Species: Actinomyces sp. HMT-170 (HMT-170)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
Notes:
Reads equidistant to HMT-170 and HMT-893 were assigned to each taxon in proportion to the abundance of HMT-170 and HMT-893 individually at this body site (SUPP).
Reads equidistant to HMT-170 and HMT-893 were assigned to each taxon in proportion to the abundance of HMT-170 and HMT-893 individually at this body site (SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.790 | 1.076 | 0.169 | 0.103 | 0.053 | 0.098 | 0.061 | 0.000 | 0.000 | 0.000 | 0.000 | 0.021 | 0.056 | 0.046 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.018 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 2.201 | 2.854 | 0.387 | 0.227 | 0.131 | 0.231 | 0.047 | 0.000 | 0.000 | 0.000 | 0.000 | 0.031 | 0.121 | 0.066 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 1.478 | 1.720 | 0.573 | 0.298 | 0.115 | 0.257 | 0.613 | 0.000 | 0.000 | 0.000 | 0.000 | 0.113 | 0.188 | 0.213 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 86.093 | 92.053 | 55.245 | 64.384 | 64.430 | 70.769 | 24.107 | 0.000 | 0.000 | 0.000 | 0.000 | 18.130 | 25.862 | 18.894 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
Notes:
Reads equidistant to HMT-170 and HMT-171 were assigned to each taxon in proportion to the abundance of HMT-170 and HMT-171 individually at this body site (SUPP).
Reads equidistant to HMT-170 and HMT-171 were assigned to each taxon in proportion to the abundance of HMT-170 and HMT-171 individually at this body site (SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.391 | 0.475 | 0.058 | 0.247 | 0.122 | 0.108 | 0.059 | 0.036 | 0.000 | 0.000 | 0.000 | 0.056 | 0.181 | 0.169 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 1.042 | 1.488 | 0.077 | 0.660 | 0.270 | 0.260 | 0.040 | 0.079 | 0.000 | 0.000 | 0.000 | 0.052 | 0.222 | 0.107 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.785 | 1.030 | 0.678 | 0.485 | 0.366 | 0.216 | 0.486 | 0.242 | 0.000 | 0.000 | 0.000 | 0.436 | 0.931 | 1.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 79.259 | 78.293 | 24.198 | 66.749 | 59.335 | 66.071 | 18.692 | 32.847 | 0.000 | 0.000 | 0.000 | 15.741 | 35.172 | 26.667 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.150 | 0.112 | 0.012 | 0.010 | 0.026 | 0.002 | 0.001 | 0.006 | 0.000 | 0.000 |
| 10thp | 0.005 | 0.005 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.368 | 0.239 | 0.031 | 0.029 | 0.039 | 0.003 | 0.004 | 0.003 | 0.000 | 0.000 |
| Stdev | 0.285 | 0.168 | 0.028 | 0.015 | 0.086 | 0.003 | 0.004 | 0.032 | 0.001 | 0.000 |
| Prev(%) | 93.243 | 97.059 | 48.837 | 77.143 | 64.286 | 34.000 | 21.212 | 12.903 | 5.000 | 0.000 |
HMP Metaphlan (not published)
No Notes
Eren V1-V3 www.pnas.org
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.714 | 1.156 | 0.064 | 0.167 | 0.040 | 0.042 | 0.125 | 0.005 | 0.001 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 2.169 | 2.555 | 0.112 | 0.495 | 0.102 | 0.081 | 0.046 | 0.023 | 0.000 | 0.000 |
| Stdev | 1.103 | 2.430 | 0.267 | 0.380 | 0.113 | 0.120 | 1.001 | 0.013 | 0.010 | 0.000 |
| Prev(%) | 80.519 | 83.117 | 32.468 | 61.039 | 33.766 | 36.364 | 18.182 | 12.987 | 1.299 | 0.000 |
Eren V3-V5 www.pnas.org
Notes:
Reads equally close to A. naeslundii, A. sp. HMT 170, and A. sp. HMT 171 were assigned one-third to each taxon.
Reads equally close to A. naeslundii, A. oris, and A. sp. HMT 169, 170, 171, and 175 were divided equally among taxa.
Reads equally close to A. naeslundii, A. sp. HMT 170, and A. sp. HMT 171 were assigned one-third to each taxon.
Reads equally close to A. naeslundii, A. oris, and A. sp. HMT 169, 170, 171, and 175 were divided equally among taxa.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.151 | 0.165 | 0.006 | 0.025 | 0.009 | 0.006 | 0.004 | 0.004 | 0.001 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.417 | 0.342 | 0.008 | 0.049 | 0.014 | 0.018 | 0.006 | 0.006 | 0.000 | 0.000 |
| Stdev | 0.273 | 0.318 | 0.023 | 0.074 | 0.065 | 0.009 | 0.029 | 0.028 | 0.004 | 0.001 |
| Prev(%) | 87.162 | 84.459 | 20.270 | 49.324 | 34.459 | 39.189 | 16.216 | 15.541 | 8.784 | 1.399 |
