HOMD ::Species:Aggregatibacter sp. HMT-458

Taxonomy: V4.2 | 16S rRNA RefSeq: V16.03 | Genomic RefSeq: V11.02 | Viruses: V1.2

Species: Aggregatibacter sp. HMT-458 (HMT-458)

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Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter sp. HMT-458 Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-458: Body Sites Data | HMT-458: Taxon Description | Life Page: Aggregatibacter sp. HMT-458

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

Eren V3-V5 www.pnas.org (data from healthy subjects)

Notes:
Reads equally close to A. sp. HMT 458 and A. sp. HMT 898 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.293	0.401	0.530	0.401	0.074	0.294	0.060	0.185	0.019	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.010	0.000	0.000	0.000	0.000
90^thp	0.984	1.133	1.239	0.772	0.188	0.702	0.126	0.390	0.046	0.000
Stdev	0.426	0.540	1.387	0.873	0.158	0.462	0.120	0.543	0.041	0.001
Prev(%)	68.243	84.459	78.378	89.189	64.189	89.865	66.216	66.892	48.649	0.699

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.044	0.000	0.032	0.000	0.039	0.000	0.009	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.124	0.000	0.060	0.000	0.098	0.000	0.014	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.000	0.135	0.000	0.107	0.000	0.109	0.000	0.046	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	0.000	42.384	0.000	39.041	0.000	33.846	0.000	13.333	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.329	0.670	0.000	0.528	0.106	0.387	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.017	1.909	0.000	1.381	0.273	1.027	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.619	1.028	0.000	1.236	0.230	0.756	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	68.395	82.927	0.000	69.479	53.197	76.190	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.475	0.590	0.086	0.214	0.438	0.077	0.101	0.035	0.006	0.000
10^thp	0.000	0.000	0.000	0.000	0.001	0.000	0.000	0.000	0.000	0.000
90^thp	1.317	1.531	0.231	0.487	0.732	0.225	0.053	0.101	0.019	0.000
Stdev	1.272	1.330	0.206	0.384	1.479	0.131	0.492	0.086	0.011	0.000
Prev(%)	68.919	76.471	62.791	85.714	89.286	82.000	63.636	54.839	50.000	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes