 0 AF385540 Oral Clone CA007 712417 0 9 0 081 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-7] bacterium_HMT_081 Unnamed Oral 0 AF287764 Clone BB142 186804 0 0 0 SEQF3179 091 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-2] bacterium_HMT_091 Phylotype Oral 0 AF287762 Oral Clone CK047 186804 0 0 0 103 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-4] bacterium_HMT_103 Phylotype Oral 0 AJ012604 Oral Clone PUS9.170 186804 0 0 0 104 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Paracoccus yeei Named Unassigned 0 147645 0 0 0 SEQF2867 105 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-1] [Eubacterium]_infirmum Named Oral 0 NCTC 12940 AF287761 | U13039 Oral strain W 1417 186804 0 0 0 SEQF1695 Eubacterium infirmum belongs to a phylogenetic cluster distant from Eubacterium limosum the type species of the genus and is therefore not a member of Eubacterium sensu stricto. Along with many other members of this poorly-defined genus E. infirmum will be assigned to a novel genus in due course. Slow growth on Fastidious Anaerobe Agar + 5% horse blood plates. After 7 days colonies are approximately 1 mm in diameter circular convex and translucent. Cells are obligately anaerobic non-spore-forming nonmotile Gram-positive short rods (0.5 µm by 1-2 µm) [1]. Cells occur singly. Asaccharolytic. End-products of metabolism are moderate amounts of acetate and butyrate. The mol% G+C of the DNA is 38. Found in the human mouth Isolated from subgingival plaque in periodontitis. 106 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-7] [Eubacterium]_yurii Named Oral 0 AF287765 Eubacterium yurii | Oral Strain TFI A3MT 186804 0 0 0 109 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus harei Named Unassigned 0 54005 0 0 0 SEQF2888 | SEQF2960 | SEQF3035 110 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Parvimonas sp._HMT_110 Unnamed Oral 0 AF287767 | AY349390 Oral Clone AJ062 | Oral Clone FJ023 | Oral Clone HE064 671230 0 62 3209 SEQF1676 111 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Parvimonas micra Named Oral 0 ATCC 33270 AF385543 | AF385559 Diplococcus glycinophilus | Micromonas micros | Peptococcus glycinophilus | Peptostreptococcus micros | Streptococcus anaerobius | Streptococcus micros 33033 103 431 4480 SEQF1029 This species is known to be heterogeneous with micro-variation among 16S rRNA sequences including between operons within strains and phenotypic variation including colonial appearance [1]. Colonies on horse blood agar are around 1 mm in diameter circular entire opaque white or translucent gray and may be smooth or rough after 4 days anaerobic incubation. Small (0.3 -0.7 micron diameter) Gram-positive cocci occurring in pairs and short chains [2]. Obligate anaerobe. Strains are asaccharolytic and the end-products of metabolism are primarily acetate with small amounts of lactate and sometimes succinate produced. The mol % G+C content of the DNA is 27-28. Parvimonas micra is a commonly found oral species and is isolated from dental plaque and the tongue in health and a variety of oral disease associated microbiota including periodontitis endodontic and dentoalveolar infections pericoronitis and advanced dental caries. Has been isolated from most types of oral infection. Is a particularly frequent isolate from acute dentoalveolar infections where it is often a member of the 15-20 species consortium associated with the condition. Has also been isolated from clinical specimens obtained from infections at other body sites primarily soft-tissue abscesses and bite wounds. These are primarily at sites above the diaphragm suggesting that the mouth is the primary habitat. 