HOMD ::klass::Flavobacteriia

Class: Flavobacteriia

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacteroidota; Flavobacteriia
Lower rank member(s): [Order:Flavobacteriales]
Genera:

LINKS: Ecology Home | Life Page: Flavobacteriia

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	9.320	10.791	2.030	1.789	0.518	1.985	1.283	2.005	0.823	0.047	0.145	0.101	0.267	0.333	0.000	0.000	0.000	0.000
10^thp	2.178	3.294	0.230	0.202	0.040	0.341	0.022	0.085	0.014	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	16.115	17.472	4.831	3.636	1.202	4.559	3.442	5.606	2.857	0.145	0.138	0.125	0.704	0.712	0.000	0.000	0.000	0.000
Stdev	6.069	6.730	2.291	2.011	0.507	1.776	2.223	2.849	1.325	0.106	0.814	0.572	0.945	1.210	0.000	0.000	0.000	0.000
Prev(%)	99.338	100.000	97.902	96.575	92.617	93.846	93.750	97.333	93.548	39.333	39.943	34.561	39.655	40.553	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	8.758	11.034	3.212	3.390	0.927	2.323	1.653	2.259	0.938	0.000	0.352	0.263	0.843	0.469	0.000	0.000	0.000	0.000
10^thp	1.572	3.489	0.342	0.547	0.095	0.552	0.025	0.089	0.038	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	16.293	19.422	6.550	6.963	2.050	4.760	3.990	5.713	2.604	0.000	0.269	0.218	2.092	0.757	0.000	0.000	0.000	0.000
Stdev	6.266	6.165	4.909	4.613	0.975	2.275	2.991	3.353	1.380	0.000	1.436	1.446	2.784	1.859	0.000	0.000	0.000	0.000
Prev(%)	99.753	100.000	98.025	99.504	93.862	99.107	91.589	97.810	94.647	0.000	33.758	25.926	48.966	36.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.600	8.394	0.525	0.437	0.952	0.438	0.527	0.252	0.489	0.003
10^thp	0.127	0.774	0.025	0.018	0.024	0.025	0.006	0.006	0.009	0.000
90^thp	12.035	17.838	1.185	0.887	1.436	1.009	1.745	0.823	0.792	0.001
Stdev	5.951	6.419	1.006	0.551	2.836	0.638	1.071	0.416	1.353	0.013
Prev(%)	100.000	100.000	100.000	97.143	100.000	98.000	100.000	100.000	100.000	10.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	7.006	7.432	2.092	0.282	0.978	0.100	0.934	3.587	2.551	0.745	0.119	0.010	0.017	1.190	0.000	0.607	0.036	0.004
10^thp	2.727	1.785	0.080	0.000	0.000	0.100	0.344	0.000	0.000	0.000	0.000	0.000	0.000	1.190	0.000	0.000	0.000	0.000
90^thp	12.474	13.570	3.972	0.856	2.210	0.100	1.769	9.840	5.898	2.440	0.000	0.000	0.000	1.190	0.000	0.000	0.000	0.000
Stdev	3.880	4.916	2.206	0.379	2.165	0.000	0.611	6.689	6.722	1.580	1.405	0.047	0.066	0.000	0.000	2.272	0.271	0.076
Prev(%)	100.000	99.747	95.833	70.588	82.713	100.000	100.000	75.000	80.000	79.577	8.108	4.167	9.375	100.000	0.000	7.143	5.556	1.273

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	10.470	11.537	1.533	2.102	0.570	2.042	1.607	2.224	0.849	0.002
10^thp	1.504	2.998	0.062	0.181	0.050	0.261	0.048	0.063	0.031	0.000
90^thp	19.947	20.913	4.342	4.078	1.215	4.991	4.326	5.808	2.140	0.000
Stdev	7.706	7.193	1.846	3.135	0.661	1.985	2.753	3.263	1.379	0.008
Prev(%)	100.000	100.000	94.805	98.701	96.104	94.805	94.805	92.208	93.506	7.792

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	7.257	9.325	0.611	1.347	0.466	1.830	1.136	1.616	0.657	0.001
10^thp	1.148	3.004	0.000	0.176	0.059	0.462	0.031	0.041	0.000	0.000
90^thp	14.008	16.098	1.357	2.622	0.926	3.703	2.634	4.755	1.546	0.000
Stdev	5.151	4.933	1.245	2.822	0.581	1.335	2.266	2.642	1.217	0.007
Prev(%)	99.324	100.000	84.459	100.000	95.946	100.000	91.216	93.919	88.514	2.098

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