HOMD ::Species:Selenomonas felix

Species: Selenomonas felix (HMT-136)

Full Lineage: Bacteria; Bacillota; Negativicutes; Selenomonadales; Selenomonadaceae; Selenomonas; Selenomonas felix Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-136: Body Sites Data | HMT-136: Taxon Description | Life Page: Selenomonas felix

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

Notes:
reads equally close to S. sp. HMT 136 and S. sp. HMT 149 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.021	0.010	0.004	0.022	0.124	1.456	0.590	0.411	0.204	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.014	0.000	0.000	0.000	0.000
90^thp	0.023	0.023	0.011	0.085	0.305	4.397	1.466	1.350	0.459	0.000
Stdev	0.125	0.035	0.010	0.043	0.213	1.941	0.903	0.782	0.533	0.000
Prev(%)	19.481	15.584	18.182	41.558	70.130	90.909	83.117	84.416	72.727	0.000

Eren V3-V5 www.pnas.org (data from healthy subjects)

Notes:
Reads equally close to S. sp. HMT 136, 149, and 478 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.022	0.012	0.002	0.016	0.060	0.748	0.234	0.162	0.065	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.006	0.000	0.000	0.000	0.000
90^thp	0.053	0.031	0.000	0.040	0.184	2.374	0.582	0.479	0.191	0.000
Stdev	0.061	0.035	0.007	0.034	0.093	1.129	0.312	0.307	0.112	0.000
Prev(%)	41.892	28.378	8.784	47.297	71.622	89.865	87.162	75.676	66.216	0.000

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

Notes:
Reads equidistant to HMT-136 and HMT-478 were assigned to each taxon in proportion to the abundance of HMT-136 and HMT-478 individually at these sites (SAL,THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.049	0.000	0.000	0.000	0.152	1.026	0.374	0.354	0.141	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.121	0.000	0.000	0.000	0.397	2.925	0.946	1.083	0.368	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.128	0.000	0.000	0.000	0.299	1.413	0.607	0.602	0.249	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	45.695	0.000	0.000	0.000	70.470	81.538	82.738	83.333	76.129	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

Notes:
Some of the reads equidistant from these taxa (136-149-478) are included in HMT-136 because they are too close to differentiate at these sites (BMU,HPA,PTO,SAL,THR,TDO).HMTs 136-149-478 were not present singularly so these reads were split evenly at this these sites (LAF,SUBP,SUPP)

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.023	0.011	0.000	0.117	0.327	2.821	0.972	0.642	0.327	0.000	0.000	0.000	0.036	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.028	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.057	0.024	0.000	0.304	0.889	7.654	2.398	1.735	0.931	0.000	0.000	0.000	0.015	0.000	0.000	0.000	0.000	0.000
Stdev	0.070	0.040	0.000	0.348	0.523	4.277	1.363	1.125	0.591	0.000	0.000	0.000	0.275	0.000	0.000	0.000	0.000	0.000
Prev(%)	38.272	29.756	0.000	46.154	76.471	93.155	89.408	87.348	79.075	0.000	0.000	0.000	11.724	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.006	0.008	0.012	0.008	0.011	0.033	0.059	0.062	0.017	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.023	0.029	0.046	0.012	0.015	0.105	0.178	0.111	0.053	0.000
Stdev	0.013	0.013	0.033	0.032	0.034	0.055	0.112	0.147	0.031	0.000
Prev(%)	36.486	50.000	34.884	34.286	57.143	74.000	81.818	77.419	60.000	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.010	0.017	0.123	0.000	0.001	0.000	0.034	0.002	0.012	0.005	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.007	0.030	0.397	0.000	0.000	0.000	0.081	0.000	0.020	0.010	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.040	0.069	0.261	0.000	0.010	0.000	0.095	0.007	0.043	0.030	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	12.500	18.434	41.667	0.000	2.128	0.000	12.500	6.250	16.000	11.268	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

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