112 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcus stomatis Named Oral 0 AF287763 | DQ160208 Oral Clone CK035 | Oral Strain TFI A21H2 341694 7 345 3186 SEQF1393 113 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilaceae_[G-1] bacterium_HMT_113 Unnamed Oral 0 AF287766 Oral Clone DA014 1570339 0 0 0 SEQF2443 167 Bacteria Firmicutes Clostridia Eubacteriales Peptococcaceae Peptococcus sp._HMT_167 Lost Oral 0 AF481224 Oral Clone MCE10_265 | Oral StrainsGEA8 671215 0 18 0 168 Bacteria Firmicutes Clostridia Eubacteriales Peptococcaceae Peptococcus sp._HMT_168 Phylotype Oral 0 AF287780 Oral Clone I070 712426 0 2 0 183 Bacteria Actinobacteria Actinomycetia Actinomycetales Actinomycetaceae Peptidiphaga sp._HMT_183 Unnamed Oral 0 AY008311 | AY207066 Oral Clone EL030 | Oral Strain P2P_19 712888 0 286 4640 SEQF2310 187 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus sp._HMT_187 Unnamed Unassigned 0 162289 0 0 0 SEQF2963 192 Bacteria Actinobacteria Actinomycetia Propionibacteriales Propionibacteriaceae Propionibacteriaceae_[G-2] bacterium_HMT_192 Unnamed Unassigned 0 To be submitted Oral Strain TFI-C03KA 31957 0 22 5040 SEQF1972 219 Bacteria Fusobacteria Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia sp._HMT_219 Phylotype Oral 0 AF385572 Oral Clone EI022 652714 0 9 0 221 Bacteria Fusobacteria Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia sp._HMT_221 Unnamed Oral 0 AF432138 Oral Clone FP036 712362 0 1 0 SEQF3704 272 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola abscessus Unnamed Oral 0 AY005066 Oral Clone X083 | Oral Strain TFI-F0093 815 0 0 0 SEQF1646 273 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas endodontalis Named Oral 0 AY005067 | AY005068 Bacteroides endodontalis | Oral Clone AJ002 | Oral Clone BB134 28124 176 169 3928 SEQF1033 275 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas sp._HMT_275 Unnamed Oral 0 AF393476 Oral Clone AW032 712435 0 2 0 SEQF3680 277 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas sp._HMT_277 Phylotype Oral 0 AF385555 Oral Clone BR037 712436 0 2 0 278 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas sp._HMT_278 Unnamed Oral 0 AF385560 Oral Clone BS045 712437 0 206 3945 SEQF2357 279 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas pasteri Named Oral 0 AF385516 | AY008310 Oral Clone CW034 | Oral Clone DP023 | Oral Strain TFI-F003 1583331 0 146 3447 SEQF1907 283 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas catoniae Named Oral 0 AF366271 | X82823 Oral Clone DS033 | Oral Strain THI-F0035 | Oribaculum catoniae 41976 6 130 5292 SEQF1936 | SEQF2632 284 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas sp._HMT_284 Lost Oral 0 AY008313 Oral Clone EP003 | Oral Strain TFI-F0037 712439 0 5 0 285 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas sp._HMT_285 Phylotype Oral 0 AY005069 Oral Clone F016 836 0 0 0 288 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella oulorum Named Oral 0 L16472 Bacteroides oulorum | Oral Strain TFI-C08KA | Prevotella oulora 28136 3 420 6641 SEQF1691 | SEQF2684 289 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella maculosa Named Oral 0 AY005057 | AY005058 | EF534315 Oral Clone AA016 | Oral Clone AA020 | Oral Strain KCL-W1609 | Prevotella genomosp. | Prevotella genomosp. T3 [1] 439703 1 560 7612 SEQF2147 | SEQF2508 | SEQF2680 291 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella denticola Named Oral 0 AY005053 | AY005054 Bacteroides denticola | Oral Clone AH005 | Oral Clone AO036 28129 44 667 13971 SEQF1677 | SEQF2146 | SEQF2563 | SEQF2676 | SEQF2733 | SEQF3700 | SEQF3701 | SEQF3702 | SEQF3711 298 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella histicola Named Oral 0 AF385551 Oral Clone BE073 470565 2 205 6514 SEQF1852 | SEQF2679 | SEQF3698 299 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella nanceiensis Named Oral 0 CCUG 54409 AY005064 Oral Clone BI027 | Oral Strain KCL-W1169 | Oral Strain TFI-F0039 425941 0 13 5799 SEQF1452 Prevotella sp. oral taxon 299 strain F0039 has been isolated from a human subject by the Moore's Laboratory in September 1981. The subject was a 44 years old American white male. The bacteria was isolated from the subgingival oral biofilm at an healthy site. