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16S rRNA RefSeq: V15.22    Genomic RefSeq: V9.15
Ecology (Abundance) Pages
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Most abundant taxa for each oral sub-habitat.
The following abundance pages show available data with bar charts for the ranks in each taxon name (from domain to species) in the HOMD database. Listed on this page are taxonomic names from domain through genus for the taxa in HOMD. Each name in the table below is a link to a page showing abundance data from the three sources:
Eren (2014) , Segata (2012), and Dewhirst (not published)

DomainPhylumClassOrderFamilyGenus
Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter
Bacteria
Absconditabacteria_(SR1)_[F-1]
Acetobacteraceae
Actinomycetaceae
Aerococcaceae
Alcaligenaceae
Alphaproteobacteria_[F-1]
Anaerolineaceae
Atopobiaceae
Bacillaceae
Bacteroidaceae
Bacteroidales_[F-2]
Bacteroidetes_[F-1]
Bartonellaceae
Bdellovibrionaceae
Bifidobacteriaceae
Boseaceae
Bradyrhizobiaceae
Brevibacteriaceae
Brucellaceae
Burkholderiaceae
Caldilineaceae
Campylobacteraceae
Cardiobacteriaceae
Carnobacteriaceae
Caulobacteraceae
Chitinophagaceae
Chlamydiaceae
Chlorobiaceae
Clostridiales_[F-1]
Clostridiales_[F-3]
Comamonadaceae
Coprobacillaceae
Coriobacteriaceae
Corynebacteriaceae
Dermabacteraceae
Desulfobulbaceae
Desulfomicrobiaceae
Desulfovibrionaceae
Dietziaceae
Eggerthellaceae
Enterobacteriaceae
Enterococcaceae
Erysipelotrichaceae
Erythrobacteraceae
Eubacteriaceae
Flavobacteriaceae
Fusobacteriaceae
Gemellaceae
Gracilibacteria_(GN02)_[F-1]
Gracilibacteria_(GN02)_[F-2]
Helicobacteraceae
Ignavibacteriaceae
Intrasporangiaceae
Kytococcaceae
Lachnospiraceae
Lactobacillaceae
Lawsonellaceae
Leptotrichiaceae
Listeriaceae
Melioribacteraceae
Microbacteriaceae
Micrococcaceae
Microcoleaceae
Mollicutes_[F-1]
Mollicutes_[F-2]
Moraxellaceae
Morganellaceae
Mycobacteriaceae
Mycoplasmataceae
Neisseriaceae
Odoribacteraceae
Oscillospiraceae
Paenibacillaceae
Pasteurellaceae
Peptococcaceae
Peptoniphilaceae
Peptostreptococcaceae
Phyllobacteriaceae
Porphyromonadaceae
Prevotellaceae
Promicromonosporaceae
Propionibacteriaceae
Pseudomonadaceae
Rhizobiaceae
Rhodobacteraceae
Rhodocyclaceae
Rhodospirillales_[F-1]
Ruminococcaceae
Saccharibacteria_(TM7)_[F-1]
Saccharibacteria_(TM7)_[F-2]
Sanguibacteraceae
Selenomonadaceae
Sphingobacteriaceae
Sphingomonadaceae
Staphylococcaceae
Streptococcaceae
Synergistaceae
Syntrophomonadaceae_[VIII]
Tannerellaceae
Treponemataceae
Veillonellaceae
Victivallaceae
WPS-2_[F-1]
Weeksellaceae
Xanthomonadaceae
Yersiniaceae
Abiotrophia
Absconditabacteria_(SR1)_[G-1]
Achromobacter
Acidipropionibacterium
Acidovorax
Acinetobacter
Actinomyces
Aeriscardovia
Aerococcus
Afipia
Aggregatibacter
Agrobacterium
Alkalihalobacillus
Alloiococcus
Alloprevotella
Alloscardovia
Anaerococcus
Anaeroglobus
Anaerolinea
Anaerolineae_[G-1]
Anoxybacillus
Aquamicrobium
Arachnia
Arcanobacterium
Arsenicicoccus
Arthrospira
Atopobium
Bacillus
Bacteroidales_[G-2]
Bacteroides
Bacteroidetes_[G-3]
Bacteroidetes_[G-4]
Bacteroidetes_[G-5]
Bacteroidetes_[G-7]
Bartonella
Bdellovibrio
Bifidobacterium
Bordetella
Bosea
