HOMD ::Genus:Actinomyces

Genus: Actinomyces

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces Each rank name is a link to abundance plots at that rank:

Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Actinomyces

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	9.905	11.006	0.700	1.969	1.290	0.974	2.285	1.551	2.539	0.001
10^thp	1.330	1.327	0.000	0.084	0.094	0.112	0.116	0.171	0.094	0.000
90^thp	22.268	24.684	2.589	4.775	2.671	2.023	4.092	4.382	6.240	0.000
Stdev	10.648	10.180	1.307	3.144	2.094	1.264	4.289	2.144	3.940	0.007
Prev(%)	98.701	97.403	80.519	94.805	96.104	93.506	94.805	96.104	96.104	5.195

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.223	3.583	0.188	0.743	0.631	0.366	0.851	0.700	1.045	0.001
10^thp	0.277	0.441	0.000	0.000	0.034	0.032	0.053	0.024	0.027	0.000
90^thp	8.697	8.038	0.367	1.485	1.400	0.829	1.708	1.715	2.344	0.000
Stdev	5.362	4.846	0.518	1.524	1.228	0.519	1.305	1.218	1.767	0.004
Prev(%)	99.324	99.324	56.081	88.514	93.919	92.568	94.595	91.216	91.216	2.797

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	9.398	9.993	1.197	2.351	1.331	0.766	1.987	1.500	2.127	0.117	0.118	0.090	0.418	0.406	0.000	0.000	0.000	0.000
10^thp	0.918	2.216	0.010	0.071	0.090	0.000	0.134	0.065	0.058	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	18.522	20.979	3.868	6.694	2.849	1.801	4.678	3.603	4.352	0.304	0.218	0.171	1.309	1.260	0.000	0.000	0.000	0.000
Stdev	9.264	8.356	2.038	3.614	2.100	1.107	2.821	2.316	3.071	0.300	0.560	0.348	0.922	0.928	0.000	0.000	0.000	0.000
Prev(%)	94.040	96.026	91.608	94.521	93.289	87.692	95.238	92.000	95.484	52.667	47.701	35.411	54.598	55.300	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	8.547	10.009	2.178	3.390	2.244	1.153	2.567	1.864	2.509	0.210	0.309	0.313	0.712	0.705	0.000	0.000	0.000	0.000
10^thp	1.197	1.687	0.000	0.215	0.230	0.118	0.165	0.083	0.192	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	18.756	22.561	5.261	8.435	4.746	2.684	5.911	4.752	5.997	0.452	0.368	0.396	1.369	1.259	0.000	0.000	0.000	0.000
Stdev	8.682	8.446	5.499	4.475	2.547	1.504	3.235	2.569	2.938	0.668	1.464	1.922	2.027	2.600	0.000	0.000	0.000	0.000
Prev(%)	99.506	99.024	79.506	98.263	97.442	98.512	95.639	96.350	97.567	59.004	46.178	42.593	67.586	66.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	5.758	7.068	0.627	0.824	0.792	0.678	0.967	0.791	0.819	0.007
10^thp	0.313	0.559	0.017	0.063	0.053	0.021	0.088	0.055	0.023	0.000
90^thp	13.737	21.945	1.401	2.502	1.651	1.794	2.247	1.618	1.716	0.008
Stdev	8.066	9.919	1.397	1.068	0.634	0.962	1.306	1.391	1.541	0.022
Prev(%)	100.000	100.000	95.349	100.000	100.000	100.000	100.000	100.000	100.000	20.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	10.644	14.836	13.003	2.502	4.712	0.540	2.842	3.888	5.877	11.902	0.427	0.124	0.089	3.760	0.045	0.992	0.152	0.033
10^thp	1.205	3.350	3.586	0.000	0.320	0.540	0.363	0.115	0.954	2.945	0.000	0.000	0.000	3.760	0.000	0.000	0.000	0.000
90^thp	19.313	29.640	28.686	5.644	11.380	0.540	7.074	7.485	12.676	24.135	0.328	0.224	0.069	3.760	0.000	0.395	0.053	0.000
Stdev	9.092	11.023	9.894	4.181	6.184	0.000	4.472	3.101	7.508	9.024	2.003	0.329	0.407	0.000	0.151	3.540	1.105	0.516
Prev(%)	95.833	99.747	100.000	82.353	98.404	100.000	100.000	87.500	100.000	99.531	24.324	50.000	34.375	100.000	9.091	21.429	13.131	3.273

[Species:Actinomyces dentalis]	[Species:Actinomyces gerencseriae]	[Species:Actinomyces graevenitzii]	[Species:Actinomyces israelii]	[Species:Actinomyces johnsonii]
[Species:Actinomyces massiliensis]	[Species:Actinomyces naeslundii]	[Species:Actinomyces oricola]	[Species:Actinomyces oris]	[Species:Actinomyces radicidentis]
[Species:Actinomyces sp. HMT-170]	[Species:Actinomyces sp. HMT-403]	[Species:Actinomyces sp. HMT-414]	[Species:Actinomyces sp. HMT-448]	[Species:Actinomyces sp. HMT-525]
[Species:Actinomyces sp. HMT-896]	[Species:Actinomyces sp. HMT-897]	[Species:Actinomyces timonensis]	[Species:Actinomyces viscosus]

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