HOMD ::Genus:Abiotrophia

Genus: Abiotrophia

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Abiotrophia Each rank name is a link to abundance plots at that rank:

Lower rank member(s): [Species:Abiotrophia defectiva] [Species:Abiotrophia sp. HMT-427]

LINKS: Ecology Home | Life Page: Abiotrophia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.489	0.484	0.163	0.274	0.130	0.174	0.038	0.026	0.013	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.218	1.411	0.188	0.745	0.247	0.449	0.098	0.079	0.035	0.000
Stdev	1.080	0.760	0.589	0.596	0.446	0.604	0.118	0.060	0.041	0.001
Prev(%)	63.636	75.325	32.468	61.039	53.247	42.857	24.675	31.169	20.779	1.299

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.188	0.312	0.058	0.232	0.084	0.109	0.041	0.023	0.010	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.339	0.795	0.071	0.662	0.205	0.320	0.083	0.057	0.031	0.000
Stdev	0.448	0.618	0.258	0.460	0.190	0.181	0.115	0.060	0.037	0.001
Prev(%)	57.432	69.595	25.676	64.189	48.649	58.108	35.811	30.405	19.595	0.699

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.419	0.637	0.195	0.569	0.120	0.136	0.040	0.000	0.000	0.039	0.027	0.029	0.105	0.070	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.054	1.514	0.262	2.247	0.284	0.332	0.084	0.000	0.000	0.103	0.028	0.014	0.166	0.202	0.000	0.000	0.000	0.000
Stdev	0.906	1.511	0.665	1.044	0.322	0.458	0.133	0.000	0.000	0.185	0.125	0.262	0.532	0.241	0.000	0.000	0.000	0.000
Prev(%)	70.199	80.795	49.650	71.233	57.718	49.231	28.869	0.000	0.000	23.667	15.517	12.181	15.517	17.512	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.334	0.527	0.201	0.642	0.157	0.170	0.050	0.025	0.016	0.081	0.066	0.055	0.051	0.151	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.758	1.321	0.535	1.872	0.441	0.470	0.104	0.062	0.033	0.110	0.092	0.075	0.190	0.485	0.000	0.000	0.000	0.000
Stdev	0.916	1.000	0.551	1.254	0.360	0.414	0.187	0.111	0.100	0.444	0.336	0.291	0.140	0.438	0.000	0.000	0.000	0.000
Prev(%)	65.185	76.341	40.988	66.998	50.384	55.952	30.218	28.224	22.384	21.839	22.930	17.593	25.517	29.333	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.097	0.220	0.066	0.217	0.151	0.082	0.019	0.076	0.031	0.007
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.291	0.722	0.222	0.814	0.440	0.260	0.053	0.062	0.044	0.026
Stdev	0.221	0.396	0.128	0.356	0.282	0.167	0.038	0.334	0.109	0.020
Prev(%)	56.757	70.588	62.791	77.143	78.571	80.000	63.636	61.290	62.500	15.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.353	0.387	0.266	0.041	0.532	0.020	0.141	0.006	0.002	0.008	0.023	0.024	0.002	0.300	0.000	0.000	0.001	0.002
10^thp	0.000	0.000	0.000	0.000	0.000	0.020	0.007	0.000	0.000	0.000	0.000	0.000	0.000	0.300	0.000	0.000	0.000	0.000
90^thp	0.895	1.170	0.139	0.132	1.525	0.020	0.365	0.020	0.006	0.020	0.000	0.000	0.000	0.300	0.000	0.000	0.000	0.000
Stdev	0.888	0.597	1.195	0.069	1.229	0.000	0.152	0.017	0.007	0.049	0.212	0.116	0.011	0.000	0.000	0.000	0.007	0.023
Prev(%)	58.333	72.980	25.000	41.176	56.117	100.000	87.500	12.500	12.000	13.615	2.703	8.333	3.125	100.000	0.000	0.000	1.010	0.909

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