HOMD ::Family:Lactobacillaceae

Family: Lactobacillaceae

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae Each rank name is a link to abundance plots at that rank:

Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Lactobacillaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.113	0.011	0.000	0.086	0.009	0.040	0.007	0.000	0.074	0.529	0.111	0.187	1.618	1.174	82.183	87.864	91.073	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	45.049	72.140	77.212	0.000
90^thp	0.010	0.045	0.000	0.071	0.000	0.112	0.000	0.000	0.027	0.266	0.230	0.223	3.610	3.166	98.921	99.284	99.870	0.000
Stdev	1.344	0.028	0.000	0.542	0.067	0.128	0.042	0.000	0.693	4.835	0.429	1.537	7.685	2.910	24.230	20.503	21.219	0.000
Prev(%)	13.245	21.854	0.000	39.041	6.040	27.692	6.548	0.000	29.032	44.667	41.667	35.694	55.747	54.378	100.000	100.000	100.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.060	0.023	0.027	0.050	0.146	0.000	0.045	0.020	0.022	0.636	0.916	0.956	1.577	2.101	80.787	86.877	87.590	0.005
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	18.878	45.194	35.281	0.000
90^thp	0.050	0.018	0.000	0.000	0.055	0.000	0.004	0.012	0.000	0.397	0.351	0.565	3.479	4.847	99.486	99.899	99.979	0.000
Stdev	0.517	0.220	0.324	0.785	1.920	0.000	0.460	0.310	0.253	6.015	7.654	7.867	6.425	9.132	29.785	26.363	28.814	0.062
Prev(%)	23.457	14.390	8.889	8.685	18.414	0.000	10.280	11.192	8.029	48.276	36.943	39.198	57.241	62.667	99.425	99.454	98.429	5.596

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.015	0.002	0.000	0.004	0.011	0.005	0.015	0.001	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.005	0.004	0.000	0.009	0.025	0.000	0.004	0.003	0.000	0.000
Stdev	0.077	0.006	0.001	0.014	0.033	0.031	0.081	0.002	0.001	0.001
Prev(%)	16.216	14.706	6.977	22.857	17.857	10.000	15.152	16.129	5.000	10.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.252	0.371	0.096	0.013	0.000	0.026	0.000	0.582	0.002	0.921	0.059	0.090	3.720	85.415	82.687	82.612	0.007
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	3.720	76.050	25.959	11.237	0.000
90^thp	0.000	0.000	0.000	0.020	0.000	0.000	0.075	0.000	0.000	0.000	0.000	0.020	0.069	3.720	99.490	99.283	100.000	0.000
Stdev	0.000	5.011	1.758	0.385	0.191	0.000	0.041	0.000	2.910	0.032	8.622	0.255	0.318	0.000	28.697	34.616	32.389	0.073
Prev(%)	0.000	1.768	8.333	11.765	2.660	0.000	37.500	0.000	8.000	1.878	7.658	20.833	28.125	100.000	100.000	92.857	100.000	5.455

[Genus:Lacticaseibacillus]	[Genus:Lactiplantibacillus]	[Genus:Lactobacillus]	[Genus:Lentilactobacillus]	[Genus:Levilactobacillus]
[Genus:Ligilactobacillus]	[Genus:Limosilactobacillus]

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