Subspecies: subsp. dentisani (HMT-398)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Eren V1-V3 www.pnas.org
(data from healthy subjects)
Notes:
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 1.202 | 1.436 | 5.054 | 5.240 | 4.088 | 1.257 | 1.780 | 1.967 | 1.241 | 0.003 |
| 10thp | 0.252 | 0.452 | 2.775 | 2.920 | 1.704 | 0.277 | 0.274 | 0.319 | 0.284 | 0.000 |
| 90thp | 2.288 | 3.179 | 7.431 | 7.392 | 6.540 | 2.693 | 4.315 | 5.234 | 2.802 | 0.010 |
| Stdev | 1.058 | 0.974 | 1.839 | 1.746 | 1.914 | 0.939 | 1.617 | 1.879 | 0.945 | 0.005 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 97.403 | 100.000 | 100.000 | 100.000 | 54.545 |
Eren V3-V5 www.pnas.org
(data from healthy subjects)
Notes:
Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.
Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.467 | 0.670 | 2.381 | 2.608 | 1.036 | 0.299 | 0.638 | 0.617 | 0.104 | 0.000 |
| 10thp | 0.076 | 0.170 | 0.634 | 0.767 | 0.249 | 0.084 | 0.046 | 0.044 | 0.012 | 0.000 |
| 90thp | 0.960 | 1.337 | 4.596 | 4.710 | 2.263 | 0.565 | 1.589 | 1.597 | 0.214 | 0.001 |
| Stdev | 0.412 | 0.500 | 1.657 | 1.496 | 0.882 | 0.249 | 0.938 | 0.841 | 0.131 | 0.002 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 97.973 | 11.888 |
Human Microbiome Project 16S RefSeq (V1-V3) (not published)
(data from healthy subjects)
Notes:
Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-398 because they are too close to differentiate at theses sites (AKE,BMU,HPA,PTO,SAL,SUBP,SUPP,THR).
Reads equidistant to HMT-398 and HMT-734 were assigned to each taxon in proportion to the abundance of HMT-398 and HMT-734 individually at this body site (ANA).
Reads equidistant to HMT-073 and HMT-398 were assigned to each taxon in proportion to the abundance of HMT-073 and HMT-398 individually at theses sites (BMU,PTO).
Reads equidistant to HMT-398 and HMT-677 were assigned to each taxon in proportion to the abundance of HMT-398 and HMT-677 individually at theses sites (LRC,SAL,SUBP,THR).
Because HMT-707 is not present individually, all equidistant reads were assigned to HMT-398 at theses sites (HPA,TDO).
Because HMT-070 is not present individually, all equidistant reads were assigned to HMT-398 at theses sites (RAF,LAF).
Because HMT-734 is not present individually, all equidistant reads were assigned to HMT-398 at theses sites (AKE,RRC,SUBP).
Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-398 because they are too close to differentiate at theses sites (AKE,BMU,HPA,PTO,SAL,SUBP,SUPP,THR).
Reads equidistant to HMT-398 and HMT-734 were assigned to each taxon in proportion to the abundance of HMT-398 and HMT-734 individually at this body site (ANA).
Reads equidistant to HMT-073 and HMT-398 were assigned to each taxon in proportion to the abundance of HMT-073 and HMT-398 individually at theses sites (BMU,PTO).
Reads equidistant to HMT-398 and HMT-677 were assigned to each taxon in proportion to the abundance of HMT-398 and HMT-677 individually at theses sites (LRC,SAL,SUBP,THR).
Because HMT-707 is not present individually, all equidistant reads were assigned to HMT-398 at theses sites (HPA,TDO).
Because HMT-070 is not present individually, all equidistant reads were assigned to HMT-398 at theses sites (RAF,LAF).
Because HMT-734 is not present individually, all equidistant reads were assigned to HMT-398 at theses sites (AKE,RRC,SUBP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 5.950 | 7.866 | 3.408 | 6.980 | 1.046 | 1.438 | 0.839 | 0.654 | 0.506 | 0.143 | 0.158 | 0.176 | 0.510 | 0.523 | 0.000 | 0.019 | 0.000 | 0.000 |
| 10thp | 1.149 | 2.088 | 0.211 | 1.414 | 0.219 | 0.208 | 0.040 | 0.054 | 0.043 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 11.621 | 14.782 | 8.844 | 13.320 | 2.072 | 2.935 | 1.938 | 1.472 | 1.395 | 0.285 | 0.383 | 0.270 | 1.605 | 1.530 | 0.000 | 0.020 | 0.000 | 0.000 |
| Stdev | 5.513 | 5.565 | 4.875 | 5.846 | 1.003 | 1.578 | 1.590 | 1.109 | 0.649 | 0.490 | 0.422 | 0.883 | 0.863 | 0.998 | 0.000 | 0.117 | 0.000 | 0.000 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 94.615 | 96.726 | 99.333 | 100.000 | 69.000 | 62.931 | 52.408 | 71.264 | 71.889 | 0.000 | 27.027 | 0.000 | 0.000 |
Human Microbiome Project 16S RefSeq (V3-V5) (not published)
(data from healthy subjects)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.170 | 1.069 | 2.092 | 2.003 | 1.707 | 0.000 | 0.141 | 0.254 | 0.375 | 0.000 | 0.185 | 0.000 | 0.310 | 0.156 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.152 | 0.080 | 0.122 | 0.045 | 0.000 | 0.000 | 0.000 | 0.025 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.354 | 2.280 | 5.465 | 4.594 | 5.032 | 0.000 | 0.362 | 0.610 | 0.849 | 0.000 | 0.037 | 0.000 | 0.274 | 0.451 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.439 | 1.185 | 4.478 | 4.032 | 3.364 | 0.000 | 0.359 | 0.411 | 0.403 | 0.000 | 1.041 | 0.000 | 1.468 | 0.365 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 84.198 | 99.024 | 96.049 | 99.256 | 94.118 | 0.000 | 66.044 | 85.888 | 95.134 | 0.000 | 17.516 | 0.000 | 29.655 | 48.667 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
Notes:
Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.
Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 1.677 | 3.014 | 2.845 | 4.844 | 1.494 | 1.345 | 1.820 | 1.689 | 1.102 | 0.086 |
| 10thp | 0.128 | 0.740 | 0.238 | 1.000 | 0.221 | 0.174 | 0.111 | 0.079 | 0.088 | 0.000 |
| 90thp | 3.350 | 5.315 | 5.153 | 11.293 | 3.443 | 2.839 | 3.876 | 4.724 | 4.180 | 0.220 |
| Stdev | 2.323 | 2.211 | 3.446 | 5.180 | 1.396 | 1.730 | 2.766 | 3.284 | 1.981 | 0.259 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 50.000 |
Human Microbiome Project Metaphlan (not published)
(data from healthy subjects)
No Notes
