HOMD ::Genus:Leptotrichia

Genus: Leptotrichia

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia Each rank name is a link to abundance plots at that rank:

Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Leptotrichia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.605	2.399	0.209	0.477	0.633	0.523	3.116	2.449	1.892	0.000
10^thp	0.000	0.000	0.000	0.000	0.008	0.000	0.068	0.047	0.018	0.000
90^thp	4.424	7.770	0.183	1.012	1.587	1.609	7.930	7.481	5.773	0.000
Stdev	2.361	3.112	1.042	1.110	0.858	0.711	4.293	3.675	3.050	0.003
Prev(%)	85.714	88.312	49.351	87.013	89.610	81.818	93.506	94.805	90.909	1.299

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.273	3.792	0.231	0.783	1.348	1.067	4.928	4.069	2.966	0.000
10^thp	0.067	0.067	0.000	0.029	0.037	0.106	0.252	0.108	0.039	0.000
90^thp	6.112	8.488	0.408	1.975	3.558	2.837	15.371	12.121	11.443	0.000
Stdev	3.030	4.356	0.816	1.141	2.421	1.364	6.573	5.483	4.859	0.002
Prev(%)	91.892	93.919	57.432	91.892	93.243	95.946	96.622	96.622	92.568	1.399

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.806	2.462	0.377	0.750	1.096	0.691	4.213	3.363	2.975	0.026	0.048	0.032	0.210	0.146	0.000	0.000	0.000	0.000
10^thp	0.025	0.033	0.000	0.010	0.022	0.000	0.096	0.059	0.023	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	4.904	6.893	0.569	1.890	2.750	1.665	11.852	10.189	9.181	0.082	0.056	0.027	0.649	0.484	0.000	0.000	0.000	0.000
Stdev	2.737	3.342	1.474	1.501	1.850	1.000	5.578	4.511	4.839	0.083	0.250	0.181	0.647	0.395	0.000	0.000	0.000	0.000
Prev(%)	92.715	94.702	71.329	91.781	94.631	83.846	96.131	98.000	94.194	26.000	23.563	14.731	34.483	29.954	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.437	3.376	0.578	1.445	2.086	1.400	6.487	5.305	4.268	0.000	0.082	0.170	0.445	0.180	0.000	0.000	0.000	0.014
10^thp	0.040	0.062	0.000	0.026	0.051	0.110	0.113	0.137	0.044	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	6.155	8.719	1.410	3.822	5.320	3.579	17.514	14.396	12.927	0.000	0.049	0.107	0.644	0.355	0.000	0.000	0.000	0.000
Stdev	3.147	4.247	1.632	2.296	3.099	1.819	7.916	6.395	6.319	0.000	0.568	1.867	1.916	0.727	0.000	0.000	0.000	0.179
Prev(%)	93.333	93.415	67.160	91.811	92.072	95.536	94.704	96.594	95.134	0.000	19.427	22.222	35.862	29.333	0.000	0.000	0.000	4.623

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.122	8.038	1.222	1.331	1.281	0.918	4.071	3.137	3.662	0.004
10^thp	0.020	0.499	0.012	0.048	0.069	0.023	0.156	0.146	0.020	0.000
90^thp	12.173	22.144	4.417	3.429	2.874	2.303	10.274	7.012	15.306	0.002
Stdev	7.896	9.229	2.354	1.856	2.261	1.772	4.357	3.976	6.392	0.015
Prev(%)	98.649	100.000	97.674	100.000	100.000	98.000	100.000	100.000	100.000	10.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.420	1.936	1.264	0.159	0.564	0.210	0.527	3.302	2.711	2.265	0.037	0.002	0.002	0.000	0.000	0.509	0.006	0.006
10^thp	0.078	0.100	0.072	0.000	0.000	0.210	0.122	0.135	0.224	0.185	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.126	4.515	2.786	0.380	1.235	0.210	1.241	6.665	4.816	5.850	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	2.001	2.149	2.344	0.267	1.592	0.000	0.481	4.979	3.102	2.940	0.342	0.008	0.009	0.000	0.000	1.903	0.078	0.071
Prev(%)	95.833	96.717	91.667	76.471	76.596	100.000	100.000	87.500	100.000	98.592	2.252	4.167	6.250	0.000	0.000	7.143	1.515	1.091

[Species:Leptotrichia buccalis]	[Species:Leptotrichia hofstadii]	[Species:Leptotrichia hongkongensis]	[Species:Leptotrichia shahii]	[Species:Leptotrichia sp. HMT-218]
[Species:Leptotrichia sp. HMT-221]	[Species:Leptotrichia sp. HMT-223]	[Species:Leptotrichia sp. HMT-225]	[Species:Leptotrichia sp. HMT-417]	[Species:Leptotrichia sp. HMT-463]
[Species:Leptotrichia sp. HMT-498]	[Species:Leptotrichia sp. HMT-847]	[Species:Leptotrichia sp. HMT-879]	[Species:Leptotrichia sp. HMT-909]	[Species:Leptotrichia wadei]

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