HOMD ::Family:Burkholderiaceae

Family: Burkholderiaceae

Full Lineage: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae Each rank name is a link to abundance plots at that rank:

Lower rank member(s): [Genus:Burkholderia] [Genus:Cupriavidus] [Genus:Lautropia] [Genus:Ralstonia]

LINKS: Ecology Home | Life Page: Burkholderiaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	4.075	4.871	0.070	0.845	0.327	1.809	0.328	0.152	0.038	0.001
10^thp	0.030	0.029	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	12.861	13.481	0.216	1.875	0.878	5.145	0.502	0.563	0.127	0.000
Stdev	5.880	6.034	0.107	2.034	0.651	3.564	1.323	0.348	0.087	0.004
Prev(%)	92.208	90.909	59.740	85.714	76.623	83.117	59.740	53.247	42.857	2.597

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.909	3.014	0.064	0.598	0.281	1.278	0.181	0.153	0.061	0.000
10^thp	0.000	0.055	0.000	0.000	0.000	0.018	0.000	0.000	0.000	0.000
90^thp	4.990	6.392	0.123	1.231	0.771	3.238	0.417	0.473	0.130	0.000
Stdev	2.978	4.547	0.283	1.313	0.543	1.692	0.490	0.363	0.163	0.006
Prev(%)	87.162	93.243	33.784	85.135	76.351	90.541	59.459	58.108	45.946	0.699

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.731	3.412	0.303	0.872	0.279	1.852	0.244	0.085	0.023	0.126	0.268	0.435	2.286	1.916	0.060	0.027	0.000	0.000
10^thp	0.013	0.032	0.000	0.000	0.000	0.009	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	7.114	8.953	0.300	1.810	0.683	3.644	0.500	0.260	0.068	0.198	0.230	0.322	5.193	2.849	0.026	0.072	0.000	0.000
Stdev	3.924	4.939	1.480	1.832	0.497	4.292	0.947	0.191	0.054	0.728	1.365	2.112	6.436	6.486	0.330	0.078	0.000	0.000
Prev(%)	90.066	92.053	68.531	84.932	77.181	90.000	61.310	56.000	43.226	48.667	41.379	49.008	72.414	64.055	15.493	14.865	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.026	4.245	0.381	1.435	0.489	1.690	0.429	0.188	0.055	0.187	0.332	0.655	3.208	1.833	0.147	0.386	0.004	0.013
10^thp	0.038	0.086	0.000	0.000	0.000	0.031	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	7.849	10.165	0.818	3.275	1.444	4.722	0.968	0.458	0.131	0.386	0.464	0.820	3.064	4.100	0.371	0.109	0.000	0.000
Stdev	4.511	6.087	1.206	3.215	0.848	2.780	1.320	0.514	0.172	1.044	2.356	3.716	10.987	7.182	0.543	3.074	0.026	0.176
Prev(%)	94.815	95.610	56.790	84.615	75.192	91.667	63.240	61.314	46.229	50.575	51.274	47.840	69.655	66.000	22.414	18.579	6.806	1.217

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.847	1.270	0.081	0.343	0.134	0.055	0.016	0.141	0.081	0.000
10^thp	0.000	0.007	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.736	1.868	0.126	1.083	0.266	0.093	0.034	0.048	0.064	0.000
Stdev	2.247	3.765	0.281	0.788	0.242	0.141	0.025	0.668	0.341	0.002
Prev(%)	82.432	88.235	67.442	85.714	85.714	82.000	72.727	67.742	45.000	5.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.631	3.125	1.294	0.091	0.864	0.060	1.629	0.003	0.002	0.039	0.025	0.010	0.023	0.100	0.006	0.040	0.018	0.000
10^thp	0.038	0.040	0.000	0.000	0.000	0.060	0.091	0.000	0.000	0.000	0.000	0.000	0.000	0.100	0.000	0.000	0.000	0.000
90^thp	4.412	7.755	1.911	0.380	1.975	0.060	3.787	0.000	0.000	0.080	0.000	0.020	0.019	0.100	0.030	0.154	0.000	0.000
Stdev	1.927	4.903	4.048	0.197	2.865	0.000	3.955	0.013	0.006	0.147	0.176	0.029	0.093	0.000	0.014	0.065	0.113	0.001
Prev(%)	91.667	92.929	58.333	35.294	70.479	100.000	87.500	6.250	8.000	38.967	6.757	16.667	15.625	100.000	18.182	42.857	8.586	0.182

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