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Taxonomy: V4.0   |  16S rRNA RefSeq: V16.02   |  Genomic RefSeq: V11.01
Genus: Pseudoleptotrichia
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Oral:
SUBP-- Subgingival Plaque SUPP -- Supragingival Plaque PERIO -- Periodontal AKE -- Attached Keratinized Gingiva BMU -- Buccal Mucosa
HPA -- Hard Palate SAL -- Saliva THR -- Throat PTO -- Palatine Tonsils TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease RRC -- R_Retroauricular Crease LAF -- L_Antecubital Fossa RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus MVA -- Mid Vagina PFO -- Posterior Fornix
Gut:
STO -- Stool
Oral:
SUBP-- Subgingival Plaque
SUPP -- Supragingival Plaque
PERIO -- Periodontal
AKE -- Attached Keratinized Gingiva
BMU -- Buccal Mucosa
HPA -- Hard Palate
SAL -- Saliva
THR -- Throat
PTO -- Palatine Tonsils
TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease
RRC -- R_Retroauricular Crease
LAF -- L_Antecubital Fossa
RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus
MVA -- Mid Vagina
PFO -- Posterior Fornix
Gut:
STO -- Stool

Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)1.1751.4500.2380.3510.4790.4840.7091.1440.8650.0140.0450.0180.0530.1010.0000.0000.0000.000
10thp0.0450.0660.0000.0000.0000.0000.0000.0410.0130.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp2.5243.9480.4670.8240.9771.0421.9222.9002.2010.0310.0230.0170.0860.0830.0000.0000.0000.000
Stdev1.2141.5830.6540.4400.8750.6350.9801.5431.3770.0520.3170.1080.2870.4240.0000.0000.0000.000
Prev(%)94.70296.02668.53189.04183.89384.61583.03692.66792.25820.00016.37912.74817.24113.8250.0000.0000.0000.000

HMP 16S RefSeq (V3-V5) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)1.5291.7750.3420.6380.7350.6671.0611.3811.0120.0000.0860.0000.2580.2390.0000.0000.0000.000
10thp0.1150.1020.0000.0000.0000.0260.0000.0580.0180.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp3.3774.1630.8591.5001.9391.5383.0643.2172.4910.0000.0890.0000.6650.4600.0000.0000.0000.000
Stdev1.5451.8150.8360.7900.9430.6491.3951.7551.3740.0000.3610.0000.9340.9830.0000.0000.0000.000
Prev(%)97.28498.04962.46989.08285.16692.26285.35894.64791.4840.00020.0640.00028.27628.6670.0000.0000.0000.000

Dewhirst (35x9) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANA
Avg (%)0.9791.5550.3990.4670.8440.7841.1481.0161.4690.005
10thp0.0090.0960.0040.0060.0140.0250.0330.0150.0070.000
90thp2.4413.2020.9561.2511.2501.7672.2131.1172.8990.016
Stdev2.2161.8840.5620.5992.1111.1832.5182.3423.6910.013
Prev(%)98.649100.00095.34997.14396.42998.000100.00096.77495.00015.000

HMP Metaphlan (not published)
No Notes
SUBPSUPPPERIOAKEBMUHPASALTHRPTOTDOANALRCRRCRAFVINMVAPFOSTO
Avg (%)0.3140.0350.0750.0190.0010.0000.0000.0000.0040.0000.0000.0000.0000.0000.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.6830.0900.0490.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
Stdev0.7620.1010.2590.0780.0080.0000.0000.0000.0130.0020.0000.0000.0000.0000.0000.0000.0000.000
Prev(%)50.00031.31312.5005.8822.1280.0000.0000.0008.0000.4690.0000.0000.0000.0000.0000.0000.0000.000

Eren V1-V3 www.pnas.org
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOSTO
Avg (%)1.3001.5300.1230.2600.3120.4300.5510.8110.5290.001
10thp0.0200.0710.0000.0220.0090.0000.0000.0000.0000.000
90thp2.7274.0190.1870.6620.7520.7911.4002.1171.4540.000
Stdev1.3281.9350.4060.2770.3510.6250.8041.0930.7930.006
Prev(%)92.20893.50650.64992.20889.61087.01383.11787.01385.7141.299

Eren V3-V5 www.pnas.org
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOSTO
Avg (%)1.0251.3070.0750.2460.2310.3880.4060.6380.4270.000
10thp0.0450.1230.0000.0000.0000.0360.0000.0000.0000.000
90thp2.3893.2360.1560.5700.6310.7551.1231.5721.0700.000
Stdev1.1931.4340.2570.3200.2760.3780.4720.7670.6090.000
Prev(%)92.56896.62245.27083.78483.78494.59583.10887.16289.1890.000