HOMD ::Species:Schaalia lingnae

Species: Schaalia lingnae (HMT-181)

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Schaalia; Schaalia lingnae Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-181: Body Sites Data | HMT-181: Taxon Description | Life Page: Schaalia lingnae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Eren V1-V3 www.pnas.org (data from healthy subjects)

Notes:
reads equally close to S. lingnae [Not Validly Published], S. sp. HMT 172, and S. sp. HMT 180 were assigned one third to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.008	0.005	0.034	0.192	0.756	0.513	0.580	0.543	1.393	0.002
10^thp	0.000	0.000	0.000	0.000	0.067	0.014	0.067	0.070	0.179	0.000
90^thp	0.022	0.021	0.078	0.463	1.410	1.273	1.135	1.164	3.069	0.000
Stdev	0.031	0.014	0.092	0.343	0.941	0.586	0.547	0.562	1.505	0.011
Prev(%)	16.883	12.987	33.766	79.221	96.104	89.610	96.104	97.403	100.000	9.091

Eren V3-V5 www.pnas.org (data from healthy subjects)

Notes:
Reads equally close to S. meyeri, S. odontolytica, S. lingnae [Not Validly Published], S. sp. HMT 172, and S. sp. HMT 180 were divided equally among taxa.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.047	0.022	0.026	0.103	0.427	0.269	0.551	0.463	0.815	0.000
10^thp	0.000	0.000	0.000	0.000	0.096	0.053	0.102	0.053	0.132	0.000
90^thp	0.084	0.055	0.084	0.291	0.998	0.643	1.184	1.038	2.051	0.000
Stdev	0.175	0.043	0.071	0.140	0.365	0.301	0.483	0.493	0.737	0.002
Prev(%)	70.946	69.595	39.865	89.189	99.324	100.000	97.973	97.973	99.324	5.594

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.000	0.000	0.000	0.334	0.219	0.370	0.285	0.670	0.000	0.000	0.000	0.000	0.051	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.022	0.017	0.127	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.729	0.564	0.812	0.564	1.357	0.000	0.000	0.000	0.000	0.045	0.000	0.000	0.000	0.000
Stdev	0.000	0.000	0.000	0.000	0.424	0.339	0.426	0.348	0.617	0.000	0.000	0.000	0.000	0.225	0.000	0.000	0.000	0.000
Prev(%)	0.000	0.000	0.000	0.000	85.906	76.154	91.071	91.333	98.710	0.000	0.000	0.000	0.000	16.590	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.000	0.000	0.083	0.569	0.196	0.422	0.280	0.747	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.022	0.000	0.000	0.014	0.085	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.248	1.303	0.428	1.037	0.675	1.745	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.000	0.000	0.000	0.145	0.719	0.254	0.481	0.349	0.898	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	0.000	0.000	0.000	50.372	91.049	86.012	88.785	90.998	97.080	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.002	0.006	0.080	0.025	0.117	0.506	0.219	0.293	0.524	0.000
10^thp	0.000	0.000	0.000	0.001	0.008	0.029	0.032	0.013	0.002	0.000
90^thp	0.006	0.006	0.211	0.066	0.255	1.021	0.445	0.489	1.215	0.000
Stdev	0.006	0.023	0.202	0.030	0.114	0.634	0.205	0.517	0.915	0.000
Prev(%)	24.324	32.353	62.791	88.571	92.857	98.000	96.970	96.774	90.000	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

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