HOMD ::Genus:Arachnia

Genus: Arachnia

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Arachnia Each rank name is a link to abundance plots at that rank:

Lower rank member(s): [Species:Arachnia propionica] [Species:Arachnia rubra]

LINKS: Ecology Home | Life Page: Arachnia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.725	0.902	0.013	0.042	0.010	0.020	0.007	0.008	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.005	2.825	0.024	0.071	0.035	0.068	0.000	0.009	0.000	0.000
Stdev	0.963	1.487	0.047	0.154	0.034	0.059	0.028	0.034	0.013	0.000
Prev(%)	83.117	84.416	15.584	33.766	20.779	25.974	7.792	10.390	7.792	0.000

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.568	0.625	0.009	0.018	0.016	0.019	0.009	0.008	0.001	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.583	1.474	0.000	0.063	0.028	0.060	0.021	0.016	0.000	0.000
Stdev	0.867	1.175	0.089	0.049	0.107	0.042	0.049	0.033	0.006	0.005
Prev(%)	83.784	85.811	4.054	26.351	20.946	29.730	12.162	12.162	3.378	2.098

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.053	0.860	0.027	0.014	0.000	0.000	0.013	0.000	0.000	0.000	0.009	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.009	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.891	2.253	0.000	0.022	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	1.812	1.426	0.204	0.088	0.000	0.000	0.204	0.000	0.000	0.000	0.131	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	90.066	88.742	9.091	17.808	0.000	0.000	3.869	0.000	0.000	0.000	2.586	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.815	0.830	0.029	0.024	0.011	0.000	0.019	0.000	0.000	0.000	0.031	0.017	0.102	0.000	0.000	0.000	0.000	0.000
10^thp	0.020	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.224	2.260	0.056	0.060	0.033	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.012	0.000	0.000	0.000	0.000	0.000
Stdev	1.240	1.392	0.135	0.086	0.041	0.000	0.141	0.000	0.000	0.000	0.424	0.215	0.978	0.000	0.000	0.000	0.000	0.000
Prev(%)	93.333	89.024	14.568	24.318	15.090	0.000	7.788	0.000	0.000	0.000	5.414	5.247	11.034	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.485	0.409	0.046	0.017	0.036	0.005	0.005	0.001	0.002	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.329	1.127	0.018	0.041	0.104	0.013	0.008	0.004	0.004	0.000
Stdev	1.033	0.842	0.245	0.024	0.066	0.009	0.020	0.002	0.007	0.000
Prev(%)	81.081	82.353	51.163	65.714	57.143	56.000	33.333	25.806	22.500	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	3.564	1.910	1.079	0.222	0.036	0.000	0.009	0.003	0.000	0.003	0.008	0.004	0.177	0.010	0.000	0.005	0.001	0.000
10^thp	0.009	0.030	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.010	0.000	0.000	0.000	0.000
90^thp	9.040	4.685	1.365	0.350	0.090	0.000	0.021	0.000	0.000	0.000	0.000	0.000	0.000	0.010	0.000	0.007	0.000	0.000
Stdev	5.179	3.091	3.415	0.709	0.145	0.000	0.025	0.013	0.000	0.041	0.062	0.017	1.002	0.000	0.000	0.016	0.009	0.002
Prev(%)	87.500	93.434	75.000	29.412	19.947	0.000	12.500	6.250	0.000	3.991	2.703	8.333	3.125	100.000	0.000	14.286	0.505	0.182

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