HOMD ::genus::Pseudoleptotrichia

Genus: Pseudoleptotrichia

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Pseudoleptotrichia
Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Pseudoleptotrichia

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.175	1.450	0.238	0.351	0.479	0.484	0.709	1.144	0.865	0.014	0.045	0.018	0.053	0.101	0.000	0.000	0.000	0.000
10^thp	0.045	0.066	0.000	0.000	0.000	0.000	0.000	0.041	0.013	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.524	3.948	0.467	0.824	0.977	1.042	1.922	2.900	2.201	0.031	0.023	0.017	0.086	0.083	0.000	0.000	0.000	0.000
Stdev	1.214	1.583	0.654	0.440	0.875	0.635	0.980	1.543	1.377	0.052	0.317	0.108	0.287	0.424	0.000	0.000	0.000	0.000
Prev(%)	94.702	96.026	68.531	89.041	83.893	84.615	83.036	92.667	92.258	20.000	16.379	12.748	17.241	13.825	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.529	1.775	0.342	0.638	0.735	0.667	1.061	1.381	1.012	0.000	0.086	0.000	0.258	0.239	0.000	0.000	0.000	0.000
10^thp	0.115	0.102	0.000	0.000	0.000	0.026	0.000	0.058	0.018	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.377	4.163	0.859	1.500	1.939	1.538	3.064	3.217	2.491	0.000	0.089	0.000	0.665	0.460	0.000	0.000	0.000	0.000
Stdev	1.545	1.815	0.836	0.790	0.943	0.649	1.395	1.755	1.374	0.000	0.361	0.000	0.934	0.983	0.000	0.000	0.000	0.000
Prev(%)	97.284	98.049	62.469	89.082	85.166	92.262	85.358	94.647	91.484	0.000	20.064	0.000	28.276	28.667	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.979	1.555	0.399	0.467	0.844	0.784	1.148	1.016	1.469	0.005
10^thp	0.009	0.096	0.004	0.006	0.014	0.025	0.033	0.015	0.007	0.000
90^thp	2.441	3.202	0.956	1.251	1.250	1.767	2.213	1.117	2.899	0.016
Stdev	2.216	1.884	0.562	0.599	2.111	1.183	2.518	2.342	3.691	0.013
Prev(%)	98.649	100.000	95.349	97.143	96.429	98.000	100.000	96.774	95.000	15.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.314	0.035	0.075	0.019	0.001	0.000	0.000	0.000	0.004	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.683	0.090	0.049	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.762	0.101	0.259	0.078	0.008	0.000	0.000	0.000	0.013	0.002	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	50.000	31.313	12.500	5.882	2.128	0.000	0.000	0.000	8.000	0.469	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.300	1.530	0.123	0.260	0.312	0.430	0.551	0.811	0.529	0.001
10^thp	0.020	0.071	0.000	0.022	0.009	0.000	0.000	0.000	0.000	0.000
90^thp	2.727	4.019	0.187	0.662	0.752	0.791	1.400	2.117	1.454	0.000
Stdev	1.328	1.935	0.406	0.277	0.351	0.625	0.804	1.093	0.793	0.006
Prev(%)	92.208	93.506	50.649	92.208	89.610	87.013	83.117	87.013	85.714	1.299

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.025	1.307	0.075	0.246	0.231	0.388	0.406	0.638	0.427	0.000
10^thp	0.045	0.123	0.000	0.000	0.000	0.036	0.000	0.000	0.000	0.000
90^thp	2.389	3.236	0.156	0.570	0.631	0.755	1.123	1.572	1.070	0.000
Stdev	1.193	1.434	0.257	0.320	0.276	0.378	0.472	0.767	0.609	0.000
Prev(%)	92.568	96.622	45.270	83.784	83.784	94.595	83.108	87.162	89.189	0.000

[Species:Pseudoleptotrichia goodfellowii]	[Species:Pseudoleptotrichia sp. HMT-212]	[Species:Pseudoleptotrichia sp. HMT-215]	[Species:Pseudoleptotrichia sp. HMT-217]	[Species:Pseudoleptotrichia sp. HMT-219]
[Species:Pseudoleptotrichia sp. HMT-392]

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