Species: Selenomonas noxia (HMT-130)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Eren V1-V3 www.pnas.org
(data from healthy subjects)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.817 | 0.675 | 0.022 | 0.023 | 0.008 | 0.221 | 0.017 | 0.009 | 0.002 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 2.569 | 1.649 | 0.029 | 0.072 | 0.025 | 0.692 | 0.041 | 0.030 | 0.000 | 0.000 |
| Stdev | 1.551 | 1.274 | 0.083 | 0.050 | 0.025 | 0.324 | 0.059 | 0.023 | 0.014 | 0.004 |
| Prev(%) | 71.429 | 74.026 | 15.584 | 33.766 | 18.182 | 68.831 | 18.182 | 19.481 | 5.195 | 1.299 |
Eren V3-V5 www.pnas.org
(data from healthy subjects)
Notes:
Reads equally close to S. flueggei, S. noxia, and S. sp. HMT 388 were assigned one-third to each taxon.
Reads equally close to S. flueggei, S. noxia, and S. sp. HMT 388 were assigned one-third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.230 | 0.251 | 0.004 | 0.015 | 0.005 | 0.097 | 0.011 | 0.010 | 0.002 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.619 | 0.674 | 0.001 | 0.042 | 0.014 | 0.195 | 0.028 | 0.025 | 0.007 | 0.000 |
| Stdev | 0.315 | 0.312 | 0.025 | 0.035 | 0.017 | 0.171 | 0.031 | 0.032 | 0.006 | 0.001 |
| Prev(%) | 84.459 | 80.405 | 10.135 | 41.892 | 25.676 | 81.757 | 33.108 | 34.459 | 15.541 | 0.699 |
Human Microbiome Project 16S RefSeq (V1-V3) (not published)
(data from healthy subjects)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.567 | 0.439 | 0.021 | 0.000 | 0.000 | 0.184 | 0.021 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.023 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 1.682 | 1.219 | 0.042 | 0.000 | 0.000 | 0.451 | 0.015 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 1.052 | 0.820 | 0.072 | 0.000 | 0.000 | 0.430 | 0.254 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.153 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 79.470 | 73.510 | 20.979 | 0.000 | 0.000 | 66.923 | 14.583 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 3.687 | 0.000 | 0.000 | 0.000 | 0.000 |
Human Microbiome Project 16S RefSeq (V3-V5) (not published)
(data from healthy subjects)
Notes:
Because HMT-920 is not present individually, all equidistant reads were assigned to HMT-130 at these sites (SAL,SUPP).
Reads equidistant to HMT-130 and HMT-920 were assigned to each taxon in proportion to the abundance of HMT-130 and HMT-920 individually at this body site (SUBP).
Some of the reads equidistant from these taxa (130-920-937) are included in HMT-130 because they are too close to differentiate at this site (SUPP).
Because HMT-920 is not present individually, all equidistant reads were assigned to HMT-130 at these sites (SAL,SUPP).
Reads equidistant to HMT-130 and HMT-920 were assigned to each taxon in proportion to the abundance of HMT-130 and HMT-920 individually at this body site (SUBP).
Some of the reads equidistant from these taxa (130-920-937) are included in HMT-130 because they are too close to differentiate at this site (SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.677 | 0.638 | 0.058 | 0.088 | 0.000 | 0.286 | 0.000 | 0.022 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 2.065 | 1.924 | 0.079 | 0.203 | 0.000 | 0.695 | 0.000 | 0.041 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 1.086 | 0.933 | 0.306 | 0.303 | 0.000 | 0.527 | 0.000 | 0.108 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 84.198 | 78.780 | 20.741 | 39.206 | 0.000 | 79.167 | 0.000 | 23.358 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.208 | 0.895 | 0.014 | 0.031 | 0.011 | 0.004 | 0.004 | 0.010 | 0.001 | 0.001 |
| 10thp | 0.000 | 0.008 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.693 | 2.252 | 0.021 | 0.057 | 0.030 | 0.021 | 0.015 | 0.003 | 0.005 | 0.001 |
| Stdev | 0.393 | 1.413 | 0.048 | 0.077 | 0.020 | 0.008 | 0.007 | 0.048 | 0.003 | 0.002 |
| Prev(%) | 79.730 | 94.118 | 41.860 | 74.286 | 46.429 | 50.000 | 36.364 | 19.355 | 22.500 | 10.000 |
Human Microbiome Project Metaphlan (not published)
(data from healthy subjects)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.347 | 0.520 | 1.211 | 0.030 | 0.022 | 0.000 | 0.110 | 0.000 | 0.000 | 0.001 | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 | 0.157 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 1.217 | 1.480 | 3.958 | 0.014 | 0.020 | 0.000 | 0.276 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.537 | 0.822 | 1.601 | 0.116 | 0.119 | 0.000 | 0.220 | 0.000 | 0.000 | 0.011 | 0.017 | 0.000 | 0.000 | 0.000 | 0.000 | 0.588 | 0.000 | 0.001 |
| Prev(%) | 83.333 | 73.990 | 75.000 | 17.647 | 13.032 | 0.000 | 50.000 | 0.000 | 0.000 | 1.643 | 0.450 | 0.000 | 0.000 | 0.000 | 0.000 | 7.143 | 0.000 | 0.182 |
