HOMD ::phylum::Bacillota

Phylum: Bacillota

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota
Lower rank member(s): [Class:Bacilli] [Class:Clostridia] [Class:Erysipelotrichia] [Class:Negativicutes]
Genera:

LINKS: Ecology Home | Life Page: Bacillota

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	23.216	23.040	66.268	67.913	62.291	39.947	44.098	41.622	39.580	26.876	24.179	24.177	22.537	22.231	86.548	91.360	93.657	23.599
10^thp	12.167	11.372	42.290	47.792	42.337	25.064	26.553	24.314	23.904	8.209	2.293	2.140	3.130	3.165	68.231	76.916	86.721	5.504
90^thp	38.212	34.003	87.109	87.750	84.121	54.309	64.776	63.396	55.937	46.913	56.894	58.026	54.525	53.121	99.372	99.565	99.938	46.882
Stdev	12.347	9.970	16.903	14.880	15.167	12.496	15.338	15.769	12.213	17.095	21.573	22.600	21.602	21.602	17.662	13.707	15.496	16.653
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	99.713	99.717	99.425	99.539	100.000	100.000	100.000	100.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	17.343	17.182	30.238	33.988	35.346	36.223	32.073	29.277	30.438	13.395	10.072	10.763	7.602	9.989	85.396	89.538	89.894	3.871
10^thp	9.016	8.994	10.081	14.759	20.320	20.018	15.957	15.868	15.808	2.087	0.281	0.229	0.756	1.058	51.521	65.704	60.683	0.354
90^thp	28.184	27.868	55.162	55.091	52.712	54.444	49.291	45.413	48.570	29.973	27.621	31.863	16.471	21.393	99.661	99.951	99.986	7.992
Stdev	8.834	7.843	17.815	15.713	12.646	13.253	12.857	11.556	12.359	12.555	15.053	17.302	9.787	12.965	23.652	21.724	24.312	5.080
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	99.074	98.621	100.000	100.000	100.000	100.000	99.757

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	32.197	41.388	68.167	68.665	59.768	56.260	55.257	53.416	55.268	20.267
10^thp	16.561	23.566	41.979	49.205	39.202	33.572	39.621	33.858	34.548	2.616
90^thp	57.449	66.062	93.396	92.961	84.656	82.349	73.480	74.438	77.099	46.690
Stdev	15.868	15.557	20.285	17.464	18.479	20.006	14.445	17.594	18.068	24.307
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	15.497	14.821	16.840	48.908	49.922	54.340	28.166	25.637	29.955	35.242	18.622	12.075	10.596	13.470	86.151	84.296	83.897	6.816
10^thp	6.449	6.420	10.122	23.710	27.830	54.340	19.030	13.915	16.572	22.105	2.267	1.820	0.623	13.470	76.280	34.249	21.189	1.039
90^thp	27.260	25.235	29.925	79.100	73.155	54.340	38.256	39.745	40.368	50.290	40.618	23.440	22.408	13.470	99.490	99.450	100.000	14.737
Stdev	7.508	8.756	8.346	22.577	16.912	0.000	10.014	11.333	13.330	11.330	18.144	12.265	11.297	0.000	27.366	31.989	30.230	6.418
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	96.847	100.000	100.000	100.000	100.000	100.000	100.000	100.000

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	24.422	25.375	74.537	74.909	68.459	42.890	51.170	51.096	46.197	1.834
10^thp	12.075	12.590	49.724	55.311	51.143	27.591	31.573	29.944	29.155	0.000
90^thp	39.912	39.789	93.789	93.059	87.670	56.796	73.612	76.322	63.484	4.376
Stdev	13.156	10.493	16.376	14.183	14.117	11.512	16.447	18.254	13.320	5.526
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	84.416

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	22.007	24.034	57.778	65.289	57.836	39.439	47.308	41.989	41.255	0.721
10^thp	10.802	13.292	34.844	44.921	39.397	24.842	25.368	21.905	20.364	0.000
90^thp	36.940	39.222	80.657	85.409	79.309	54.208	69.795	64.439	64.015	2.628
Stdev	10.543	10.925	17.119	15.447	15.315	11.385	16.369	15.862	16.563	1.424
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	75.524

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