HOMD ::klass::Bacilli

Class: Bacilli

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli
Lower rank member(s): [Order:Caryophanales] [Order:Lactobacillales]
Genera:

LINKS: Ecology Home | Life Page: Bacilli

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	15.552	17.533	60.192	62.790	52.162	17.975	26.373	24.476	22.309	23.700	22.250	21.934	21.152	20.534	82.978	88.518	91.317	21.149
10^thp	5.257	6.998	36.327	40.678	25.831	4.690	8.426	7.461	8.793	6.099	2.081	2.063	2.791	2.622	45.132	72.940	77.568	3.314
90^thp	28.965	28.584	85.070	86.083	80.032	31.032	50.736	51.945	39.788	44.707	55.028	55.053	48.491	52.703	98.997	99.492	99.917	43.690
Stdev	12.026	9.321	19.046	16.691	18.643	11.288	17.068	17.616	11.727	16.952	21.142	21.685	21.245	21.328	24.118	20.434	21.187	16.734
Prev(%)	100.000	100.000	100.000	100.000	100.000	99.231	100.000	100.000	100.000	100.000	99.713	99.717	99.425	99.539	100.000	100.000	100.000	100.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	6.594	9.387	18.784	24.179	15.476	4.263	6.018	5.718	5.195	7.770	6.121	4.822	4.741	5.924	80.914	86.972	87.689	1.506
10^thp	1.625	3.206	5.686	7.532	4.612	1.344	0.890	1.094	1.240	0.513	0.107	0.102	0.202	0.241	18.878	45.194	36.003	0.070
90^thp	13.370	17.847	40.471	48.644	30.503	8.580	13.418	11.575	10.615	20.331	17.925	14.101	11.112	11.831	99.536	99.932	99.984	3.652
Stdev	6.397	6.549	14.921	15.793	11.366	3.149	6.132	6.561	4.485	11.139	12.066	11.148	8.348	11.060	29.819	26.351	28.721	2.810
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	99.617	99.682	97.840	97.931	98.000	99.425	99.454	98.953	96.837

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	22.279	32.972	63.343	63.041	53.578	47.927	43.076	42.581	45.228	16.617
10^thp	3.760	17.941	34.343	36.358	33.330	21.569	23.370	18.333	22.801	2.210
90^thp	48.820	54.940	91.788	88.198	79.193	78.338	64.597	68.292	76.906	32.736
Stdev	16.571	14.762	23.426	19.131	19.866	22.522	16.673	20.626	21.544	23.932
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	8.123	9.036	4.003	40.814	43.525	49.080	12.049	8.833	11.695	15.146	16.328	10.908	8.404	12.650	85.600	83.461	82.905	0.315
10^thp	2.085	2.550	0.274	17.148	21.130	49.080	6.075	2.695	3.478	5.195	0.960	1.258	0.623	12.650	76.050	27.253	15.278	0.000
90^thp	14.384	16.115	12.703	74.114	66.140	49.080	17.556	15.150	17.670	27.990	37.007	23.325	20.928	12.650	99.490	99.283	100.000	0.770
Stdev	6.045	7.695	5.138	23.428	17.435	0.000	5.802	5.990	14.320	9.865	17.613	11.151	8.234	0.000	28.540	33.697	32.050	1.614
Prev(%)	100.000	100.000	95.833	100.000	100.000	100.000	100.000	100.000	100.000	100.000	95.045	100.000	100.000	100.000	100.000	100.000	100.000	60.182

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	17.825	20.232	69.580	70.649	59.595	20.399	34.130	35.699	29.756	0.077
10^thp	6.171	8.619	43.284	46.764	36.536	5.571	11.508	9.769	11.693	0.000
90^thp	32.161	34.838	91.271	92.283	83.079	35.347	60.776	69.085	49.709	0.224
Stdev	13.300	10.654	17.947	16.375	17.574	11.750	19.942	22.718	14.700	0.107
Prev(%)	100.000	100.000	100.000	100.000	100.000	98.701	100.000	100.000	100.000	67.532

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	12.519	16.575	52.471	60.702	47.939	16.165	30.848	27.554	25.125	0.036
10^thp	2.710	5.627	28.501	36.215	25.324	6.471	8.454	8.234	8.144	0.000
90^thp	28.058	32.969	77.575	82.701	73.180	27.556	59.306	53.503	46.085	0.110
Stdev	9.826	11.159	18.448	17.407	17.958	8.657	18.859	17.712	15.082	0.068
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	48.252

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