HOMD ::Family:Leptotrichiaceae

Family: Leptotrichiaceae

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae Each rank name is a link to abundance plots at that rank:

Lower rank member(s): [Genus:Leptotrichia] [Genus:Pseudoleptotrichia] [Genus:Sneathia]

LINKS: Ecology Home | Life Page: Leptotrichiaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.905	3.929	0.332	0.736	0.945	0.953	3.668	3.260	2.421	0.001
10^thp	0.091	0.144	0.000	0.071	0.070	0.073	0.282	0.240	0.148	0.000
90^thp	7.712	10.052	0.376	1.436	2.089	2.210	9.722	8.277	6.332	0.000
Stdev	3.115	4.283	1.213	1.296	1.036	1.015	4.582	3.995	3.346	0.007
Prev(%)	97.403	97.403	64.935	98.701	97.403	93.506	97.403	98.701	96.104	2.597

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.299	5.099	0.306	1.029	1.579	1.455	5.334	4.708	3.393	0.000
10^thp	0.506	0.262	0.000	0.090	0.117	0.334	0.455	0.287	0.204	0.000
90^thp	7.662	10.542	0.564	2.284	3.788	3.192	16.134	12.380	11.587	0.000
Stdev	3.405	4.776	0.895	1.264	2.496	1.434	6.553	5.541	4.948	0.002
Prev(%)	97.297	99.324	69.595	95.946	97.973	100.000	98.649	97.973	97.297	1.399

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.981	3.913	0.614	1.102	1.575	1.175	4.969	4.512	3.841	0.041	0.092	0.051	0.263	0.264	0.323	0.277	0.370	0.000
10^thp	0.242	0.194	0.000	0.090	0.103	0.039	0.350	0.312	0.084	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	7.089	9.618	1.598	2.450	3.591	2.902	13.182	11.390	10.509	0.123	0.107	0.069	0.699	0.840	0.000	0.000	0.000	0.000
Stdev	3.278	4.135	1.740	1.740	2.205	1.300	5.683	4.848	5.081	0.110	0.527	0.266	0.841	0.727	2.332	2.124	2.763	0.000
Prev(%)	97.351	97.351	82.517	94.521	95.973	92.308	98.512	100.000	100.000	37.000	29.885	21.813	39.655	37.788	7.042	8.108	7.895	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.966	5.151	0.920	2.083	2.822	2.067	7.613	6.686	5.281	0.000	0.168	0.170	0.703	0.418	0.720	0.669	0.801	0.014
10^thp	0.378	0.348	0.000	0.204	0.267	0.476	0.634	0.664	0.272	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	9.241	11.536	2.353	5.066	6.694	4.166	19.707	16.179	13.941	0.000	0.149	0.107	1.425	0.822	0.000	0.000	0.000	0.000
Stdev	3.755	5.017	2.032	2.604	3.282	1.935	8.000	6.532	6.442	0.000	0.806	1.867	2.440	1.664	4.300	4.000	4.755	0.179
Prev(%)	98.272	98.780	80.494	97.767	97.442	99.405	97.508	99.757	98.783	0.000	29.299	22.222	45.517	40.667	9.770	7.104	6.806	4.623

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	5.101	9.593	1.621	1.798	2.125	1.701	5.221	4.157	5.131	0.010
10^thp	0.055	1.076	0.020	0.063	0.155	0.054	0.517	0.389	0.052	0.000
90^thp	16.064	23.621	5.368	4.960	4.812	4.120	12.812	8.183	18.404	0.019
Stdev	8.349	9.698	2.810	2.152	4.148	2.299	5.653	5.450	8.547	0.028
Prev(%)	100.000	100.000	97.674	100.000	100.000	98.000	100.000	100.000	100.000	25.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.734	1.972	1.338	0.178	0.565	0.210	0.527	3.302	2.715	2.265	0.037	0.018	0.002	0.000	0.000	0.509	0.356	0.006
10^thp	0.078	0.115	0.072	0.000	0.000	0.210	0.122	0.135	0.224	0.185	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.777	4.515	2.786	0.508	1.255	0.210	1.241	6.665	4.846	5.850	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	2.196	2.151	2.326	0.306	1.592	0.000	0.481	4.979	3.102	2.940	0.342	0.082	0.009	0.000	0.000	1.903	2.227	0.071
Prev(%)	95.833	96.970	91.667	76.471	76.596	100.000	100.000	87.500	100.000	98.592	2.252	8.333	6.250	0.000	0.000	7.143	8.081	1.091

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