HOMD ::Genus:Lactobacillus

Genus: Lactobacillus

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
Lower rank member(s): show[+]

[Species:Lactobacillus acidophilus] [Species:Lactobacillus crispatus] [Species:Lactobacillus gasseri] [Species:Lactobacillus iners] [Species:Lactobacillus jensenii]
[Species:Lactobacillus johnsonii] [Species:Lactobacillus ultunensis]

LINKS: Ecology Home | Life Page: Lactobacillus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Lactobacillus

Human Microbiome Project Mapping (Data from healthy subjects. - manuscript in revision)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0.25	0.01	0.02	0.02	0.02	0.03	0	0.01	0.01	1.35	0.09	0.08	2.78	74.36	71.83	71.59	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0.01	0.02	0.01	0	0	0	0	0	0	2.78	31.23	3.76	1.68	0
90^thp	0.01	0.01	0	0.04	0.03	0.02	0.09	0.01	0.02	0.01	0.20	0.11	0.07	2.78	98.60	98.56	99.16	0.01
Stdev	0.01	4.94	0.02	0.03	0.02	0	0.04	0	0.01	0.03	8.72	0.29	0.34	0	47.76	43.20	37.07	0.10
Prev(%)	0	0.76	0	0	0	0	0	0	0	0.24	4.62	8.70	6.67	100.00	100.00	87.50	98.94	1.07

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.10	0.01	0	0.09	0.01	0.04	0.01	0	0.07	0.53	0.11	0.19	1.62	1.17	81.49	87.08	90.19	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44.88	68.49	75.86	0
90^thp	0.01	0.04	0	0.07	0	0.11	0	0	0.03	0.27	0.23	0.22	3.61	3.17	98.33	98.84	99.83	0
Stdev	1.23	0.03	0	0.54	0.07	0.13	0.04	0	0.69	4.83	0.43	1.54	7.68	2.91	24.32	20.50	21.63	0
Prev(%)	13.24	21.85	0	39.04	6.04	27.69	6.55	0	29.03	44.67	41.67	35.69	55.75	54.38	100.00	100.00	100.00	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.05	0.02	0.03	0.05	0.15	0	0.03	0.02	0.01	0.64	0.92	0.96	1.58	2.10	80.28	86.38	87.08	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18.63	43.98	34.80	0
90^thp	0.03	0.02	0	0	0.06	0	0	0.01	0	0.40	0.35	0.56	3.48	4.85	99.34	99.79	99.93	0
Stdev	0.51	0.22	0.32	0.79	1.92	0	0.33	0.31	0.18	6.01	7.65	7.87	6.42	9.13	29.69	26.31	28.77	0.06
Prev(%)	21.73	14.39	8.89	8.69	18.41	0	9.35	11.19	7.79	48.28	36.94	39.20	57.24	62.67	99.42	99.45	98.43	5.60

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.01	0	0	0	0.01	0	0.01	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.01	0	0	0	0	0	0
Stdev	0.04	0	0	0.01	0.02	0.02	0.07	0	0	0
Prev(%)	10.81	8.82	4.65	20.00	14.29	8.00	6.06	3.23	0	10.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - manuscript in revision)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.25	0	0.10	0.01	0	0.03	0	0.58	0	0.91	0.06	0.09	3.72	85.28	82.51	82.48	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	3.72	76.05	25.61	11.22	0
90^thp	0	0	0	0.02	0	0	0.07	0	0	0	0	0.02	0.07	3.72	99.49	99.13	100.00	0
Stdev	0	5.01	0.01	0.39	0.19	0	0.04	0	2.91	0.03	8.56	0.26	0.32	0	28.77	34.63	32.37	0.06
Prev(%)	0	1.51	4.17	11.77	2.13	0	37.50	0	8.00	0.94	7.21	20.83	28.13	100.00	100.00	92.86	100.00	1.82

[Species:Lactobacillus acidophilus]	[Species:Lactobacillus crispatus]	[Species:Lactobacillus gasseri]	[Species:Lactobacillus iners]	[Species:Lactobacillus jensenii]
[Species:Lactobacillus johnsonii]	[Species:Lactobacillus ultunensis]

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