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference FJ577257. The strain is available at www.bei.org under the reference HM-3.This strain is now part of the reference strains for the oral section of the Human Microbiome Project. 300 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_300 Phylotype Oral 0 AF385554 | AY278625 Oral Clone BR014 | Oral Clone C3MLM058 712456 0 18 0 301 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_301 Phylotype Oral 0 AF385558 Oral Clone BS041 712457 0 1 0 303 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella pleuritidis Named Oral 0 AY005063 | AY349392 Oral Clone CY006 | Oral Clone FL019 407975 1 207 5773 SEQF1935 304 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_304 Phylotype Oral 0 AY005065 Oral Clone DA058 712459 0 5 0 305 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_305 Phylotype Oral 0 AF385509 Oral Clone DO014 712460 0 1 0 306 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_306 Unnamed Oral 0 AF385511 Oral Clone DO027 712461 0 161 4681 SEQF1887 307 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella salivae Named Oral 0 AF385512 Oral Clone DO033 228604 6 436 10913 SEQF1932 | SEQF2149 309 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_309 Phylotype Oral 0 AF385515 Oral Clone DO045 712463 0 1 0 311 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella oris Named Oral 0 AY005056 | L16474 Bacteroides oris | Oral Clone F045 28135 33 832 13678 SEQF1656 | SEQF2510 | SEQF2683 313 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella jejuni Unnamed Oral 0 AF432133 | AY349397 Oral Clone FM005 | Oral Clone GI059 652722 0 19 0 SEQF3063 | SEQF3696 | SEQF3697 314 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_314 Unnamed Oral 0 AY349393 Oral Clone FU048 | Oral Strain TFI-F0054 712464 0 15 0 SEQF3074 315 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_315 Phylotype Oral 0 AY349394 Oral Clone FW035 712465 0 2 0 317 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_317 Unnamed Oral 0 AY005061 Oral Strain TFI-B31FD | Oral Strain TFI-F0055 652721 0 395 5808 SEQF1477 Prevotella sp. Oral Taxon 317 strain F0108 has been isolated from a human subject by the Moore's Laboratory in April 1992. The subject was a 38 year old American black female. The bacteria was isolated from the subgingival oral biofilm at a healthy site. The bacteria was grown in anaerobic conditions. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference FJ577255. The strain is available at www.bei.org under the reference HM-5. This strain is part of the reference strains for the oral section of the Human Microbiome Project. 318 Bacteria Bacteroidetes Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter sp._HMT_318 Phylotype Unassigned 0 AF385531 Oral Clone AV100 84567 0 0 0 321 Bacteria Bacteroidetes Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter sp._HMT_321 Phylotype Unassigned 0 AF385549 Oral Clone AZ123 84567 0 0 0 344 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas luteola Named Unassigned 0 47886 0 0 0 SEQF3076 357 Bacteria Synergistetes Synergistia Synergistales Synergistaceae Pyramidobacter piscolens Named Oral 0 W5455 AY005444 | AY278615 | EU309492 Oral Clone BA121 | Oral Clone C2ALM009 | Oral Strain W5455 638849 3 313 5512 SEQF1611 Belongs to the cultivable cluster of the phylum 'Synergistetes' and related to Jonquetella anthropi [1]. After 7-day incubation on Fastidious Anaerobe Agar plates (incorporating 5 % horse blood) strains of this species form circular entire high convex colonies around 1 mm in diameter. Gram-negative obligately anaerobic cocco-bacilli to short bacilli. Strains are asaccharolytic and generally biochemically unreactive although hydrogen sulphide is produced. Acetic and isovaleric acids and minor to trace amounts of propionic isobutyric succinic and phenyl-acetic acids are produced as end products of fermentation. The G + C content of the DNA of the type strain is 59 mol %. Found in the human mouth and vagina. Has been isolated from dvanced dental caries acute dentoalveolar infections and subgingival plaque in periodontitis. 369 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-4] bacterium_HMT_369 Phylotype Oral 0 AF481212 Oral Clone MCE10_174 186804 0 0 0 375 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus sp._HMT_375 Unnamed Unassigned 0 AF481225 Oral Strain KCL-E3_32 | Oral Strain KCL-W3886 712430 0 13 4228 SEQF1855 376 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_376 Unnamed Oral 0 AF481226 Oral Strain KCL-E7_34 | Oral Strain KCL-W4029 712466 0 18 0 SEQF3055 377 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-7] [Eubacterium]_yurii Named Oral 0 L34629 Eubacterium yurii subsp. margaratiae | Eubacterium yurii subsp. yurii 186804 0 0 0 SEQF1912 Reference sequences for [Eubacterium] yurii subsps. yurii and margaratiae are >>99% identical by 16S rRNA and so given only one HOT-#. 378 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella micans Named Oral 0 AF481228 Prevotella sp. E7_56 189723 2 484 4513 SEQF1863 | SEQF2509 | SEQF2682 382 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-8] bacterium_HMT_382 Phylotype Unassigned 0 AF538855 Oral Clone P2PC_29 581174 0 0 0 383 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-1] bacterium_HMT_383 Phylotype Unassigned 0 AF538856 Oral Clone P2PB_46 186804 0 0 0 386 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus sp._HMT_386 Unnamed Unassigned 0 AF538859 Oral Clone P4PA_156 | Oral Strain THI-F0131 652713 0 100 2796 SEQF1472 Peptoniphilus sp. Oral taxon 386 strain F0131 has been isolated from a human subject by the Moore's Laboratory in August 1978. The subject was a 54 year old American black female. The bacteria was isolated from the subgingival oral biofilm at a site with a moderate periodontitis. The bacteria was grown in anaerobic conditions. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference FJ577254. The strain is available at www.bei.org under the reference HM-6. This strain is part of the reference strains for the oral section of the Human Microbiome Project. 393 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Parvimonas sp._HMT_393 Unnamed Oral 0 AY207059 Oral Strain KCL-P4P_31 | Oral Strain KCL-W5159 713008 0 21 3178 SEQF1857 396 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_396 Phylotype Oral 0 AY207050 Oral Clone P4PB_83 712467 0 1 0 443 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_443 Phylotype Oral 0 AY331415 Oral Clone P4PB_24 712468 0 1 0 467 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-1] [Eubacterium]_sulci Named Oral 0 AJ006963 Fusobacterium sulci 186804 0 0 0 SEQF2744 469 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella melaninogenica Named Oral 0 AY349395 Bacterium melaninogenicum | Bacteroides melaninogenicus | Fusiformis nigrescens | Hemophilus melaninogenicus | Ristella melaninogenica 28132 546 458 11522 SEQF1142 | SEQF1800 | SEQF2734 | SEQF3687 | SEQF3688 | SEQF3689 | SEQF3690 | SEQF3691 | SEQF3693 | SEQF3694 | SEQF3695 472 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_472 Unnamed Oral 0 AY349398 Oral Clone GI032 | Oral Strain TFI-F0046 655809 0 287 5865 SEQF1617 475 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_475 Unnamed Oral 0 AY349401 Oral Clone IK053 712471 0 1 0 SEQF3683 477 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas stutzeri Named Unassigned 0 AF063219 Achromobacter sewerinii | Achromobacter stutzeri | Bacillus denitrificans | Bacillus nitrogenes | Bacillus stutzeri | Bacterium stutzeri | Pseudomonas perfectimarina | Pseudomonas perfectomarina | Pseudomonas perfectomarinus | Pseudomonas stanieri 316 828 4069 139747 SEQF1303 | SEQF2170 | SEQF2171 | SEQF2333 | SEQF2382 | SEQF2513 | SEQF2521 493 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-5] bacterium_HMT_493 Phylotype Unassigned 0 AY349373 Oral Clone JH012 186804 0 0 0 495 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-3] bacterium_HMT_495 Phylotype Oral 0 AY349378 Oral Clone JS001 186804 0 0 0 515 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_515 Phylotype Oral 0 DQ003622 MB3_P13 712472 0 1 0 526 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella koreensis Phylotype Oral 0 AY944134 | DQ003633 Oral Clone MB7_G16 | Oral Clone P4P_53 712473 0 9 0 536 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas aeruginosa Named Unassigned 0 Z76651 Bacillus aeruginosus | Bacillus pyocyaneus | Bacterium aeruginosum | Bacterium pyocyaneum | Micrococcus pyocyaneus | probable synonym | Pseudomonas polycolor | Pseudomonas pyocyanea 287 49842 120751 1571459 SEQF1295 | SEQF1297 | SEQF1298 | SEQF1619 | SEQF1991 | SEQF1992 | SEQF2167 | SEQF2168 | SEQF2193 | SEQF2696 | SEQF2697 538 Bacteria Firmicutes Clostridia Eubacteriales Eubacteriaceae Pseudoramibacter alactolyticus Named Oral 0 AB036759 Eubacterium alactolyticum | Ramibacterium alactolyticum | Ramibacterium dentium | Ramibacterium pleuriticum 113287 24 363 5030 SEQF1993 542 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcus anaerobius Named Oral 0 AF023045 Streptococcus anaerob | Streptococcus anaerobius 1261 236 691 6808 SEQF1895 | SEQF1921 | SEQF2506 547 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas asaccharolytica Named Unassigned 0 L16490 Bacteroides asaccharolyticus | Bacteroides melaninogenicus 28123 59 154 7927 SEQF2145 | SEQF2160 548 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus asaccharolyticus Named Unassigned 0 D14138 Micrococcus asaccharolyticus | Peptococcus aerogenes | Peptococcus asaccharolyticus | Peptostreptococcus asaccharolyticus | Schleiferella asaccharolytica | Staphylococcus asaccharolyticus 1258 15 22 14 SEQF3154 553 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella baroniae Named Oral 0 AJ012605 Prevotella genomosp. | Prevotella genomospecies 305719 8 409 7229 SEQF1934 | SEQF2582 | SEQF2675 556 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella bivia Named Oral 0 L16475 Bacteroides bivius 28125 116 311 6562 SEQF1797 | SEQF2380 | SEQF2728 | SEQF2729 | SEQF2730 557 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-9] [Eubacterium]_brachy Named Oral 0 U13038 186804 0 0 0 SEQF2787 560 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella buccae Named Oral 0 L16478 Bacteroides buccae | Bacteroides capillus | Bacteroides pentosaceus 28126 29 616 9943 SEQF1798 | SEQF1985 562 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella buccalis Named Unassigned 0 L16476 Bacteroides buccalis 28127 10 253 4771 SEQF1799 | SEQF2731 | SEQF2732 572 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella veroralis Named Oral 0 L16473 Bacteroides veroralis 28137 11 393 8080 SEQF1663 | SEQF2511 | SEQF2688 | SEQF3681 583 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella dentalis Named Oral 0 X81876 Hallella seregens | Mitsuokella dentalis 52227 4 188 10693 SEQF2022 586 Bacteria Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Parascardovia denticolens Named Unassigned 0 D89331 Bifidobacterium denticolens 78258 10 159 8492 SEQF1655 | SEQF2021 | SEQF2391 600 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella enoeca Named Oral 0 AJ005635 76123 2 242 1773 SEQF2677 | SEQF2792 612 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas fluorescens Named Unassigned 0 Z76662 Bacillus fluorescens | Bacterium fluorescen | Bacterium fluorescens | Liquidomonas fluorescens 294 4559 15278 216301 SEQF1300 | SEQF1301 | SEQF1302 | SEQF2169 | SEQF2196 | SEQF2332 | SEQF2381 619 