HOMD ::Species:Capnocytophaga gingivalis

Species: Capnocytophaga gingivalis (HMT-337)

Full Lineage: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga gingivalis Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-337: Body Sites Data | HMT-337: Taxon Description | Life Page: Capnocytophaga gingivalis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

Notes:
reads equally close to C. gingivalis and C. granulosa were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.431	1.521	0.053	0.220	0.043	0.199	0.193	0.291	0.127	0.001
10^thp	0.042	0.186	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.466	3.192	0.053	0.378	0.114	0.383	0.511	1.038	0.351	0.000
Stdev	1.532	1.681	0.324	0.556	0.096	0.353	0.434	0.547	0.290	0.005
Prev(%)	94.805	96.104	32.468	80.519	59.740	81.818	63.636	71.429	61.039	2.597

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.565	1.975	0.034	0.135	0.067	0.236	0.192	0.323	0.142	0.000
10^thp	0.102	0.244	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.464	4.106	0.069	0.336	0.168	0.586	0.522	0.988	0.383	0.000
Stdev	2.045	1.980	0.183	0.309	0.108	0.266	0.450	0.561	0.311	0.001
Prev(%)	96.622	96.622	22.297	66.892	60.135	85.811	62.162	72.297	58.108	0.699

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

Notes:
Reads equidistant to HMT-325 and HMT-337 were assigned to each taxon in proportion to the abundance of HMT-325 and HMT-337 individually at this body site (SUBP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.059	2.372	0.064	0.282	0.091	0.322	0.255	0.431	0.265	0.000	0.018	0.017	0.037	0.000	0.000	0.000	0.000	0.000
10^thp	0.152	0.279	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	5.111	5.400	0.179	0.618	0.235	0.797	0.638	1.067	0.745	0.000	0.014	0.000	0.013	0.000	0.000	0.000	0.000	0.000
Stdev	2.087	2.319	0.163	0.681	0.160	0.545	0.584	0.842	0.679	0.000	0.116	0.168	0.200	0.000	0.000	0.000	0.000	0.000
Prev(%)	96.689	100.000	47.552	80.822	67.114	79.231	63.393	77.333	63.871	0.000	11.494	7.932	11.494	0.000	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.964	2.347	0.113	0.339	0.131	0.339	0.386	0.456	0.223	0.000	0.147	0.151	0.305	0.171	0.000	0.000	0.000	0.000
10^thp	0.158	0.322	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	4.702	5.104	0.241	0.768	0.350	0.799	1.076	1.453	0.607	0.000	0.109	0.088	0.343	0.320	0.000	0.000	0.000	0.000
Stdev	2.280	2.127	0.386	1.005	0.226	0.659	0.823	0.759	0.508	0.000	0.723	1.106	1.393	0.764	0.000	0.000	0.000	0.000
Prev(%)	98.765	99.268	38.025	74.938	61.381	86.607	65.732	75.182	69.343	0.000	21.019	18.519	24.828	20.667	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

Notes:
Reads equally close to HMT 325 and 337 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.973	1.354	0.082	0.062	0.125	0.097	0.075	0.044	0.099	0.000
10^thp	0.003	0.077	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.566	4.263	0.368	0.224	0.331	0.259	0.264	0.152	0.500	0.000
Stdev	2.636	1.880	0.134	0.091	0.290	0.167	0.131	0.077	0.191	0.000
Prev(%)	95.946	100.000	79.070	80.000	78.571	82.000	75.758	58.065	65.000	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.973	1.781	0.289	0.062	0.244	0.020	0.133	0.881	0.616	0.308	0.008	0.000	0.003	0.000	0.000	0.099	0.005	0.002
10^thp	0.255	0.310	0.000	0.000	0.000	0.020	0.065	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.482	3.825	0.520	0.174	0.570	0.020	0.195	3.495	2.138	0.870	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	2.507	1.503	0.637	0.121	0.880	0.000	0.065	1.532	1.125	0.750	0.101	0.000	0.013	0.000	0.000	0.371	0.050	0.025
Prev(%)	100.000	98.485	58.333	35.294	62.500	100.000	100.000	62.500	68.000	72.300	1.351	0.000	6.250	0.000	0.000	7.143	2.020	0.545

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