Bradyrhizobium
Brevibacterium
Brevundimonas
Brochothrix
Brucella
Bulleidia
Burkholderia
Butyrivibrio
Caldilinea
Campylobacter
Candidatus_Saccharimonas
Capnocytophaga
Cardiobacterium
Catonella
Caulobacter
Cellulosimicrobium
Centipeda
Chlamydia
Chlorobium
Chryseobacterium
Cloacibacterium
Clostridiales_[F-1][G-1]
Clostridiales_[F-1][G-2]
Clostridiales_[F-3][G-1]
Colibacter
Comamonas
Corynebacterium
Cronobacter
Cryptobacterium
Cupriavidus
Cutibacterium
Delftia
Dermabacter
Desulfobulbus
Desulfomicrobium
Desulfovibrio
Dialister
Dietzia
Dolosigranulum
Eggerthella
Eggerthia
Eikenella
Enhydrobacter
Enterobacter
Enterococcus
Erysipelothrix
Erysipelotrichaceae_[G-1]
Erythrobacter
Escherichia
Eubacterium
Fannyhessea
Fastidiosipila
Filifactor
Finegoldia
Flavitalea
Fretibacterium
Fusobacterium
Gardnerella
Gemella
Gracilibacteria_(GN02)_[G-1]
Gracilibacteria_(GN02)_[G-2]
Gracilibacteria_(GN02)_[G-3]
Gracilibacteria_(GN02)_[G-4]
Granulicatella
Haematobacter
Haemophilus
Helicobacter
Ignavibacterium
Janibacter
Jeotgalicoccus
Johnsonella
Jonquetella
Kingella
Klebsiella
Kluyvera
Kocuria
Kytococcus
Lachnoanaerobaculum
Lachnospiraceae_[G-10]
Lachnospiraceae_[G-2]
Lachnospiraceae_[G-3]
Lachnospiraceae_[G-7]
Lachnospiraceae_[G-8]
Lachnospiraceae_[G-9]
Lacticaseibacillus
Lactiplantibacillus
Lactobacillus
Lactococcus
Lancefieldella
Lautropia
Lawsonella
Lentilactobacillus
Leptothrix
Leptotrichia
Levilactobacillus
Ligilactobacillus
Limosilactobacillus
Listeria
Lysinibacillus
Megasphaera
Melioribacter
Mesorhizobium
Micavibrio
Microbacterium
Micrococcus
Mitsuokella
Mobiluncus
Mogibacterium
Mollicutes_[G-1]
Mollicutes_[G-2]
Moraxella
Mycobacterium
Mycolicibacterium
Mycoplasma
Mycoplasmopsis
Neisseria
Neisseriaceae_[G-1]
Novosphingobium
Odoribacter
Olegusella
Olsenella
Oribacterium
Oryzomicrobium
Ottowia
Paenibacillus
Paracoccus
Parascardovia
Parvimonas
Pedobacter
Peptidiphaga
Peptococcus
Peptoniphilaceae_[G-1]
Peptoniphilaceae_[G-2]
Peptoniphilaceae_[G-3]
Peptoniphilus
Peptostreptococcaceae_[G-1]
Peptostreptococcaceae_[G-2]
Peptostreptococcaceae_[G-3]
Peptostreptococcaceae_[G-4]
Peptostreptococcaceae_[G-5]
Peptostreptococcaceae_[G-6]
Peptostreptococcaceae_[G-7]
Peptostreptococcaceae_[G-8]
Peptostreptococcaceae_[G-9]
Peptostreptococcus
Phocaeicola
Porphyromonas
Prevotella
Propionibacteriaceae_[G-1]
Propionibacteriaceae_[G-2]
Proteus
Pseudoleptotrichia
Pseudomonas
Pseudoramibacter
Pyramidobacter
Ralstonia
Rhodobacter
Rhodopseudomonas
Riemerella
Roseomonas
Rothia
Ruminococcaceae_[G-1]
Ruminococcaceae_[G-2]
Ruminococcaceae_[G-3]
Saccharibacteria_(TM7)_[G-1]
Saccharibacteria_(TM7)_[G-2]
Saccharibacteria_(TM7)_[G-3]
Saccharibacteria_(TM7)_[G-4]
Saccharibacteria_(TM7)_[G-5]
Saccharibacteria_(TM7)_[G-6]
Saccharibacteria_(TM7)_[G-7]
Saccharibacteria_(TM7)_[G-8]
Sanguibacter
Scardovia
Schaalia
Schlegelella
Segetibacter
Selenomonas
Serratia
Shuttleworthia
Simonsiella
Slackia
Sneathia
Solobacterium
Sphingomonas
Staphylococcus
Stenotrophomonas
Stomatobaculum
Streptococcus
Syntrophomonadaceae_[VIII][G-1]
Tannerella
Treponema
Variovorax
Veillonella
Veillonellaceae_[G-1]
Victivallales_[G-1]
WPS-2_[G-1]
Weeksellaceae_[G-1]
Yersinia