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas gingivalis Named Oral 0 X73964 Bacteroides gingivalis 837 5704 8339 53714 SEQF1064 | SEQF1538 | SEQF1975 | SEQF2355 | SEQF2356 | SEQF2366 | SEQF2392 | SEQF2447 | SEQF2457 | SEQF2458 | SEQF2507 | SEQF2616 | SEQF2740 | SEQF2741 | SEQF2742 | SEQF2743 | SEQF2797 | SEQF2798 | SEQF2799 | SEQF3182 | SEQF3183 | SEQF3184 | SEQF3185 | SEQF3186 | SEQF3187 | SEQF3188 | SEQF3189 | SEQF3190 | SEQF3191 | SEQF3192 | SEQF3193 | SEQF3194 | SEQF3195 | SEQF3196 | SEQF3197 | SEQF3198 | SEQF3199 | SEQF3200 | SEQF3201 | SEQF3202 | SEQF3203 | SEQF3204 | SEQF3205 | SEQF3206 | SEQF3207 | SEQF3208 | SEQF3209 | SEQF3210 | SEQF3211 | SEQF3212 | SEQF3213 | SEQF3214 | SEQF3215 | SEQF3216 | SEQF3217 | SEQF3218 | SEQF3219 | SEQF3220 | SEQF3221 | SEQF3222 | SEQF3223 | SEQF3224 | SEQF3225 | SEQF3226 643 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella intermedia Named Oral 0 ATCC 25611 L16468 Bacteroides intermedius | Bacteroides melaninogenicus | Prevotella intermedius 28131 1567 406 8676 SEQF1065 | SEQF2554 | SEQF3521 | SEQF3522 | SEQF3523 | SEQF3524 | SEQF3525 | SEQF3526 | SEQF3527 | SEQF3528 | SEQF3529 | SEQF3530 | SEQF3531 | SEQF3532 | SEQF3533 | SEQF3534 | SEQF3535 | SEQF3536 | SEQF3537 | SEQF3538 | SEQF3539 | SEQF3540 | SEQF3541 | SEQF3542 | SEQF3543 | SEQF3544 | SEQF3545 | SEQF3546 | SEQF3547 | SEQF3548
Formerly known as Bacteroides melaninogenicus subsp. intermedius and then Bacteroides intermedius. Phylogenetic analysis based on 16S rRNA sequence comparisons and biochemical characteristics warranted separate genus designation to the genus Prevotella i.e. Prevotella intermedia [1].
Black pigmented colonies (0.5- 2.0 mm diameter) after anaerobic incubation for 2 days on hemin-containing agar media. Hemin is required for growth Vitamin K is stimulatory. Colonies fluoresce under shortwave UV. Obligately anaerobic Gram negative short rod (0.5 by 2 um). Moderately saccaharolytic fermenting glucose and other carbohydrates to mainly to succinate and acetate. Cell walls contain meso-diaminopimelic acid but not KDO or heptose. Primarily colonizes the gingival crevice but also found in head neck abdominal and lung infections. Has been isolated from blood. Although commonly detected in subgingival plaque P. intermedia has been associated with periodontal disease [2] aggressive periodontitis necrotizing ulcerative periondontis endodontic infections [4] and facial gangrene (noma) [5]. Has also been linked to coronary artery disease [3]. 658 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella loescheii Named Oral 0 L16481 Bacteroides loescheii 840 48 415 5717 SEQF2461 665 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella marshii Named Oral 0 AF481227 189722 4 275 4990 SEQF1915 | SEQF2681 673 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-6] [Eubacterium]_minutum Named Oral 0 U13037 Eubacterium tardum 186804 0 0 0 SEQF3052 676 Bacteria Proteobacteria Gammaproteobacteria Enterobacterales Morganellaceae Proteus mirabilis Named Unassigned 0 AF008582 584 5393 2096 39620 SEQF1289 | SEQF1802 | SEQF2393 | SEQF2394 | SEQF2572 685 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella multiformis Named Oral 0 AB182483 282402 3 136 5663 SEQF1986 | SEQF3692 693 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella nigrescens Named Oral 0 X73963 28133 336 710 14278 SEQF1689 | SEQF1893 | SEQF2617 | SEQF3684 | SEQF3685 | SEQF3686 694 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-6] [Eubacterium]_nodatum Named Oral 0 Z36274 186804 0 0 0 SEQF2789 705 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella oralis Named Oral 0 AY323522 Bacteroides oralis | Ristella oralis 28134 39 138 12441 SEQF1988 | SEQF2523 | SEQF2618 714 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella pallens Named Oral 0 Y13106 Prevotella intermedia 60133 11 280 5653 SEQF1989 740 