HOMD ::Genus:Lactobacillus

Genus: Lactobacillus

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus Each rank name is a link to abundance plots at that rank:

Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Lactobacillus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.103	0.011	0.000	0.086	0.009	0.040	0.007	0.000	0.074	0.529	0.111	0.187	1.618	1.174	81.490	87.081	90.193	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	44.883	68.491	75.855	0.000
90^thp	0.010	0.045	0.000	0.071	0.000	0.112	0.000	0.000	0.027	0.266	0.230	0.223	3.610	3.166	98.325	98.836	99.830	0.000
Stdev	1.228	0.028	0.000	0.542	0.067	0.128	0.042	0.000	0.693	4.835	0.429	1.537	7.685	2.910	24.320	20.505	21.627	0.000
Prev(%)	13.245	21.854	0.000	39.041	6.040	27.692	6.548	0.000	29.032	44.667	41.667	35.694	55.747	54.378	100.000	100.000	100.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.054	0.023	0.027	0.050	0.146	0.000	0.027	0.020	0.013	0.636	0.916	0.956	1.577	2.101	80.283	86.383	87.083	0.005
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	18.632	43.975	34.797	0.000
90^thp	0.034	0.018	0.000	0.000	0.055	0.000	0.000	0.012	0.000	0.397	0.351	0.565	3.479	4.847	99.340	99.790	99.931	0.000
Stdev	0.513	0.220	0.324	0.785	1.920	0.000	0.329	0.310	0.180	6.015	7.654	7.867	6.425	9.132	29.686	26.311	28.770	0.062
Prev(%)	21.728	14.390	8.889	8.685	18.414	0.000	9.346	11.192	7.786	48.276	36.943	39.198	57.241	62.667	99.425	99.454	98.429	5.596

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.007	0.001	0.000	0.003	0.005	0.003	0.013	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.001	0.000	0.000	0.006	0.002	0.000	0.000	0.000	0.000	0.000
Stdev	0.036	0.003	0.001	0.011	0.017	0.022	0.073	0.001	0.000	0.001
Prev(%)	10.811	8.824	4.651	20.000	14.286	8.000	6.061	3.226	0.000	10.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.252	0.002	0.096	0.013	0.000	0.026	0.000	0.582	0.002	0.914	0.059	0.090	3.720	85.281	82.513	82.479	0.003
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	3.720	76.050	25.611	11.225	0.000
90^thp	0.000	0.000	0.000	0.020	0.000	0.000	0.075	0.000	0.000	0.000	0.000	0.020	0.069	3.720	99.490	99.129	100.000	0.000
Stdev	0.000	5.006	0.010	0.385	0.191	0.000	0.041	0.000	2.910	0.032	8.561	0.255	0.318	0.000	28.769	34.625	32.365	0.059
Prev(%)	0.000	1.515	4.167	11.765	2.128	0.000	37.500	0.000	8.000	0.939	7.207	20.833	28.125	100.000	100.000	92.857	100.000	1.818

[Species:Lactobacillus acidophilus]	[Species:Lactobacillus crispatus]	[Species:Lactobacillus gasseri]	[Species:Lactobacillus iners]	[Species:Lactobacillus jensenii]
[Species:Lactobacillus johnsonii]	[Species:Lactobacillus ultunensis]

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