Species: Streptococcus sp. HMT-056 (HMT-056)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
HMP 16S RefSeq (V3-V5) (not published)
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Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.189 | 0.230 | 0.138 | 0.218 | 0.307 | 0.220 | 0.224 | 0.165 | 0.177 | 0.000 |
| 10thp | 0.000 | 0.005 | 0.007 | 0.039 | 0.024 | 0.028 | 0.039 | 0.008 | 0.026 | 0.000 |
| 90thp | 0.274 | 0.635 | 0.386 | 0.538 | 0.670 | 0.440 | 0.556 | 0.316 | 0.428 | 0.000 |
| Stdev | 0.814 | 0.436 | 0.153 | 0.225 | 0.539 | 0.234 | 0.212 | 0.205 | 0.194 | 0.002 |
| Prev(%) | 87.838 | 94.118 | 97.674 | 100.000 | 100.000 | 100.000 | 100.000 | 93.548 | 100.000 | 5.000 |
HMP Metaphlan (not published)
No Notes
Eren V1-V3 www.pnas.org
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Notes:
reads equally close to S. parasanguinis clade 411,S. peroris, S. sp. HMT 056, and S. sp. HMT 057 were assigned one fourth to each taxon
reads equally close to S. parasanguinis clade 411,S. peroris, S. sp. HMT 056, and S. sp. HMT 057 were assigned one fourth to each taxon
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.045 | 0.060 | 0.072 | 0.061 | 0.065 | 0.041 | 0.053 | 0.070 | 0.115 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.005 | 0.000 |
| 90thp | 0.152 | 0.153 | 0.256 | 0.152 | 0.183 | 0.092 | 0.128 | 0.195 | 0.257 | 0.000 |
| Stdev | 0.092 | 0.128 | 0.153 | 0.102 | 0.072 | 0.095 | 0.110 | 0.087 | 0.129 | 0.000 |
| Prev(%) | 48.052 | 50.649 | 48.052 | 76.623 | 77.922 | 48.052 | 58.442 | 76.623 | 90.909 | 0.000 |
Eren V3-V5 www.pnas.org
** View Notes (mouse over) **
Notes:
Reads equally close to S. gordonii and S. sp. HMT 056 were assigned half to each taxon.
Reads equally close to S. gordonii and S. sp. HMT 056 were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.263 | 0.377 | 0.109 | 0.204 | 0.051 | 0.055 | 0.021 | 0.029 | 0.010 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.731 | 0.936 | 0.178 | 0.488 | 0.111 | 0.138 | 0.048 | 0.052 | 0.025 | 0.000 |
| Stdev | 0.514 | 0.553 | 0.353 | 0.369 | 0.117 | 0.084 | 0.056 | 0.131 | 0.031 | 0.002 |
| Prev(%) | 80.405 | 87.838 | 40.541 | 84.459 | 60.811 | 69.595 | 43.919 | 43.243 | 27.703 | 1.399 |