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas oleovorans Named Unassigned 0 Z76666 330 204 1017 33778 SEQF2352 | SEQF2423 | SEQF2714 759 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-5] [Eubacterium]_saphenum Named Oral 0 U65987 Eubacterium saphenus 186804 0 0 0 SEQF1017 781 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella saccharolytica Named Oral 0 TBS 633701 1 484 6843 SEQF1946 | SEQF2685 782 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella fusca Named Oral 0 CCUG 57946 | DSM 22504 | JCM 17724 | W1435 AB683252 | FJ545433 F0012 | Prevotella genomosp. T2 Strain W1435 | Prevotella sp. oral taxon 782 589436 1 243 1937 SEQF2678 | SEQF2753 | SEQF3699 Prevotella fusca sp. nov. and Prevotella scopos sp. nov. isolated from the human oral cavity. PMID: 20495041 785 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas uenonis Named Unassigned 0 TBS [AY570514] 281920 2 818 5789 SEQF1796 | SEQF2674 786 Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus phoenicis Named Unassigned 0 NBRC 106274 TBS [AM283040] 554117 0 453 8596 SEQF1658 790 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilaceae_[G-2] bacterium_HMT_790 Phylotype Unassigned 0 AY134899 1570339 0 0 0 794 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella multisaccharivorax Named Unassigned 0 AB200414 310514 4 48 5383 SEQF1987 795 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella shahii Named Oral 0 AB108825 228603 4 290 2052 SEQF2687 820 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_820 Unnamed Oral 0 AF537212 Prevotella sp. P2A_FAAD4 838 0 0 0 SEQF3072 834 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas otitidis Named Unassigned 0 AY953147 319939 7 273 804 SEQF2695 836 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus lacrimalis Named Oral 0 F0141 Strain F0141 33031 0 315 2833 SEQF1681 | SEQF1795 | SEQF2505 840 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus indolicus Named Unassigned 0 NR_042753 Micrococcus indolicus | Peptococcus indolicus | Peptostreptococcus indolicus | Schleiferella indolica 33030 5 517 4523 SEQF1974 845 Bacteria Fusobacteria Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia goodfellowii Named Oral 0 157692 3 432 6360 SEQF1600 | SEQF2629 848 Bacteria Actinobacteria Actinomycetia Actinomycetales Actinomycetaceae Peptidiphaga gingivicola Named Oral 0 GQ131416 1823756 0 30 5183 SEQF1660 885 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella scopos Named Oral 0 CCUG 57945 | DSM 22613 | JCM 17725 | W2052 AB683253 Prevotetella genomosp. T2 strain W1435 589437 1 232 1974 SEQF2686 | SEQF2922 | SEQF3682 915 Bacteria Actinobacteria Actinomycetia Propionibacteriales Propionibacteriaceae Propionibacteriaceae_[G-1] bacterium_HMT_915 Phylotype Oral 0 KC203064 Propionibacteriaceae bacterium clone HS10_B_C3 31957 0 0 0 921 Bacteria Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus glucanolyticus Named Unassigned 0 W10507 59843 2 16 1 SEQF2880 | SEQF3065 922 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-7] bacterium_HMT_922 Phylotype Oral 0 JF212838 186804 0 0 0 929 Bacteria Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilaceae_[G-3] bacterium_HMT_929 Unnamed Unassigned 0 1570339 0 0 0 SEQF3070 930 Bacteria Bacteroidetes Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas sp._HMT_930 Phylotype Oral 0 JQ468499 836 0 0 0 933 Bacteria Bacteroidetes Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter sp._HMT_933 Phylotype Unassigned 0 GQ023217 84567 0 0 0 942 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella sp._HMT_942 Phylotype Oral 0 FJ976378 838 0 0 0 943 Bacteria Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae Prevotella aurantiaca Named Oral 0 OMA31 NR_112878 596085 0 0 0 SEQF3090 950 Bacteria Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcaceae_[G-3] bacterium_HMT_950 Phylotype Unassigned 0 AM419965 186804 0 0 0