Species: Streptococcus sp. HMT-066 (HMT-066)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
** View Notes (mouse over) **
Notes:
Reads equidistant to HMT-066 and HMT-073 were assigned to each taxon in proportion to the abundance of HMT-066 and HMT-073 individually at these sites (BMU,HPA,LAF,LRC,PTO,RAF,RRC,SAL,THR,TDO).
Reads equidistant to HMT-066 and HMT-073 were assigned to each taxon in proportion to the abundance of HMT-066 and HMT-073 individually at these sites (BMU,HPA,LAF,LRC,PTO,RAF,RRC,SAL,THR,TDO).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.000 | 0.000 | 0.000 | 0.038 | 0.074 | 0.061 | 0.037 | 0.045 | 0.110 | 0.020 | 0.020 | 0.012 | 0.014 | 0.036 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.000 | 0.000 | 0.000 | 0.074 | 0.280 | 0.149 | 0.106 | 0.113 | 0.284 | 0.040 | 0.031 | 0.013 | 0.003 | 0.041 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.000 | 0.000 | 0.000 | 0.107 | 0.157 | 0.237 | 0.093 | 0.082 | 0.254 | 0.123 | 0.090 | 0.095 | 0.078 | 0.181 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 0.000 | 0.000 | 0.000 | 54.795 | 75.839 | 56.923 | 61.905 | 77.333 | 85.161 | 16.333 | 21.839 | 15.581 | 12.069 | 15.207 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
No Notes
Dewhirst (35x9) (not published)
** View Notes (mouse over) **
Notes:
Reads equally close to HMT 066 and 707 were assigned half to each taxon.
Reads equally close to HMT 066 and 721 were assigned half to each taxon.
Reads equally close to HMT 066 and 411 were assigned half to each taxon.
Reads equally close to HMT 066 and 074 were assigned half to each taxon.
Reads equally close to HMT 066 and 707 were assigned half to each taxon.
Reads equally close to HMT 066 and 721 were assigned half to each taxon.
Reads equally close to HMT 066 and 411 were assigned half to each taxon.
Reads equally close to HMT 066 and 074 were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.081 | 0.141 | 0.631 | 1.130 | 1.225 | 1.828 | 1.124 | 1.300 | 1.372 | 0.002 |
| 10thp | 0.005 | 0.010 | 0.013 | 0.123 | 0.159 | 0.322 | 0.208 | 0.224 | 0.230 | 0.000 |
| 90thp | 0.167 | 0.425 | 1.819 | 2.287 | 2.811 | 4.089 | 2.247 | 3.104 | 3.261 | 0.000 |
| Stdev | 0.176 | 0.223 | 1.090 | 1.859 | 1.265 | 1.833 | 0.803 | 1.965 | 1.215 | 0.009 |
| Prev(%) | 97.297 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 96.774 | 100.000 | 5.000 |
HMP Metaphlan (not published)
No Notes
Eren V1-V3 www.pnas.org
** View Notes (mouse over) **
Notes:
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
reads equally close to S. parasanguinis clade 721 and S. sp. HMT 066 were assigned half to each taxon
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
reads equally close to S. parasanguinis clade 721 and S. sp. HMT 066 were assigned half to each taxon
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.692 | 0.761 | 4.794 | 4.756 | 3.744 | 1.199 | 2.005 | 2.094 | 1.227 | 0.006 |
| 10thp | 0.121 | 0.200 | 2.595 | 2.174 | 1.781 | 0.314 | 0.483 | 0.486 | 0.419 | 0.000 |
| 90thp | 1.484 | 1.620 | 6.947 | 7.289 | 6.175 | 2.175 | 4.336 | 4.866 | 2.379 | 0.012 |
| Stdev | 0.937 | 0.570 | 1.800 | 1.866 | 1.635 | 0.930 | 1.568 | 1.801 | 0.949 | 0.015 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 98.701 | 100.000 | 100.000 | 100.000 | 51.948 |
Eren V3-V5 www.pnas.org
** View Notes (mouse over) **
Notes:
Reads equally close to S. australis, S. cristatus clade 578, S. parasanguinis clades 411 and 721, S. sinensis, and S. sp. HMT 057 and 066 were divided equally among taxa.
Reads equally close to S. australis, S. cristatus clade 578, S. parasanguinis clades 411 and 721, S. sinensis, and S. sp. HMT 057 and 066 were divided equally among taxa.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.049 | 0.073 | 0.032 | 0.163 | 0.495 | 0.311 | 0.476 | 0.419 | 0.849 | 0.001 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.015 | 0.094 | 0.057 | 0.107 | 0.077 | 0.184 | 0.000 |
| 90thp | 0.119 | 0.159 | 0.099 | 0.416 | 1.050 | 0.667 | 1.016 | 0.936 | 1.746 | 0.003 |
| Stdev | 0.089 | 0.112 | 0.071 | 0.203 | 0.445 | 0.326 | 0.395 | 0.384 | 0.737 | 0.004 |
| Prev(%) | 79.054 | 86.486 | 56.081 | 99.324 | 100.000 | 100.000 | 99.324 | 97.973 | 100.000 | 16.084 |
