Subspecies: clade-575 (HMT-575)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Eren V1-V3 www.pnas.org
(data from healthy subjects)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.386 | 0.531 | 1.194 | 0.414 | 0.963 | 6.292 | 3.296 | 2.996 | 2.938 | 0.001 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.177 | 0.980 | 0.327 | 0.419 | 0.356 | 0.000 |
| 90thp | 1.076 | 1.448 | 2.652 | 1.222 | 2.031 | 12.760 | 7.970 | 6.616 | 6.294 | 0.000 |
| Stdev | 0.495 | 1.082 | 3.664 | 0.548 | 0.902 | 5.233 | 3.172 | 3.135 | 2.737 | 0.006 |
| Prev(%) | 84.416 | 81.818 | 66.234 | 85.714 | 98.701 | 97.403 | 98.701 | 100.000 | 98.701 | 3.896 |
Eren V3-V5 www.pnas.org
(data from healthy subjects)
Notes:
Reads equally close to C. curvus and C. concisus were assigned half to each taxon.
Reads equally close to C. curvus and C. concisus were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.079 | 0.108 | 0.190 | 0.083 | 0.158 | 1.014 | 0.405 | 0.359 | 0.362 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.225 | 0.340 | 0.453 | 0.199 | 0.424 | 2.851 | 1.150 | 0.995 | 0.798 | 0.000 |
| Stdev | 0.140 | 0.196 | 0.596 | 0.148 | 0.206 | 1.265 | 0.522 | 0.515 | 0.521 | 0.001 |
| Prev(%) | 62.838 | 66.216 | 44.595 | 62.838 | 76.351 | 83.784 | 81.081 | 79.054 | 77.027 | 1.399 |
Human Microbiome Project 16S RefSeq (V1-V3) (not published)
(data from healthy subjects)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.378 | 0.510 | 1.119 | 0.319 | 0.962 | 5.216 | 2.190 | 3.085 | 2.998 | 0.000 | 0.012 | 0.000 | 0.065 | 0.033 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.079 | 0.661 | 0.272 | 0.444 | 0.600 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 1.070 | 1.431 | 2.796 | 0.829 | 2.026 | 10.151 | 4.794 | 6.902 | 6.104 | 0.000 | 0.006 | 0.000 | 0.117 | 0.019 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.661 | 1.023 | 2.855 | 0.422 | 1.039 | 4.598 | 2.078 | 3.080 | 2.805 | 0.000 | 0.068 | 0.000 | 0.299 | 0.146 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 87.417 | 88.079 | 81.119 | 84.247 | 94.631 | 96.154 | 97.321 | 100.000 | 100.000 | 0.000 | 11.207 | 0.000 | 15.517 | 11.521 | 0.000 | 0.000 | 0.000 | 0.000 |
Human Microbiome Project 16S RefSeq (V3-V5) (not published)
(data from healthy subjects)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.203 | 0.264 | 0.729 | 0.296 | 0.675 | 2.993 | 1.507 | 1.367 | 1.441 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.064 | 0.376 | 0.095 | 0.134 | 0.170 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.558 | 0.749 | 1.800 | 0.798 | 1.516 | 6.749 | 3.691 | 3.239 | 3.109 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.360 | 0.470 | 2.101 | 0.492 | 0.704 | 2.839 | 1.514 | 1.483 | 1.546 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 78.765 | 80.000 | 58.272 | 78.660 | 92.839 | 97.917 | 94.081 | 98.783 | 98.783 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.239 | 0.100 | 0.088 | 0.139 | 0.226 | 0.162 | 0.561 | 0.421 | 0.233 | 0.000 |
| 10thp | 0.000 | 0.003 | 0.002 | 0.000 | 0.028 | 0.019 | 0.116 | 0.015 | 0.007 | 0.000 |
| 90thp | 0.535 | 0.176 | 0.295 | 0.333 | 0.542 | 0.242 | 1.017 | 1.139 | 0.474 | 0.000 |
| Stdev | 0.721 | 0.175 | 0.132 | 0.253 | 0.195 | 0.285 | 0.792 | 0.396 | 0.307 | 0.000 |
| Prev(%) | 83.784 | 91.176 | 90.698 | 85.714 | 100.000 | 96.000 | 100.000 | 96.774 | 95.000 | 0.000 |
Human Microbiome Project Metaphlan (not published)
(data from healthy subjects)
No Notes
