HOMD ::Species:Streptococcus sp. HMT-074

Species: Streptococcus sp. HMT-074 (HMT-074)

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus sp. HMT-074 Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-074: Body Sites Data | HMT-074: Taxon Description | Life Page: Streptococcus sp. HMT-074

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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HMP 16S RefSeq (V1-V3) (not published)

No Notes

HMP 16S RefSeq (V3-V5) (not published)

No Notes

Dewhirst (35x9) (not published)

** View Notes (mouse over) **

Notes:
Reads equally close to HMT 066 and 074 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.033	0.074	0.130	0.391	0.448	0.669	0.660	0.730	0.524	0.000
10^thp	0.001	0.004	0.005	0.021	0.056	0.068	0.048	0.070	0.026	0.000
90^thp	0.090	0.142	0.241	0.775	0.914	1.535	1.978	1.292	1.116	0.000
Stdev	0.059	0.142	0.250	0.686	0.394	0.701	0.827	1.206	0.717	0.000
Prev(%)	93.243	97.059	97.674	97.143	100.000	100.000	100.000	96.774	100.000	0.000

HMP Metaphlan (not published)

No Notes

Eren V1-V3 www.pnas.org

** View Notes (mouse over) **

Notes:
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.688	0.756	4.764	4.649	3.280	0.789	1.410	1.603	0.601	0.003
10^thp	0.121	0.200	2.595	2.124	1.203	0.174	0.164	0.208	0.131	0.000
90^thp	1.481	1.612	6.873	7.260	5.880	1.447	3.628	4.429	1.309	0.009
Stdev	0.934	0.566	1.800	1.915	1.770	0.579	1.512	1.784	0.487	0.004
Prev(%)	100.000	100.000	100.000	100.000	100.000	97.403	100.000	100.000	100.000	49.351

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to S. infantis clade 638, S. oralis subsp. dentisani clade 058, and S. sp. HMT 061 and 074 were assigned one-fourth to each taxon.

Reads equally close to S. agalactiae, S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. pyogenes, S. sanguinis, and S. sp. HMT 061 and 074 were assigned one-fifth each to S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. sanguinis, and S. sp. HMT 061 and 074.

Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.314	0.357	4.401	4.921	5.005	1.103	2.417	2.001	1.292	0.001
10^thp	0.007	0.012	0.132	1.174	0.962	0.299	0.341	0.210	0.380	0.000
90^thp	0.642	0.649	10.327	10.773	10.996	2.091	5.742	4.054	2.606	0.003
Stdev	0.678	0.984	4.519	3.796	4.093	0.778	2.651	2.395	0.942	0.005
Prev(%)	92.568	93.243	99.324	100.000	100.000	100.000	100.000	100.000	100.000	12.587

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